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Overview

ID MAG04621
Name YYD1_bin.17
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order CAIMUX01
Family VGJL01
Genus
Species
Assembly information
Completeness (%) 72.07
Contamination (%) 0.53
GC content (%) 69.0
N50 (bp) 5,045
Genome size (bp) 2,003,851

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1796

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1007087_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 585.0
YYD1_k127_1007087_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 298.0
YYD1_k127_1007087_2 Parallel beta-helix repeats - - - 0.0000000000000000000002494 111.0
YYD1_k127_1014899_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006225 281.0
YYD1_k127_1014899_1 SMART phosphoesterase PHP domain protein K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000000005807 234.0
YYD1_k127_1014899_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000002606 98.0
YYD1_k127_1045120_0 PFAM transposase IS204 IS1001 IS1096 IS1165 family protein K07485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006333 415.0
YYD1_k127_1056288_0 Formiminotransferase-cyclodeaminase K00603,K13990 - 2.1.2.5,4.3.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009202 608.0
YYD1_k127_1056288_1 agmatine deiminase activity K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000001715 282.0
YYD1_k127_1056288_2 ADP binding - - - 0.0000000000000000000000005858 114.0
YYD1_k127_1056288_3 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.0000000000002966 83.0
YYD1_k127_1092695_0 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000006482 230.0
YYD1_k127_1092695_1 G5 domain protein - - - 0.0000000000000000000000000203 121.0
YYD1_k127_1092695_2 Sporulation initiation inhibitor protein Soj K03496 - - 0.000000000000000000000003027 103.0
YYD1_k127_1092695_3 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000002053 82.0
YYD1_k127_1095749_0 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009303 410.0
YYD1_k127_1095749_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007717 358.0
YYD1_k127_1095749_2 His Kinase A (phosphoacceptor) domain K00694,K03406,K07315,K14986 - 2.4.1.12,2.7.13.3,3.1.3.3 0.00000000000000000000000000000000000000000000000003499 199.0
YYD1_k127_1124585_0 Predicted permease K07089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 597.0
YYD1_k127_1124585_1 Thrombospondin type 3 repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007674 273.0
YYD1_k127_1124585_2 Cytochrome C biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000000000008202 216.0
YYD1_k127_1124585_3 arsenical-resistance protein K03325 - - 0.0000000000000000000000000000000001876 134.0
YYD1_k127_1124585_4 - - - - 0.0000000000000000000000000001334 127.0
YYD1_k127_1124585_5 SMART regulatory protein ArsR - - - 0.0000000000000000000002352 102.0
YYD1_k127_1124585_6 TIGRFAM redox-active disulfide protein 2 - - - 0.00000000000000001584 94.0
YYD1_k127_1139698_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 648.0
YYD1_k127_1139698_1 type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000007868 209.0
YYD1_k127_1173415_0 Transposase, Mutator family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 413.0
YYD1_k127_1173415_1 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000004592 159.0
YYD1_k127_1173415_2 peptidase activity, acting on L-amino acid peptides K01179 - 3.2.1.4 0.00000000000000000001258 96.0
YYD1_k127_1177497_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000003205 271.0
YYD1_k127_1177497_1 TIGRFAM integral membrane protein MviN K03980 - - 0.000006218 55.0
YYD1_k127_118873_0 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000007627 98.0
YYD1_k127_1210185_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.000000000000000000000000000000000000000000000000000000000005202 211.0
YYD1_k127_1210185_1 Aminotransferase class-III - - - 0.0000000000000000000000000000000000000000000000000000000007728 205.0
YYD1_k127_1210185_2 - K15383 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0042802,GO:0044425 - 0.000000007162 63.0
YYD1_k127_1214383_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 404.0
YYD1_k127_1214383_1 Aldo Keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 353.0
YYD1_k127_1214383_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000009225 156.0
YYD1_k127_122128_0 - - - - 0.0000000000000000000000000000000000007244 155.0
YYD1_k127_122128_1 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.00000000001825 74.0
YYD1_k127_1224590_0 MutL protein K00854 - 2.7.1.17 8.522e-213 668.0
YYD1_k127_1224590_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 572.0
YYD1_k127_1224590_2 - - - - 0.00000000000000004606 86.0
YYD1_k127_1224590_3 - - - - 0.000000000006427 73.0
YYD1_k127_1224590_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00001072 49.0
YYD1_k127_1242480_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 599.0
YYD1_k127_1242480_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000001627 243.0
YYD1_k127_1242480_2 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000538 154.0
YYD1_k127_1242480_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000202 119.0
YYD1_k127_1242480_4 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000001007 54.0
YYD1_k127_1277292_0 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 453.0
YYD1_k127_1277292_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000009544 57.0
YYD1_k127_1278139_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000004043 125.0
YYD1_k127_1278139_1 calcium- and calmodulin-responsive adenylate cyclase activity K01179 - 3.2.1.4 0.00000000000002976 87.0
YYD1_k127_1278139_2 Tetratricopeptide repeat - - - 0.000000000001575 81.0
YYD1_k127_1297950_0 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000003047 247.0
YYD1_k127_1297950_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 - 2.7.7.7 0.000000000000000000000000000000000000000000002849 180.0
YYD1_k127_1301018_0 Subtilase family - - - 0.0000000000000000000000000000000000000004098 160.0
YYD1_k127_1301018_1 - - - - 0.000009694 57.0
YYD1_k127_1366186_0 LVIVD repeat K01179 - 3.2.1.4 0.000000000000001481 91.0
YYD1_k127_1395692_0 Belongs to the peptidase S8 family K01337,K01387,K05994,K08604,K14645,K20276 - 3.4.11.10,3.4.21.50,3.4.24.25,3.4.24.3 0.00000000000000000003485 105.0
YYD1_k127_1395692_1 FlgD Ig-like domain - - - 0.000000002029 70.0
YYD1_k127_144980_0 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.0000000000000000000000115 113.0
YYD1_k127_144980_1 DNA topoisomerase VI subunit A K03166 - 5.99.1.3 0.000000002524 57.0
YYD1_k127_144980_2 Dolichyl-phosphate-mannose-protein mannosyltransferase K00728 - 2.4.1.109 0.00000000576 68.0
YYD1_k127_1510252_0 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000001991 203.0
YYD1_k127_1510252_1 transcriptional regulator K13572 - - 0.000000000000000000000000000008836 134.0
YYD1_k127_1510252_2 - - - - 0.000005505 56.0
YYD1_k127_1537398_0 Isocitrate/isopropylmalate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 570.0
YYD1_k127_1537398_1 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 452.0
YYD1_k127_1541180_0 Belongs to the LarC family K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005594 294.0
YYD1_k127_1541180_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000001015 224.0
YYD1_k127_1541180_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000002742 177.0
YYD1_k127_1541180_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000001338 125.0
YYD1_k127_1541180_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.000000000000000000000000003705 114.0
YYD1_k127_1581219_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000004153 72.0
YYD1_k127_1591485_0 adenosine deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007959 390.0
YYD1_k127_1591485_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 317.0
YYD1_k127_1591485_2 ABC transporter C-terminal domain K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000002128 235.0
YYD1_k127_1591485_3 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000002108 155.0
YYD1_k127_1591485_4 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000001177 92.0
YYD1_k127_1591485_5 Toprim domain - - - 0.00000000001296 69.0
YYD1_k127_1617276_0 Methylenetetrahydrofolate reductase K00297,K00547,K00548 - 1.5.1.20,2.1.1.10,2.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 356.0
YYD1_k127_1617276_1 domain, Protein K21449 - - 0.0000007547 59.0
YYD1_k127_1639665_0 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 432.0
YYD1_k127_1639665_1 PFAM Endonuclease Exonuclease phosphatase K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 289.0
YYD1_k127_1639665_2 Belongs to the serpin family K13963 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003658 259.0
YYD1_k127_168101_0 PglZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 529.0
YYD1_k127_168101_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 493.0
YYD1_k127_168101_2 Integral membrane sensor signal transduction histidine kinase K07709,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 316.0
YYD1_k127_168101_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 313.0
YYD1_k127_168101_4 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000001743 237.0
YYD1_k127_168101_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000005717 124.0
YYD1_k127_168101_6 PFAM Peptidase M22, glycoprotease K14742 - - 0.0000000000000000000000002694 119.0
YYD1_k127_168101_7 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000001397 120.0
YYD1_k127_168101_8 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.00000000000007136 80.0
YYD1_k127_168101_9 Organic solvent tolerance protein OstA - - - 0.00002319 57.0
YYD1_k127_17013_0 Domain of unknown function (DUF5117) - - - 3.54e-239 768.0
YYD1_k127_1762488_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1109.0
YYD1_k127_1762488_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006921 488.0
YYD1_k127_1762488_2 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 484.0
YYD1_k127_1762488_3 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000008985 92.0
YYD1_k127_1762488_4 Sulfurtransferase - - - 0.0000000000000000577 82.0
YYD1_k127_1762488_5 HlyD family secretion protein - - - 0.000000002875 59.0
YYD1_k127_1762488_6 Iron-sulfur cluster-binding domain - - - 0.0000001374 64.0
YYD1_k127_1790761_0 PFAM Cytochrome c, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000696 434.0
YYD1_k127_1790761_1 oxidase subunit K08738 - - 0.0000000000000000000000000000000000000000000000000000000000008478 225.0
YYD1_k127_1790761_2 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000001501 214.0
YYD1_k127_1805176_0 Belongs to the ABC transporter superfamily K05816,K10112 - 3.6.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007967 432.0
YYD1_k127_1805176_1 helix_turn _helix lactose operon repressor K02529,K03435 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009811 303.0
YYD1_k127_1805176_2 cellulose binding K00505 - 1.14.18.1 0.0000000000000000000000000000000000000000000002729 176.0
YYD1_k127_1805176_3 sequence-specific DNA binding K07110 - - 0.0000000000000000000001213 99.0
YYD1_k127_1805634_0 C4-type zinc ribbon domain K07164,K22391 - 3.5.4.16 0.0000000000000000000006037 106.0
YYD1_k127_1805634_1 LppC putative lipoprotein - - - 0.00000000167 69.0
YYD1_k127_1805634_3 Dolichyl-phosphate-mannose-protein mannosyltransferase K00786 - - 0.00002204 58.0
YYD1_k127_183995_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 5.567e-284 896.0
YYD1_k127_183995_1 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002175 271.0
YYD1_k127_183995_2 PFAM HNH endonuclease - - - 0.000000000000000000000000000000000000000000001203 189.0
YYD1_k127_183995_3 bacterial-type flagellum-dependent cell motility - - - 0.00000000004843 70.0
YYD1_k127_1856892_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 3.214e-236 740.0
YYD1_k127_1856892_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.476e-209 671.0
YYD1_k127_1856892_2 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 479.0
YYD1_k127_1856892_3 Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed K00626 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005611 347.0
YYD1_k127_1856892_4 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000441 276.0
YYD1_k127_1856892_5 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.000000000000000000000000000000000000000000002267 178.0
YYD1_k127_1856892_6 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000007967 162.0
YYD1_k127_1856892_7 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.00000000000000000000000000000000000007595 146.0
YYD1_k127_1856892_8 Biotin-requiring enzyme K01960 - 6.4.1.1 0.00000000001427 75.0
YYD1_k127_1905295_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175,K00177,K00187 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 587.0
YYD1_k127_1905295_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 482.0
YYD1_k127_1905295_2 Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000002674 222.0
YYD1_k127_1905295_3 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.00000000000000000000001429 107.0
YYD1_k127_1905295_4 Hydrogenase/urease nickel incorporation, metallochaperone, hypA K04651 - - 0.00000000000008009 76.0
YYD1_k127_1905295_5 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000003294 55.0
YYD1_k127_1937861_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 380.0
YYD1_k127_1937861_1 Bacterial extracellular solute-binding proteins, family 5 Middle K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000009758 265.0
YYD1_k127_1937861_2 Histidine kinase K02668,K07709,K07710 - 2.7.13.3 0.0000000000000000000007073 112.0
YYD1_k127_1943791_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 561.0
YYD1_k127_1943791_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004097 429.0
YYD1_k127_1943791_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 299.0
YYD1_k127_1943791_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000001706 220.0
YYD1_k127_1943791_4 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000001438 50.0
YYD1_k127_1947840_0 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 518.0
YYD1_k127_1947840_1 synthase K00705,K01176,K01187,K01208,K05341,K21575 - 2.4.1.25,2.4.1.4,3.2.1.1,3.2.1.133,3.2.1.135,3.2.1.20,3.2.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000001925 273.0
YYD1_k127_1947840_2 racemase activity, acting on amino acids and derivatives K01779 - 5.1.1.13 0.00004314 50.0
YYD1_k127_1970269_0 Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 418.0
YYD1_k127_1970269_1 4 iron, 4 sulfur cluster binding K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 295.0
YYD1_k127_1970269_2 Thiamine-binding protein - - - 0.0000000000000000000000000000000000000001889 153.0
YYD1_k127_1970269_3 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000002154 102.0
YYD1_k127_1970269_4 Glycine cleavage H-protein - - - 0.00000000000000000000146 104.0
YYD1_k127_1970269_5 Glycine cleavage H-protein - - - 0.0000000000008094 77.0
YYD1_k127_2030278_0 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009735 288.0
YYD1_k127_2030278_1 Collagenase K08303 - - 0.00000000000000000000000000000000000000000000000007052 184.0
YYD1_k127_2030278_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000002567 143.0
YYD1_k127_2030278_3 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000006749 78.0
YYD1_k127_2047377_0 glycyl-radical enzyme activating activity K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 480.0
YYD1_k127_2047377_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 368.0
YYD1_k127_2047377_2 SpoU rRNA Methylase family K00556 - 2.1.1.34 0.0000000000000000000003597 106.0
YYD1_k127_2047377_3 alpha/beta hydrolase fold - - - 0.0000000000000000000003869 110.0
YYD1_k127_2047377_4 regulator of chromosome condensation, RCC1 - - - 0.0000000001524 75.0
YYD1_k127_2053761_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000744 346.0
YYD1_k127_2053761_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 300.0
YYD1_k127_2053761_2 cytochrome complex assembly - - - 0.00000000000000000000000000000000000000008797 162.0
YYD1_k127_2053761_3 uroporphyrinogen-III synthase activity K01719,K13542,K13770,K22108 - 2.1.1.107,4.2.1.75 0.000000000000000001328 100.0
YYD1_k127_2053761_4 Cellulose biosynthesis protein BcsQ K03496 - - 0.0000205 50.0
YYD1_k127_2061672_0 Belongs to the carbamoyltransferase HypF family K04656 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005833 619.0
YYD1_k127_2061672_1 PFAM Nickel-dependent hydrogenase, large subunit - - - 0.0000000000000000000000000001726 117.0
YYD1_k127_2061672_2 hydrogenase maturation protease K03605 - - 0.000000000000003836 86.0
YYD1_k127_206263_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 454.0
YYD1_k127_206263_1 Bacterial extracellular solute-binding protein, family 7 K11688,K21395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 301.0
YYD1_k127_206263_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000008022 228.0
YYD1_k127_206263_3 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000009123 187.0
YYD1_k127_206263_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000003522 113.0
YYD1_k127_2086133_0 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 474.0
YYD1_k127_2086133_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 408.0
YYD1_k127_2086133_10 methyltransferase - - - 0.0000000000000003371 91.0
YYD1_k127_2086133_2 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004269 389.0
YYD1_k127_2086133_3 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002284 297.0
YYD1_k127_2086133_4 COG0438 Glycosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007523 267.0
YYD1_k127_2086133_5 COG2801 Transposase and inactivated derivatives - - - 0.0000000000000000000000000000000000000000000000000003068 186.0
YYD1_k127_2086133_6 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07710 - 2.7.13.3 0.0000000000000000000000000000000000000000000000001214 192.0
YYD1_k127_2086133_7 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000002788 159.0
YYD1_k127_2086133_8 HIT domain K01518,K02503,K19710,K21220 - 2.5.1.3,2.7.7.53,3.6.1.17 0.0000000000000000000000000000008646 130.0
YYD1_k127_2086133_9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000002458 87.0
YYD1_k127_2089476_0 Belongs to the peptidase S26 family - - - 0.0000000000000000000000000000000000006272 145.0
YYD1_k127_2089476_1 G-protein signalling modulator 2 (AGS3-like, C. elegans) K15837,K15839 GO:0000132,GO:0000226,GO:0000278,GO:0000922,GO:0001709,GO:0001965,GO:0003674,GO:0005092,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007186,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0007399,GO:0007400,GO:0007405,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008283,GO:0008356,GO:0009987,GO:0010564,GO:0010638,GO:0014016,GO:0014017,GO:0015630,GO:0016020,GO:0016043,GO:0017145,GO:0019904,GO:0022008,GO:0022402,GO:0023052,GO:0030010,GO:0030154,GO:0030234,GO:0030695,GO:0031291,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0035556,GO:0036445,GO:0040001,GO:0042802,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0043621,GO:0044087,GO:0044089,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045165,GO:0045167,GO:0045175,GO:0045177,GO:0045179,GO:0045185,GO:0045787,GO:0048103,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051235,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051345,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051653,GO:0051656,GO:0051657,GO:0051661,GO:0051716,GO:0051726,GO:0055057,GO:0055059,GO:0060236,GO:0060259,GO:0060341,GO:0060589,GO:0061351,GO:0061842,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070840,GO:0071840,GO:0071944,GO:0072089,GO:0072686,GO:0090068,GO:0090169,GO:0090224,GO:0097431,GO:0097574,GO:0097575,GO:0098722,GO:0098772,GO:0099568,GO:0099738,GO:1902115,GO:1902117,GO:1902850,GO:1903047,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1904776,GO:1904778,GO:1905832 - 0.00000000000004273 83.0
YYD1_k127_2112822_0 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000002128 239.0
YYD1_k127_2112822_1 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM-like protein K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000004751 205.0
YYD1_k127_2112822_2 3-hydroxyacyl-CoA dehydrogenase K00074 GO:0003674,GO:0003824,GO:0003857,GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0008691,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 1.1.1.157 0.00000000000000000000000000000000000000000000000000002029 213.0
YYD1_k127_2112822_3 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K13483 - - 0.00001123 50.0
YYD1_k127_2120352_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002898 293.0
YYD1_k127_2120352_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000015 238.0
YYD1_k127_2120352_2 Helix-hairpin-helix domain K02347 - - 0.0000000000000000000000000000236 120.0
YYD1_k127_2120352_3 O-methyltransferase - - - 0.0000000000000000000000006131 107.0
YYD1_k127_2120352_4 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.000000000000000000000001101 108.0
YYD1_k127_2120352_5 O-methyltransferase - - - 0.000000000000000002685 87.0
YYD1_k127_2121514_0 Predicted ATPase of the ABC class - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005192 347.0
YYD1_k127_2121514_1 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000003931 249.0
YYD1_k127_2121514_2 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000000003617 140.0
YYD1_k127_2121514_3 Outer membrane lipoprotein - - - 0.00000000000000000000005756 110.0
YYD1_k127_2121514_4 TonB C terminal K03646,K03832 - - 0.0000000000005645 80.0
YYD1_k127_2121514_5 Major facilitator superfamily - - - 0.00001382 57.0
YYD1_k127_21363_0 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004408 384.0
YYD1_k127_21363_1 3-beta hydroxysteroid dehydrogenase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000009378 215.0
YYD1_k127_21363_2 PAP2 superfamily - - - 0.000000000000000000000000000000029 141.0
YYD1_k127_21363_3 - - - - 0.0000000000000000000000004311 111.0
YYD1_k127_21363_4 - - - - 0.000000000000000000000008603 113.0
YYD1_k127_21363_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides - - - 0.00000000000000006702 94.0
YYD1_k127_215444_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 448.0
YYD1_k127_2156092_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 352.0
YYD1_k127_2156092_1 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0000726,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008833,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.21.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002577 297.0
YYD1_k127_2156092_2 permease - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.00000000000000000000000000000000000000000002812 177.0
YYD1_k127_2156092_3 Exonuclease - - - 0.000000000000000000000000000000000125 140.0
YYD1_k127_2156092_4 - - - - 0.0000000000000000000000000000006795 128.0
YYD1_k127_2166879_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 576.0
YYD1_k127_2166879_1 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002374 286.0
YYD1_k127_2166879_2 iron ion homeostasis K03709,K04758 - - 0.000000000000000000000000000000000000000000001397 176.0
YYD1_k127_2166879_3 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K07106 - 4.2.1.126 0.000000000000000000000000000000000008137 142.0
YYD1_k127_2166879_4 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000007054 130.0
YYD1_k127_2202344_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 426.0
YYD1_k127_2202344_1 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000008848 171.0
YYD1_k127_2202344_2 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.000000000000000000000000000000000000001259 168.0
YYD1_k127_22068_0 Dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009599 241.0
YYD1_k127_22068_1 metallophosphoesterase K07096 - - 0.000000000000000000000000000000000000000000000002751 182.0
YYD1_k127_22068_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000002486 166.0
YYD1_k127_22068_3 TM2 domain - - - 0.000000000000000000000000000000003992 134.0
YYD1_k127_2209645_0 response regulator K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 384.0
YYD1_k127_2209645_1 FES K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008533 253.0
YYD1_k127_2209645_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000001555 183.0
YYD1_k127_2209645_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000005927 145.0
YYD1_k127_2209645_4 PAS domain K07652 - 2.7.13.3 0.00000000000000000000000000000004947 141.0
YYD1_k127_2209645_5 - - - - 0.000000002158 67.0
YYD1_k127_2236281_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 441.0
YYD1_k127_2236281_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 327.0
YYD1_k127_2252274_0 Bacterial regulatory protein, Fis family K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 419.0
YYD1_k127_2252274_1 HAMP domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000636 290.0
YYD1_k127_2252274_2 PFAM Histone deacetylase K04768 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005814 271.0
YYD1_k127_2252274_3 succinate dehydrogenase K00241 - - 0.00000000000000000000000000000000000000001028 175.0
YYD1_k127_2303706_0 D12 class N6 adenine-specific DNA methyltransferase K07318 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 359.0
YYD1_k127_2303706_1 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005833 302.0
YYD1_k127_2303706_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000001434 256.0
YYD1_k127_2303706_3 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000009719 252.0
YYD1_k127_2303706_4 type II and III secretion system protein K02507,K02666 - - 0.00000000000000000000000000000000000001597 157.0
YYD1_k127_2303706_5 DUF167 - - - 0.00000000000001038 78.0
YYD1_k127_2303706_6 Domain of unknown function (DUF4920) - - - 0.00000000001915 73.0
YYD1_k127_2303706_7 peptidase dimerisation domain protein K13049 - - 0.00000003183 56.0
YYD1_k127_2311773_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 344.0
YYD1_k127_2311773_1 Prokaryotic N-terminal methylation motif - - - 0.000001603 59.0
YYD1_k127_2311773_2 Type IV pilus assembly protein PilM; K02662 - - 0.000008793 57.0
YYD1_k127_2314871_0 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 486.0
YYD1_k127_2314871_1 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 310.0
YYD1_k127_2314871_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000004407 101.0
YYD1_k127_2314871_3 signal transduction protein - - - 0.000000000000000000004356 104.0
YYD1_k127_2314871_4 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02768,K02769,K02770 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0016020,GO:0016740,GO:0016772,GO:0016773,GO:0022804,GO:0022857,GO:0034219,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090563 2.7.1.202 0.00000000000000000001386 102.0
YYD1_k127_2314871_5 Glycosyltransferase like family 2 - - - 0.000000000006114 69.0
YYD1_k127_2345051_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 302.0
YYD1_k127_2345051_1 PFAM peptidase S58, DmpA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004105 267.0
YYD1_k127_235552_0 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 478.0
YYD1_k127_235552_1 Major royal jelly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 377.0
YYD1_k127_235552_2 DinB superfamily - - - 0.0000000000000000000000000000000000000000000005128 170.0
YYD1_k127_235552_3 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000009975 131.0
YYD1_k127_2376038_0 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 364.0
YYD1_k127_2376038_1 Amidinotransferase K01478 - 3.5.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008065 287.0
YYD1_k127_2376038_2 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002473 257.0
YYD1_k127_2376038_3 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000001412 63.0
YYD1_k127_2377862_0 phosphorelay signal transduction system K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 437.0
YYD1_k127_2377862_1 Hypothetical methyltransferase K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 294.0
YYD1_k127_2377862_2 DNA-binding transcription factor activity K03892 - - 0.0000001919 57.0
YYD1_k127_2377862_3 - - - - 0.000004527 53.0
YYD1_k127_2383216_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005537 516.0
YYD1_k127_2383216_1 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 388.0
YYD1_k127_2383216_2 Catalyzes the conversion of dihydroorotate to orotate with NAD( ) as electron acceptor K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 323.0
YYD1_k127_2383216_3 Polysaccharide biosynthesis protein K01710,K01784 - 4.2.1.46,5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 308.0
YYD1_k127_2383216_4 WxcM-like, C-terminal K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000002731 219.0
YYD1_k127_2383216_5 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000003624 191.0
YYD1_k127_2383216_6 electron transfer subunit K02823 - - 0.00000000000000002315 85.0
YYD1_k127_2397569_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 447.0
YYD1_k127_2397569_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000004304 245.0
YYD1_k127_2397569_2 Bacterial phospho-glucose isomerase C-terminal SIS domain K15916 - 5.3.1.8,5.3.1.9 0.0000000000000000000000006833 122.0
YYD1_k127_2397569_3 PTS HPr component phosphorylation site K11189 - - 0.000000000000000000002641 96.0
YYD1_k127_2397569_4 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.0000001193 64.0
YYD1_k127_2397569_5 PTS system K02795 - - 0.0000003401 60.0
YYD1_k127_2408384_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000128 261.0
YYD1_k127_2425502_0 Tricorn protease homolog K08676 - - 1.505e-209 692.0
YYD1_k127_2425502_1 Di-haem cytochrome c peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 426.0
YYD1_k127_2425502_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000775 293.0
YYD1_k127_2425502_3 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.00000000000000000000000000000000000000000007063 180.0
YYD1_k127_2425502_4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000000000000003524 98.0
YYD1_k127_2425502_5 - - - - 0.0000000001036 71.0
YYD1_k127_2425502_6 extracellular matrix structural constituent - - - 0.00000005671 65.0
YYD1_k127_2443133_0 Oxidoreductase molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 447.0
YYD1_k127_2443133_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.00000000000000000000000000000000000000000000000000000000004604 226.0
YYD1_k127_2443133_2 ATPase domain of DNA mismatch repair MUTS family - - - 0.000000000000000000000000000000000000000000001537 173.0
YYD1_k127_2443133_3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.0000000000000000000000000009599 117.0
YYD1_k127_2444265_0 DNA polymerase type-B family K02336 - 2.7.7.7 1.615e-215 696.0
YYD1_k127_2444265_1 Diguanylate cyclase, GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 295.0
YYD1_k127_2444265_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001933 280.0
YYD1_k127_2444265_3 retrograde transport, endosome to Golgi K07095 - - 0.000000000000000000000000000000000000000000181 166.0
YYD1_k127_2444265_4 PFAM response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000000000000000000000708 144.0
YYD1_k127_2444265_5 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000003207 91.0
YYD1_k127_2444560_0 Highly conserved protein containing a thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000000002123 241.0
YYD1_k127_2444560_1 pfkB family carbohydrate kinase - - - 0.00001217 53.0
YYD1_k127_2467787_0 3-isopropylmalate dehydrogenase activity K00052 - 1.1.1.85 4.827e-194 611.0
YYD1_k127_2467787_1 prosthetic group binding K01644,K01646,K18292 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0008815,GO:0009346,GO:0009987,GO:0015980,GO:0016829,GO:0016830,GO:0016833,GO:0032991,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 4.1.3.25,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 462.0
YYD1_k127_2467787_2 Citrate lyase, alpha subunit (CitF) K01643 - 2.8.3.10 0.0000000000000000000000000000000000000000001315 173.0
YYD1_k127_2470424_0 eight transmembrane protein EpsH - - - 0.000000000000000000000000000000000000006196 161.0
YYD1_k127_2470424_1 Chain length determinant protein K16692 - - 0.000000000000000000000000000019 136.0
YYD1_k127_2470424_2 TIGRFAM EpsI family protein - - - 0.0000008277 61.0
YYD1_k127_2470424_3 Tetratricopeptide repeat - - - 0.000009336 59.0
YYD1_k127_2509942_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 476.0
YYD1_k127_2509942_1 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000006811 225.0
YYD1_k127_2509942_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000005278 186.0
YYD1_k127_2509942_3 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000009153 118.0
YYD1_k127_2509942_4 - - - - 0.000000000000000006676 98.0
YYD1_k127_2509942_5 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000005852 81.0
YYD1_k127_2509942_6 LVIVD repeat K01179 - 3.2.1.4 0.00000000000003718 86.0
YYD1_k127_2509942_7 curli production assembly transport component CsgG K04087 - - 0.00000000004863 75.0
YYD1_k127_2509942_8 C4-type zinc ribbon domain K07164 - - 0.00000003742 61.0
YYD1_k127_2509942_9 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.000843 52.0
YYD1_k127_2537299_0 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000006402 142.0
YYD1_k127_2537299_1 Two component regulator propeller - - - 0.00000000000001517 85.0
YYD1_k127_2549806_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004126 335.0
YYD1_k127_2549806_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007075 315.0
YYD1_k127_2549806_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 295.0
YYD1_k127_2549806_3 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000002775 254.0
YYD1_k127_2549806_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000005108 111.0
YYD1_k127_2606940_0 Belongs to the sigma-70 factor family K02405 - - 0.0000000000000000000000000000000000000000000000000000000000004823 220.0
YYD1_k127_2606940_1 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000002772 215.0
YYD1_k127_2606940_2 Belongs to the ParA family K04562 - - 0.0000000000000000000000000000000000000000000000000000242 201.0
YYD1_k127_2606940_3 response regulator - - - 0.0001207 47.0
YYD1_k127_2613130_0 Serine threonine protein kinase K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000004984 264.0
YYD1_k127_2613130_1 FR47-like protein - - - 0.00000000000000000000000000000000008762 151.0
YYD1_k127_2613130_2 DoxX K15977 - - 0.00000000000000002345 85.0
YYD1_k127_2627415_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 458.0
YYD1_k127_2627415_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 306.0
YYD1_k127_2627415_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000643 251.0
YYD1_k127_2627415_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000001219 72.0
YYD1_k127_263022_0 Polysulphide reductase K00185 - - 1.97e-213 672.0
YYD1_k127_263022_1 Molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 589.0
YYD1_k127_263022_2 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 362.0
YYD1_k127_263022_3 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 366.0
YYD1_k127_263022_4 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004175 257.0
YYD1_k127_263022_5 Protein of unknown function (DUF3341) - - - 0.00000000000000000000000000000000000000000000000000000000001434 214.0
YYD1_k127_263022_6 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000000000009216 207.0
YYD1_k127_2636855_0 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 372.0
YYD1_k127_2636855_1 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000002285 160.0
YYD1_k127_2636855_2 - - - - 0.0000000000000000001377 104.0
YYD1_k127_2636855_3 WD40 repeats - - - 0.0001846 54.0
YYD1_k127_2638147_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001855 270.0
YYD1_k127_2638147_1 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.00000000000000000000000000000000000000000007297 166.0
YYD1_k127_2638147_2 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000004962 148.0
YYD1_k127_2672592_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00334,K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 547.0
YYD1_k127_2672592_1 NADH dehydrogenase (ubiquinone) flavoprotein 2 K03943 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007507,GO:0008137,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009888,GO:0009987,GO:0010257,GO:0014706,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0048513,GO:0048731,GO:0048738,GO:0048856,GO:0050136,GO:0055086,GO:0055114,GO:0060537,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072359,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000008154 157.0
YYD1_k127_2672592_2 ATP synthesis coupled electron transport K00336 - 1.6.5.3 0.0000000000000000000000000000000005794 139.0
YYD1_k127_2673018_0 LVIVD repeat-containing protein - - - 0.000000000000000000000000000000006282 138.0
YYD1_k127_2673018_1 Peptidase M16 inactive domain - - - 0.000002669 56.0
YYD1_k127_269245_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 404.0
YYD1_k127_269245_1 serine O-acetyltransferase K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 312.0
YYD1_k127_269245_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002345 246.0
YYD1_k127_269245_3 amino acid - - - 0.000000000000000000000000000000000000000000000000000009122 207.0
YYD1_k127_269245_4 PFAM gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000003173 153.0
YYD1_k127_269245_5 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.0004585 44.0
YYD1_k127_2781458_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 GO:0002682,GO:0002684,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006950,GO:0008150,GO:0009314,GO:0009380,GO:0009605,GO:0009607,GO:0009628,GO:0016020,GO:0032991,GO:0035821,GO:0042802,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044424,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0071944,GO:0075136,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 3.628e-267 846.0
YYD1_k127_2781458_1 Quinolinate phosphoribosyl transferase, N-terminal domain K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000008624 228.0
YYD1_k127_2781458_2 - - - - 0.0000000000002921 81.0
YYD1_k127_2781458_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00009224 54.0
YYD1_k127_2785381_0 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 367.0
YYD1_k127_2785381_1 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000004088 177.0
YYD1_k127_2787856_0 peptide catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002295 258.0
YYD1_k127_2811203_0 PrkA AAA domain K07180 - - 4.833e-317 979.0
YYD1_k127_2811203_1 SpoVR like protein K06415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 618.0
YYD1_k127_2811203_2 Belongs to the UPF0229 family K09786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 492.0
YYD1_k127_2811203_3 ABC transporter, transmembrane K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 350.0
YYD1_k127_2853305_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1220.0
YYD1_k127_2853305_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.253e-229 734.0
YYD1_k127_2853305_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008148 392.0
YYD1_k127_2853305_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000914 306.0
YYD1_k127_2853305_4 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006281 306.0
YYD1_k127_2853305_5 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000599 180.0
YYD1_k127_2853305_6 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000142 115.0
YYD1_k127_2853305_7 palmitoyl-(protein) hydrolase activity K01091 - 3.1.3.18 0.000000000001219 79.0
YYD1_k127_2853305_8 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0002926 46.0
YYD1_k127_2907721_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771,K04772 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001304 285.0
YYD1_k127_2907721_1 UDP-2,3-diacylglucosamine hydrolase K03269 - 3.6.1.54 0.0000000000000000000000000000000000000000000003735 184.0
YYD1_k127_2907721_2 long-chain fatty acid transport protein - - - 0.0000000000000000000000000005539 126.0
YYD1_k127_2907721_3 cellulase activity K06882 - - 0.000000000000000001569 91.0
YYD1_k127_2948288_0 Glyceraldehyde-3-phosphate dehydrogenase K00150 - 1.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 441.0
YYD1_k127_2948288_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002 294.0
YYD1_k127_2948288_2 gtp cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000002926 259.0
YYD1_k127_2948288_3 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000008244 178.0
YYD1_k127_2948288_4 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.00000000000000000000000000002065 135.0
YYD1_k127_2948288_5 NUDIX domain - - - 0.000000000000001193 88.0
YYD1_k127_2948288_6 phosphorelay signal transduction system - - - 0.00002729 53.0
YYD1_k127_2948288_7 Catalyzes the conversion of chorismate to isochorismate K01851,K02361,K02552 GO:0000162,GO:0000287,GO:0003674,GO:0003824,GO:0004049,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008909,GO:0009058,GO:0009072,GO:0009073,GO:0009108,GO:0009233,GO:0009234,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042180,GO:0042181,GO:0042401,GO:0042430,GO:0042435,GO:0043167,GO:0043169,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0046872,GO:0050486,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901661,GO:1901663,GO:1902494 5.4.4.2 0.0002032 51.0
YYD1_k127_2951608_0 aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 403.0
YYD1_k127_2951608_1 ABC transporter substrate-binding protein K02020 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0042597,GO:0043167,GO:0043168,GO:0044464 - 0.0000000000000000000000000001858 123.0
YYD1_k127_2957034_0 Electron transfer flavoprotein K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001379 286.0
YYD1_k127_2957034_1 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000000000000000000000000001366 230.0
YYD1_k127_2957034_2 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000001328 178.0
YYD1_k127_2957034_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000002979 157.0
YYD1_k127_2957034_4 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000006622 123.0
YYD1_k127_2957034_5 Bacterial regulatory protein, Fis family - - - 0.00000000000000000001044 98.0
YYD1_k127_2978673_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005402 552.0
YYD1_k127_2978673_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 383.0
YYD1_k127_2978673_10 rRNA binding K02988 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000002379 210.0
YYD1_k127_2978673_11 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000589 195.0
YYD1_k127_2978673_12 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000007955 196.0
YYD1_k127_2978673_13 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000003413 189.0
YYD1_k127_2978673_14 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000009743 179.0
YYD1_k127_2978673_15 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000014 179.0
YYD1_k127_2978673_16 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000002198 171.0
YYD1_k127_2978673_17 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000003805 164.0
YYD1_k127_2978673_18 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000001553 148.0
YYD1_k127_2978673_19 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000002207 142.0
YYD1_k127_2978673_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005958 351.0
YYD1_k127_2978673_20 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000003829 135.0
YYD1_k127_2978673_21 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000001845 133.0
YYD1_k127_2978673_22 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000002801 113.0
YYD1_k127_2978673_23 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000356 100.0
YYD1_k127_2978673_24 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000007987 111.0
YYD1_k127_2978673_25 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000009564 102.0
YYD1_k127_2978673_26 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000001402 89.0
YYD1_k127_2978673_27 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000467 74.0
YYD1_k127_2978673_28 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000006836 74.0
YYD1_k127_2978673_29 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000009054 71.0
YYD1_k127_2978673_3 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 307.0
YYD1_k127_2978673_30 Ribosomal protein L36 K02919 - - 0.00000000001838 64.0
YYD1_k127_2978673_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006957 268.0
YYD1_k127_2978673_5 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005141 274.0
YYD1_k127_2978673_6 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002656 249.0
YYD1_k127_2978673_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000001413 242.0
YYD1_k127_2978673_8 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000002146 233.0
YYD1_k127_2978673_9 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000001263 211.0
YYD1_k127_2991427_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 377.0
YYD1_k127_2991427_1 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.000108 55.0
YYD1_k127_301632_0 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 490.0
YYD1_k127_301632_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 418.0
YYD1_k127_301632_2 PFAM asparagine synthase K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000001163 243.0
YYD1_k127_3041933_0 CHAT domain - - - 0.0000000000006754 81.0
YYD1_k127_3065580_0 PFAM DinB family - - - 0.000000000000000000000000000000000000000000000000001626 196.0
YYD1_k127_3065580_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 0.0000000000000000000000000000000005336 130.0
YYD1_k127_3065580_2 chlorophyll binding - - - 0.0000000000000000000000000000004672 141.0
YYD1_k127_3068562_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006308 337.0
YYD1_k127_3068562_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000000000000000002152 114.0
YYD1_k127_3068562_2 glycosyl transferase, family 39 - - - 0.00000000142 71.0
YYD1_k127_3068562_3 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000006897 68.0
YYD1_k127_3071210_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 9.139e-266 843.0
YYD1_k127_3071210_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 312.0
YYD1_k127_3071210_2 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000005422 240.0
YYD1_k127_3071210_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000481 220.0
YYD1_k127_3071210_4 PFAM Transketolase central region K00167 - 1.2.4.4 0.000000000000000000000000000000000001774 151.0
YYD1_k127_307230_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 367.0
YYD1_k127_307230_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000002522 228.0
YYD1_k127_307230_2 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000009766 218.0
YYD1_k127_307230_3 trimethylamine methyltransferase K14083 - 2.1.1.250 0.0000000000000000000000000000000002365 136.0
YYD1_k127_307230_4 MgtC family K07507 - - 0.00000000000000000000000000001346 126.0
YYD1_k127_307230_5 PFAM glycosyl transferase family 9 K02843 - - 0.0000000000000000000000000002056 120.0
YYD1_k127_3119979_0 benzoyl-CoA reductase K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009921 604.0
YYD1_k127_3119979_1 BadF/BadG/BcrA/BcrD ATPase family K04114 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 469.0
YYD1_k127_3119979_2 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 434.0
YYD1_k127_3119979_3 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00000000000000000000000000000000000000000000000000000000003381 215.0
YYD1_k127_3119979_4 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.0000000000000000000000009633 104.0
YYD1_k127_312498_0 catalyzes the conversion of acetate and CoA to acetyl-CoA K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 582.0
YYD1_k127_312498_1 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000005295 251.0
YYD1_k127_312498_2 belongs to the iron- containing alcohol dehydrogenase family K04072 - 1.1.1.1,1.2.1.10 0.000000000000000000000000000000000000000000009546 176.0
YYD1_k127_312498_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis - - - 0.0001872 49.0
YYD1_k127_312865_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000199 186.0
YYD1_k127_312865_1 Bacterioferritin K03594 - 1.16.3.1 0.000000000001046 68.0
YYD1_k127_315723_0 Carbamoyltransferase C-terminus K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 428.0
YYD1_k127_315723_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000001273 216.0
YYD1_k127_3161808_0 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 430.0
YYD1_k127_3161808_1 COG1125 ABC-type proline glycine betaine transport systems ATPase components K05847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 304.0
YYD1_k127_317313_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004452 450.0
YYD1_k127_317313_1 Peptidase family M28 - - - 0.000000000000000000000006953 119.0
YYD1_k127_3175265_0 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000005839 142.0
YYD1_k127_3175265_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.00000000007276 64.0
YYD1_k127_3175265_2 PhoQ Sensor - - - 0.00001482 56.0
YYD1_k127_3182094_0 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001444 254.0
YYD1_k127_3182094_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000003967 256.0
YYD1_k127_3182094_2 SurA N-terminal domain K03769 - 5.2.1.8 0.00000000000000000000000000000000000000006598 164.0
YYD1_k127_3204902_0 Sugar (and other) transporter K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006374 267.0
YYD1_k127_3204902_1 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000003463 247.0
YYD1_k127_3204902_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000006655 186.0
YYD1_k127_3204902_3 Doxx family K15977 - - 0.000000000000000000000000000000000000000172 152.0
YYD1_k127_3204902_4 redox protein, regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000009649 151.0
YYD1_k127_3204902_5 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000000000000000000000000000001874 136.0
YYD1_k127_3204902_6 PFAM sigma-70 region 2 domain protein K03088 - - 0.000000000000000000000000007359 122.0
YYD1_k127_3204902_7 TQO small subunit DoxD K15977 - - 0.0000000000000000000006033 102.0
YYD1_k127_3204902_8 CrcB-like protein, Camphor Resistance (CrcB) K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000191 60.0
YYD1_k127_3209002_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 9.191e-248 782.0
YYD1_k127_3209002_1 Belongs to the peptidase M16 family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 341.0
YYD1_k127_3209002_2 peptidyl-lysine modification to peptidyl-hypusine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007449 283.0
YYD1_k127_3209002_3 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000479 203.0
YYD1_k127_3209002_4 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000005068 200.0
YYD1_k127_3209002_5 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000002351 169.0
YYD1_k127_3209002_6 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000388 125.0
YYD1_k127_3209002_7 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000007223 80.0
YYD1_k127_3227477_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008469 273.0
YYD1_k127_3227477_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000002098 227.0
YYD1_k127_3227477_2 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000004711 120.0
YYD1_k127_3227477_3 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000008718 108.0
YYD1_k127_3227477_4 ABC-type transport system involved in multi-copper enzyme maturation - - - 0.0000000000000000000003737 109.0
YYD1_k127_3227477_5 Pilus assembly protein, PilO K02664 - - 0.00000000000000000002723 100.0
YYD1_k127_3227477_6 Tetratricopeptide repeat - - - 0.0000000001408 72.0
YYD1_k127_3227477_7 PFAM type II and III secretion system protein K02666 - - 0.0000000004 71.0
YYD1_k127_3227477_8 Prokaryotic N-terminal methylation motif K02650 - - 0.00000002824 62.0
YYD1_k127_3227477_9 COG3166 Tfp pilus assembly protein PilN K02663 - - 0.00000003956 64.0
YYD1_k127_3243504_0 Natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008204 484.0
YYD1_k127_3243504_1 MgtE intracellular N domain K02000,K05847 - 3.6.3.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000006947 270.0
YYD1_k127_3254616_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 511.0
YYD1_k127_3254616_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 480.0
YYD1_k127_3254616_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 341.0
YYD1_k127_3254616_3 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000155 169.0
YYD1_k127_3254616_4 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.0000000000000000000000000000000000001338 142.0
YYD1_k127_3254616_5 Ferrochelatase K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000008411 127.0
YYD1_k127_3275000_0 Sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000006622 241.0
YYD1_k127_3275000_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001398 248.0
YYD1_k127_3275000_2 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000002236 130.0
YYD1_k127_3275000_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000001076 117.0
YYD1_k127_3282966_0 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01502 - 3.5.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007733 325.0
YYD1_k127_3282966_1 - - - - 0.0000000000000000000000000000000000002162 144.0
YYD1_k127_3282966_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000003694 126.0
YYD1_k127_3282966_3 SnoaL-like domain - - - 0.00000000000000000000000000001093 126.0
YYD1_k127_3289923_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001923 287.0
YYD1_k127_3289923_1 extracellular matrix structural constituent - - - 0.000000000000000000006699 97.0
YYD1_k127_3289923_2 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000001539 102.0
YYD1_k127_3289923_3 Right handed beta helix region - - - 0.000006504 51.0
YYD1_k127_331955_0 NADH-quinone oxidoreductase chain L K00341 - 1.6.5.3 2.394e-204 661.0
YYD1_k127_331955_1 NAD binding K00333,K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 495.0
YYD1_k127_331955_10 PFAM NADH-ubiquinone plastoquinone oxidoreductase, chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000001371 139.0
YYD1_k127_331955_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000002042 119.0
YYD1_k127_331955_12 protein phosphatase 2C domain protein K20074 GO:0000287,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004647,GO:0004721,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0030145,GO:0030312,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043392,GO:0043412,GO:0043549,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045859,GO:0045936,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 3.1.3.16 0.0000000000000000000006567 100.0
YYD1_k127_331955_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005084 465.0
YYD1_k127_331955_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006717 361.0
YYD1_k127_331955_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000005161 241.0
YYD1_k127_331955_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000004346 164.0
YYD1_k127_331955_6 SpoU rRNA Methylase family - - - 0.00000000000000000000000000000000000000005569 158.0
YYD1_k127_331955_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000002386 154.0
YYD1_k127_331955_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03615,K05580 - 1.6.5.3 0.0000000000000000000000000000000000002896 147.0
YYD1_k127_331955_9 NADH dehydrogenase (ubiquinone) activity K00330,K05574 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.00000000000000000000000000000000001942 140.0
YYD1_k127_333333_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 471.0
YYD1_k127_333333_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 470.0
YYD1_k127_333333_2 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000005203 244.0
YYD1_k127_333333_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000001131 215.0
YYD1_k127_3339916_0 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 306.0
YYD1_k127_3339916_1 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001311 283.0
YYD1_k127_3339916_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000004839 214.0
YYD1_k127_3339916_3 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000005376 76.0
YYD1_k127_3355098_0 Domains REC, sigma54 interaction, HTH8 K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 413.0
YYD1_k127_3355098_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000007048 239.0
YYD1_k127_3355098_2 Fibronectin type 3 domain - - - 0.000007381 59.0
YYD1_k127_3356618_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000001289 226.0
YYD1_k127_3356618_1 DNA-templated transcription, initiation K03088 - - 0.000000000004606 71.0
YYD1_k127_3356618_2 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.0000000017 70.0
YYD1_k127_3378944_0 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 405.0
YYD1_k127_3378944_1 Zinc metalloprotease (Elastase) - - - 0.000000000000000000000000000000000000000000545 181.0
YYD1_k127_3378944_2 Ferredoxin - - - 0.000000000000005973 79.0
YYD1_k127_3401796_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 474.0
YYD1_k127_3401796_1 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004368 365.0
YYD1_k127_3401796_2 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 337.0
YYD1_k127_3401796_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000001738 197.0
YYD1_k127_3401796_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000009313 134.0
YYD1_k127_3401796_5 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000001206 71.0
YYD1_k127_3401796_6 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0001978 49.0
YYD1_k127_3410190_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 3.881e-213 688.0
YYD1_k127_3410190_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 348.0
YYD1_k127_3410190_2 polysaccharide biosynthetic process - - - 0.000000001256 71.0
YYD1_k127_344901_0 threonyl-tRNA aminoacylation K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.332e-197 634.0
YYD1_k127_344901_1 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000000000000000000001033 205.0
YYD1_k127_344901_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000001708 91.0
YYD1_k127_3467591_0 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 488.0
YYD1_k127_3467591_1 SNARE associated Golgi protein K03975,K19302 - 3.6.1.27 0.0000000000002612 71.0
YYD1_k127_3474287_0 Catalyzes the interconversion of ornithine to glutamate semialdehyde K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 315.0
YYD1_k127_3474287_1 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002739 270.0
YYD1_k127_3474287_2 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000138 169.0
YYD1_k127_3475356_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1429.0
YYD1_k127_3475356_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 382.0
YYD1_k127_3475356_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001999 241.0
YYD1_k127_3483173_0 Putative esterase K07214 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 428.0
YYD1_k127_3483173_1 Belongs to the D-alanine--D-alanine ligase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008427 391.0
YYD1_k127_3483173_2 Belongs to the peptidase S51 family - - - 0.0000000000000000000000000000000000000000000001408 177.0
YYD1_k127_3483173_3 Putative esterase - - - 0.000000000000000000000000000004214 126.0
YYD1_k127_3498484_0 Enoyl-CoA hydratase/isomerase K01661 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0008150,GO:0008152,GO:0008935,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0042180,GO:0042181,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:0071890,GO:1901576,GO:1901661,GO:1901663 4.1.3.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006786 422.0
YYD1_k127_3498484_1 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
YYD1_k127_3498484_2 Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily K01911 - 6.2.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000006163 273.0
YYD1_k127_3498484_3 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.00000000000000000000000000000000000000000000000000000000001124 217.0
YYD1_k127_3498484_4 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.0000000000000000000000000000000000000000000000005581 189.0
YYD1_k127_3498960_0 decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 370.0
YYD1_k127_3498960_1 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000007664 194.0
YYD1_k127_3498960_2 Belongs to the peptidase S8 family K01337,K01387,K05994,K08604,K14645,K20276 - 3.4.11.10,3.4.21.50,3.4.24.25,3.4.24.3 0.00000003896 63.0
YYD1_k127_3530102_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 2.144e-219 688.0
YYD1_k127_3530102_1 cytochrome c K02305 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000003821 192.0
YYD1_k127_3530102_2 glyoxalase III activity - - - 0.0000000000000000000000000003634 124.0
YYD1_k127_3530629_0 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 458.0
YYD1_k127_3530629_1 serine-type endopeptidase activity K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000002371 274.0
YYD1_k127_3530629_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000002168 264.0
YYD1_k127_3530629_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000001273 191.0
YYD1_k127_3530629_4 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000001401 110.0
YYD1_k127_3535317_0 Glycosyltransferase 36 associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007333 591.0
YYD1_k127_3535317_1 Glycogen debranching enzyme N terminal - - - 0.0000000000003417 69.0
YYD1_k127_3540626_0 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 466.0
YYD1_k127_3540626_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 437.0
YYD1_k127_3540626_2 Peptidase M56 - - - 0.0000000000000000000000000000000000000000007154 174.0
YYD1_k127_3540626_3 Belongs to the ClpA ClpB family K03695,K03696 - - 0.0000000000000000000000000000000008964 151.0
YYD1_k127_3540626_4 Guanosine polyphosphate pyrophosphohydrolases synthetases - - - 0.0000000000000000000000000000009027 133.0
YYD1_k127_3540626_5 peptidase - - - 0.00000000000000000000000000005773 124.0
YYD1_k127_3540626_6 NlpC P60 family - - - 0.0000000000000000000006472 107.0
YYD1_k127_3540626_7 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000008934 78.0
YYD1_k127_3540626_8 - - - - 0.00004157 53.0
YYD1_k127_3565178_0 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 370.0
YYD1_k127_3565178_1 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005315 294.0
YYD1_k127_3565178_2 Domain of unknown function (DUF4340) - - - 0.00007329 54.0
YYD1_k127_3593831_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 619.0
YYD1_k127_3593831_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 480.0
YYD1_k127_3593831_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 426.0
YYD1_k127_3593831_3 domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000001967 194.0
YYD1_k127_3593831_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01450,K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.31,3.5.1.88 0.000000000000000000000000000000000000000000000004964 177.0
YYD1_k127_3593831_5 COG1956 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000003202 77.0
YYD1_k127_3611776_0 Subtilase family K13276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 339.0
YYD1_k127_3611776_1 extracellular matrix structural constituent - - - 0.000000000005509 80.0
YYD1_k127_3611776_2 subunit of a heme lyase K02200 - - 0.0000000003141 66.0
YYD1_k127_361484_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 479.0
YYD1_k127_361484_1 aminopeptidase activity - - - 0.0003357 51.0
YYD1_k127_3634045_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008666 336.0
YYD1_k127_3634045_1 outer membrane efflux protein - - - 0.0000000000000000000000000000000007073 149.0
YYD1_k127_3634045_2 AcrB/AcrD/AcrF family K03296,K07788,K07789,K18138 - - 0.00000000000000000002505 92.0
YYD1_k127_3681520_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000001207 160.0
YYD1_k127_3681520_1 biosynthesis protein - - - 0.00000000000000000000000000001216 134.0
YYD1_k127_3685629_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 4.303e-216 687.0
YYD1_k127_3685629_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000001536 247.0
YYD1_k127_3685629_2 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives - - - 0.0001124 53.0
YYD1_k127_3713546_0 tail specific protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 342.0
YYD1_k127_3713546_1 Aldehyde dehydrogenase family - - - 0.000000000000000000000005213 107.0
YYD1_k127_372451_0 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000306 260.0
YYD1_k127_372451_1 Penicillin-binding protein 2 K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000005476 183.0
YYD1_k127_375635_0 Peptidase M16C associated K06972 - - 1.45e-212 699.0
YYD1_k127_3768107_0 Creatinase/Prolidase N-terminal domain K01262,K02027 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007791 572.0
YYD1_k127_3768107_1 polysaccharide catabolic process - - - 0.0002874 51.0
YYD1_k127_3768342_0 Phosphate transport system permease K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005476 372.0
YYD1_k127_3768342_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007421 339.0
YYD1_k127_3768342_2 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 338.0
YYD1_k127_3768342_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 329.0
YYD1_k127_3768342_4 transmembrane transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001017 278.0
YYD1_k127_3768342_5 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000001286 177.0
YYD1_k127_3768342_6 phosphate-selective porin O and P - - - 0.000000000000000001395 94.0
YYD1_k127_3796288_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.914e-211 674.0
YYD1_k127_3796288_1 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008557 497.0
YYD1_k127_3796288_10 competence protein - - - 0.0000000000000000001604 92.0
YYD1_k127_3796288_11 Lipopolysaccharide-assembly, LptC-related - - - 0.0000000003462 70.0
YYD1_k127_3796288_2 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.27,1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 376.0
YYD1_k127_3796288_3 lipopolysaccharide-transporting ATPase activity K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 308.0
YYD1_k127_3796288_4 DAHP synthetase I family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000001688 273.0
YYD1_k127_3796288_5 arabinose-5-phosphate isomerase activity K01627,K03281,K06041 - 2.5.1.55,5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000001046 279.0
YYD1_k127_3796288_6 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000001282 218.0
YYD1_k127_3796288_7 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000001139 204.0
YYD1_k127_3796288_8 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000005214 126.0
YYD1_k127_3796288_9 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000157 117.0
YYD1_k127_3799602_0 - - - - 0.00000000000000000000000000000000008667 137.0
YYD1_k127_3799602_1 RNA recognition motif - - - 0.0000000000000000000000000000003093 126.0
YYD1_k127_3799602_2 PAP2 superfamily - - - 0.0000000000000000002555 98.0
YYD1_k127_3806977_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 1.644e-201 642.0
YYD1_k127_381229_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005638 428.0
YYD1_k127_3813636_0 Peptidase M16 inactive domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 429.0
YYD1_k127_3813636_1 Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001603 274.0
YYD1_k127_3813636_2 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000003985 174.0
YYD1_k127_3820283_0 Glycosyltransferase like family 2 K11936 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003325 449.0
YYD1_k127_3820283_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 401.0
YYD1_k127_3820283_2 Propeptide_C25 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 402.0
YYD1_k127_3820283_3 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 364.0
YYD1_k127_3820283_4 Phosphoesterase, PA-phosphatase related - - - 0.00000000000000000000000000000000000000000008501 181.0
YYD1_k127_3820283_5 Belongs to the UPF0434 family K09791 - - 0.00000000000000002581 84.0
YYD1_k127_3825041_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 2.19e-231 724.0
YYD1_k127_3825041_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 5.775e-227 714.0
YYD1_k127_3825041_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000002141 242.0
YYD1_k127_3825041_3 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.0000000000000000000000000000000000000000004175 173.0
YYD1_k127_3825041_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000003848 135.0
YYD1_k127_3825041_5 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000558 112.0
YYD1_k127_3825041_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000002094 116.0
YYD1_k127_3825041_7 Redoxin K03564 - 1.11.1.15 0.0000000002572 68.0
YYD1_k127_3825041_8 Urate oxidase N-terminal - - - 0.000008018 58.0
YYD1_k127_3825041_9 -O-antigen K18814 - - 0.0001861 53.0
YYD1_k127_3834285_0 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 305.0
YYD1_k127_3834285_1 Zn-dependent proteases and their inactivated homologs K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001278 299.0
YYD1_k127_3834285_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000227 286.0
YYD1_k127_3834285_3 amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000005831 242.0
YYD1_k127_383751_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975,K20427 - 2.7.7.27,2.7.7.91 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003205 421.0
YYD1_k127_383751_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 399.0
YYD1_k127_383751_2 Belongs to the bacterial plant glucose-1-phosphate adenylyltransferase family K00975,K20427 - 2.7.7.27,2.7.7.91 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895 358.0
YYD1_k127_383751_3 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 357.0
YYD1_k127_383751_4 NmrA-like family K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 287.0
YYD1_k127_383751_5 Putative cyclase - - - 0.00000000000000000001405 107.0
YYD1_k127_3887018_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 589.0
YYD1_k127_3887018_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 424.0
YYD1_k127_3887018_2 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000111 280.0
YYD1_k127_3887018_3 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000003279 173.0
YYD1_k127_3890224_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 606.0
YYD1_k127_3890224_1 TIGRFAM siroheme synthase K02304 - 1.3.1.76,4.99.1.4 0.00000000000000000000000000000000000003441 155.0
YYD1_k127_3890224_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000002179 103.0
YYD1_k127_3894762_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000445 212.0
YYD1_k127_3894762_1 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000000000001732 197.0
YYD1_k127_3959549_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 505.0
YYD1_k127_3959549_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 424.0
YYD1_k127_3959549_2 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000000000000000000000000000000000000000000000000001108 216.0
YYD1_k127_3959549_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000001977 173.0
YYD1_k127_396073_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 318.0
YYD1_k127_396073_1 Ribosome recycling factor K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000001352 219.0
YYD1_k127_396073_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000006981 203.0
YYD1_k127_396073_3 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000002202 139.0
YYD1_k127_396073_4 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000000000005536 128.0
YYD1_k127_3966828_0 Belongs to the ClpA ClpB family K03696 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006572 620.0
YYD1_k127_3966828_1 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 312.0
YYD1_k127_3966828_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003687 246.0
YYD1_k127_3966828_3 TIGRFAM lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000002147 187.0
YYD1_k127_3966828_4 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.0000000000000000000000000000001647 130.0
YYD1_k127_3973884_0 Alpha-2-Macroglobulin K06894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003154 299.0
YYD1_k127_3991800_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 297.0
YYD1_k127_3991800_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000178 80.0
YYD1_k127_3991800_2 Thioredoxin-like - - - 0.00000005877 64.0
YYD1_k127_39964_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 311.0
YYD1_k127_39964_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 310.0
YYD1_k127_39964_2 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004498 284.0
YYD1_k127_39964_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003088 265.0
YYD1_k127_39964_4 PFAM outer membrane efflux protein - - - 0.000000003923 66.0
YYD1_k127_4005685_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000004193 193.0
YYD1_k127_4005685_1 PFAM ABC transporter related K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000001364 182.0
YYD1_k127_4005685_2 PFAM periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000003402 184.0
YYD1_k127_4005685_3 - - - - 0.0000000002122 66.0
YYD1_k127_4016357_0 NfeD-like C-terminal, partner-binding K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 377.0
YYD1_k127_4016357_1 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 338.0
YYD1_k127_4016357_2 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 317.0
YYD1_k127_4016357_3 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005898 289.0
YYD1_k127_4016357_4 Conserved protein of dim6 ntab family - - - 0.0000000000000000000000000000000000000000000000006481 186.0
YYD1_k127_4016357_5 Evidence 5 No homology to any previously reported sequences - - - 0.00000000109 70.0
YYD1_k127_4016357_6 - - - - 0.00000008048 57.0
YYD1_k127_4048630_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009359 269.0
YYD1_k127_4048630_1 peptidyl-tyrosine sulfation - - - 0.000000000000000001656 90.0
YYD1_k127_4048630_2 cobalamin-transporting ATPase activity - - - 0.0006165 53.0
YYD1_k127_4053359_0 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 578.0
YYD1_k127_4053359_1 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005317 355.0
YYD1_k127_4053359_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000001495 262.0
YYD1_k127_4077412_0 GDP-dissociation inhibitor activity. It is involved in the biological process described with regulation of G-protein coupled receptor protein signaling pathway K15837,K15839 GO:0000132,GO:0000139,GO:0000226,GO:0000278,GO:0000922,GO:0001709,GO:0001965,GO:0003674,GO:0005092,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007186,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0007399,GO:0007400,GO:0007405,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008356,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010506,GO:0010508,GO:0010564,GO:0010638,GO:0010646,GO:0012505,GO:0014016,GO:0014017,GO:0015630,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0017145,GO:0019222,GO:0019904,GO:0022008,GO:0022402,GO:0023051,GO:0023052,GO:0030010,GO:0030154,GO:0030234,GO:0030695,GO:0031090,GO:0031291,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0031984,GO:0032091,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0034260,GO:0035556,GO:0036445,GO:0040001,GO:0042175,GO:0042802,GO:0043085,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043547,GO:0043621,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045165,GO:0045167,GO:0045175,GO:0045177,GO:0045179,GO:0045185,GO:0045787,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050896,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051235,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051345,GO:0051346,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051653,GO:0051656,GO:0051657,GO:0051661,GO:0051716,GO:0051726,GO:0055057,GO:0055059,GO:0060236,GO:0060259,GO:0060341,GO:0060589,GO:0061351,GO:0061842,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070840,GO:0071840,GO:0071944,GO:0072089,GO:0072686,GO:0090068,GO:0090169,GO:0090224,GO:0097431,GO:0097574,GO:0097575,GO:0098588,GO:0098722,GO:0098772,GO:0098791,GO:0098827,GO:0099568,GO:0099738,GO:1902115,GO:1902117,GO:1902850,GO:1903047,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1904424,GO:1904776,GO:1904778,GO:1905097,GO:1905098,GO:1905832 - 0.000000000000001593 91.0
YYD1_k127_4078538_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 4.975e-217 679.0
YYD1_k127_4078538_1 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 600.0
YYD1_k127_4078538_2 glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 552.0
YYD1_k127_4078538_3 transmembrane transport - - - 0.000000000000000000000000000000000000000000000000000000000009265 214.0
YYD1_k127_4081394_0 Thymidylate synthase complementing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 471.0
YYD1_k127_4081394_1 Belongs to the peptidase S11 family K01286,K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000001223 266.0
YYD1_k127_4081394_2 Belongs to the peptidase S11 family K01286,K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000001335 229.0
YYD1_k127_4081394_3 PFAM isochorismatase hydrolase - - - 0.0000000000000000000000000000000000000000000399 170.0
YYD1_k127_4081394_4 Methyltransferase K00587 - 2.1.1.100 0.0000000000000000005756 94.0
YYD1_k127_4083129_0 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002264 382.0
YYD1_k127_4083129_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000003159 152.0
YYD1_k127_4083129_2 tetratricopeptide repeat - - - 0.0000000000000000211 93.0
YYD1_k127_4083129_3 YacP-like NYN domain K06962 - - 0.000002815 57.0
YYD1_k127_4088285_0 Membrane protein, TerC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 290.0
YYD1_k127_4088285_1 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000004765 235.0
YYD1_k127_4088285_2 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000006562 101.0
YYD1_k127_4088285_3 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000001446 92.0
YYD1_k127_4088285_4 Thioredoxin - - - 0.0000000000000002306 89.0
YYD1_k127_4088285_5 cell redox homeostasis K03671 - - 0.000000000004529 77.0
YYD1_k127_408991_0 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 508.0
YYD1_k127_408991_1 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005548 295.0
YYD1_k127_4099736_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 335.0
YYD1_k127_4099736_1 metallophosphoesterase K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 316.0
YYD1_k127_4099736_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006543 284.0
YYD1_k127_4099736_3 Belongs to the FPP GGPP synthase family K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000004567 211.0
YYD1_k127_4099736_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000003799 63.0
YYD1_k127_4111031_0 methionyl-tRNA aminoacylation K01874,K01890,K04566,K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.10,6.1.1.20,6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005418 497.0
YYD1_k127_4111031_1 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004525 277.0
YYD1_k127_4111031_2 - - - - 0.00000000000000000000000000000000000000005708 159.0
YYD1_k127_4117968_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 5.326e-212 672.0
YYD1_k127_4117968_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 445.0
YYD1_k127_4117968_2 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006413 337.0
YYD1_k127_4117968_3 Bacterial-like globin K06886 - - 0.0000000000000000000000000000000000000000000000007495 182.0
YYD1_k127_4117968_4 Inositol monophosphatase family K01092,K05602 GO:0000105,GO:0003674,GO:0003824,GO:0004401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008934,GO:0009058,GO:0009987,GO:0010125,GO:0010126,GO:0016020,GO:0016053,GO:0016137,GO:0016138,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042578,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0052745,GO:0052803,GO:0052834,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659 3.1.3.15,3.1.3.25 0.00002588 57.0
YYD1_k127_4132174_0 Sodium:solute symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 619.0
YYD1_k127_4132174_1 N-acetylglucosaminylinositol deacetylase activity K22136 - - 0.00000000000000000000000000000000000000000000000000000004084 199.0
YYD1_k127_4132174_2 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000001091 197.0
YYD1_k127_4154997_0 e3 binding domain K00658,K09699 - 2.3.1.168,2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 374.0
YYD1_k127_4154997_1 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006743 314.0
YYD1_k127_4154997_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000001126 229.0
YYD1_k127_4154997_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000001161 149.0
YYD1_k127_4154997_4 B3/4 domain K01890 - 6.1.1.20 0.0000000000004392 73.0
YYD1_k127_4155990_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K03918 - 2.6.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 522.0
YYD1_k127_4155990_1 L-asparaginase II - - - 0.0000000000000000004923 102.0
YYD1_k127_4155990_2 membrane K08972 - - 0.00000000000000001098 91.0
YYD1_k127_4166236_0 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 379.0
YYD1_k127_4166236_1 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008287 376.0
YYD1_k127_4166236_2 Protein kinase domain K08884 - 2.7.11.1 0.0000000000000000000605 94.0
YYD1_k127_4174151_0 L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp K01876 - 6.1.1.12 9.119e-195 624.0
YYD1_k127_4174151_1 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 327.0
YYD1_k127_4174151_2 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 313.0
YYD1_k127_4174151_3 metal-dependent phosphohydrolase 7TM intracellular region K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 307.0
YYD1_k127_4174151_4 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000005443 266.0
YYD1_k127_4174151_5 COG2199 FOG GGDEF domain - - - 0.00000000000000000000000000007783 131.0
YYD1_k127_4174151_6 PTS fructose transporter subunit IIA K02768 - 2.7.1.202 0.0000000000000000000000000614 112.0
YYD1_k127_4174151_7 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000002094 92.0
YYD1_k127_4174151_8 VanZ like family - - - 0.0000000002654 71.0
YYD1_k127_4174151_9 Belongs to the 5'-nucleotidase family K11751 - 3.1.3.5,3.6.1.45 0.000000000686 66.0
YYD1_k127_4176081_0 major pilin protein fima - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001131 255.0
YYD1_k127_4176081_1 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000001592 222.0
YYD1_k127_4176081_2 - - - - 0.00000000000000000000000000000000000000000000000405 183.0
YYD1_k127_4176081_3 - - - - 0.0000000005209 61.0
YYD1_k127_4180269_0 Domain of unknown function (DUF4143) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 457.0
YYD1_k127_4180269_1 Transmembrane secretion effector K08225 - - 0.0000000000000000000000000000000000000000000000000000000001006 220.0
YYD1_k127_4180269_2 EamA-like transporter family - - - 0.000000000000000000000000002178 123.0
YYD1_k127_4180269_3 chromosome segregation K03497 - - 0.0000000000000003239 85.0
YYD1_k127_4194019_0 PFAM Cysteine-rich secretory protein family - - - 0.000000000000000000000000000000000000000000000000000468 193.0
YYD1_k127_4194019_1 DsrC like protein K11179 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000001573 152.0
YYD1_k127_4194019_2 nitrate reductase activity - - - 0.00000000000000000000000000006315 124.0
YYD1_k127_4199955_0 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000001259 230.0
YYD1_k127_4199955_1 Ser Thr phosphatase family protein K03547 - - 0.000000000000000000000000000000000000000000000000000000002072 215.0
YYD1_k127_4199955_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000001222 181.0
YYD1_k127_4199955_3 EVE domain - - - 0.00000000000000000000000000000000000000002287 157.0
YYD1_k127_4199955_4 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000004859 83.0
YYD1_k127_4199955_5 peroxiredoxin activity K03564,K07638 - 1.11.1.15,2.7.13.3 0.000002238 51.0
YYD1_k127_4199955_6 domain protein K20276 - - 0.00007189 53.0
YYD1_k127_4222807_0 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000276 288.0
YYD1_k127_4222807_1 - - - - 0.000000000000000000000000000000000000000000001988 177.0
YYD1_k127_4237568_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 428.0
YYD1_k127_4237568_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 320.0
YYD1_k127_4237568_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000278 252.0
YYD1_k127_4237568_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000003043 189.0
YYD1_k127_4237568_4 Preprotein translocase, YajC subunit K03210 - - 0.0000000000000000009718 91.0
YYD1_k127_4237568_5 Protein of unknown function (DUF2905) - - - 0.0000000000000001681 83.0
YYD1_k127_4251338_0 Rhomboid family - - - 0.00000000000176 69.0
YYD1_k127_425858_0 Protein of unknown function (DUF354) K09726 - - 0.00000000000000000000000000000000000000000000000000000000000000002126 239.0
YYD1_k127_425858_1 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.000000000000000000000000000001163 137.0
YYD1_k127_4294321_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 504.0
YYD1_k127_4294321_1 Sigma-54 interaction domain K15836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000056 279.0
YYD1_k127_4294321_2 Protein of unknown function (DUF2400) - - - 0.000000000000000000000000000000000000000000000000000000000001898 217.0
YYD1_k127_4296231_0 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 533.0
YYD1_k127_4296231_1 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 361.0
YYD1_k127_4296231_2 EamA-like transporter family - - - 0.0000000000000000000000000000009378 137.0
YYD1_k127_4296231_3 Putative diguanylate phosphodiesterase - - - 0.000000003675 61.0
YYD1_k127_4332088_0 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 387.0
YYD1_k127_4332088_1 Domain of unknown function (DUF4331) - - - 0.000000000000000000000000000000000000000000002309 173.0
YYD1_k127_4332088_2 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000001073 168.0
YYD1_k127_4332088_3 oxidoreductase activity K01181,K08651 - 3.2.1.8,3.4.21.66 0.00002192 53.0
YYD1_k127_4332088_4 PFAM Methyltransferase type - - - 0.0002787 48.0
YYD1_k127_4339864_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 529.0
YYD1_k127_4339864_1 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 411.0
YYD1_k127_4353226_0 drug transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 359.0
YYD1_k127_4353226_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000003498 182.0
YYD1_k127_4353226_2 Fibronectin type 3 domain - - - 0.000001061 57.0
YYD1_k127_4354436_0 PFAM AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 548.0
YYD1_k127_4359505_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203 501.0
YYD1_k127_4359505_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 305.0
YYD1_k127_4359505_2 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000002085 269.0
YYD1_k127_4359505_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000009123 185.0
YYD1_k127_4359505_4 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000001283 179.0
YYD1_k127_4359505_5 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000008268 170.0
YYD1_k127_4359505_6 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000009739 169.0
YYD1_k127_4359505_7 Ribosomal protein S9/S16 K02996 - - 0.0000000000000000000000000000000007669 135.0
YYD1_k127_4361239_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 295.0
YYD1_k127_4361239_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004893 244.0
YYD1_k127_4361239_2 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000008951 175.0
YYD1_k127_4361239_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000002122 89.0
YYD1_k127_437604_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 4.763e-282 910.0
YYD1_k127_437604_1 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 418.0
YYD1_k127_437604_2 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 318.0
YYD1_k127_437604_3 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002774 287.0
YYD1_k127_437604_4 Propeptide_C25 - - - 0.0000000000000000000000000000000000006245 163.0
YYD1_k127_437604_5 Protein of unknown function (DUF971) - - - 0.00000000000000000001285 98.0
YYD1_k127_437604_6 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000007034 59.0
YYD1_k127_4384134_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0 1439.0
YYD1_k127_4384134_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000139 203.0
YYD1_k127_4384134_2 rRNA binding K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000005077 123.0
YYD1_k127_439970_0 PFAM Diacylglycerol kinase, catalytic - - - 0.00000000000000000001038 108.0
YYD1_k127_439970_1 Aminotransferase class I and II - - - 0.00000000000012 83.0
YYD1_k127_439970_2 Phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.0000000592 63.0
YYD1_k127_4407608_0 Belongs to the PEP-utilizing enzyme family K01006,K22424 - 2.7.3.13,2.7.9.1 9.932e-289 904.0
YYD1_k127_4407608_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000232 254.0
YYD1_k127_4407608_2 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.00000000005669 73.0
YYD1_k127_4407608_3 Putative glutamine amidotransferase - - - 0.00001773 54.0
YYD1_k127_4425010_0 Short chain fatty acid transporter K02106 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 444.0
YYD1_k127_4425010_1 palmitoyl-(protein) hydrolase activity K06999 - - 0.0000000000000000000000000000000000000000000032 182.0
YYD1_k127_4425010_2 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000002568 146.0
YYD1_k127_4425010_3 Class II Aldolase and Adducin N-terminal domain K00068 - 1.1.1.140 0.0004055 49.0
YYD1_k127_4430539_0 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 515.0
YYD1_k127_4430539_1 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 377.0
YYD1_k127_4430539_2 glycogen (starch) synthase activity K00703,K00754 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 336.0
YYD1_k127_4430539_3 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000001683 226.0
YYD1_k127_4430539_4 - - - - 0.00000000000000000000000000000000000000000000000000000000005677 211.0
YYD1_k127_4430539_5 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000001462 207.0
YYD1_k127_4430539_6 Glyoxalase-like domain K06996 - - 0.000000000000000000000000000000000000000003453 160.0
YYD1_k127_4440087_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005857 436.0
YYD1_k127_4440087_1 Belongs to the ATCase OTCase family K00608,K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 409.0
YYD1_k127_4440087_2 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000005176 250.0
YYD1_k127_4440087_3 Tetratricopeptide repeat - - - 0.0000000000001235 85.0
YYD1_k127_4474119_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 459.0
YYD1_k127_4474119_1 Coenzyme A transferase K01027,K01028,K01034 - 2.8.3.5,2.8.3.8,2.8.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009655 335.0
YYD1_k127_4474119_10 ribosome binding K02860 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000001004 109.0
YYD1_k127_4474119_11 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000005302 87.0
YYD1_k127_4474119_12 Uncharacterised protein family UPF0102 K07460 - - 0.00000000000000006628 90.0
YYD1_k127_4474119_2 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004723 276.0
YYD1_k127_4474119_3 Belongs to the RNA methyltransferase TrmD family K00554,K01770 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000001763 247.0
YYD1_k127_4474119_4 B12 binding domain K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000004388 188.0
YYD1_k127_4474119_5 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000006038 187.0
YYD1_k127_4474119_6 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000001429 186.0
YYD1_k127_4474119_7 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000003618 166.0
YYD1_k127_4474119_8 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000005936 151.0
YYD1_k127_4474119_9 Belongs to the UPF0109 family K06960 - - 0.000000000000000000000000001307 114.0
YYD1_k127_4490284_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 478.0
YYD1_k127_4490284_1 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 329.0
YYD1_k127_4490284_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000001591 266.0
YYD1_k127_4490284_3 Putative modulator of DNA gyrase - - - 0.0000000000000000000000000000000000000000000000000000002729 206.0
YYD1_k127_4490284_4 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000002869 207.0
YYD1_k127_4490284_5 - - - - 0.00000000000000000000005128 116.0
YYD1_k127_4490284_6 Peptidase M56 - - - 0.00000000000001517 87.0
YYD1_k127_4493144_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000001835 198.0
YYD1_k127_4493144_1 Zinc metalloprotease (Elastase) - - - 0.000000000000000000000000000000000000000003491 179.0
YYD1_k127_4493144_2 - - - - 0.000000000000000000002162 111.0
YYD1_k127_4509429_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 387.0
YYD1_k127_4509429_1 PFAM ATP-binding region ATPase domain protein K07709 - 2.7.13.3 0.000000000000000000000000000000000000000000000001005 187.0
YYD1_k127_4527825_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1718.0
YYD1_k127_4527825_1 oligosaccharyl transferase activity - - - 0.0000000000000000000001651 110.0
YYD1_k127_4549233_0 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 308.0
YYD1_k127_4549233_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K00982,K03564 - 1.11.1.15,2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000001097 165.0
YYD1_k127_4549233_2 diguanylate cyclase - - - 0.0000000000000000000000000000000109 141.0
YYD1_k127_4549233_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000001741 104.0
YYD1_k127_4549233_4 overlaps another CDS with the same product name - - - 0.0000000000000000168 86.0
YYD1_k127_4573740_0 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003487 477.0
YYD1_k127_4573740_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 379.0
YYD1_k127_4573740_2 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 366.0
YYD1_k127_4573740_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000626 83.0
YYD1_k127_4573740_4 Outer membrane lipoprotein K05807 - - 0.000000000001062 81.0
YYD1_k127_4573740_5 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000001657 51.0
YYD1_k127_4578509_0 ABC-2 family transporter protein - - - 0.00000000000000000000000000000000000000005045 172.0
YYD1_k127_4578509_1 ABC-2 type transporter K01992 - - 0.00000000005983 72.0
YYD1_k127_4578509_2 MacB-like periplasmic core domain K02004 - - 0.00001148 48.0
YYD1_k127_4578509_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00006901 54.0
YYD1_k127_4580897_0 AcrB/AcrD/AcrF family K03296 - - 1.207e-240 796.0
YYD1_k127_4580897_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 610.0
YYD1_k127_4580897_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000001175 179.0
YYD1_k127_4580897_3 LVIVD repeat K01179 - 3.2.1.4 0.00000005334 55.0
YYD1_k127_4611618_0 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 398.0
YYD1_k127_4611618_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0000000000000000000456 93.0
YYD1_k127_4611618_2 Endonuclease Exonuclease Phosphatase - - - 0.00000000000006097 84.0
YYD1_k127_4623533_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 350.0
YYD1_k127_4623533_1 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.0000000000000000000000000000000000000000000000002141 187.0
YYD1_k127_4623533_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000006357 130.0
YYD1_k127_4623533_3 CoA-binding protein K06929 - - 0.000000000000000000000000000006176 125.0
YYD1_k127_4623533_4 PFAM Glycosyl transferase, group 1 - - - 0.0005067 45.0
YYD1_k127_4629783_0 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006843 505.0
YYD1_k127_4629783_1 1-Cys peroxiredoxin K11188 - 1.11.1.15,1.11.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 319.0
YYD1_k127_4629783_2 Male sterility protein K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000248 279.0
YYD1_k127_4629783_3 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000004231 251.0
YYD1_k127_4629783_4 Diacylglycerol kinase catalytic domain (presumed) - - - 0.000000000000000000000000000000000001545 150.0
YYD1_k127_4629783_5 Protein of unknown function, DUF393 - - - 0.000000000000000000000001447 107.0
YYD1_k127_4629783_6 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000002384 104.0
YYD1_k127_4629783_7 Enoyl-CoA hydratase/isomerase - - - 0.000000000000002943 80.0
YYD1_k127_4629783_8 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0002762 51.0
YYD1_k127_4634899_0 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 416.0
YYD1_k127_4634899_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008687 313.0
YYD1_k127_4634899_10 Carboxymuconolactone decarboxylase family - - - 0.0000000000000001443 82.0
YYD1_k127_4634899_11 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000005388 85.0
YYD1_k127_4634899_12 Fungalysin metallopeptidase (M36) - - - 0.0001884 47.0
YYD1_k127_4634899_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000001032 265.0
YYD1_k127_4634899_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000004016 236.0
YYD1_k127_4634899_4 Transcriptional regulator, TraR DksA family K06204 - - 0.000000000000000000000000000006051 123.0
YYD1_k127_4634899_5 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000002999 115.0
YYD1_k127_4634899_6 antisigma factor binding K04749 - - 0.0000000000000000008762 98.0
YYD1_k127_4634899_7 PFAM DivIVA K04074 - - 0.0000000000000000009234 97.0
YYD1_k127_4634899_8 Carboxymuconolactone decarboxylase family - - - 0.000000000000000003686 87.0
YYD1_k127_4634899_9 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000007335 91.0
YYD1_k127_4640767_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 451.0
YYD1_k127_4640767_1 AcrB/AcrD/AcrF family K07787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 351.0
YYD1_k127_4640767_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 354.0
YYD1_k127_4640767_3 Domains HisKA, HATPase_c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002879 280.0
YYD1_k127_4640767_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000244 178.0
YYD1_k127_4640860_0 Surface antigen K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 467.0
YYD1_k127_4640860_1 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005656 436.0
YYD1_k127_4653589_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 2.083e-222 700.0
YYD1_k127_4653589_1 PFAM PKD domain containing protein K11751 - 3.1.3.5,3.6.1.45 0.00000000000000000000000000000000004911 151.0
YYD1_k127_4657757_0 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000001026 207.0
YYD1_k127_4657757_1 COG1002 Type II restriction enzyme, methylase subunits - - - 0.0000000000000000000000000000000000000000001064 184.0
YYD1_k127_4657757_2 Endonuclease I K07004 - - 0.00000008476 62.0
YYD1_k127_4657757_3 Type II restriction enzyme, methylase subunits - - - 0.00009993 56.0
YYD1_k127_4671306_0 quinone binding K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009765 377.0
YYD1_k127_4671306_1 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 357.0
YYD1_k127_4671306_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000396 164.0
YYD1_k127_4671306_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000001217 103.0
YYD1_k127_4671306_4 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.000000000000001386 84.0
YYD1_k127_4671306_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000002126 81.0
YYD1_k127_4689633_0 Putative modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000007735 140.0
YYD1_k127_4689633_1 Ethylbenzene dehydrogenase - - - 0.00000000003599 74.0
YYD1_k127_4690996_0 B12 binding domain - - - 0.000000000000000000000000000000001048 133.0
YYD1_k127_4690996_1 helix_turn_helix, Lux Regulon K03556 - - 0.00000000000000000000000004795 123.0
YYD1_k127_4690996_2 exo-alpha-(2->6)-sialidase activity - - - 0.000000000009286 78.0
YYD1_k127_4690996_3 FlgD Ig-like domain - - - 0.000000002308 70.0
YYD1_k127_4690996_4 - - - - 0.00005166 50.0
YYD1_k127_4738694_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006742 269.0
YYD1_k127_4738694_1 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000007307 198.0
YYD1_k127_4738694_2 Ferritin-like domain K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000001153 196.0
YYD1_k127_4738694_3 lyase activity - - - 0.000000000000000000000000000000000000000115 171.0
YYD1_k127_4738694_4 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000002552 135.0
YYD1_k127_4738694_5 PQQ enzyme repeat - - - 0.000000008343 69.0
YYD1_k127_4741290_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 - 3.605e-221 708.0
YYD1_k127_4741290_1 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 522.0
YYD1_k127_4741290_10 2 iron, 2 sulfur cluster binding - - - 0.00000000000000000000000008402 114.0
YYD1_k127_4741290_11 of nitrite reductase and ring-hydroxylating K05710 - - 0.0000000000000000000000006505 111.0
YYD1_k127_4741290_12 COGs COG2151 metal-sulfur cluster biosynthetic protein - - - 0.000000000000000000005244 102.0
YYD1_k127_4741290_13 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000002515 60.0
YYD1_k127_4741290_14 HNH endonuclease - - - 0.00000257 50.0
YYD1_k127_4741290_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009618 312.0
YYD1_k127_4741290_3 ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 302.0
YYD1_k127_4741290_4 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002705 300.0
YYD1_k127_4741290_5 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000001301 222.0
YYD1_k127_4741290_6 TIGRFAM FeS assembly protein SufD K09015 - - 0.000000000000000000000000000000000000000000000000000005912 207.0
YYD1_k127_4741290_7 - - - - 0.0000000000000000000000000000000000000000000000000122 188.0
YYD1_k127_4741290_8 - - - - 0.000000000000000000000000000000000000000000007231 171.0
YYD1_k127_4741290_9 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000003046 143.0
YYD1_k127_4778451_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 9.956e-243 773.0
YYD1_k127_4778451_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005996 342.0
YYD1_k127_4778451_2 Phage integrase, N-terminal SAM-like domain K03733,K04763 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000001042 226.0
YYD1_k127_4778451_3 response to copper ion K07156 - - 0.000000000000001854 89.0
YYD1_k127_4778451_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.000000000004158 66.0
YYD1_k127_4780570_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 507.0
YYD1_k127_4780570_1 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000366 126.0
YYD1_k127_4795260_0 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006489 267.0
YYD1_k127_4795260_1 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008187 267.0
YYD1_k127_4795260_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000002755 247.0
YYD1_k127_4795260_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000001437 106.0
YYD1_k127_4881658_0 beta-lactamase K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008117 304.0
YYD1_k127_4881658_1 domain, Protein K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000001654 246.0
YYD1_k127_4881658_2 cellulose binding K00505 - 1.14.18.1 0.0000001339 64.0
YYD1_k127_4910894_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 1.709e-207 658.0
YYD1_k127_4910894_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000008216 227.0
YYD1_k127_4910894_2 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000003225 102.0
YYD1_k127_4911796_0 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005166 382.0
YYD1_k127_4911796_1 NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 348.0
YYD1_k127_4911796_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001307 301.0
YYD1_k127_4911796_3 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000004464 201.0
YYD1_k127_4914464_0 Uncharacterized protein conserved in bacteria (DUF2344) - - - 3.982e-197 649.0
YYD1_k127_4914464_1 LVIVD repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002585 289.0
YYD1_k127_4914464_2 Rubrerythrin - - - 0.000000000000000000000000000000000000000000001328 188.0
YYD1_k127_4921102_0 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000002323 230.0
YYD1_k127_4921102_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000002492 57.0
YYD1_k127_4922753_0 Bacterial protein of unknown function (DUF885) - - - 1.921e-221 701.0
YYD1_k127_4922753_1 membrane transporter protein K07090 - - 0.0000000000000000000000000006521 121.0
YYD1_k127_4927930_0 SMART Integrin alpha beta-propellor repeat protein - - - 1.517e-207 697.0
YYD1_k127_4927930_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000003175 193.0
YYD1_k127_4927930_2 endonuclease activity K07451 - - 0.00000000000000006979 89.0
YYD1_k127_4927930_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000194 70.0
YYD1_k127_4927930_4 cellulose binding - - - 0.000002888 62.0
YYD1_k127_4928477_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1336.0
YYD1_k127_4928477_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000008424 231.0
YYD1_k127_4928477_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000001099 148.0
YYD1_k127_4930283_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 1.797e-314 1004.0
YYD1_k127_4930283_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 1.073e-200 641.0
YYD1_k127_4930283_2 Kinase/pyrophosphorylase K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000004246 223.0
YYD1_k127_4930283_3 endonuclease activity K07451 - - 0.000000276 54.0
YYD1_k127_4936447_0 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 367.0
YYD1_k127_4936447_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000762 299.0
YYD1_k127_4936447_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000002662 216.0
YYD1_k127_4936447_3 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.00000000000000047 85.0
YYD1_k127_4936447_4 Type IV pilus biogenesis stability protein PilW - - - 0.0000000000171 71.0
YYD1_k127_4936447_5 antisigma factor binding - - - 0.0000002551 59.0
YYD1_k127_4938316_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 540.0
YYD1_k127_4938316_1 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009534 476.0
YYD1_k127_4938316_2 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000002857 212.0
YYD1_k127_4948399_0 Aconitase family (aconitate hydratase) - - - 9.774e-214 677.0
YYD1_k127_4948399_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 3.343e-213 668.0
YYD1_k127_4966693_0 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000004494 258.0
YYD1_k127_4966693_1 oxidoreductase activity K00337,K03333,K04771,K07114 - 1.1.3.6,1.6.5.3,3.4.21.107 0.000000000000000000000000007695 127.0
YYD1_k127_4966693_2 extracellular matrix structural constituent - - - 0.0000000000007264 82.0
YYD1_k127_4966693_3 extracellular matrix structural constituent - - - 0.000000004298 69.0
YYD1_k127_4972379_0 Carbon-nitrogen hydrolase - - - 0.000000000000000000000000000000000000185 151.0
YYD1_k127_4972379_1 pyrroloquinoline quinone binding - - - 0.0006747 52.0
YYD1_k127_4983382_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 587.0
YYD1_k127_4983382_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 385.0
YYD1_k127_4983382_2 NADPH quinone K00344 - 1.6.5.5 0.0000001937 58.0
YYD1_k127_4983397_0 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 301.0
YYD1_k127_4983397_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000002892 216.0
YYD1_k127_4983397_2 Belongs to the Dps family K04047 - - 0.0000000000000000000000000000000000000000000000000000001005 199.0
YYD1_k127_4983397_3 protein conserved in bacteria - - - 0.0000000000000000000000000000000001753 151.0
YYD1_k127_4983397_5 nucleotidyltransferase activity - - - 0.000001412 59.0
YYD1_k127_5001260_0 Transglycosylase - - - 1.231e-288 916.0
YYD1_k127_5006281_0 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 509.0
YYD1_k127_5006281_1 Amino acid kinase family K00926 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 335.0
YYD1_k127_5009581_0 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 385.0
YYD1_k127_5009581_1 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 295.0
YYD1_k127_5009581_2 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.00000000000000000000000000003707 123.0
YYD1_k127_5011323_0 ABC transporter K02021,K06147,K06148,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008125 615.0
YYD1_k127_5011323_1 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000004746 235.0
YYD1_k127_5011323_2 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.00000000000000000000000000000001449 139.0
YYD1_k127_5016792_0 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01840,K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 462.0
YYD1_k127_5016792_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 397.0
YYD1_k127_5016792_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859,K07566 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24,2.7.7.87 0.00000000000000000000000000000008512 134.0
YYD1_k127_5016792_3 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0030312,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.000000000000135 72.0
YYD1_k127_5026167_0 mannose metabolic process K01191 - 3.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 637.0
YYD1_k127_5026167_1 Belongs to the binding-protein-dependent transport system permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 436.0
YYD1_k127_5026167_2 ATPases associated with a variety of cellular activities K10441 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000212 283.0
YYD1_k127_5039089_0 TonB-dependent receptor - - - 0.000000000000000000000000866 119.0
YYD1_k127_5041804_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 466.0
YYD1_k127_5041804_1 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003589 383.0
YYD1_k127_5041804_2 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000000000000000000000000000000000000000007505 192.0
YYD1_k127_50496_0 PFAM AMMECR1 domain protein K09141 - - 0.00000000000000000000000000000000000000000001438 168.0
YYD1_k127_50496_2 TonB-dependent receptor K02014 - - 0.0000000001124 74.0
YYD1_k127_5060220_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008055 469.0
YYD1_k127_5060220_1 phosphoserine phosphatase activity K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000001345 214.0
YYD1_k127_5066055_0 DHH family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001841 280.0
YYD1_k127_5066055_1 Polysaccharide biosynthesis C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000139 262.0
YYD1_k127_5066055_2 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001252 235.0
YYD1_k127_5066055_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000005464 218.0
YYD1_k127_5066055_4 Belongs to the Fur family K03711,K09825 - - 0.0000000000000000000000000007236 118.0
YYD1_k127_5066055_5 Cysteine-rich domain K00113 - 1.1.5.3 0.0000000000000000000002097 99.0
YYD1_k127_5066055_6 Four helix bundle sensory module for signal transduction K03406 - - 0.00008766 55.0
YYD1_k127_5082886_0 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000006477 166.0
YYD1_k127_5082886_1 cellulose binding - - - 0.0000000000000000000000000000000000004623 158.0
YYD1_k127_5083092_0 CHAD domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000002505 237.0
YYD1_k127_5083092_1 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000001472 224.0
YYD1_k127_5083092_2 phosphohistidine phosphatase, SixA K08296 - - 0.000000000000000000000000000000000004339 147.0
YYD1_k127_5083092_3 Histidine Phosphotransfer domain - - - 0.000001017 58.0
YYD1_k127_5094902_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004662 295.0
YYD1_k127_5094902_1 - - - - 0.0003925 52.0
YYD1_k127_5099676_0 FAD binding domain - - - 0.0000000000000000000000000000000000000000000004302 184.0
YYD1_k127_5099676_1 Peptidase family M48 - - - 0.00000000000000000000006196 115.0
YYD1_k127_5099676_2 synthase K16167 - - 0.00000003175 66.0
YYD1_k127_5112185_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 337.0
YYD1_k127_5112185_1 Cold-shock protein K03704 - - 0.00000000000003877 74.0
YYD1_k127_5193832_0 MreB/Mbl protein K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007745 446.0
YYD1_k127_5193832_1 Fibronectin type 3 domain - - - 0.00000000000103 78.0
YYD1_k127_5202410_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 568.0
YYD1_k127_5202410_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 481.0
YYD1_k127_5202410_2 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 418.0
YYD1_k127_5202410_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 413.0
YYD1_k127_5202410_4 Participates in initiation and elongation during chromosome replication - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984 409.0
YYD1_k127_5202410_5 Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001177 269.0
YYD1_k127_5202410_6 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.000000000000000000000000000000000000002693 150.0
YYD1_k127_5202410_7 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000003115 122.0
YYD1_k127_5202410_8 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.00000000000000000000000001048 117.0
YYD1_k127_5202410_9 - - - - 0.0000000001862 72.0
YYD1_k127_5205906_0 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 318.0
YYD1_k127_5205906_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 294.0
YYD1_k127_5205906_2 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000007141 242.0
YYD1_k127_5208506_0 smart pdz dhr glgf K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009089 408.0
YYD1_k127_5208506_1 mutator MutT protein K03574,K03575 - 3.6.1.55 0.00000000000000000000000001379 114.0
YYD1_k127_5214983_0 PFAM peptidase M6, immune inhibitor A - - - 0.000000000000000000000000000000000000000000000000000000000000000000635 244.0
YYD1_k127_5214983_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000001415 150.0
YYD1_k127_5214983_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.000000000000000000000000000196 132.0
YYD1_k127_5214983_3 PFAM Phosphoribosyl transferase domain - - - 0.000000000000003607 81.0
YYD1_k127_5232898_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007856 343.0
YYD1_k127_5232898_2 O-Antigen ligase K02847,K13009 - - 0.0001334 53.0
YYD1_k127_5241461_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.356e-266 835.0
YYD1_k127_5241461_1 translation release factor activity - - - 0.00000000000000000000001158 102.0
YYD1_k127_5241461_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000001795 92.0
YYD1_k127_5246539_0 Peptidase family M1 domain K01992 - - 0.0 1129.0
YYD1_k127_5246539_1 (ABC) transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 408.0
YYD1_k127_5246539_2 - - - - 0.0000000000002235 81.0
YYD1_k127_5258855_0 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 362.0
YYD1_k127_5258855_1 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000002819 205.0
YYD1_k127_5258855_2 LVIVD repeat - - - 0.000133 53.0
YYD1_k127_5258855_3 Endonuclease I K07004 - - 0.0004205 51.0
YYD1_k127_5262957_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1078.0
YYD1_k127_5262957_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 481.0
YYD1_k127_5265338_0 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 487.0
YYD1_k127_5265338_1 PFAM Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008263 274.0
YYD1_k127_5271250_0 extracellular matrix structural constituent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 596.0
YYD1_k127_5271250_1 metallocarboxypeptidase activity K05996 - 3.4.17.18 0.00000000000004364 88.0
YYD1_k127_5271250_2 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000002838 66.0
YYD1_k127_5271250_3 Belongs to the glycosyl hydrolase 30 family K15924 - 3.2.1.136 0.0000000008635 74.0
YYD1_k127_5271250_4 amine dehydrogenase activity - - - 0.000002462 59.0
YYD1_k127_5271250_5 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000007146 49.0
YYD1_k127_5293171_0 PFAM Cytochrome b b6 domain - - - 5.699e-200 643.0
YYD1_k127_5293171_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 562.0
YYD1_k127_5293171_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000005702 239.0
YYD1_k127_5293171_3 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.000000000000000000000000003296 125.0
YYD1_k127_529739_0 tryptophanase activity K01667 - 4.1.99.1 1.572e-200 634.0
YYD1_k127_529739_1 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000006089 261.0
YYD1_k127_529739_2 peptidyl-tyrosine sulfation - - - 0.000000000000000005172 94.0
YYD1_k127_531918_0 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000009758 243.0
YYD1_k127_531918_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000006542 228.0
YYD1_k127_531918_2 purine ribonucleoside salvage K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000008749 183.0
YYD1_k127_531918_3 MerR family transcriptional regulator - - - 0.00000000000000000004099 98.0
YYD1_k127_531918_4 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000939 73.0
YYD1_k127_531918_5 - - - - 0.00001821 46.0
YYD1_k127_531918_6 Helix-turn-helix domain - - - 0.0001924 49.0
YYD1_k127_5329554_0 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000007954 244.0
YYD1_k127_5329554_1 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000000000000366 148.0
YYD1_k127_5329554_2 Protein CutA, chloroplastic-like K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022607,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071840 - 0.000000000000000000259 92.0
YYD1_k127_5329554_3 Purple acid Phosphatase, N-terminal domain - - - 0.000000000005662 74.0
YYD1_k127_5332120_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000003693 111.0
YYD1_k127_5335017_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007105 381.0
YYD1_k127_5335017_1 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000000007253 163.0
YYD1_k127_5335017_2 ThiS family K03154 - - 0.0000000002227 61.0
YYD1_k127_5335017_3 - - - - 0.00004294 54.0
YYD1_k127_5342124_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 1.155e-204 647.0
YYD1_k127_5342124_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 387.0
YYD1_k127_5342124_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000002666 269.0
YYD1_k127_5342124_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000003362 199.0
YYD1_k127_5342124_4 Ribosomal protein L31 - - - 0.0000000000000000000000002906 106.0
YYD1_k127_5342124_5 pyrroloquinoline quinone binding K12349 - 3.5.1.23 0.000000000000001255 90.0
YYD1_k127_5398818_0 Elongation factor Tu domain 2 K03833 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 492.0
YYD1_k127_5398818_1 pyrroloquinoline quinone binding - - - 0.00000000000000008259 91.0
YYD1_k127_5398818_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000003583 51.0
YYD1_k127_5446464_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000007064 259.0
YYD1_k127_5446464_1 Nucleotidyl transferase K11528 - 2.7.7.23 0.000000000000000000000000000000000000000000000000000000000009976 225.0
YYD1_k127_5446464_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000001388 64.0
YYD1_k127_5446464_3 LytR cell envelope-related transcriptional attenuator - - - 0.00000004064 62.0
YYD1_k127_5446464_4 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 GO:0000287,GO:0003674,GO:0003824,GO:0003864,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0019752,GO:0032787,GO:0034641,GO:0040007,GO:0042364,GO:0042398,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:0072330,GO:1901564,GO:1901566,GO:1901576 2.1.2.11 0.00000006948 54.0
YYD1_k127_5464180_0 acyl-coa dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 430.0
YYD1_k127_5464180_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K03793 - 1.5.1.33 0.00000000000000000000000000000000000000000000000001413 188.0
YYD1_k127_5464180_2 NUDIX domain - - - 0.0000000001202 65.0
YYD1_k127_5487007_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.00000000000000000000000000000000000000000001759 176.0
YYD1_k127_5489003_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000006126 266.0
YYD1_k127_5489003_1 protein conserved in bacteria K09919 - - 0.00000000000000000000000000006441 123.0
YYD1_k127_5489003_2 Fic/DOC family - - - 0.0000006151 61.0
YYD1_k127_5504635_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723,K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 508.0
YYD1_k127_5504635_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000002699 122.0
YYD1_k127_5531369_0 LytB protein K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 422.0
YYD1_k127_5531369_1 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 316.0
YYD1_k127_5531369_2 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000007917 246.0
YYD1_k127_5548182_0 Protein of unknown function (DUF3419) K13622 - - 0.00000000000000000000000000000000000000000000000000000000000000000002829 250.0
YYD1_k127_5548182_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000849 212.0
YYD1_k127_5548182_3 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000001057 180.0
YYD1_k127_5548182_4 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.0000000000000000000317 96.0
YYD1_k127_5548182_5 phosphatidylcholine synthase K01004 - 2.7.8.24 0.0000000000001681 84.0
YYD1_k127_5548182_6 efflux transmembrane transporter activity - - - 0.0002236 54.0
YYD1_k127_5582616_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 370.0
YYD1_k127_5582616_1 3-demethylubiquinone-9 3-O-methyltransferase activity K15257 - - 0.00000000000000000000000000000000000000000000000000000000000000007093 236.0
YYD1_k127_5582616_2 DNA-templated transcription, initiation K02405 - - 0.00000000000000000000000000000000000000000000001143 177.0
YYD1_k127_5582616_3 Parallel beta-helix repeats - - - 0.00000000002355 76.0
YYD1_k127_5582616_4 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000002909 51.0
YYD1_k127_5583166_0 AcrB/AcrD/AcrF family K03296 - - 5.862e-314 994.0
YYD1_k127_5583166_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000244 173.0
YYD1_k127_5583166_2 Outer membrane efflux protein - - - 0.0000000002591 72.0
YYD1_k127_5584508_0 reverse transcriptase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 554.0
YYD1_k127_5584508_1 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 331.0
YYD1_k127_5584508_2 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000267 209.0
YYD1_k127_5584508_3 endonuclease activity K07451 - - 0.000000000000004097 80.0
YYD1_k127_5584508_4 Belongs to the Orn Lys Arg decarboxylase class-II family K00928,K12526 - 2.7.2.4,4.1.1.20 0.0000004075 55.0
YYD1_k127_5587819_0 N-acyl-L-amino acid amidohydrolase K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007583 303.0
YYD1_k127_5587819_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000007173 149.0
YYD1_k127_5601826_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 393.0
YYD1_k127_5601826_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 385.0
YYD1_k127_5601826_2 Phycocyanin alpha phycocyanobilin lyase-like protein - - - 0.0002117 51.0
YYD1_k127_5603643_0 Aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006723 520.0
YYD1_k127_5603643_1 Arginine K01478 - 3.5.3.6 0.000000000000000004816 87.0
YYD1_k127_5605777_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0 1201.0
YYD1_k127_5605777_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 5.492e-207 653.0
YYD1_k127_5605777_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008164 376.0
YYD1_k127_5605777_3 PFAM outer membrane efflux protein - - - 0.000000000002709 80.0
YYD1_k127_5607295_0 citrate synthase K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 397.0
YYD1_k127_5607295_1 Amp-dependent synthetase and ligase K00797,K01897 - 2.5.1.16,6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 366.0
YYD1_k127_5613605_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 332.0
YYD1_k127_5613605_2 Tetratricopeptide repeat - - - 0.0000008323 62.0
YYD1_k127_5628210_0 Peptidoglycan-synthase activator LpoB K07337 - - 0.000000000000000000000000000000000000000000000000000001312 199.0
YYD1_k127_5628210_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000009142 160.0
YYD1_k127_5628210_2 phosphoglycolate phosphatase activity - - - 0.00000000000000000000000000000009027 134.0
YYD1_k127_5649507_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 369.0
YYD1_k127_5649507_1 - - - - 0.0000005972 53.0
YYD1_k127_5649507_2 - - - - 0.00001566 52.0
YYD1_k127_5663389_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 375.0
YYD1_k127_5663389_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000962 175.0
YYD1_k127_5677961_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007378 277.0
YYD1_k127_5677961_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000006933 249.0
YYD1_k127_5677961_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000003721 214.0
YYD1_k127_5677961_3 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000002978 192.0
YYD1_k127_5677961_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000001273 59.0
YYD1_k127_5696843_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 456.0
YYD1_k127_5696843_1 ABC-type sugar transport system periplasmic component K02027 - - 0.000000002332 64.0
YYD1_k127_5738232_0 PFAM Ribonuclease BN-like family K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 288.0
YYD1_k127_5738232_1 - - - - 0.00000000000000002505 86.0
YYD1_k127_5738232_2 - - - - 0.000000000000001606 84.0
YYD1_k127_5738232_3 - - - - 0.000000000000003968 79.0
YYD1_k127_5761989_0 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 3.259e-290 914.0
YYD1_k127_5761989_1 PolyA polymerase K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005909 394.0
YYD1_k127_5761989_2 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.000000000000000000000000000000000000000000000000000000000009122 216.0
YYD1_k127_5761989_3 - - - - 0.00000000000000000004644 96.0
YYD1_k127_5761989_4 Belongs to the UPF0337 (CsbD) family - - - 0.00000006976 58.0
YYD1_k127_577206_0 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 441.0
YYD1_k127_577206_1 - - - - 0.0000000000000000000000001132 110.0
YYD1_k127_5777053_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007343 544.0
YYD1_k127_5777053_1 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 501.0
YYD1_k127_5777053_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 400.0
YYD1_k127_5777053_3 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008503 265.0
YYD1_k127_5777053_4 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000588 287.0
YYD1_k127_5777053_5 Catalyzes the dephosphorylation of D,L-glyceraldehyde 3- phosphate in vitro K07025 - - 0.00000000000000000000000000001733 126.0
YYD1_k127_5777053_6 - - - - 0.000000000000000000000001108 106.0
YYD1_k127_5777053_7 Tetratricopeptide repeat - - - 0.0009012 52.0
YYD1_k127_5784273_0 DNA topoisomerase II activity K02469 - 5.99.1.3 1.657e-313 981.0
YYD1_k127_5784273_1 Anticodon-binding domain of tRNA K01870 - 6.1.1.5 1.011e-234 741.0
YYD1_k127_5784273_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000003659 254.0
YYD1_k127_5784273_3 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.000000000000000000000000000000000000000000000000002694 188.0
YYD1_k127_5784273_4 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000002377 111.0
YYD1_k127_5797001_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 1.11e-249 786.0
YYD1_k127_5797001_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016625,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0047553,GO:0055114,GO:0071704,GO:0071944,GO:0072350 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 449.0
YYD1_k127_5797001_2 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00059 - 1.1.1.100 0.000000000000000000000000006429 120.0
YYD1_k127_5797001_3 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00004461 53.0
YYD1_k127_5804692_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 497.0
YYD1_k127_5804692_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002489 284.0
YYD1_k127_5804692_2 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.00000002264 59.0
YYD1_k127_5808635_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 333.0
YYD1_k127_5808635_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009389 329.0
YYD1_k127_5808635_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000004056 224.0
YYD1_k127_5808635_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000003944 178.0
YYD1_k127_5808635_4 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000003038 187.0
YYD1_k127_5808635_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000007128 106.0
YYD1_k127_5809382_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 462.0
YYD1_k127_5809382_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000003874 185.0
YYD1_k127_5809382_2 - - - - 0.0000000000000000000000002987 106.0
YYD1_k127_5811268_0 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 435.0
YYD1_k127_5811268_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000303 184.0
YYD1_k127_5811268_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000007776 172.0
YYD1_k127_5811268_3 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000000004342 153.0
YYD1_k127_5811268_4 extracellular matrix structural constituent - - - 0.000009414 53.0
YYD1_k127_5814374_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 491.0
YYD1_k127_5814374_1 Participates in both transcription termination and antitermination K02600 GO:0001000,GO:0001121,GO:0001125,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008491 375.0
YYD1_k127_5814374_2 Peptidase M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006955 238.0
YYD1_k127_5814374_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000004524 103.0
YYD1_k127_5817320_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005545 289.0
YYD1_k127_5817320_1 - - - - 0.00000000000000000000000000000000000000000000000000000000004129 215.0
YYD1_k127_5817320_2 - - - - 0.000000000000000000000000000000000000003985 153.0
YYD1_k127_5817320_4 Belongs to the peptidase M16 family K07263 - - 0.00000000000001899 87.0
YYD1_k127_5817320_5 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000008787 83.0
YYD1_k127_5827871_0 Belongs to the CarB family K01955 - 6.3.5.5 6.413e-216 688.0
YYD1_k127_5836957_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009068 392.0
YYD1_k127_5836957_1 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 392.0
YYD1_k127_5836957_2 Aminotransferase class I and II K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 375.0
YYD1_k127_5836957_3 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 328.0
YYD1_k127_5836957_4 Peptidase dimerisation domain K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000003755 261.0
YYD1_k127_5836957_5 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000001915 235.0
YYD1_k127_5836957_6 - - - - 0.00000000000000000000000000000000000000334 165.0
YYD1_k127_5836957_7 metallocarboxypeptidase activity K14054 - - 0.000000000000000000000000000000004141 145.0
YYD1_k127_5836957_8 Evidence 5 No homology to any previously reported sequences - - - 0.000000000141 71.0
YYD1_k127_5839334_0 (ABC) transporter K06147,K06148,K11085,K16787,K18104,K18889 - 3.6.3.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 417.0
YYD1_k127_5839334_1 PFAM ABC transporter transmembrane region K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 405.0
YYD1_k127_5839334_2 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000005759 134.0
YYD1_k127_5839334_3 Putative adhesin - - - 0.000000001099 69.0
YYD1_k127_5851281_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 465.0
YYD1_k127_5851281_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005984 306.0
YYD1_k127_5851281_2 PFAM glutamine amidotransferase class-I K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000001147 252.0
YYD1_k127_5851281_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000007916 204.0
YYD1_k127_5851281_4 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000002098 171.0
YYD1_k127_5866782_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 469.0
YYD1_k127_5866782_1 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 341.0
YYD1_k127_5866782_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000001691 193.0
YYD1_k127_5866782_3 - - - - 0.000000000000000002955 85.0
YYD1_k127_5866782_4 TIGRFAM HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 - 3.1.3.3 0.000000004753 60.0
YYD1_k127_5894711_0 Oxidoreductase NAD-binding domain K15765 - 1.18.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 317.0
YYD1_k127_5894711_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002954 272.0
YYD1_k127_5894711_2 Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase K01910 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008771,GO:0009987,GO:0016874,GO:0016877,GO:0016878,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 6.2.1.22 0.0000000000000000000000000000001239 128.0
YYD1_k127_5894711_3 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000002184 125.0
YYD1_k127_598291_0 Domains REC, sigma54 interaction, HTH8 - - - 0.000000000000000000000000000000000000000000000000000000000000000002066 238.0
YYD1_k127_598291_1 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000003563 203.0
YYD1_k127_599284_0 PFAM carboxyl transferase K01615 - 4.1.1.70 1.642e-253 793.0
YYD1_k127_599284_1 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 512.0
YYD1_k127_599284_2 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004304 340.0
YYD1_k127_599284_3 Protein of unknown function (DUF3179) - - - 0.000000000000000000000000000000000000000000000009302 188.0
YYD1_k127_599284_4 CoA binding domain K06929 - - 0.00000000000000000000000000000000000000001708 158.0
YYD1_k127_599284_5 ligase activity, forming carbon-carbon bonds K00627,K00645,K01572,K02160 - 2.3.1.12,2.3.1.39,4.1.1.3 0.000000000000000002798 92.0
YYD1_k127_599284_6 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.000000007251 67.0
YYD1_k127_605115_0 Cytochrome b subunit of formate dehydrogenase-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007295 571.0
YYD1_k127_605115_1 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 507.0
YYD1_k127_605115_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006615 448.0
YYD1_k127_605115_3 denitrification pathway - GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0019645,GO:0022900,GO:0022904,GO:0044237,GO:0045333,GO:0055114 - 0.000000000000000000000000000000000000000000000000004026 194.0
YYD1_k127_605115_4 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.0000000000000000000000000000000000000000000000005986 194.0
YYD1_k127_605115_5 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000002968 175.0
YYD1_k127_605115_6 amine dehydrogenase activity K21449 - - 0.00000000000000000000000172 110.0
YYD1_k127_605115_8 CAAX protease self-immunity K07052 - - 0.0000053 58.0
YYD1_k127_606522_0 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000005285 168.0
YYD1_k127_606522_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000003571 141.0
YYD1_k127_606522_2 Glycosyl transferases group 1 - - - 0.0000000002044 71.0
YYD1_k127_6065854_0 Abc transporter K09817 - - 0.00000000000000000000000000000000000000000008755 176.0
YYD1_k127_6065854_1 ABC-type Mn2 Zn2 transport systems permease components K09816 - - 0.0000000000000000000000000000000000000000001094 173.0
YYD1_k127_6065854_2 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.000000000000000005439 92.0
YYD1_k127_6065854_3 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000005993 87.0
YYD1_k127_6066978_0 TIGRFAM molybdenum cofactor synthesis K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000001797 230.0
YYD1_k127_6066978_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000003352 187.0
YYD1_k127_6066978_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000004828 159.0
YYD1_k127_6066978_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000009449 96.0
YYD1_k127_6066978_4 PFAM Protein kinase domain - - - 0.000000000001683 76.0
YYD1_k127_6072329_0 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008009 536.0
YYD1_k127_6072329_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 514.0
YYD1_k127_6072329_2 Permease YjgP YjgQ family protein K07091,K11720 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001197 295.0
YYD1_k127_6072329_3 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001501 262.0
YYD1_k127_6072329_4 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000006628 184.0
YYD1_k127_6075209_0 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000009774 198.0
YYD1_k127_6075209_1 4-amino-4-deoxy-L-arabinose transferase activity K02277 - 1.9.3.1 0.00000000000000000000000000008034 131.0
YYD1_k127_6075209_2 Dodecin K09165 - - 0.00000000000000001249 85.0
YYD1_k127_6075209_3 Tetratricopeptide repeat - - - 0.00002406 58.0
YYD1_k127_6077390_0 NAD(P) transhydrogenase beta subunit K00325 - 1.6.1.2 7.902e-203 640.0
YYD1_k127_6077390_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005673 465.0
YYD1_k127_6077390_2 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 440.0
YYD1_k127_6077390_3 Redoxin - - - 0.000000000000000000000000000000000000002067 160.0
YYD1_k127_6077390_4 Disulphide bond corrector protein DsbC K04084 - 1.8.1.8 0.0000000000000000000000000000000000000199 156.0
YYD1_k127_6077390_5 NADP transhydrogenase K00324 - 1.6.1.2 0.0000000000000000000000002267 120.0
YYD1_k127_6094774_0 class II (D K and N) K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901 547.0
YYD1_k127_6107633_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 5.652e-228 715.0
YYD1_k127_6107633_1 glutamate-tRNA ligase activity K01885,K09698 - 6.1.1.17,6.1.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 540.0
YYD1_k127_6126233_0 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 332.0
YYD1_k127_6126233_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000825 272.0
YYD1_k127_6126233_2 LVIVD repeat - - - 0.00000000000000000001508 98.0
YYD1_k127_6127113_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007797 559.0
YYD1_k127_6127113_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 385.0
YYD1_k127_6127113_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000005611 111.0
YYD1_k127_6127113_11 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000001635 115.0
YYD1_k127_6127113_12 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000001759 98.0
YYD1_k127_6127113_13 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.00000000000006467 72.0
YYD1_k127_6127113_14 Diguanylate cyclase - - - 0.0001528 51.0
YYD1_k127_6127113_15 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0001924 52.0
YYD1_k127_6127113_16 Putative zinc-finger - - - 0.000394 51.0
YYD1_k127_6127113_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 385.0
YYD1_k127_6127113_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 316.0
YYD1_k127_6127113_4 malonyl CoA-acyl carrier protein transacylase K00645,K15327,K15329,K15355,K15469 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003334 286.0
YYD1_k127_6127113_5 KR domain K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005109 277.0
YYD1_k127_6127113_6 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000002732 205.0
YYD1_k127_6127113_7 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000001806 156.0
YYD1_k127_6127113_8 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000102 152.0
YYD1_k127_6127113_9 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000007258 158.0
YYD1_k127_6132770_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 4.892e-267 833.0
YYD1_k127_6132770_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005747 359.0
YYD1_k127_6132770_2 Aldo/keto reductase family - - - 0.0000000001443 63.0
YYD1_k127_6154693_0 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003963 253.0
YYD1_k127_6154693_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000001289 232.0
YYD1_k127_6154693_2 COG2059 Chromate transport protein ChrA K07240 - - 0.000000000000000000000000000000000001905 145.0
YYD1_k127_6154693_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000001488 150.0
YYD1_k127_6154693_4 transport system involved in gliding motility auxiliary component-like K01992 - - 0.0000009915 61.0
YYD1_k127_6171768_0 Tricorn protease homolog K08676 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 558.0
YYD1_k127_6172271_0 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000006881 219.0
YYD1_k127_6172271_1 Glycosyl transferase 4-like domain - - - 0.00000000000000001061 98.0
YYD1_k127_6180456_0 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 324.0
YYD1_k127_6183743_0 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 347.0
YYD1_k127_6183743_1 TOBE domain K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000001021 249.0
YYD1_k127_6183743_2 Bacterial extracellular solute-binding protein K02020 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0042597,GO:0043167,GO:0043168,GO:0044464 - 0.0000000000000000000000000000000001437 142.0
YYD1_k127_6183743_3 Binding-protein-dependent transport system inner membrane component K02018 - - 0.0000000000000000000000000000000001801 135.0
YYD1_k127_6183743_4 TIGRFAM molybdate ABC transporter, inner membrane subunit K02018 - - 0.00000000000003237 80.0
YYD1_k127_6183743_5 extracellular matrix structural constituent - - - 0.000001209 61.0
YYD1_k127_6194687_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000001003 183.0
YYD1_k127_6194687_1 MacB-like periplasmic core domain K02004 - - 0.000000000000008248 75.0
YYD1_k127_6194687_2 amino acid activation for nonribosomal peptide biosynthetic process K17713 - - 0.00000001079 69.0
YYD1_k127_6194687_3 metallopeptidase activity K01218,K13276 - 3.2.1.78 0.00001861 58.0
YYD1_k127_6194687_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0004566 43.0
YYD1_k127_6230800_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004551 508.0
YYD1_k127_6230800_1 Peptidase family M54 K06974 - - 0.0000000000000000000000000000000000005834 158.0
YYD1_k127_6230800_2 Histidine kinase K02668,K07710 - 2.7.13.3 0.00000000000000000000003536 100.0
YYD1_k127_6238455_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004143 376.0
YYD1_k127_6238455_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 336.0
YYD1_k127_6238455_2 PFAM ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001118 294.0
YYD1_k127_6238455_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002887 275.0
YYD1_k127_629186_0 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006778 325.0
YYD1_k127_629186_1 COG1020 Non-ribosomal peptide synthetase modules and related proteins - - - 0.000000000006591 76.0
YYD1_k127_629186_2 TonB-dependent receptor K01179 - 3.2.1.4 0.00002369 57.0
YYD1_k127_629186_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0005965 51.0
YYD1_k127_6311058_0 Histidine kinase K07709 - 2.7.13.3 0.000000000000000000000000000000002526 147.0
YYD1_k127_6311058_1 protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.0000000000000000000000001567 119.0
YYD1_k127_6311058_2 Pfam:DUF59 K02612 - - 0.00000001929 56.0
YYD1_k127_6314318_0 PFAM ATP-binding region, ATPase domain protein K07636,K07652 - 2.7.13.3 0.00000000000000000000000000000000008281 149.0
YYD1_k127_6314318_1 LVIVD repeat - - - 0.000000000000000000000001834 114.0
YYD1_k127_6314318_2 tRNA (guanine-N2-)-methyltransferase activity - - - 0.00000000000000000000000841 115.0
YYD1_k127_6314318_3 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000007498 93.0
YYD1_k127_631458_0 uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000003257 240.0
YYD1_k127_631458_1 TIGRFAM hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000002435 209.0
YYD1_k127_631458_10 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03635,K21142 - 2.8.1.12 0.00000000004353 69.0
YYD1_k127_631458_11 S4 RNA-binding domain - GO:0008150,GO:0040007 - 0.0000000002624 66.0
YYD1_k127_631458_12 pfkB family carbohydrate kinase - - - 0.0000005486 57.0
YYD1_k127_631458_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000002275 199.0
YYD1_k127_631458_3 Phosphonate ABC transporter ATP-binding protein K09812 - - 0.0000000000000000000000000000000000000000000000004426 186.0
YYD1_k127_631458_4 PSP1 C-terminal conserved region - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000004089 172.0
YYD1_k127_631458_5 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000003599 174.0
YYD1_k127_631458_6 Peptidase M23 K21471 - - 0.0000000000000000000000000000000000000001066 166.0
YYD1_k127_631458_7 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000004708 154.0
YYD1_k127_631458_8 MoaE protein K03635 - 2.8.1.12 0.0000000000000000000000000004501 117.0
YYD1_k127_631458_9 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.00000000000000000002393 104.0
YYD1_k127_634295_0 unfolded protein binding K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0018995,GO:0019219,GO:0019222,GO:0020003,GO:0022607,GO:0030430,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043531,GO:0043656,GO:0043657,GO:0043933,GO:0044085,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0065010,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 2.47e-294 916.0
YYD1_k127_634295_1 PFAM Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000006485 159.0
YYD1_k127_6352556_0 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000001605 208.0
YYD1_k127_6352556_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000001125 208.0
YYD1_k127_6352556_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000005737 200.0
YYD1_k127_6352556_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000002439 146.0
YYD1_k127_6352556_4 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.000000000000000000000004086 109.0
YYD1_k127_6352556_5 ADP-ribosylation factor family K06883 - - 0.000000000000000004642 96.0
YYD1_k127_6352556_6 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.000000000000001376 81.0
YYD1_k127_6357542_0 Thioredoxin-like K06196 - - 0.0000000000000000000000000000002749 130.0
YYD1_k127_6376315_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 338.0
YYD1_k127_6376315_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000001995 227.0
YYD1_k127_6376315_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000006104 217.0
YYD1_k127_6376315_3 - - - - 0.0000000000000000000000000000000000000000000000001327 185.0
YYD1_k127_6376315_4 COG0515 Serine threonine protein kinase - - - 0.000000005386 68.0
YYD1_k127_6379300_0 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006548 471.0
YYD1_k127_6379300_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 452.0
YYD1_k127_6379300_2 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000003481 194.0
YYD1_k127_6379300_3 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000003286 95.0
YYD1_k127_6379300_4 Parallel beta-helix repeats - - - 0.00000005192 65.0
YYD1_k127_6379300_5 Major Facilitator Superfamily - - - 0.0005888 47.0
YYD1_k127_6380501_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 580.0
YYD1_k127_6380501_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000049,GO:0000154,GO:0001510,GO:0002935,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016426,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0070040,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:0140102,GO:1901360,GO:1901363 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000001109 274.0
YYD1_k127_6380501_2 response regulator K02481,K07715 - - 0.000000000000000000000000000000000000000000000000000001438 218.0
YYD1_k127_6380501_3 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000001284 136.0
YYD1_k127_6380501_4 Polymer-forming cytoskeletal - - - 0.0000000001876 73.0
YYD1_k127_6380501_5 cellulose binding K00505 - 1.14.18.1 0.000005551 58.0
YYD1_k127_6380501_6 Putative zinc-finger - - - 0.0004867 52.0
YYD1_k127_6388351_0 Malic enzyme, NAD binding domain K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 2.476e-265 833.0
YYD1_k127_6388351_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004619 323.0
YYD1_k127_6388351_2 Prephenate dehydrogenase K00210 - 1.3.1.12 0.000000000000000000000000000000000000000000000001875 197.0
YYD1_k127_6388351_3 pfam abc K01990 - - 0.000000000000000245 82.0
YYD1_k127_6393918_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 5.779e-302 953.0
YYD1_k127_6393918_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 334.0
YYD1_k127_6393918_2 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001553 279.0
YYD1_k127_6393918_3 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000000000000000005819 215.0
YYD1_k127_6393918_4 PAS domain - - - 0.0000000000000000000000000000012 125.0
YYD1_k127_6393918_5 translation initiation factor activity - - - 0.0000000000000000000000195 115.0
YYD1_k127_6398170_0 Glycosyltransferase like family 2 K03606,K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 344.0
YYD1_k127_6398170_1 transferase activity, transferring glycosyl groups K00721,K03820 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 310.0
YYD1_k127_6398170_2 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.0000000000000000000000000000000000000001375 153.0
YYD1_k127_6398170_3 Two component regulator propeller - - - 0.0000001316 65.0
YYD1_k127_6405825_0 AAA domain - - - 0.00000000001137 76.0
YYD1_k127_6405825_1 domain, Protein - - - 0.0003638 46.0
YYD1_k127_6405825_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0005392 52.0
YYD1_k127_6405914_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 445.0
YYD1_k127_6405914_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 381.0
YYD1_k127_6405914_2 OsmC-like protein K04063 - - 0.000000000000000000000000000000000000000000000000000000127 200.0
YYD1_k127_6405914_3 Histidine Phosphotransfer domain - - - 0.000000000000000000000000007299 116.0
YYD1_k127_6412923_0 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 414.0
YYD1_k127_6412923_1 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000007336 177.0
YYD1_k127_6412923_2 lactoylglutathione lyase activity - - - 0.000000000000000000000000000000000000000959 150.0
YYD1_k127_6412923_3 TIGRFAM export-related chaperone CsaA K06878 - - 0.00000000000000000000000000000001048 130.0
YYD1_k127_6412923_4 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.000000000000000000000000000002774 130.0
YYD1_k127_6412923_5 ABC transporter K02049 - - 0.0000000000003322 77.0
YYD1_k127_6433838_0 radical SAM domain protein K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 442.0
YYD1_k127_6433838_1 pfam nudix - - - 0.000000000000000000000000000000000000000000000000001247 190.0
YYD1_k127_6433838_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000004381 202.0
YYD1_k127_6433838_3 - - - - 0.000000000000000000000000001261 115.0
YYD1_k127_6433838_4 nucleotide catabolic process K05996 - 3.4.17.18 0.000000000001688 70.0
YYD1_k127_6441616_0 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K00087 - 1.17.1.4 6.628e-204 651.0
YYD1_k127_6441616_1 transcriptional regulator - - - 0.00000000003953 72.0
YYD1_k127_644890_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K13599 - - 0.00000000000000000000000000000000000000000000000001169 187.0
YYD1_k127_644890_1 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000008939 178.0
YYD1_k127_644890_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000004354 168.0
YYD1_k127_6455646_0 CHAT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001582 296.0
YYD1_k127_6455646_1 Glycosyltransferase family 28 C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003056 270.0
YYD1_k127_6455646_2 Belongs to the peptidase S8 family K08651,K14743 - 3.4.21.66 0.00000000000000000000000000000000000000000000000000000008753 212.0
YYD1_k127_6455646_3 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000007976 114.0
YYD1_k127_6455646_4 COG1520 FOG WD40-like repeat - - - 0.0000000000000658 81.0
YYD1_k127_6459794_0 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000481 197.0
YYD1_k127_6459794_1 Polysaccharide export protein K01991,K20988 - - 0.000000000000000000000000003155 124.0
YYD1_k127_6459794_2 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000003137 67.0
YYD1_k127_6459794_3 TIGRFAM polysaccharide chain length determinant protein, PEP-CTERM locus subfamily - - - 0.000003731 56.0
YYD1_k127_6472236_0 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 317.0
YYD1_k127_6472236_1 Tetratricopeptide repeat - - - 0.00000000002478 74.0
YYD1_k127_6479964_0 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 299.0
YYD1_k127_6479964_1 - K01992 - - 0.00000000000000000000000000000000000000000000000000001258 194.0
YYD1_k127_6479964_2 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000001348 191.0
YYD1_k127_6479964_3 Domain of unknown function (DUF4340) - - - 0.0000000002721 72.0
YYD1_k127_6508407_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 578.0
YYD1_k127_6508407_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 527.0
YYD1_k127_6541434_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 2.335e-216 682.0
YYD1_k127_6541434_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000009423 218.0
YYD1_k127_6541434_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000001208 194.0
YYD1_k127_6541434_3 endoribonuclease K09022 - 3.5.99.10 0.000000000000000000000000000000004459 133.0
YYD1_k127_6541434_4 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.000000000000000000000000003787 112.0
YYD1_k127_6541434_5 protein secretion K09800 - - 0.00000000000008596 78.0
YYD1_k127_6541434_6 - - - - 0.000000001076 69.0
YYD1_k127_655621_0 glycosyl hydrolase, BNR repeat-containing protein - - - 0.000000000000001557 87.0
YYD1_k127_655621_1 Evidence 5 No homology to any previously reported sequences - - - 0.000000006051 66.0
YYD1_k127_655621_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000005751 65.0
YYD1_k127_655621_3 Tetratricopeptide repeat - - - 0.00000005751 65.0
YYD1_k127_655621_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K05996,K06987,K07752 - 3.4.17.18,3.4.17.22 0.00007518 53.0
YYD1_k127_655621_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0001251 53.0
YYD1_k127_6558844_0 Alkaline phosphatase - - - 0.0000000000000000003909 102.0
YYD1_k127_6558844_1 - - - - 0.00000000002057 75.0
YYD1_k127_6558844_2 cellulose binding - - - 0.00000005365 56.0
YYD1_k127_657687_0 amine dehydrogenase activity - - - 2.698e-244 793.0
YYD1_k127_657687_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 436.0
YYD1_k127_657687_2 ECF sigma factor K03088 - - 0.000000000000000000000000000002142 128.0
YYD1_k127_657687_3 sigma factor antagonist activity K04757,K07315,K17752 - 2.7.11.1,3.1.3.3 0.000000000004607 72.0
YYD1_k127_657687_5 STAS domain K04749 - - 0.00001538 57.0
YYD1_k127_6577530_0 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 511.0
YYD1_k127_6577530_1 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process K03361,K22071 GO:0000003,GO:0000151,GO:0000746,GO:0000747,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030674,GO:0031145,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0044764,GO:0050789,GO:0050794,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234 - 0.000000000000000000000000000000000004582 149.0
YYD1_k127_6577530_2 Gram-negative-bacterium-type cell outer membrane assembly - - - 0.0000000000000000000002614 100.0
YYD1_k127_6577530_3 PFAM Activator of Hsp90 ATPase 1 family protein - - - 0.000003676 59.0
YYD1_k127_660327_0 Peptidylprolyl isomerase K01802,K03769,K03770 - 5.2.1.8 0.00000000000000000000000000000000001171 152.0
YYD1_k127_660327_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000008728 112.0
YYD1_k127_660327_2 Polysaccharide biosynthesis protein - - - 0.000000000000000000000009032 115.0
YYD1_k127_660327_3 Protein involved in cellulose biosynthesis - - - 0.000000000000000000008284 108.0
YYD1_k127_660327_4 outer membrane efflux protein - - - 0.00000000000005388 80.0
YYD1_k127_6648274_0 PFAM ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 586.0
YYD1_k127_6648274_1 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 395.0
YYD1_k127_6648274_2 Protein of unknown function (DUF3798) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 364.0
YYD1_k127_6648274_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 342.0
YYD1_k127_6648274_4 Integral membrane protein TerC family K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 330.0
YYD1_k127_6648274_5 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000002682 281.0
YYD1_k127_6652973_0 mannose-ethanolamine phosphotransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000004455 243.0
YYD1_k127_6652973_1 SMART AAA ATPase K02450 - - 0.000000000000000000000000000000000000000000000000000000000000002837 227.0
YYD1_k127_6652973_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000002577 185.0
YYD1_k127_6652973_3 AAA domain K16554 - - 0.00000000000000000008222 98.0
YYD1_k127_6652973_4 Chain length determinant protein K16692 - - 0.0000000000000001387 92.0
YYD1_k127_665520_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003943 271.0
YYD1_k127_665520_1 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.000000000000000000000000000000000000001308 169.0
YYD1_k127_665520_2 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000005833 127.0
YYD1_k127_665520_3 transferase activity, transferring glycosyl groups K00786 - - 0.000000000000000000000000002507 128.0
YYD1_k127_665520_4 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000006474 93.0
YYD1_k127_6659601_0 histidine kinase A domain protein - - - 0.0000000000000000000000000003468 132.0
YYD1_k127_6659601_1 Diguanylate cyclase - - - 0.000000000000000000000000674 121.0
YYD1_k127_667130_0 Ribosomal protein S1 K02945,K03527,K12132 GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010 1.17.7.4,2.7.11.1 1.653e-211 672.0
YYD1_k127_667130_1 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000001175 135.0
YYD1_k127_667130_2 AAA ATPase domain - - - 0.000002423 54.0
YYD1_k127_6672964_0 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 0.00000000000000000000000000000000000000000000000000889 188.0
YYD1_k127_6672964_1 NmrA-like family K00091 - 1.1.1.219 0.00000000000000000000000000000000005081 151.0
YYD1_k127_6674769_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 427.0
YYD1_k127_6674769_1 Mandelate racemase muconate lactonizing enzyme K19802 - 5.1.1.20 0.0000000000000000000001006 99.0
YYD1_k127_6674769_2 4Fe-4S dicluster domain K11473 - - 0.0000000000000000003138 100.0
YYD1_k127_6674769_3 PFAM FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 0.0000000000000001364 94.0
YYD1_k127_6680161_0 Mismatch repair ATPase (MutS family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 406.0
YYD1_k127_6680161_1 PFAM Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005237 266.0
YYD1_k127_6680161_2 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00003217 57.0
YYD1_k127_6703108_0 peptidase activity, acting on L-amino acid peptides K01337,K05994,K20276 - 3.4.11.10,3.4.21.50 0.00000000000000000000000000000000000000003897 175.0
YYD1_k127_6703108_1 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000000000000000000000000000000000003062 146.0
YYD1_k127_6703108_2 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000007517 107.0
YYD1_k127_6703108_3 Subtilase family - - - 0.000000000004023 80.0
YYD1_k127_6703108_4 pfkB family carbohydrate kinase - - - 0.00000000004688 73.0
YYD1_k127_6720981_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 332.0
YYD1_k127_6720981_1 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.0000000000000028 87.0
YYD1_k127_6729119_0 PFAM Aminotransferase, class I K10907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 325.0
YYD1_k127_6729119_1 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002157 247.0
YYD1_k127_6729119_2 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000003602 169.0
YYD1_k127_6736010_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 1.262e-240 764.0
YYD1_k127_6736010_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.15 0.00000000000000000000000000000004141 129.0
YYD1_k127_6736010_2 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000109 51.0
YYD1_k127_6768773_0 Evidence 5 No homology to any previously reported sequences K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000215 284.0
YYD1_k127_6768773_1 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000008006 210.0
YYD1_k127_6768773_2 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000008727 174.0
YYD1_k127_6768773_3 - - - - 0.000001383 59.0
YYD1_k127_6776771_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000001355 222.0
YYD1_k127_6776771_1 helicase involved in DNA repair and perhaps also replication K02342,K03722 - 2.7.7.7,3.6.4.12 0.00000000000000000000000000000000000000000000000000002097 210.0
YYD1_k127_6776771_2 Uncharacterized conserved protein (DUF2304) K09153 - - 0.0000002825 59.0
YYD1_k127_6776771_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.00009277 45.0
YYD1_k127_6787564_0 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000005914 237.0
YYD1_k127_6787564_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000009992 221.0
YYD1_k127_6787564_2 - - - - 0.00000000000000000000001118 107.0
YYD1_k127_6804043_0 PFAM Xanthine uracil vitamin C permease K06901 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005815 399.0
YYD1_k127_6804043_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009086 326.0
YYD1_k127_6804043_2 pseudouridine synthase activity - - - 0.0000000000002522 73.0
YYD1_k127_6809448_0 Sterol carrier protein domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002709 304.0
YYD1_k127_6809448_1 extracellular matrix structural constituent - - - 0.00000000000000003644 96.0
YYD1_k127_6809448_2 - - - - 0.00005265 51.0
YYD1_k127_6840772_0 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 584.0
YYD1_k127_6840772_1 ABC transporter substrate-binding protein K02027 - - 0.0000000000000000000000000000000000000006553 158.0
YYD1_k127_684493_0 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000224 183.0
YYD1_k127_684493_1 Esterase-like activity of phytase - - - 0.00000000000005592 83.0
YYD1_k127_684493_2 Sigma-54 interaction domain K19641 - - 0.0000004949 53.0
YYD1_k127_6864795_0 ABC transporter K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009074 562.0
YYD1_k127_6864795_1 ABC transporter transmembrane region K18889 - - 0.00000000000000000000000000000000000000000000000000000000000005093 219.0
YYD1_k127_6864795_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009378,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360 3.6.4.12 0.00000000000000000001116 96.0
YYD1_k127_686582_0 PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001437 250.0
YYD1_k127_686582_1 Acetyltransferase (GNAT) family - - - 0.00004585 53.0
YYD1_k127_70881_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005627 312.0
YYD1_k127_70881_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000003095 242.0
YYD1_k127_70881_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000000000000000000000000000123 152.0
YYD1_k127_70881_3 biopolymer transport protein K03559 - - 0.00000000000000000000000000001539 123.0
YYD1_k127_70881_4 biopolymer transport protein - - - 0.0000000000000000000000000001668 119.0
YYD1_k127_70881_5 PEP-CTERM system TPR-repeat lipoprotein - - - 0.0000000000000000001224 104.0
YYD1_k127_70881_6 STAS domain - - - 0.000000000000000001413 90.0
YYD1_k127_728608_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 4.079e-232 727.0
YYD1_k127_728608_1 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000436 265.0
YYD1_k127_728608_2 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000004178 202.0
YYD1_k127_728608_3 cytochrome c nitrite reductase K15876 - - 0.000000000000000000000000000000000000000000000000000007244 196.0
YYD1_k127_734931_0 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007438 346.0
YYD1_k127_734931_1 Acetyl-CoA hydrolase/transferase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004 267.0
YYD1_k127_736125_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 293.0
YYD1_k127_736125_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000006324 263.0
YYD1_k127_736125_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000000000000000000000002717 115.0
YYD1_k127_736125_3 Sporulation and spore germination - - - 0.00000001408 61.0
YYD1_k127_77813_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 426.0
YYD1_k127_77813_1 COGs COG1392 Phosphate transport regulator (distant homolog of PhoU) K07220 - - 0.0000000000000000000000000000000000000000000000000007147 190.0
YYD1_k127_77813_2 PFAM glycosyl transferase family 39 - - - 0.00003116 56.0
YYD1_k127_80583_0 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000295 128.0
YYD1_k127_80583_1 metallopeptidase activity K01176 - 3.2.1.1 0.000000000000002935 87.0
YYD1_k127_854411_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 445.0
YYD1_k127_854411_1 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003611 372.0
YYD1_k127_854411_2 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 367.0
YYD1_k127_854411_3 Branched-chain amino acid ATP-binding cassette transporter - - - 0.00000000000000006872 93.0
YYD1_k127_871354_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 7.402e-218 688.0
YYD1_k127_871354_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233 319.0
YYD1_k127_871354_2 Deoxynucleoside kinase K15518 - 2.7.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000007469 254.0
YYD1_k127_871354_3 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000001953 221.0
YYD1_k127_871354_4 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000001489 153.0
YYD1_k127_871354_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000006268 117.0
YYD1_k127_871354_6 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000001009 80.0
YYD1_k127_871354_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00003034 49.0
YYD1_k127_874304_0 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 343.0
YYD1_k127_874304_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006294 291.0
YYD1_k127_874304_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000443 267.0
YYD1_k127_874304_3 Carbon-nitrogen hydrolase K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000005436 250.0
YYD1_k127_874304_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000002248 199.0
YYD1_k127_874304_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000001854 160.0
YYD1_k127_874304_6 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000001412 147.0
YYD1_k127_874304_7 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000009366 152.0
YYD1_k127_874304_8 polysaccharide catabolic process K01179,K01218 - 3.2.1.4,3.2.1.78 0.00000000001645 75.0
YYD1_k127_874304_9 Binds directly to 16S ribosomal RNA K02968 - - 0.0000001104 57.0
YYD1_k127_875217_0 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 307.0
YYD1_k127_875217_1 extracellular matrix structural constituent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002771 309.0
YYD1_k127_875217_2 NmrA-like family K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000003109 254.0
YYD1_k127_875217_3 Peptidase M14, carboxypeptidase A K05996 - 3.4.17.18 0.00000000002806 78.0
YYD1_k127_875217_4 cellulose binding - - - 0.00000001213 69.0
YYD1_k127_875217_5 Subtilase family - - - 0.000001319 62.0
YYD1_k127_875229_0 Cytochrome C assembly protein K02198,K04016 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 578.0
YYD1_k127_875229_1 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000004852 53.0
YYD1_k127_876101_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 473.0
YYD1_k127_876101_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003699 284.0
YYD1_k127_876101_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000004178 273.0
YYD1_k127_876101_3 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000383 213.0
YYD1_k127_876885_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 532.0
YYD1_k127_876885_1 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 368.0
YYD1_k127_876885_2 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.00000000000000000000000000000000000000000000000000000000000000001564 241.0
YYD1_k127_876885_3 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000000000000000004179 231.0
YYD1_k127_876885_4 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000002764 216.0
YYD1_k127_876885_5 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.00000000000000000000000000000000000000000000008237 170.0
YYD1_k127_876885_6 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.00000000000000000000000000000000001793 153.0
YYD1_k127_876885_7 Long-chain fatty acid--CoA ligase K01897 - 6.2.1.3 0.00000004611 64.0
YYD1_k127_877651_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007121 393.0
YYD1_k127_877651_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000007154 216.0
YYD1_k127_877651_2 B3/4 domain - - - 0.0000000000000000000000000000000004425 149.0
YYD1_k127_877651_3 Methyltransferase type 11 - - - 0.0000000000000000006416 98.0
YYD1_k127_877651_4 cobalamin-transporting ATPase activity K16087 - - 0.00000000000886 79.0
YYD1_k127_882624_0 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008803 477.0
YYD1_k127_882624_1 Pyridoxal-phosphate dependent enzyme K01697 - 4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 477.0
YYD1_k127_882624_2 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000001123 211.0
YYD1_k127_882624_3 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000009897 181.0
YYD1_k127_882624_4 nucleotide catabolic process - - - 0.000000000000000000000000000000000002031 153.0
YYD1_k127_882624_5 HEPN domain K00392 - 1.8.7.1 0.0000000008219 68.0
YYD1_k127_882624_6 Domain of unknown function DUF11 - - - 0.000002361 61.0
YYD1_k127_890357_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 - 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 505.0
YYD1_k127_890357_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006989 474.0
YYD1_k127_89375_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009876 606.0
YYD1_k127_89375_1 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000001249 198.0
YYD1_k127_89375_10 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000003333 58.0
YYD1_k127_89375_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000002511 162.0
YYD1_k127_89375_3 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000002249 146.0
YYD1_k127_89375_4 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000009945 144.0
YYD1_k127_89375_5 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000007167 105.0
YYD1_k127_89375_6 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000002913 93.0
YYD1_k127_89375_7 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000002618 90.0
YYD1_k127_89375_8 Peptidylprolyl isomerase K01802,K03769 - 5.2.1.8 0.0000000001983 73.0
YYD1_k127_89375_9 protein trimerization K02453 - - 0.000002021 60.0
YYD1_k127_894905_0 - - - - 0.000456 50.0
YYD1_k127_894905_1 Putative zinc-finger - - - 0.0005457 50.0
YYD1_k127_898963_0 Encoded by - - - 0.000000000000006854 87.0
YYD1_k127_91276_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02372,K02535,K13599,K16363 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 449.0
YYD1_k127_91276_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 336.0
YYD1_k127_91276_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000006715 259.0
YYD1_k127_91276_3 PFAM oxidoreductase domain protein K09949 - - 0.0000000000000000000000000000000000000000000000000000000000003684 226.0
YYD1_k127_91276_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.000000000000000000000000000000000000000000000000000001036 196.0
YYD1_k127_91276_5 Domain of unknown function (DUF374) K02527,K09778 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000001846 181.0
YYD1_k127_91276_6 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000002579 108.0
YYD1_k127_919274_0 Aminotransferase class-V K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 431.0
YYD1_k127_919274_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K10125 - 2.7.13.3 0.00000000000000000000000000000000000002268 165.0
YYD1_k127_919274_2 Histidine kinase K01768,K12132 - 2.7.11.1,4.6.1.1 0.0000000000000000000000003869 112.0
YYD1_k127_919274_3 PFAM response regulator receiver - - - 0.0000000000000000000000005992 115.0
YYD1_k127_919274_4 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain K01840 - 5.4.2.8 0.0000000001073 68.0
YYD1_k127_919337_0 protein conserved in bacteria K09859 - - 0.00000000000000000000000000043 130.0
YYD1_k127_919337_1 Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) K07337,K21008 GO:0000270,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009279,GO:0009987,GO:0016020,GO:0019867,GO:0019899,GO:0030203,GO:0030234,GO:0030312,GO:0030313,GO:0031241,GO:0031975,GO:0034645,GO:0042546,GO:0043085,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044093,GO:0044237,GO:0044249,GO:0044260,GO:0044425,GO:0044462,GO:0044464,GO:0050790,GO:0065007,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0098552,GO:0098772,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.000004886 48.0
YYD1_k127_919731_0 PFAM Major Facilitator Superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 377.0
YYD1_k127_919731_1 PFAM RNA binding S1 domain protein K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001934 260.0
YYD1_k127_919731_2 PFAM ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000767 255.0
YYD1_k127_919731_3 RNA recognition motif - - - 0.00000000000000000000000000009128 119.0
YYD1_k127_919731_4 peroxiredoxin activity K01607 - 4.1.1.44 0.0000000000000000000000000007773 121.0
YYD1_k127_919731_5 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.000000000000000000000000004814 114.0
YYD1_k127_925138_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009669 270.0
YYD1_k127_925138_1 Cytochrome c554 and c-prime K03620 - - 0.00000000000000000000000000000000000000000000000000000000000000000001635 259.0
YYD1_k127_933050_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 333.0
YYD1_k127_933050_1 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.000000000000000000000000000000000000000000000000000000006576 206.0
YYD1_k127_933050_2 chorismate mutase K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 0.000000000000000000000000000000000000000000000000000004577 204.0
YYD1_k127_933050_3 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.0000000000000000000000000000000000000000000000736 179.0
YYD1_k127_933050_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000000000000001103 163.0
YYD1_k127_933050_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000006151 130.0
YYD1_k127_939771_0 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 4.752e-280 879.0
YYD1_k127_939771_1 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007038 422.0
YYD1_k127_939771_2 CHAT domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000515 271.0
YYD1_k127_939771_3 Belongs to the peptidase S8 family K08651,K14743 - 3.4.21.66 0.00000000000000000000000000000000000000000000000002544 201.0
YYD1_k127_939771_4 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000471 108.0
YYD1_k127_939771_5 haloacid dehalogenase-like hydrolase K01079 - 3.1.3.3 0.00000000000006439 81.0
YYD1_k127_945306_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 343.0
YYD1_k127_945306_1 Aminotransferase class I and II K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 332.0
YYD1_k127_945306_2 - - - - 0.0000000000000000000000000000000000000000000000000000000005907 205.0
YYD1_k127_945306_3 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000003979 184.0
YYD1_k127_945306_4 Disulphide isomerase - - - 0.000000000000000000000000000000000000000001317 169.0
YYD1_k127_955889_0 AIR synthase related protein, C-terminal domain K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 342.0
YYD1_k127_955889_1 hydrogenase expression formation protein HypD K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000005122 241.0
YYD1_k127_957776_0 transferase activity, transferring glycosyl groups K00754 GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006963 387.0
YYD1_k127_957776_1 pfkB family carbohydrate kinase K00852,K00856 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004001,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005975,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019200,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032559,GO:0032560,GO:0032561,GO:0032567,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046390,GO:0046483,GO:0046835,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004323 311.0
YYD1_k127_957776_2 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005035 284.0
YYD1_k127_957776_3 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000008726 235.0
YYD1_k127_957776_4 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.000000000000000000000000000000000000006927 157.0
YYD1_k127_957776_5 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000005064 149.0
YYD1_k127_957776_6 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000001729 123.0
YYD1_k127_957776_7 - - - - 0.000000000002074 79.0
YYD1_k127_957776_8 Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH K22136 - - 0.0003208 52.0
YYD1_k127_974087_0 Sodium/hydrogen exchanger family K11105 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004806 527.0
YYD1_k127_978446_0 malic enzyme K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 1.397e-209 685.0
YYD1_k127_978446_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000000000000000000000002262 173.0
YYD1_k127_978446_2 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000002465 132.0
YYD1_k127_978446_3 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.00001226 59.0