Overview

ID MAG04622
Name YYD1_bin.18
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Desulfobacterota_E
Class Deferrimicrobia
Order Deferrimicrobiales
Family Deferrimicrobiaceae
Genus
Species
Assembly information
Completeness (%) 89.48
Contamination (%) 3.16
GC content (%) 69.0
N50 (bp) 9,126
Genome size (bp) 2,160,971

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2062

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_100850_0 PFAM multicopper oxidase - - - 5.352e-235 746.0
YYD1_k127_100850_1 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009528 518.0
YYD1_k127_100850_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 288.0
YYD1_k127_100850_3 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000002088 229.0
YYD1_k127_100850_4 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000005895 191.0
YYD1_k127_100850_5 chain release factor K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.0000000000000000000000000000000000000000837 154.0
YYD1_k127_100850_6 Putative zinc-finger - - - 0.000000000000375 74.0
YYD1_k127_1014667_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.021e-253 794.0
YYD1_k127_1014667_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 2.48e-213 681.0
YYD1_k127_1014667_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006108 471.0
YYD1_k127_1014667_3 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 430.0
YYD1_k127_1014667_4 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000001154 224.0
YYD1_k127_1014667_5 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000000000000000000001265 179.0
YYD1_k127_102565_0 Leucyl-tRNA synthetase, Domain 2 K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 445.0
YYD1_k127_102565_1 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000002407 63.0
YYD1_k127_1054448_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004746 565.0
YYD1_k127_1054448_1 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002911 274.0
YYD1_k127_1054448_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000004147 205.0
YYD1_k127_1054448_3 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000003624 176.0
YYD1_k127_1054448_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000001041 144.0
YYD1_k127_1054448_5 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000002716 113.0
YYD1_k127_1054448_6 RimM N-terminal domain K02860 - - 0.00000000000000000001248 102.0
YYD1_k127_1054448_7 Belongs to the UPF0102 family K07460 - - 0.000000000000003255 89.0
YYD1_k127_1054448_8 - - - - 0.00000000000001723 79.0
YYD1_k127_108095_0 Polysaccharide biosynthesis protein CapD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 544.0
YYD1_k127_108095_1 Cytochrome C' - - - 0.00009202 51.0
YYD1_k127_108095_2 general secretion pathway protein - - - 0.0008363 50.0
YYD1_k127_1107622_0 response regulator K07712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 383.0
YYD1_k127_1107622_1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 381.0
YYD1_k127_1107622_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005734 287.0
YYD1_k127_1107622_3 Dual specificity phosphatase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000009559 213.0
YYD1_k127_1107622_4 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000003689 156.0
YYD1_k127_1107622_5 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000004989 132.0
YYD1_k127_1107622_6 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.00000000000000000004186 90.0
YYD1_k127_1118513_0 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 1.641e-233 728.0
YYD1_k127_1118513_1 PFAM cytochrome C oxidase mono-heme subunit FixO K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 329.0
YYD1_k127_1118513_2 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000067 295.0
YYD1_k127_1118513_3 Heavy metal translocating P-type atpase K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000002033 268.0
YYD1_k127_1118513_4 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000001456 176.0
YYD1_k127_1118513_5 PFAM cytochrome c, class I K00406 - - 0.0000000000000000000000000000000000001872 146.0
YYD1_k127_1118513_6 - - - - 0.000000000000003882 88.0
YYD1_k127_116085_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 413.0
YYD1_k127_116085_1 Histidine kinase - - - 0.000000000000000000000000000000000000001463 156.0
YYD1_k127_116085_3 Beta-galactosidase jelly roll domain - - - 0.000129 53.0
YYD1_k127_118563_0 SMART Nucleotide binding protein, PINc K07175 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009985 550.0
YYD1_k127_118563_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 319.0
YYD1_k127_118563_2 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000328 206.0
YYD1_k127_118563_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000000000000000000000000000001754 184.0
YYD1_k127_118563_4 PFAM OmpA MotB domain protein K03640 - - 0.000000000000000000000000000000000005729 146.0
YYD1_k127_118563_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000001396 136.0
YYD1_k127_118563_6 Carboxypeptidase regulatory-like domain - - - 0.00000000000000002528 89.0
YYD1_k127_1190029_0 Flavin containing amine oxidoreductase K00231,K01854 - 1.3.3.15,1.3.3.4,5.4.99.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001484 284.0
YYD1_k127_1190029_1 phospho-N-acetylmuramoyl-pentapeptide-transferase activity K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000003493 277.0
YYD1_k127_1190029_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004655 269.0
YYD1_k127_1190029_3 MMPL family K07003 - - 0.000000000000000000000000000000000000000000000001654 189.0
YYD1_k127_1190029_4 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000001433 184.0
YYD1_k127_1190029_5 ABC-type transport system involved in multi-copper enzyme maturation, permease component - - - 0.00000000000000000000000000000000000000000004524 174.0
YYD1_k127_1190029_6 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000001231 169.0
YYD1_k127_1190029_7 -O-antigen K02847,K13009,K16705 GO:0003674,GO:0003824,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000005203 151.0
YYD1_k127_1190029_8 Prokaryotic N-terminal methylation motif K02650 GO:0005575,GO:0005623,GO:0009289,GO:0042995,GO:0044464 - 0.000000000000000000000000000002229 125.0
YYD1_k127_1218129_0 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000004782 270.0
YYD1_k127_1218129_1 AAA domain - - - 0.000000000000000000000000000000371 125.0
YYD1_k127_1218129_2 - - - - 0.00000000000005654 76.0
YYD1_k127_1218129_3 OsmC-like protein - - - 0.00000000263 61.0
YYD1_k127_1218129_4 oxidoreductase activity K02674 - - 0.000000003583 63.0
YYD1_k127_1232368_0 helix_turn_helix, Lux Regulon K03556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007668 279.0
YYD1_k127_1232368_1 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000000000000000001682 155.0
YYD1_k127_1255645_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 1.734e-232 728.0
YYD1_k127_1255645_1 response regulator - - - 0.0000000000000000000000000019 125.0
YYD1_k127_126006_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 4.266e-289 909.0
YYD1_k127_126006_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.664e-210 677.0
YYD1_k127_126006_10 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000000000000000003574 202.0
YYD1_k127_126006_11 Cytochrome b subunit of formate dehydrogenase-like protein - - - 0.000000000000000000000000000000000000000001202 165.0
YYD1_k127_126006_12 DNA polymerase III, delta' K02341 - 2.7.7.7 0.0000000000000000000000000000000000001928 161.0
YYD1_k127_126006_13 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000001743 139.0
YYD1_k127_126006_14 Late embryogenesis abundant protein - - - 0.000004679 56.0
YYD1_k127_126006_2 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 550.0
YYD1_k127_126006_3 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 503.0
YYD1_k127_126006_4 FAD dependent oxidoreductase K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 449.0
YYD1_k127_126006_5 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 355.0
YYD1_k127_126006_6 nucleic acid binding K03698 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 310.0
YYD1_k127_126006_7 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K00090 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0030267,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.1.1.215,1.1.1.26,1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 304.0
YYD1_k127_126006_8 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002505 293.0
YYD1_k127_126006_9 PSP1 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000147 236.0
YYD1_k127_1361600_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 346.0
YYD1_k127_1361600_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 309.0
YYD1_k127_1361600_10 TIGRFAM regulatory protein, FmdB - - - 0.00004144 52.0
YYD1_k127_1361600_11 Protein of unknown function (DUF3106) - - - 0.0003117 53.0
YYD1_k127_1361600_2 GTP cyclohydrolase I K00950,K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006082,GO:0006139,GO:0006575,GO:0006725,GO:0006729,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008616,GO:0009058,GO:0009108,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0019752,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0042455,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901657,GO:1901659 2.7.6.3,3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000003773 255.0
YYD1_k127_1361600_3 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000002072 176.0
YYD1_k127_1361600_4 response regulator receiver K07714,K10943 - - 0.00000000000000000000000000000000000000003131 158.0
YYD1_k127_1361600_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000002805 124.0
YYD1_k127_1361600_6 Domain of unknown function DUF302 - - - 0.0000000000000000000000371 104.0
YYD1_k127_1361600_7 Protein of unknown function (DUF2892) - - - 0.000000000000000002529 89.0
YYD1_k127_1361600_8 Rubrerythrin - - - 0.00000000007359 72.0
YYD1_k127_1361600_9 Putative zinc-finger - - - 0.00001948 55.0
YYD1_k127_1367118_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 288.0
YYD1_k127_1367118_1 TIGRFAM M6 family metalloprotease domain - - - 0.000000000000000000000000000001243 140.0
YYD1_k127_1367118_2 radical SAM domain protein K20444 - - 0.00000000000000004891 85.0
YYD1_k127_1380437_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 400.0
YYD1_k127_1380437_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 328.0
YYD1_k127_1380437_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007325 299.0
YYD1_k127_1380437_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.00000000000000000000000000000000000000000000000000000003785 202.0
YYD1_k127_1380437_4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000009214 119.0
YYD1_k127_1380437_5 THUMP - - - 0.000000000000000000000007798 107.0
YYD1_k127_1400670_0 Molybdopterin oxidoreductase Fe4S4 domain K00370 - 1.7.5.1 0.0 1817.0
YYD1_k127_1400670_1 Nitrate reductase, beta subunit K00371,K17051 - 1.7.5.1 5.697e-224 753.0
YYD1_k127_1400670_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0002787 48.0
YYD1_k127_1400670_2 MmgE PrpD family protein K01720 - 4.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 575.0
YYD1_k127_1400670_3 Major Facilitator Superfamily K02575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 490.0
YYD1_k127_1400670_4 Bacterial periplasmic substrate-binding proteins K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 443.0
YYD1_k127_1400670_5 (2R)-phospho-3-sulfolactate synthase (ComA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000473 422.0
YYD1_k127_1400670_6 Binding-protein-dependent transport system inner membrane component K10003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003822 289.0
YYD1_k127_1400670_7 nitrate reductase activity K00370,K00374,K02575 GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0008940,GO:0009055,GO:0009061,GO:0009325,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016661,GO:0019645,GO:0020037,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0036293,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044799,GO:0045333,GO:0046906,GO:0048037,GO:0050896,GO:0055114,GO:0070469,GO:0070470,GO:0070482,GO:0071944,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901363,GO:1902494,GO:1990204 1.7.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000005484 249.0
YYD1_k127_1400670_8 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000000000001727 200.0
YYD1_k127_1400670_9 Nitrate reductase delta subunit K00373 - - 0.0000000000000000000000000000001605 130.0
YYD1_k127_1460005_0 Polypeptide deformylase K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000004428 197.0
YYD1_k127_1460005_1 ACT domain K03567 - - 0.000000000000000000000000000000000000000000000003706 178.0
YYD1_k127_1460005_2 helix_turn_helix, cAMP Regulatory protein K01420,K21563 - - 0.0000000000000000000000000000000000000000000007703 174.0
YYD1_k127_1460005_3 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000002125 158.0
YYD1_k127_1460005_4 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000001349 134.0
YYD1_k127_1460005_5 CoA-transferase family III - - - 0.00000000000000000000166 101.0
YYD1_k127_1482722_0 PFAM Glucose Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006244 446.0
YYD1_k127_1482722_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009682 359.0
YYD1_k127_1482722_2 Single cache domain 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 363.0
YYD1_k127_1482722_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000005288 221.0
YYD1_k127_1482722_4 Membrane - - - 0.000000000000000000000000000000000006156 143.0
YYD1_k127_1482722_5 catechol 2,3-dioxygenase activity - - - 0.00000000000000000000000000001183 125.0
YYD1_k127_1482722_6 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000001944 102.0
YYD1_k127_1482722_7 - - - - 0.00000000001398 76.0
YYD1_k127_1517878_0 metalloendopeptidase activity K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000007063 237.0
YYD1_k127_1517878_1 Ferritin-like domain K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000002802 214.0
YYD1_k127_1517878_2 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000002661 205.0
YYD1_k127_1517878_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000009103 163.0
YYD1_k127_1517878_4 Glutaredoxin K03676 - - 0.000000000301 62.0
YYD1_k127_1517878_5 PFAM Rubrerythrin - - - 0.00001093 54.0
YYD1_k127_1517878_6 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.000351 51.0
YYD1_k127_1520730_0 Multicopper oxidase - - - 0.0 2104.0
YYD1_k127_1520730_1 Cytochrome D1 heme domain - - - 8.969e-207 668.0
YYD1_k127_1520730_10 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000000000000000000000002033 209.0
YYD1_k127_1520730_11 AAA domain - - - 0.0000000000000000000000000000000000000000001429 161.0
YYD1_k127_1520730_12 Phospholipid methyltransferase - - - 0.000000000000000000000000000000000000009821 154.0
YYD1_k127_1520730_13 Haem-degrading - - - 0.00000000000000000000000000000000000003488 148.0
YYD1_k127_1520730_14 - - - - 0.000000000000000000002948 101.0
YYD1_k127_1520730_15 thiamine biosynthesis protein ThiS K03154 - - 0.0000000000000001724 83.0
YYD1_k127_1520730_16 serine threonine protein kinase - - - 0.0000000000000002842 92.0
YYD1_k127_1520730_17 PFAM Colicin V production protein K03558 - - 0.000000000004267 73.0
YYD1_k127_1520730_2 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 548.0
YYD1_k127_1520730_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K21025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 456.0
YYD1_k127_1520730_4 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 397.0
YYD1_k127_1520730_5 biosynthesis protein ThiH K03150 - 4.1.99.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003744 385.0
YYD1_k127_1520730_6 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005568 391.0
YYD1_k127_1520730_7 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000279 292.0
YYD1_k127_1520730_8 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001206 285.0
YYD1_k127_1520730_9 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005095 295.0
YYD1_k127_1520896_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 3.103e-290 929.0
YYD1_k127_1520896_1 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007792 472.0
YYD1_k127_1520896_10 - - - - 0.0000000000000000000000000000000000000000000007881 184.0
YYD1_k127_1520896_11 PFAM SNARE associated Golgi protein - - - 0.000000000000000000000000008724 126.0
YYD1_k127_1520896_12 Domain of unknown function (DUF3332) - - - 0.000000000000000000001228 102.0
YYD1_k127_1520896_13 Periplasmic copper-binding protein (NosD) - - - 0.0000000005757 72.0
YYD1_k127_1520896_2 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 434.0
YYD1_k127_1520896_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 338.0
YYD1_k127_1520896_4 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 299.0
YYD1_k127_1520896_5 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004511 292.0
YYD1_k127_1520896_6 alginic acid biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000001033 196.0
YYD1_k127_1520896_7 Glycosyl transferase group 2 family protein - - - 0.000000000000000000000000000000000000000000000000001564 203.0
YYD1_k127_1520896_8 - - - - 0.0000000000000000000000000000000000000000000000001486 193.0
YYD1_k127_1520896_9 domain protein - - - 0.000000000000000000000000000000000000000000000426 189.0
YYD1_k127_1566000_0 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 370.0
YYD1_k127_1566000_1 peptidase U32 - - - 0.0000000005288 69.0
YYD1_k127_1566000_2 ResB-like family - - - 0.000000001378 69.0
YYD1_k127_1566000_3 PFAM Substrate-binding region of ABC-type glycine betaine transport system K05845,K05846 - - 0.0000003284 63.0
YYD1_k127_1566000_4 Peptidase family U32 - - - 0.00008661 49.0
YYD1_k127_1669768_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003324 555.0
YYD1_k127_1669768_1 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 400.0
YYD1_k127_1669768_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 347.0
YYD1_k127_1669768_3 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009142 317.0
YYD1_k127_1669768_4 extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004974 281.0
YYD1_k127_1669768_5 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000001162 237.0
YYD1_k127_1669768_6 dehydratase K17865 - 4.2.1.55 0.0000000000000000000000000000000000000000201 166.0
YYD1_k127_1669768_7 YbaK proline--tRNA ligase associated domain protein - - - 0.0000000000000000000000000004175 119.0
YYD1_k127_1669768_8 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.000000000000000000003955 103.0
YYD1_k127_1669768_9 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.000000000002438 66.0
YYD1_k127_1706464_0 PFAM NHL repeat containing protein - - - 7.928e-235 786.0
YYD1_k127_1706464_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 597.0
YYD1_k127_1706464_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007588 521.0
YYD1_k127_1706464_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009576 396.0
YYD1_k127_1706464_4 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000007119 88.0
YYD1_k127_1714224_0 PFAM permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 386.0
YYD1_k127_1714224_1 DNA topoisomerase VI subunit A K03166 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000001674 221.0
YYD1_k127_1714224_2 PFAM Cobyrinic acid ac-diamide synthase K07321 - - 0.000000000000000000000000000000000000000000000000006945 198.0
YYD1_k127_1714224_3 PFAM Respiratory-chain NADH dehydrogenase 24 Kd subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000001022 174.0
YYD1_k127_1735017_0 IMP dehydrogenase / GMP reductase domain K00088 - 1.1.1.205 1.056e-209 661.0
YYD1_k127_1735017_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005547 355.0
YYD1_k127_1735017_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001676 275.0
YYD1_k127_1735017_3 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000007027 175.0
YYD1_k127_1735017_4 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000002631 63.0
YYD1_k127_1735017_5 ribonuclease BN - - - 0.00000009997 65.0
YYD1_k127_176229_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 3.96e-246 788.0
YYD1_k127_176229_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004317 476.0
YYD1_k127_176229_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002782 371.0
YYD1_k127_176229_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008112 338.0
YYD1_k127_176229_4 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000005161 256.0
YYD1_k127_176229_5 including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000002519 146.0
YYD1_k127_176229_6 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000009118 91.0
YYD1_k127_176229_7 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000002409 68.0
YYD1_k127_176229_8 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000008546 65.0
YYD1_k127_1812746_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006808 304.0
YYD1_k127_1812746_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000001959 214.0
YYD1_k127_1812746_2 denitrification pathway - - - 0.000000000000000000000000000000000000000001238 162.0
YYD1_k127_1825763_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02652 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 548.0
YYD1_k127_1825763_1 Bacterial type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 359.0
YYD1_k127_1825763_10 type IV pilus modification protein PilV K02458 - - 0.00000004412 64.0
YYD1_k127_1825763_11 general secretion pathway protein K02457 - - 0.000007777 59.0
YYD1_k127_1825763_12 pilus assembly protein PilW K02459 - - 0.00001437 56.0
YYD1_k127_1825763_13 general secretion pathway protein K02462 - - 0.00003695 55.0
YYD1_k127_1825763_2 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005446 297.0
YYD1_k127_1825763_3 Type II secretion system K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004766 261.0
YYD1_k127_1825763_4 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000006506 248.0
YYD1_k127_1825763_5 PFAM ATP-binding region, ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000508 229.0
YYD1_k127_1825763_6 peroxiredoxin activity - - - 0.00000000000000000000003872 105.0
YYD1_k127_1825763_7 Type II secretion system (T2SS), protein K K02460 - - 0.000000000000006785 88.0
YYD1_k127_1825763_8 - - - - 0.000000000000009534 83.0
YYD1_k127_1825763_9 fimbrial assembly K02461 - - 0.0000000001472 74.0
YYD1_k127_1827800_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000105 219.0
YYD1_k127_1827800_1 TIGRFAM tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000431 209.0
YYD1_k127_1827800_2 Belongs to the pseudouridine synthase RsuA family K06178,K06181,K06182 - 5.4.99.20,5.4.99.21,5.4.99.22 0.0000000000000000000000000000000000000000000000000000000001946 223.0
YYD1_k127_1827800_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000692 177.0
YYD1_k127_1866958_0 Fructose-1,6-bisphosphatase K01622 - 3.1.3.11,4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 558.0
YYD1_k127_1866958_1 Male sterility protein K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004791 330.0
YYD1_k127_1866958_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002462 315.0
YYD1_k127_1866958_3 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 305.0
YYD1_k127_1866958_4 - - - - 0.000001686 51.0
YYD1_k127_1898150_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000515 633.0
YYD1_k127_1898150_1 Anthranilate synthase component I, N terminal region K01657,K13503 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 507.0
YYD1_k127_1898150_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 452.0
YYD1_k127_1898150_3 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.000000000000000000000000000000000000000000000000001684 208.0
YYD1_k127_1898150_4 TIGRFAM Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000006379 103.0
YYD1_k127_1898150_5 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000103 97.0
YYD1_k127_1898150_6 Belongs to the TrpF family K01817 - 5.3.1.24 0.0003002 53.0
YYD1_k127_1898150_7 Sporulation related domain - - - 0.0009263 49.0
YYD1_k127_1925226_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 2.038e-208 654.0
YYD1_k127_1925226_1 Belongs to the EPSP synthase family. MurA subfamily K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 474.0
YYD1_k127_1925226_10 Binds the 23S rRNA K02909 - - 0.0000000000000000000002811 111.0
YYD1_k127_1925226_11 Diguanylate cyclase with GAF sensor - - - 0.00000000000000000001503 103.0
YYD1_k127_1925226_12 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000002113 57.0
YYD1_k127_1925226_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 432.0
YYD1_k127_1925226_3 PFAM peptidase S1 and S6, chymotrypsin Hap K04771,K04772 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004094 317.0
YYD1_k127_1925226_4 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008631 301.0
YYD1_k127_1925226_5 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000003462 263.0
YYD1_k127_1925226_6 Protein of unknown function (DUF1385) - - - 0.0000000000000000000000000000000000000000000000000000000000000001283 243.0
YYD1_k127_1925226_7 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.00000000000000000000000000000000000000000000000000000003219 206.0
YYD1_k127_1925226_8 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000005005 136.0
YYD1_k127_1925226_9 - - - - 0.000000000000000000000001384 105.0
YYD1_k127_1935328_0 Aminotransferase class I and II K10206,K14261 GO:0003674,GO:0003824,GO:0004021,GO:0006082,GO:0006090,GO:0006520,GO:0006522,GO:0006523,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009078,GO:0009079,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019272,GO:0019752,GO:0030632,GO:0032787,GO:0042851,GO:0042852,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046144,GO:0046145,GO:0046394,GO:0046416,GO:0046436,GO:0046437,GO:0047635,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 563.0
YYD1_k127_1935328_1 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008286 522.0
YYD1_k127_1935328_10 2-hydroxyglutaryl-CoA dehydratase, D-component K04112,K20026 - 1.3.7.8,4.2.1.157 0.00000000001785 71.0
YYD1_k127_1935328_11 4 iron, 4 sulfur cluster binding K00176,K05524 - 1.2.7.3 0.0000006615 62.0
YYD1_k127_1935328_2 Homoserine dehydrogenase K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 498.0
YYD1_k127_1935328_3 Proposed homoserine kinase K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 458.0
YYD1_k127_1935328_4 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009583 420.0
YYD1_k127_1935328_5 TIGRFAM fructose-1,6-bisphosphatase, class II K02446 - 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 405.0
YYD1_k127_1935328_6 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008829 380.0
YYD1_k127_1935328_7 PFAM Pyruvate ketoisovalerate oxidoreductase K00177 - 1.2.7.3 0.000000000000000000000000000000000000000000000000002502 200.0
YYD1_k127_1935328_8 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000000000007762 173.0
YYD1_k127_1935328_9 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000001401 128.0
YYD1_k127_1942399_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 503.0
YYD1_k127_1942399_1 4Fe-4S dicluster domain K11473 - - 0.00000000000000000000000000000000003014 148.0
YYD1_k127_1942399_2 Alpha beta hydrolase - - - 0.000000000000000001075 87.0
YYD1_k127_1959672_0 Enoyl-(Acyl carrier protein) reductase K00034,K00059 - 1.1.1.100,1.1.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000001999 252.0
YYD1_k127_1959672_1 Belongs to the pyrroline-5-carboxylate reductase family K00286 GO:0003674,GO:0003824,GO:0004735,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009651,GO:0016491,GO:0016645,GO:0016646,GO:0030312,GO:0044424,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000002934 215.0
YYD1_k127_1959672_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000003553 183.0
YYD1_k127_1959672_3 YGGT family K02221 - - 0.00000000000000000000000000005573 119.0
YYD1_k127_1959672_4 - - - - 0.0000000000000000000002264 102.0
YYD1_k127_1959672_5 Belongs to the UPF0235 family K09131 - - 0.00000000000000000009817 96.0
YYD1_k127_1959672_6 Belongs to the 'phage' integrase family K04763 - - 0.0000000000005498 69.0
YYD1_k127_1959672_7 Transcriptional regulator - - - 0.0000001034 55.0
YYD1_k127_1961829_0 metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000004071 221.0
YYD1_k127_1961829_1 PFAM regulatory protein LuxR K03556 - - 0.0000000000000000000000000000000000000000000000002924 187.0
YYD1_k127_1961829_2 AcrB/AcrD/AcrF family K03296,K18138 - - 0.00000000000000000000000000000009676 124.0
YYD1_k127_1967170_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 573.0
YYD1_k127_1967170_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009556 561.0
YYD1_k127_1967170_2 phosphoenolpyruvate carboxykinase (ATP) activity K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004307 499.0
YYD1_k127_1967170_3 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 342.0
YYD1_k127_1967170_4 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00005491 54.0
YYD1_k127_2000878_0 COG0798 Arsenite efflux pump ACR3 and related K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005699 469.0
YYD1_k127_2000878_1 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000007272 229.0
YYD1_k127_2000878_2 Cytochrome C biogenesis protein - - - 0.000000000000000000000000000000000000000000000000000001504 206.0
YYD1_k127_2000878_3 Predicted permease K07089 - - 0.000000000000000000000000000000000000000001161 161.0
YYD1_k127_2000878_4 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000000006052 125.0
YYD1_k127_2000878_5 - - - - 0.00000000000000000000001626 108.0
YYD1_k127_2000878_6 redox-active disulfide protein 2 - - - 0.000000000000000000002991 95.0
YYD1_k127_2000878_7 PFAM Thioredoxin K03671 - - 0.00000000004211 70.0
YYD1_k127_2042547_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 581.0
YYD1_k127_2042547_1 Fructose-1,6-bisphosphatase K01622 - 3.1.3.11,4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009662 573.0
YYD1_k127_2042547_10 - - - - 0.00000002771 59.0
YYD1_k127_2042547_11 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000002332 52.0
YYD1_k127_2042547_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 520.0
YYD1_k127_2042547_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 386.0
YYD1_k127_2042547_4 Male sterility protein K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008085 349.0
YYD1_k127_2042547_5 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005412 279.0
YYD1_k127_2042547_6 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001331 259.0
YYD1_k127_2042547_7 DUF218 domain - - - 0.00000000000000000000000000000000000000000000007959 179.0
YYD1_k127_2042547_8 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000003683 135.0
YYD1_k127_2042547_9 HAF family - - - 0.000000000000000000008937 108.0
YYD1_k127_2054626_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007346 417.0
YYD1_k127_2054626_1 Transketolase, pyrimidine binding domain K00162,K00167,K21417 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944,GO:0140030,GO:0140032 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 376.0
YYD1_k127_2054626_2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006664 325.0
YYD1_k127_2054626_3 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 308.0
YYD1_k127_2054626_4 e3 binding domain K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007864 311.0
YYD1_k127_2054626_5 PFAM Aldehyde dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000003159 212.0
YYD1_k127_2056399_0 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 591.0
YYD1_k127_2056399_1 acyl-CoA dehydrogenase activity K00252 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005956 479.0
YYD1_k127_2056399_2 Major Facilitator Superfamily K08224 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004605 389.0
YYD1_k127_2056399_3 intermembrane lipid transfer K06192 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0009987,GO:0010876,GO:0016020,GO:0016021,GO:0016043,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0042597,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071840,GO:0071944,GO:0120009 - 0.0000000000000000000000000000000000000000000000000000000000000000000003884 248.0
YYD1_k127_2056399_4 paraquat-inducible protein A K03808 - - 0.000000000000000000000000000000000000000000000001566 182.0
YYD1_k127_2056399_5 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000000004248 148.0
YYD1_k127_2056399_6 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.000000000000000000000000000000000001081 146.0
YYD1_k127_2060286_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 5.679e-289 911.0
YYD1_k127_2060286_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 529.0
YYD1_k127_2060286_10 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000000000001709 130.0
YYD1_k127_2060286_11 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000000000002498 132.0
YYD1_k127_2060286_12 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000000000000008977 111.0
YYD1_k127_2060286_13 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000002999 98.0
YYD1_k127_2060286_14 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.0000000000000000003807 94.0
YYD1_k127_2060286_15 Modulates RecA activity K03565 GO:0003674,GO:0005488,GO:0005515,GO:0006282,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0031323,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071496,GO:0080090,GO:0080134,GO:0080135,GO:0098772,GO:2001020 - 0.000000005617 64.0
YYD1_k127_2060286_17 Outer membrane assembly lipoprotein YfiO K05807 - - 0.00003055 53.0
YYD1_k127_2060286_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 502.0
YYD1_k127_2060286_3 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 381.0
YYD1_k127_2060286_4 PFAM peptidase S58, DmpA K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000236 276.0
YYD1_k127_2060286_5 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009327 271.0
YYD1_k127_2060286_6 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001095 263.0
YYD1_k127_2060286_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000001751 175.0
YYD1_k127_2060286_8 PBS lyase HEAT-like repeat - - - 0.0000000000000000000000000000000000000000001948 178.0
YYD1_k127_2060286_9 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000002651 150.0
YYD1_k127_2060955_0 Elongation factor Tu domain 2 K02355 - - 1.536e-240 763.0
YYD1_k127_2060955_1 Glycosyltransferase like family 2 K11936 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 443.0
YYD1_k127_2060955_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009177 325.0
YYD1_k127_2060955_3 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000002853 258.0
YYD1_k127_2060955_4 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009655 250.0
YYD1_k127_2060955_5 - - - - 0.00000000000000000000004038 115.0
YYD1_k127_2062098_0 DNA replication proofreading K02336,K06877 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 484.0
YYD1_k127_2062098_1 Isochorismatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 408.0
YYD1_k127_2062098_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000002589 149.0
YYD1_k127_2062098_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - 0.000000000000001482 84.0
YYD1_k127_2062098_4 - - - - 0.00000000000008366 75.0
YYD1_k127_2062098_5 cellulase activity - - - 0.000000000001077 81.0
YYD1_k127_2062098_6 ABC transporter K02003 - - 0.000000009691 56.0
YYD1_k127_2072383_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 7.259e-262 819.0
YYD1_k127_2072383_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 8.362e-198 629.0
YYD1_k127_2072383_10 Protein of unknown function (DUF3343) - - - 0.00000000000009811 77.0
YYD1_k127_2072383_11 Protein of unknown function (DUF721) - - - 0.0000002278 61.0
YYD1_k127_2072383_2 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009789 523.0
YYD1_k127_2072383_3 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 350.0
YYD1_k127_2072383_4 Lytic transglycosylase, SLT, LysM and LysM domain-containing K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 313.0
YYD1_k127_2072383_5 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000000000002384 199.0
YYD1_k127_2072383_6 Putative RNA methylase family UPF0020 K15460 - 2.1.1.223 0.00000000000000000000000000000000000000000000005316 179.0
YYD1_k127_2072383_7 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000006432 173.0
YYD1_k127_2072383_8 Belongs to the SUA5 family K07566 - 2.7.7.87 0.000000000000000000000000000000000006867 145.0
YYD1_k127_2072383_9 - - - - 0.000000000000001567 84.0
YYD1_k127_2134132_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 4.387e-215 679.0
YYD1_k127_2134132_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 573.0
YYD1_k127_2134132_10 YbbR-like protein - - - 0.0000000000000000000000000000009314 130.0
YYD1_k127_2134132_11 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 - 0.000000000000000000000000001542 130.0
YYD1_k127_2134132_12 Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins K13643 GO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000006493 123.0
YYD1_k127_2134132_13 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000002659 108.0
YYD1_k127_2134132_14 photosystem II stabilization K02237 - - 0.000001165 58.0
YYD1_k127_2134132_2 PFAM aspartate glutamate uridylate kinase K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006781 552.0
YYD1_k127_2134132_3 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 440.0
YYD1_k127_2134132_4 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007305 421.0
YYD1_k127_2134132_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 372.0
YYD1_k127_2134132_6 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 316.0
YYD1_k127_2134132_7 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 297.0
YYD1_k127_2134132_8 Serine acetyltransferase, N-terminal K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001283 290.0
YYD1_k127_2134132_9 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000004569 144.0
YYD1_k127_2192581_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K00344,K00966,K01840,K03431,K15778,K16881 - 1.6.5.5,2.7.7.13,5.4.2.10,5.4.2.2,5.4.2.8 1.365e-275 882.0
YYD1_k127_2192581_1 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009795 409.0
YYD1_k127_2192581_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 377.0
YYD1_k127_2192581_3 PFAM Band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 322.0
YYD1_k127_2192581_4 SMART PUA domain containing protein K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 299.0
YYD1_k127_2192581_5 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000005518 234.0
YYD1_k127_2192581_6 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000001451 221.0
YYD1_k127_2192581_7 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000001803 188.0
YYD1_k127_2192581_8 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000985 180.0
YYD1_k127_2208303_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 346.0
YYD1_k127_2208303_1 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000001122 187.0
YYD1_k127_2208303_2 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K00404,K15862 GO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005506,GO:0005507,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008144,GO:0008150,GO:0008152,GO:0008324,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015975,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0016705,GO:0017144,GO:0019411,GO:0019637,GO:0019646,GO:0019693,GO:0019825,GO:0020037,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045154,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.9.3.1 0.0000001214 55.0
YYD1_k127_2271796_0 PFAM extracellular solute-binding protein, family 5 K02035,K13893 - - 2.291e-218 701.0
YYD1_k127_2271796_1 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 438.0
YYD1_k127_2271796_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 402.0
YYD1_k127_2271796_3 Belongs to the ABC transporter superfamily K02031,K02032,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 340.0
YYD1_k127_2271796_4 Anaphase-promoting complex, cyclosome, subunit 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 338.0
YYD1_k127_2271796_5 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.00001369 49.0
YYD1_k127_2273245_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 530.0
YYD1_k127_2273245_1 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 433.0
YYD1_k127_2273245_2 Histidine kinase K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005211 341.0
YYD1_k127_2273245_3 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000001724 141.0
YYD1_k127_2273245_4 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.0000000000000000001041 90.0
YYD1_k127_2273245_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000001295 61.0
YYD1_k127_2310660_0 PFAM Type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 561.0
YYD1_k127_2310660_1 Type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005501 469.0
YYD1_k127_2310660_10 general secretion pathway protein - - - 0.00007967 53.0
YYD1_k127_2310660_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 324.0
YYD1_k127_2310660_3 General secretion pathway protein F K02455,K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001409 278.0
YYD1_k127_2310660_4 Type II secretion system (T2SS), protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000005097 203.0
YYD1_k127_2310660_5 PFAM General secretion pathway protein K K02460 - - 0.000000000000000000000000000000002707 147.0
YYD1_k127_2310660_6 Type II secretion system (T2SS), protein J K02459 - - 0.00000000000000001632 94.0
YYD1_k127_2310660_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.00002976 46.0
YYD1_k127_2310660_9 General secretion pathway protein C K02452 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00003766 55.0
YYD1_k127_2321927_0 CBS domain containing protein K00974 - 2.7.7.72 3.191e-267 848.0
YYD1_k127_2321927_1 MutS domain I K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 6.584e-219 709.0
YYD1_k127_2321927_10 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001797 295.0
YYD1_k127_2321927_11 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001427 281.0
YYD1_k127_2321927_12 TIGRFAM Tyrosine recombinase XerD K03733,K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002982 279.0
YYD1_k127_2321927_13 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000925 266.0
YYD1_k127_2321927_14 Peptidase M50 - - - 0.000000000000000000000000000000000000000000000000000000000000001863 225.0
YYD1_k127_2321927_15 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000001492 219.0
YYD1_k127_2321927_16 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000003179 228.0
YYD1_k127_2321927_17 cytidylate kinase activity K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000001273 214.0
YYD1_k127_2321927_18 Bis-adenosyl-polyphosphate hydrolase, FHIT domain-containing K19710 - 2.7.7.53 0.000000000000000000000000000000000000000000003062 171.0
YYD1_k127_2321927_19 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000009517 174.0
YYD1_k127_2321927_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 571.0
YYD1_k127_2321927_20 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000003375 123.0
YYD1_k127_2321927_21 bacterial (prokaryotic) histone like domain K05788 - - 0.00000000000000000000000008481 121.0
YYD1_k127_2321927_22 TIGRFAM phosphodiesterase, MJ0936 family K07095 - - 0.000000000000000000000005464 111.0
YYD1_k127_2321927_3 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 599.0
YYD1_k127_2321927_4 amino acid-binding ACT domain protein K14170 - 4.2.1.51,5.4.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 446.0
YYD1_k127_2321927_5 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 422.0
YYD1_k127_2321927_6 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 426.0
YYD1_k127_2321927_7 PFAM aminoacyl-tRNA synthetase class Ib K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003055 409.0
YYD1_k127_2321927_8 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003762 394.0
YYD1_k127_2321927_9 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001716 290.0
YYD1_k127_2327004_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 370.0
YYD1_k127_2327004_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 334.0
YYD1_k127_2327004_2 Glucodextranase, domain N K01178 - 3.2.1.3 0.00000000000000000000000000000000000000000000000000000000000004165 220.0
YYD1_k127_2327004_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000001164 214.0
YYD1_k127_2327004_4 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.0000000000000000000000000000000000000005391 169.0
YYD1_k127_2327004_5 Yqey-like protein K09117 - - 0.0000000000000000000000000000001245 127.0
YYD1_k127_2327004_6 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000008712 103.0
YYD1_k127_2327004_7 PFAM Nitroreductase - - - 0.000000000000000001088 100.0
YYD1_k127_2327004_8 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000003718 65.0
YYD1_k127_2366353_0 Belongs to the DegT DnrJ EryC1 family K13017,K20429 - 2.6.1.33,2.6.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009059 312.0
YYD1_k127_2366353_1 Glycosyltransferase like family 2 K10012 - 2.4.2.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 295.0
YYD1_k127_2366353_2 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000001011 206.0
YYD1_k127_2366353_3 response regulator - - - 0.0000000000000000000000000000000000000000000002044 175.0
YYD1_k127_2366353_4 PFAM ATP-binding region, ATPase domain protein domain protein - - - 0.00000000000000000000000000000000000002232 157.0
YYD1_k127_2366353_5 methyltransferase activity - - - 0.0000000000000000000000000000000000003849 150.0
YYD1_k127_2366353_6 WxcM-like, C-terminal - - - 0.00000000000000000000000000009539 119.0
YYD1_k127_2456276_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 351.0
YYD1_k127_2456276_1 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003266 228.0
YYD1_k127_2456276_2 PFAM AMMECR1 domain protein K09141 - - 0.0000000000000000000000000000000000000000000000001738 183.0
YYD1_k127_2485584_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004348 494.0
YYD1_k127_2485584_1 peptidase M29 K19689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008291 332.0
YYD1_k127_2485584_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.00000000000000000000000000000000000000000000000000000000000000001301 238.0
YYD1_k127_2485584_3 N-terminal domain of unknown function (DUF4140) - - - 0.000000000000000000000000000000000000000000000000003279 206.0
YYD1_k127_2485584_4 Protein of unknown function (DUF2889) - - - 0.0004094 51.0
YYD1_k127_2490823_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 605.0
YYD1_k127_2490823_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 584.0
YYD1_k127_2490823_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 374.0
YYD1_k127_2490823_3 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 321.0
YYD1_k127_2490823_4 reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002348 280.0
YYD1_k127_2490823_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002673 271.0
YYD1_k127_2490823_6 PFAM CMP dCMP deaminase zinc-binding K01493 - 3.5.4.12 0.000000000000000000000000000000000000000000000000000000000000000006054 230.0
YYD1_k127_2490823_7 COG0698 Ribose 5-phosphate isomerase RpiB K01808 - 5.3.1.6 0.0000000000000000000000000000000000000003817 157.0
YYD1_k127_2490823_8 ATP cone domain K07738 - - 0.000000000000000000000000000005598 128.0
YYD1_k127_2490823_9 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.0000000000000000000000006435 106.0
YYD1_k127_2616446_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 578.0
YYD1_k127_2616446_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 429.0
YYD1_k127_2616446_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004621 418.0
YYD1_k127_2616446_3 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 345.0
YYD1_k127_2616446_4 Cell wall formation K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000002618 247.0
YYD1_k127_2616446_5 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000001703 214.0
YYD1_k127_2616446_6 Essential cell division protein K03589 - - 0.000000000000000000000000000000008603 138.0
YYD1_k127_2616446_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000007578 87.0
YYD1_k127_2620731_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 538.0
YYD1_k127_2620731_1 Histidine kinase A domain protein K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 306.0
YYD1_k127_2620731_2 Bacterial regulatory protein, Fis family K10126 - - 0.000000000000001506 82.0
YYD1_k127_2622200_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003036 254.0
YYD1_k127_2622200_1 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000005713 245.0
YYD1_k127_2622200_2 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000001673 139.0
YYD1_k127_2622200_3 NAD(P)H dehydrogenase (quinone) activity - - - 0.000000000000000001241 98.0
YYD1_k127_2623677_0 response regulator K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009013 488.0
YYD1_k127_2623677_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005293 455.0
YYD1_k127_2623677_2 PAS domain K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 477.0
YYD1_k127_2623677_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000004402 245.0
YYD1_k127_2623677_4 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000007447 197.0
YYD1_k127_2623677_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000001258 156.0
YYD1_k127_2623677_6 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000001672 139.0
YYD1_k127_2623677_7 KWG Leptospira - - - 0.000000000000000000000000000008832 128.0
YYD1_k127_2623677_8 Protein of unknown function (DUF2905) - - - 0.000000000000000000004151 94.0
YYD1_k127_2623677_9 Domain of unknown function (DUF4390) - - - 0.0000000000002265 78.0
YYD1_k127_2644821_0 Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007079 420.0
YYD1_k127_2644821_1 4Fe-4S dicluster domain - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005987 325.0
YYD1_k127_2644821_2 Cytochrome c3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 310.0
YYD1_k127_2644821_3 Class III cytochrome C family - - - 0.000000000000001701 86.0
YYD1_k127_2644821_5 formate dehydrogenase - - - 0.0000000006684 64.0
YYD1_k127_2645975_0 ATPase BadF BadG BcrA BcrD type - - - 2.569e-319 1006.0
YYD1_k127_2645975_1 Belongs to the RtcB family K14415 - 6.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008533 575.0
YYD1_k127_2645975_10 Zinc finger and BTB domain containing 8 opposite strand - GO:0000394,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010720,GO:0010975,GO:0010976,GO:0016070,GO:0022008,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048679,GO:0048680,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070570,GO:0070572,GO:0071704,GO:0072669,GO:0080134,GO:0080135,GO:0090304,GO:0120035,GO:1901360,GO:1903034,GO:1903036,GO:2000026 - 0.0000002962 58.0
YYD1_k127_2645975_12 TIGRFAM MJ0042 family finger-like protein - - - 0.00003943 55.0
YYD1_k127_2645975_2 Transglycosylase K05366,K21464 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 560.0
YYD1_k127_2645975_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 516.0
YYD1_k127_2645975_4 4 iron, 4 sulfur cluster binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 402.0
YYD1_k127_2645975_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000002293 213.0
YYD1_k127_2645975_6 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000005708 176.0
YYD1_k127_2645975_7 Nodulation protein S (NodS) - - - 0.00000000000000000000000000000000000001588 153.0
YYD1_k127_2645975_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 - - 0.00000000000005207 78.0
YYD1_k127_2658163_0 Prismane/CO dehydrogenase family K00198 - 1.2.7.4 5.316e-220 699.0
YYD1_k127_2658163_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000004931 245.0
YYD1_k127_2658163_2 Anion-transporting ATPase K07321 - - 0.00000000000000000000000000000000000000000000000003904 201.0
YYD1_k127_2658163_3 4Fe-4S dicluster domain K00196 - - 0.00000000000000000000000000000000000000000007248 173.0
YYD1_k127_2658163_5 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000003348 147.0
YYD1_k127_2658163_6 PFAM cytochrome c class III - - - 0.00000009213 59.0
YYD1_k127_2658163_7 PA14 domain - - - 0.000003535 60.0
YYD1_k127_2662580_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671,K22345 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9,4.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009922 393.0
YYD1_k127_2662580_1 GGDEF domain' - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 351.0
YYD1_k127_2662580_2 Phospholipid N-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000004823 230.0
YYD1_k127_2662580_3 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000000000000001956 116.0
YYD1_k127_2671281_0 PFAM natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 579.0
YYD1_k127_2671281_1 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 387.0
YYD1_k127_2671281_2 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 328.0
YYD1_k127_2671281_3 cytochrome C family protein - - - 0.000000000000000000000000000000000000002211 154.0
YYD1_k127_2671281_4 Glucodextranase, domain N K01178 - 3.2.1.3 0.000000000005079 68.0
YYD1_k127_2690619_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1502.0
YYD1_k127_2690619_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 667.0
YYD1_k127_2690619_2 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000002213 151.0
YYD1_k127_2706723_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 1.071e-202 658.0
YYD1_k127_2706723_1 anaerobic respiration - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 300.0
YYD1_k127_2706723_2 PFAM iron dependent repressor K03709 - - 0.00000000000000000000000000000000000000000000000000000004872 205.0
YYD1_k127_2706723_3 MotA TolQ ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000006553 177.0
YYD1_k127_2706723_4 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000008253 145.0
YYD1_k127_2706723_5 OST-HTH/LOTUS domain - - - 0.00000000000000000000000001065 122.0
YYD1_k127_2706723_6 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.00000000000000000004755 98.0
YYD1_k127_2706723_8 peptidyl-tyrosine sulfation - - - 0.00003084 56.0
YYD1_k127_2709081_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003339 282.0
YYD1_k127_2709081_1 Glycine cleavage H-protein - - - 0.000000000000000000000000000000000000000000000000063 185.0
YYD1_k127_2709081_2 Domain of unknown function (DUF4382) - - - 0.00001271 50.0
YYD1_k127_2777769_0 PFAM 4-hydroxyphenylacetate 3-hydroxylase N terminal K14534 - 4.2.1.120,5.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003109 533.0
YYD1_k127_2777769_1 Periplasmic binding protein domain K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 482.0
YYD1_k127_2777769_2 COGs COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009344 469.0
YYD1_k127_2777769_3 Transketolase, pyrimidine binding domain K00162,K00167 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007039 448.0
YYD1_k127_2777769_4 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009854 348.0
YYD1_k127_2777769_5 L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004753 341.0
YYD1_k127_2777769_6 PFAM AMP-dependent synthetase and ligase K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 346.0
YYD1_k127_2777769_7 17 kDa outer membrane surface antigen - - - 0.0000000000000000000000000000000000000000000000000000000008098 204.0
YYD1_k127_2777769_8 Calcineurin-like phosphoesterase K03269 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0019897,GO:0019898,GO:0030145,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.54 0.0000000000000000000000000000000000000003178 159.0
YYD1_k127_2777769_9 Response regulator receiver K07696 - - 0.00000001313 57.0
YYD1_k127_2786713_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000005771 258.0
YYD1_k127_2786713_1 alginic acid biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000001338 225.0
YYD1_k127_2786713_2 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000000000000001873 150.0
YYD1_k127_2786713_3 alginic acid biosynthetic process - - - 0.00000000000000000000000000001194 136.0
YYD1_k127_2786713_4 ResB-like family - - - 0.000000000000000003041 99.0
YYD1_k127_2786713_5 - - - - 0.00000000000005104 86.0
YYD1_k127_2817065_0 Proline dehydrogenase K13821 - 1.2.1.88,1.5.5.2 3.554e-254 815.0
YYD1_k127_2817065_1 Domains HisKA, HATPase_c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003878 253.0
YYD1_k127_2817065_2 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.000000000000000000000000000000000000000000000000008436 186.0
YYD1_k127_2817065_3 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000001341 116.0
YYD1_k127_2867496_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000000009362 206.0
YYD1_k127_2867496_1 energy transducer activity K03832 - - 0.00000009579 63.0
YYD1_k127_2867496_2 deoxyhypusine monooxygenase activity - - - 0.000002842 59.0
YYD1_k127_2867496_3 PFAM TPR repeat-containing protein - - - 0.0004348 51.0
YYD1_k127_2900821_0 unfolded protein binding K04083 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0031647,GO:0036506,GO:0042026,GO:0042802,GO:0043167,GO:0043169,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0065007,GO:0065008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 337.0
YYD1_k127_2900821_1 SCO1/SenC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000925 237.0
YYD1_k127_2900821_2 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000001103 173.0
YYD1_k127_2900821_3 AhpC/TSA family K03564 - 1.11.1.15 0.00000000000000000000000115 105.0
YYD1_k127_2900821_4 peroxiredoxin activity K03564 - 1.11.1.15 0.000005463 53.0
YYD1_k127_2927019_0 PFAM Polysulphide reductase, NrfD K00185 - - 5.21e-222 694.0
YYD1_k127_2927019_1 PFAM 4Fe-4S K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 517.0
YYD1_k127_2927019_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007832 244.0
YYD1_k127_2927019_3 GTP-binding protein TypA K06207 - - 0.000000000000000000000005053 102.0
YYD1_k127_2927019_4 Rubrerythrin - - - 0.00000003838 61.0
YYD1_k127_2976503_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 2.848e-206 649.0
YYD1_k127_2976503_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 476.0
YYD1_k127_2976503_2 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 461.0
YYD1_k127_2976503_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 407.0
YYD1_k127_2976503_4 PFAM amino acid-binding ACT domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000004141 213.0
YYD1_k127_2976503_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000001094 201.0
YYD1_k127_298997_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1311.0
YYD1_k127_298997_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.568e-248 799.0
YYD1_k127_298997_10 metal cluster binding K06940,K18475 - - 0.000000000000000000000000000002142 128.0
YYD1_k127_298997_11 Spore Coat Protein U domain - - - 0.0000000000000000000000000001321 120.0
YYD1_k127_298997_12 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000265 95.0
YYD1_k127_298997_13 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.00000000000003408 76.0
YYD1_k127_298997_14 SurA N-terminal domain K03771 - 5.2.1.8 0.0000000000001985 84.0
YYD1_k127_298997_15 Spore Coat Protein U domain - - - 0.0000000000003779 80.0
YYD1_k127_298997_16 Spore Coat Protein U domain - - - 0.000002355 56.0
YYD1_k127_298997_17 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000126 58.0
YYD1_k127_298997_2 Outer membrane usher protein K07347 - - 1.829e-196 640.0
YYD1_k127_298997_3 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 552.0
YYD1_k127_298997_4 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 319.0
YYD1_k127_298997_5 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004869 258.0
YYD1_k127_298997_6 pilus organization K07346 - - 0.00000000000000000000000000000000000000000000000000000000000000000879 233.0
YYD1_k127_298997_7 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000002384 206.0
YYD1_k127_298997_8 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000003136 193.0
YYD1_k127_298997_9 domain protein K20276 - - 0.0000000000000000000000000000000000000000000008382 180.0
YYD1_k127_3003486_0 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 419.0
YYD1_k127_3003486_1 PFAM Alanine dehydrogenase PNT, C-terminal domain K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 388.0
YYD1_k127_3003486_2 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009758 348.0
YYD1_k127_3003486_3 NAD(P) transhydrogenase beta subunit K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002371 291.0
YYD1_k127_3003486_4 NADP transhydrogenase K00324 - 1.6.1.2 0.00000000000000000000000004306 123.0
YYD1_k127_3013602_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007829 385.0
YYD1_k127_3013602_1 OmpA family K02557 - - 0.00001949 49.0
YYD1_k127_3055484_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1009.0
YYD1_k127_3055484_1 PFAM 2-nitropropane dioxygenase NPD K00459,K02371 - 1.13.12.16,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009714 439.0
YYD1_k127_3055484_10 glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000001825 130.0
YYD1_k127_3055484_11 lyase activity - - - 0.0000000000000000005471 102.0
YYD1_k127_3055484_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 326.0
YYD1_k127_3055484_3 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009213 311.0
YYD1_k127_3055484_4 Cytochrome P460 - - - 0.00000000000000000000000000000000000000000000000000002843 207.0
YYD1_k127_3055484_5 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000001145 190.0
YYD1_k127_3055484_6 - - - - 0.0000000000000000000000000000000000000000000002044 175.0
YYD1_k127_3055484_7 cyclic diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000002942 186.0
YYD1_k127_3055484_8 Domain of unknown function (DUF296) - - - 0.00000000000000000000000000000002468 138.0
YYD1_k127_3055484_9 Metal-dependent hydrolases of the beta-lactamase superfamily I K00784 - 3.1.26.11 0.00000000000000000000000000000008008 136.0
YYD1_k127_313191_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 535.0
YYD1_k127_313191_1 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 289.0
YYD1_k127_313191_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002132 276.0
YYD1_k127_313191_3 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001998 259.0
YYD1_k127_313191_4 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000001427 210.0
YYD1_k127_313191_5 Membrane - - - 0.000000000000000000000000000002522 126.0
YYD1_k127_3176113_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 479.0
YYD1_k127_3176113_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 394.0
YYD1_k127_3176113_2 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 353.0
YYD1_k127_3176113_3 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03753,K13818 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000000000004794 261.0
YYD1_k127_3176113_4 PFAM Nucleoside recognition - - - 0.00000000000000000000000003137 121.0
YYD1_k127_3176113_5 Nucleoside recognition - - - 0.000000000000000000000004521 109.0
YYD1_k127_3176113_6 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000318 100.0
YYD1_k127_3177510_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533 - 3.6.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006926 493.0
YYD1_k127_3177510_1 Neisseria PilC beta-propeller domain K02674 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009854 463.0
YYD1_k127_3177510_2 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000000000000000000000000000000000000000734 219.0
YYD1_k127_3177510_3 - - - - 0.000000000000000005244 93.0
YYD1_k127_3177510_5 Pfam:N_methyl_2 K02671 - - 0.000000000006848 71.0
YYD1_k127_3177510_6 Cytochrome oxidase maturation protein - - - 0.0000000000284 66.0
YYD1_k127_3205021_0 GTP-binding protein LepA C-terminus K03596 - - 2.579e-271 846.0
YYD1_k127_3205021_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 528.0
YYD1_k127_3205021_10 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000001128 204.0
YYD1_k127_3205021_11 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000003598 121.0
YYD1_k127_3205021_2 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008337 371.0
YYD1_k127_3205021_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008426 338.0
YYD1_k127_3205021_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000007634 239.0
YYD1_k127_3205021_5 Tryptophan synthase alpha chain K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000001052 233.0
YYD1_k127_3205021_6 Belongs to the purine pyrimidine phosphoribosyltransferase family. PyrR subfamily K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000007804 222.0
YYD1_k127_3205021_7 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000001388 239.0
YYD1_k127_3205021_8 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000004647 210.0
YYD1_k127_3205021_9 nitrous-oxide reductase activity K00376 - 1.7.2.4 0.00000000000000000000000000000000000000000000000001055 193.0
YYD1_k127_3211670_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 601.0
YYD1_k127_3211670_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 481.0
YYD1_k127_3211670_2 Domain of unknown function (DUF1844) - - - 0.000000000005162 72.0
YYD1_k127_3221483_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 2.639e-195 642.0
YYD1_k127_3221483_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 505.0
YYD1_k127_3221483_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008785 449.0
YYD1_k127_3221483_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 344.0
YYD1_k127_3221483_4 PFAM Cytochrome c assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000473 235.0
YYD1_k127_3221483_5 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.0000000000000000000000000000000000000000671 163.0
YYD1_k127_3221483_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000009038 154.0
YYD1_k127_3221483_7 RDD family - - - 0.0000000000002407 79.0
YYD1_k127_3222521_0 General secretory system II, protein E domain protein K02652 - - 2.864e-235 739.0
YYD1_k127_3222521_1 SMART Elongator protein 3 MiaB NifB - - - 1.495e-210 682.0
YYD1_k127_3222521_10 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000103 189.0
YYD1_k127_3222521_11 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000009302 181.0
YYD1_k127_3222521_12 protein histidine kinase activity K02668 - 2.7.13.3 0.00000000000000000000007059 115.0
YYD1_k127_3222521_13 sigma factor antagonist activity K04757 - 2.7.11.1 0.00000000000000001511 98.0
YYD1_k127_3222521_14 antisigma factor binding - - - 0.0000000000000008313 82.0
YYD1_k127_3222521_2 twitching motility protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007111 574.0
YYD1_k127_3222521_3 TIGRFAM ribonuclease, Rne Rng family K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005169 576.0
YYD1_k127_3222521_4 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 512.0
YYD1_k127_3222521_5 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004757 512.0
YYD1_k127_3222521_6 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006489 421.0
YYD1_k127_3222521_7 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002286 280.0
YYD1_k127_3222521_8 regulatory protein GntR HTH - - - 0.000000000000000000000000000000000000000000000000000000000000000000002502 241.0
YYD1_k127_3222521_9 metal-dependent phosphohydrolase HD region - - - 0.000000000000000000000000000000000000000000000000001809 199.0
YYD1_k127_322549_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1198.0
YYD1_k127_322549_1 FAD-dependent dehydrogenases - - - 5.82e-207 652.0
YYD1_k127_322549_10 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001048 261.0
YYD1_k127_322549_11 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001327 265.0
YYD1_k127_322549_12 Belongs to the UPF0173 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002415 244.0
YYD1_k127_322549_13 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000007034 216.0
YYD1_k127_322549_14 His Kinase A (phosphoacceptor) domain K02668,K07708,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000001756 199.0
YYD1_k127_322549_15 IMP dehydrogenase activity K04767 - - 0.00000000000000000000000000000000000000000000007952 177.0
YYD1_k127_322549_16 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000001949 177.0
YYD1_k127_322549_17 CoA binding domain K06929 - - 0.000000000000000000000000000000000000002466 150.0
YYD1_k127_322549_18 GHMP kinases N terminal domain K07031 - 2.7.1.168 0.000000000000000000000000000000000000004599 160.0
YYD1_k127_322549_19 PFAM CBS domain containing protein K04767 - - 0.00000000000000000000000000000000000004633 151.0
YYD1_k127_322549_2 RHS protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 569.0
YYD1_k127_322549_20 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000001567 139.0
YYD1_k127_322549_21 Nitroreductase family - - - 0.0000000000000000000000000000000001046 151.0
YYD1_k127_322549_22 WD40 repeat-like protein - - - 0.0000000000000000000000000000000001139 151.0
YYD1_k127_322549_23 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000002724 141.0
YYD1_k127_322549_24 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.000000000000000000000000000001454 127.0
YYD1_k127_322549_25 PFAM nitrogen-fixing NifU domain protein - - - 0.0000000000000000000000000002722 114.0
YYD1_k127_322549_26 PFAM CBS domain containing protein K06189 - - 0.0000000000000000000000001882 121.0
YYD1_k127_322549_27 RHS Repeat - - - 0.0000000000000000000002082 98.0
YYD1_k127_322549_28 nucleic acid binding K01174 - 3.1.31.1 0.00000000000000000002319 108.0
YYD1_k127_322549_29 Ferredoxin - GO:0003674,GO:0003824,GO:0005488,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114 - 0.00000000000000003821 83.0
YYD1_k127_322549_3 Rod shape-determining protein K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 506.0
YYD1_k127_322549_30 response regulator K07712 - - 0.0000000000000001959 81.0
YYD1_k127_322549_31 Cytochrome c554 and c-prime - - - 0.0000000005655 69.0
YYD1_k127_322549_32 Lysin motif - - - 0.0000007422 63.0
YYD1_k127_322549_33 Thioredoxin-like - - - 0.0004463 51.0
YYD1_k127_322549_4 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 499.0
YYD1_k127_322549_5 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006837 473.0
YYD1_k127_322549_6 PFAM Alcohol dehydrogenase K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006669 436.0
YYD1_k127_322549_7 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005895 349.0
YYD1_k127_322549_8 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005674 340.0
YYD1_k127_322549_9 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 316.0
YYD1_k127_3235044_0 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002892 331.0
YYD1_k127_3235044_1 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000003131 188.0
YYD1_k127_3235044_2 Uncharacterised ArCR, COG2043 - - - 0.0000000000000000000000000005665 113.0
YYD1_k127_3235044_3 cAMP biosynthetic process - - - 0.0000000000001618 83.0
YYD1_k127_3327627_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 517.0
YYD1_k127_3327627_1 Histidine kinase K10715,K20974 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 490.0
YYD1_k127_3327627_2 PFAM Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000001673 233.0
YYD1_k127_3327627_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000001799 151.0
YYD1_k127_3327627_4 Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction K01710 GO:0000271,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006139,GO:0006629,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008460,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009225,GO:0009226,GO:0009987,GO:0016051,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045226,GO:0046379,GO:0046483,GO:0048037,GO:0050662,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576,GO:1903509 4.2.1.46 0.000007517 48.0
YYD1_k127_334400_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0 1087.0
YYD1_k127_334400_1 hydrogenase large subunit K06281 - 1.12.99.6 0.000000000000000000000000000000000000000000000000003827 184.0
YYD1_k127_334400_2 respiratory electron transport chain K03620 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000006452 112.0
YYD1_k127_334400_3 Fic/DOC family - - - 0.000000000000000000000005633 107.0
YYD1_k127_3374298_0 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 314.0
YYD1_k127_3374298_1 regulation of response to stimulus - - - 0.0000000001013 75.0
YYD1_k127_338665_0 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 444.0
YYD1_k127_338665_1 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 458.0
YYD1_k127_338665_2 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.00000000000000000000000000000000000000000000000000000004952 209.0
YYD1_k127_338665_3 - - - - 0.00000000000001153 79.0
YYD1_k127_340682_0 AIR synthase related protein, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 478.0
YYD1_k127_340682_1 PFAM Phosphomethylpyrimidine kinase type-1 K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003654 282.0
YYD1_k127_340682_2 domain protein - - - 0.000000000000000000000000000000000000000000000005022 195.0
YYD1_k127_340682_3 RES - - - 0.000000000000000000000000000000000000000000009915 175.0
YYD1_k127_340682_4 Protein of unknown function (DUF2384) - - - 0.00000000000000000005346 95.0
YYD1_k127_340682_5 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000004762 93.0
YYD1_k127_340682_6 competence protein COMEC - - - 0.0000000000000351 79.0
YYD1_k127_3445987_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000002718 256.0
YYD1_k127_3445987_1 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000001429 192.0
YYD1_k127_3445987_2 PFAM glutaredoxin K18917 - 1.20.4.3 0.000000000000000003708 88.0
YYD1_k127_3445987_3 Fibronectin-binding A domain protein - - - 0.0000000000003817 71.0
YYD1_k127_3445987_4 Putative regulatory protein - - - 0.000000007515 61.0
YYD1_k127_3446607_0 TIGRFAM cysteine desulfurase family protein K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 394.0
YYD1_k127_3446607_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K13566 - 3.5.1.3 0.00000000000000000000000000000000000000000000000000000000000003489 223.0
YYD1_k127_3446607_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000004409 174.0
YYD1_k127_3446607_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000001058 77.0
YYD1_k127_3446607_4 Lysin motif - - - 0.0000000001248 69.0
YYD1_k127_3480279_0 Belongs to the GSP D family K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002031 274.0
YYD1_k127_3480279_1 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.000000000000000000000000000000000000000000002212 175.0
YYD1_k127_3480279_2 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000006331 144.0
YYD1_k127_3480279_3 PFAM TadE family protein - - - 0.0000003937 58.0
YYD1_k127_3480603_0 fructose-bisphosphate aldolase activity K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007916 398.0
YYD1_k127_3480603_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002767 268.0
YYD1_k127_3480603_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000522 154.0
YYD1_k127_3480603_3 Response regulator receiver - - - 0.000000000000004626 85.0
YYD1_k127_3480603_4 Outer membrane efflux protein - - - 0.00000001734 68.0
YYD1_k127_3486516_0 Cytochrome c K00413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001524 273.0
YYD1_k127_3486516_1 Pfam Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001879 267.0
YYD1_k127_3486516_2 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000009941 161.0
YYD1_k127_3486516_3 Protein of unknown function (DUF3341) - - - 0.000000000000000000000346 106.0
YYD1_k127_3486516_4 Polysulphide reductase, NrfD - - - 0.0000000004252 62.0
YYD1_k127_3488758_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0 1469.0
YYD1_k127_3488758_1 4Fe-4S dicluster domain K00124 GO:0005575,GO:0005623,GO:0009326,GO:0032991,GO:0042597,GO:0044464,GO:1902494 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 405.0
YYD1_k127_3488758_2 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000066 334.0
YYD1_k127_3488758_3 Prokaryotic cytochrome b561 K00127 - - 0.0000004144 53.0
YYD1_k127_3488915_0 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007991 415.0
YYD1_k127_3488915_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000008037 249.0
YYD1_k127_3488915_2 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000004866 225.0
YYD1_k127_3488915_3 SMART Sel1 domain protein repeat-containing protein K07126 - - 0.00000000000000000000000000000000000000000000000000000000000008437 234.0
YYD1_k127_3488915_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000003845 184.0
YYD1_k127_3488915_5 adenylylsulfate kinase activity K00860,K00955 - 2.7.1.25,2.7.7.4 0.0000000000000000000000000000000000000006579 154.0
YYD1_k127_3488915_6 cell redox homeostasis - - - 0.000000000000000000000000000000000255 137.0
YYD1_k127_3488915_7 iron ion homeostasis - - - 0.0000000000000000000000000000000004742 150.0
YYD1_k127_3488915_8 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.00000000000000000000001637 116.0
YYD1_k127_3490552_0 TIGRFAM phosphate binding protein K02040 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 418.0
YYD1_k127_3490552_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 378.0
YYD1_k127_3490552_2 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005793 351.0
YYD1_k127_3490552_3 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000185 303.0
YYD1_k127_3490552_4 Transcriptional regulatory protein, C terminal K07658 - - 0.000000000000000000000000000000000000000000000000000000000000000001297 233.0
YYD1_k127_3490552_5 PFAM Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000002488 156.0
YYD1_k127_3523917_0 PFAM thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 383.0
YYD1_k127_3523917_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001034 253.0
YYD1_k127_3523917_2 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000004897 233.0
YYD1_k127_3523917_3 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000085 207.0
YYD1_k127_353441_0 Heat shock 70 kDa protein K04043 - - 1.586e-282 880.0
YYD1_k127_353441_1 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000001058 217.0
YYD1_k127_353441_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000003413 180.0
YYD1_k127_353441_3 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 - - 0.000000000000000000000005144 104.0
YYD1_k127_353441_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07666 - - 0.00000001765 61.0
YYD1_k127_3538428_0 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 466.0
YYD1_k127_3538428_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 379.0
YYD1_k127_3538428_2 PBP superfamily domain K05772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 350.0
YYD1_k127_3538428_3 regulatory protein LysR K02019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006514 325.0
YYD1_k127_3538428_4 Binding-protein-dependent transport system inner membrane component K05773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003048 278.0
YYD1_k127_3538428_5 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002862 271.0
YYD1_k127_3538428_6 ABC transporter K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000001321 214.0
YYD1_k127_3538428_7 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000007359 164.0
YYD1_k127_355837_0 PFAM Xanthine uracil vitamin C permease K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 602.0
YYD1_k127_355837_1 (belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family) K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 463.0
YYD1_k127_355837_2 GYD domain - - - 0.00000000000000000000000000000000000004597 145.0
YYD1_k127_3576449_0 Aminotransferase K00812,K22457 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769,GO:0047297 2.6.1.1,2.6.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 509.0
YYD1_k127_3576449_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000001766 196.0
YYD1_k127_3576449_2 - - - - 0.00000000000000000000000000000000003135 144.0
YYD1_k127_3576449_3 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000001506 135.0
YYD1_k127_3576449_4 histidine kinase A domain protein - - - 0.000000000000000027 89.0
YYD1_k127_3576449_5 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000002166 73.0
YYD1_k127_3614241_0 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 363.0
YYD1_k127_3614241_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008762 320.0
YYD1_k127_3614241_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000008367 242.0
YYD1_k127_3614241_3 cellulase activity - - - 0.0000000000000000000000000000002576 139.0
YYD1_k127_3614241_4 sister chromatid segregation - - - 0.000001328 51.0
YYD1_k127_3617044_0 Thiamine biosynthesis protein (ThiI) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 347.0
YYD1_k127_3617044_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 311.0
YYD1_k127_3617044_2 ThiF family K03148,K21147 - 2.7.7.73,2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000004015 267.0
YYD1_k127_3617044_3 PFAM asparagine synthase K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004664 269.0
YYD1_k127_3634270_0 Type II IV secretion system protein K02454,K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 526.0
YYD1_k127_3634270_1 AAA domain K02450,K12283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001755 258.0
YYD1_k127_3634270_10 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.000004869 49.0
YYD1_k127_3634270_11 general secretion pathway protein G K02456 - - 0.00009358 55.0
YYD1_k127_3634270_2 PFAM Bacterial type II secretion system protein F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000003626 264.0
YYD1_k127_3634270_3 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000002361 255.0
YYD1_k127_3634270_4 type II and III secretion system protein K12282 - - 0.000000000000000000000000000000000000000000000000000000000000214 233.0
YYD1_k127_3634270_5 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000003151 205.0
YYD1_k127_3634270_6 ATPase activity K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000001472 202.0
YYD1_k127_3634270_7 TonB-dependent Receptor Plug Domain K16092 - - 0.0000000000000000000000000004371 132.0
YYD1_k127_3634270_8 general secretion pathway protein G K02456 - - 0.0000000007721 68.0
YYD1_k127_3634270_9 TPR repeat - - - 0.000001199 62.0
YYD1_k127_366819_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 578.0
YYD1_k127_366819_1 Belongs to the MEMO1 family K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000122 271.0
YYD1_k127_3675033_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008737 499.0
YYD1_k127_3675033_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 436.0
YYD1_k127_3675033_2 - - - - 0.000000000004845 76.0
YYD1_k127_3695745_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 425.0
YYD1_k127_3695745_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 327.0
YYD1_k127_3695745_2 ATP-binding region, ATPase domain protein domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005059 254.0
YYD1_k127_3695745_3 Beta-lactamase - - - 0.000000002249 68.0
YYD1_k127_3695745_4 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000003636 59.0
YYD1_k127_3695745_5 integral membrane protein - - - 0.000006472 55.0
YYD1_k127_3714247_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 587.0
YYD1_k127_3714247_1 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 413.0
YYD1_k127_3714247_2 PCRF K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 398.0
YYD1_k127_3714247_3 Metal-dependent phosphohydrolase K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 329.0
YYD1_k127_3714247_4 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 339.0
YYD1_k127_3714247_5 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007416 256.0
YYD1_k127_3714247_6 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000003075 86.0
YYD1_k127_3765813_0 malic protein domain protein K00027,K00029 - 1.1.1.38,1.1.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 581.0
YYD1_k127_3765813_1 inositol-3-phosphate synthase activity K01858 GO:0003674,GO:0003824,GO:0004512,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009405,GO:0009987,GO:0010125,GO:0010126,GO:0016137,GO:0016138,GO:0016853,GO:0016872,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044272,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1901657,GO:1901659 5.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008071 483.0
YYD1_k127_3765813_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000003092 229.0
YYD1_k127_3765813_3 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000391 152.0
YYD1_k127_3765813_4 Protein involved in cellulose biosynthesis - - - 0.0000000000000000000000000001231 134.0
YYD1_k127_3765813_5 denitrification pathway - - - 0.0000000000000000000000002755 117.0
YYD1_k127_3765813_6 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.00000000005596 66.0
YYD1_k127_3772271_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 1.022e-195 644.0
YYD1_k127_3772271_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655 516.0
YYD1_k127_3772271_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 323.0
YYD1_k127_3772271_3 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005868 314.0
YYD1_k127_3772271_4 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 318.0
YYD1_k127_3772271_5 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 293.0
YYD1_k127_3772271_6 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000002347 260.0
YYD1_k127_3772271_7 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000001122 184.0
YYD1_k127_3772271_8 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000004731 202.0
YYD1_k127_3772271_9 Outer membrane protein (OmpH-like) K06142 - - 0.00000000007689 69.0
YYD1_k127_3803568_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1298.0
YYD1_k127_3803568_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 311.0
YYD1_k127_3803568_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000004671 253.0
YYD1_k127_3803568_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000003244 194.0
YYD1_k127_3803568_4 acyl-CoA dehydrogenase - - - 0.00000000000000000000638 110.0
YYD1_k127_3803962_0 Glycosyltransferase family 20 K00697,K13057,K20436 - 2.4.1.15,2.4.1.245,2.4.1.347,2.5.1.135 0.0 1076.0
YYD1_k127_3803962_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 7.806e-219 694.0
YYD1_k127_3803962_2 Nucleotidyl transferase K04042,K11528 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 412.0
YYD1_k127_3803962_3 Protein of unknown function (DUF3047) - - - 0.000000000000000000000000000000000000000000000000000000000000003956 237.0
YYD1_k127_3803962_4 trehalose biosynthetic process K01087 - 3.1.3.12 0.0000000000000000000000000000000000000000000006337 177.0
YYD1_k127_3803962_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000000000000000000000002961 150.0
YYD1_k127_3803962_6 MlaC protein K07323 - - 0.00000000000000000000000000005581 119.0
YYD1_k127_3803962_7 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000121 110.0
YYD1_k127_3803962_8 TIGRFAM transcriptional regulator, AbrB family - - - 0.0000000000000002486 81.0
YYD1_k127_3803962_9 domain, Protein - - - 0.000000000000003831 83.0
YYD1_k127_3811090_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 1.774e-274 866.0
YYD1_k127_3811090_1 polyribonucleotide nucleotidyltransferase activity K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 3.907e-239 761.0
YYD1_k127_3811090_10 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 298.0
YYD1_k127_3811090_11 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000943 267.0
YYD1_k127_3811090_12 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000008641 256.0
YYD1_k127_3811090_13 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000002753 217.0
YYD1_k127_3811090_14 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000003521 218.0
YYD1_k127_3811090_15 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.0000000000000000000000000000000000000000000000002169 183.0
YYD1_k127_3811090_16 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.000000000000000000000000000000000000000000238 171.0
YYD1_k127_3811090_17 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000000000000000001303 151.0
YYD1_k127_3811090_18 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000002537 130.0
YYD1_k127_3811090_19 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000000002703 125.0
YYD1_k127_3811090_2 Translation-initiation factor 2 K02519 - - 2.861e-230 741.0
YYD1_k127_3811090_20 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000003628 104.0
YYD1_k127_3811090_21 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000003778 96.0
YYD1_k127_3811090_22 - - - - 0.00000000000000005396 90.0
YYD1_k127_3811090_23 Protein of unknown function (DUF503) K09764 - - 0.000000000000003498 79.0
YYD1_k127_3811090_24 Protein of unknown function (DUF448) K07742 - - 0.00000002956 61.0
YYD1_k127_3811090_3 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004838 640.0
YYD1_k127_3811090_4 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007941 583.0
YYD1_k127_3811090_5 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491 432.0
YYD1_k127_3811090_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648,K18003 - 2.3.1.180,2.3.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 413.0
YYD1_k127_3811090_7 PFAM peptidase M16 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 369.0
YYD1_k127_3811090_8 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 359.0
YYD1_k127_3811090_9 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008072 304.0
YYD1_k127_3825636_0 CoA binding domain K01905,K22224 - 6.2.1.13 1.177e-195 632.0
YYD1_k127_3825636_1 Belongs to the AlaDH PNT family K00259 GO:0000286,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009987,GO:0016054,GO:0016491,GO:0016638,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.1.1 0.00000000000000000000000000000000000000002181 176.0
YYD1_k127_3825636_2 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000002314 104.0
YYD1_k127_3825636_3 Alcohol dehydrogenase GroES-like domain K14446 - 1.3.1.85 0.000000000000000000002938 102.0
YYD1_k127_3861690_0 radical SAM domain protein K07011,K22227 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002983 422.0
YYD1_k127_3861690_1 3-oxoacyl-[acyl-carrier-protein] synthase activity K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 417.0
YYD1_k127_3861690_2 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 421.0
YYD1_k127_3861690_3 Domain of unknown function (DUF3473) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 389.0
YYD1_k127_3861690_4 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000998 374.0
YYD1_k127_3861690_5 3-oxoacyl-[acyl-carrier-protein] synthase activity K05551,K09458,K14667 - 2.3.1.179,2.3.1.235,2.3.1.260 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 323.0
YYD1_k127_3861690_7 3-oxoacyl-[acyl-carrier-protein] synthase activity K09458 - 2.3.1.179 0.000000000000000000000000000000003888 141.0
YYD1_k127_3879423_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 394.0
YYD1_k127_3879423_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 350.0
YYD1_k127_3879423_10 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000004265 102.0
YYD1_k127_3879423_11 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.00000000000000000128 93.0
YYD1_k127_3879423_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 345.0
YYD1_k127_3879423_3 TIGRFAM phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000147 259.0
YYD1_k127_3879423_4 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000006383 242.0
YYD1_k127_3879423_5 Imidazoleglycerol-phosphate dehydratase K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000002606 227.0
YYD1_k127_3879423_6 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000006645 205.0
YYD1_k127_3879423_7 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000001487 148.0
YYD1_k127_3879423_8 PFAM Histidine triad (HIT) protein K02503 - - 0.0000000000000000000000000000000000007437 148.0
YYD1_k127_3879423_9 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0008150,GO:0040007 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000001919 142.0
YYD1_k127_3893760_0 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 367.0
YYD1_k127_3893760_1 NAD(P)H-binding K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003973 282.0
YYD1_k127_3893760_2 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006434 251.0
YYD1_k127_3893760_3 - - - - 0.00000000000000000000000000000000000001599 149.0
YYD1_k127_3893760_4 prohibitin homologues - - - 0.0000000000000000000000001023 111.0
YYD1_k127_3893760_5 - - - - 0.000000001873 69.0
YYD1_k127_3937965_0 - - - - 0.00000000000001751 82.0
YYD1_k127_3937965_1 - - - - 0.000000005132 68.0
YYD1_k127_3937965_2 saccharopine dehydrogenase activity - - - 0.00007612 53.0
YYD1_k127_3963169_0 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004037 534.0
YYD1_k127_3963169_1 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000004293 156.0
YYD1_k127_3981213_0 nitric oxide reductase activity K22405 - 1.6.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 582.0
YYD1_k127_3981213_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004885 516.0
YYD1_k127_3981213_2 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 453.0
YYD1_k127_3981213_3 Protein of unknown function DUF47 K02039,K07220 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000000000000003451 209.0
YYD1_k127_3981213_4 ATP corrinoid adenosyltransferase K19221 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000001918 202.0
YYD1_k127_3981213_5 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000001025 152.0
YYD1_k127_3981213_6 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.00000000000000000000000000000001163 140.0
YYD1_k127_3981213_7 regulation of single-species biofilm formation K02342,K03763,K13573 - 2.7.7.7 0.00000000000000000000000000311 118.0
YYD1_k127_3981213_8 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.0000000000000000000000002189 105.0
YYD1_k127_3981213_9 Rubrerythrin - - - 0.00000000000003154 72.0
YYD1_k127_40196_0 elongation factor SelB, winged helix K03833 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 492.0
YYD1_k127_40196_1 Domain of unknown function (DUF4118) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004575 275.0
YYD1_k127_40196_2 PFAM Protein-tyrosine phosphatase, low molecular weight K03741 - 1.20.4.1 0.0000000000000000000000000000000000000000000004922 171.0
YYD1_k127_40196_3 Smr domain - - - 0.0000000000000000000000006305 119.0
YYD1_k127_40196_4 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000001937 92.0
YYD1_k127_40196_5 membrane protein (homolog of Drosophila rhomboid) - - - 0.000000000000001002 90.0
YYD1_k127_40196_6 methyltransferase activity - - - 0.00000000000009228 78.0
YYD1_k127_403230_0 PIN domain K18828 - - 0.0000000000000000000000000000000000000000002385 166.0
YYD1_k127_403230_1 Capsule assembly protein Wzi - - - 0.000000000000000000000000000000000000000009505 172.0
YYD1_k127_403230_2 Polysaccharide biosynthesis/export protein - - - 0.00000000000000002306 93.0
YYD1_k127_403230_3 - - - - 0.000000000001482 70.0
YYD1_k127_403230_4 KOW (Kyprides, Ouzounis, Woese) motif. K05785 - - 0.0000003526 53.0
YYD1_k127_4067438_0 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004681 499.0
YYD1_k127_4067438_1 COG1233 Phytoene dehydrogenase and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 361.0
YYD1_k127_4067438_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 329.0
YYD1_k127_4067438_3 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005858 290.0
YYD1_k127_4067438_4 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000001611 253.0
YYD1_k127_4068172_0 nitric oxide dioxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001943 312.0
YYD1_k127_4068172_1 PFAM UvrB UvrC protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008426 262.0
YYD1_k127_4068172_2 cellulose 1,4-beta-cellobiosidase activity K01278,K01727,K03561,K12287,K21449 - 3.4.14.5,4.2.2.1 0.000000000000000000001618 98.0
YYD1_k127_4068172_3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000009654 61.0
YYD1_k127_4070404_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 411.0
YYD1_k127_4070404_1 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01738,K01883,K12339 - 2.5.1.47,6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006369 284.0
YYD1_k127_4070404_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000002441 270.0
YYD1_k127_4070404_3 Protein of unknown function (DUF3373) - - - 0.00000001267 61.0
YYD1_k127_4070565_0 PFAM Acyl-CoA dehydrogenase, C-terminal domain - - - 7.099e-217 677.0
YYD1_k127_4070565_1 - - - - 1.921e-197 627.0
YYD1_k127_4070565_2 Thiolase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005736 564.0
YYD1_k127_4070565_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 473.0
YYD1_k127_4070565_4 Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 464.0
YYD1_k127_4070565_5 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000008785 101.0
YYD1_k127_4083393_0 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 494.0
YYD1_k127_4083393_1 TIGRFAM sulfate ABC transporter, inner membrane subunit CysT K02046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 417.0
YYD1_k127_4083393_2 Binding-protein-dependent transport system inner membrane component K02047 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 421.0
YYD1_k127_4083393_3 Predicted membrane protein (DUF2061) - - - 0.0000000000000001782 81.0
YYD1_k127_4083393_4 Belongs to the PAPS reductase family. CysH subfamily K00366,K00390,K00860 GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0044424,GO:0044464,GO:0055114 1.7.7.1,1.8.4.10,1.8.4.8,2.7.1.25 0.0000000000000002056 84.0
YYD1_k127_4133383_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 3.877e-299 925.0
YYD1_k127_4133383_1 PFAM Class II aldolase K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003085 549.0
YYD1_k127_4133383_2 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004664 475.0
YYD1_k127_4133383_3 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 427.0
YYD1_k127_4133383_4 esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 332.0
YYD1_k127_4133383_5 - - - - 0.0001707 49.0
YYD1_k127_4148910_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 4.404e-205 648.0
YYD1_k127_4148910_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 408.0
YYD1_k127_4148910_2 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 301.0
YYD1_k127_4148910_3 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 304.0
YYD1_k127_4148910_4 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000008551 242.0
YYD1_k127_4222121_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003234 532.0
YYD1_k127_4222121_1 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009382 433.0
YYD1_k127_4222121_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000584 119.0
YYD1_k127_4222121_11 Phosphoribosyl transferase domain - - - 0.0000000000000000009268 97.0
YYD1_k127_4222121_12 - - - - 0.000000000001531 81.0
YYD1_k127_4222121_13 Uncharacterized small protein (DUF2292) - - - 0.00000001974 58.0
YYD1_k127_4222121_2 GTP1/OBG K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 369.0
YYD1_k127_4222121_3 metal-dependent phosphohydrolase HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004429 363.0
YYD1_k127_4222121_4 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 333.0
YYD1_k127_4222121_5 N,N-dimethylaniline monooxygenase activity K07222 - - 0.000000000000000000000000000000000000000000000000000000002215 213.0
YYD1_k127_4222121_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000002519 184.0
YYD1_k127_4222121_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000005128 139.0
YYD1_k127_4222121_8 Ribosomal L27 protein K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000921 131.0
YYD1_k127_4222121_9 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.000000000000000000000000000000001208 149.0
YYD1_k127_4237976_0 Chase2 domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006467 534.0
YYD1_k127_4237976_1 chlorophyll binding K03286 - - 0.00000000000000000000000000000000000003314 151.0
YYD1_k127_4237976_2 PFAM FecR protein - - - 0.0000000000000000000000000000002482 128.0
YYD1_k127_4237976_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000004535 93.0
YYD1_k127_4237976_4 H( )-stimulated, divalent metal cation uptake system K03322 - - 0.0000005439 53.0
YYD1_k127_4238407_0 Belongs to the PEP-utilizing enzyme family K01006,K22424 - 2.7.3.13,2.7.9.1 0.0 1137.0
YYD1_k127_4238407_1 Required for chromosome condensation and partitioning K03529 - - 3.883e-197 658.0
YYD1_k127_4238407_2 glycyl-tRNA aminoacylation K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 615.0
YYD1_k127_4238407_3 Domain of unknown function (DUF3552) K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006678 495.0
YYD1_k127_4238407_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009329 333.0
YYD1_k127_4238407_5 Na phosphate symporter K03324 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009024 282.0
YYD1_k127_4238407_6 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000005294 108.0
YYD1_k127_4238438_0 ATPase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 411.0
YYD1_k127_4238438_1 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 368.0
YYD1_k127_4238438_2 Type II secretion system (T2SS), protein F K12510 - - 0.00000000000000000000000000000000000000000000000000000000000002608 228.0
YYD1_k127_4238438_3 Type II secretion system K12511 - - 0.00000000000000000000000000000000000000000000000000000002597 208.0
YYD1_k127_4238438_4 Phospholipid methyltransferase - - - 0.00000000000000000000000000000000008908 153.0
YYD1_k127_4238438_5 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000002194 96.0
YYD1_k127_4238438_6 PFAM Type II secretion system protein E K02283 - - 0.000000000000001203 78.0
YYD1_k127_4238438_7 - - - - 0.0000000000003614 77.0
YYD1_k127_4238438_8 - - - - 0.0000000000009113 76.0
YYD1_k127_425105_0 associated with various cellular activities K03695,K03696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 548.0
YYD1_k127_425105_1 PFAM PfkB domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 366.0
YYD1_k127_425105_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.00000000000000000000000000000000000005262 163.0
YYD1_k127_425105_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000299 142.0
YYD1_k127_425105_4 Cytochrome oxidase assembly protein K02259 - - 0.0000000000000000000000000000001757 135.0
YYD1_k127_425105_5 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B - - - 0.000308 49.0
YYD1_k127_4263173_0 PhoH-like protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 391.0
YYD1_k127_4263173_1 MazG nucleotide pyrophosphohydrolase domain K02499 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001251 267.0
YYD1_k127_4263173_2 Domain of unknown function (DUF4388) - - - 0.00000000000000000000000000000009164 135.0
YYD1_k127_4273887_0 ferroxidase activity K03594 GO:0003674,GO:0003824,GO:0004322,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0033212,GO:0033214,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000000000001225 239.0
YYD1_k127_4273887_1 Enoyl-CoA hydratase/isomerase K14469 - 1.3.1.84,4.2.1.116,6.2.1.36 0.00000000000000000000000000000003958 138.0
YYD1_k127_4273887_2 PFAM ABC transporter K06158 - - 0.0000000000000000000000000002549 119.0
YYD1_k127_4312318_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 301.0
YYD1_k127_4312318_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000005136 250.0
YYD1_k127_4322318_0 COG0674 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, alpha subunit K00169 - 1.2.7.1 7.745e-304 948.0
YYD1_k127_4322318_1 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769 2.6.1.83 5.159e-221 692.0
YYD1_k127_4322318_10 RecR protein K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000001126 229.0
YYD1_k127_4322318_11 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.0000000000000000000000000000000000000000000000000000001716 205.0
YYD1_k127_4322318_12 PFAM Roadblock LC7 family protein - - - 0.00000000000000000000000000000000000000000000000008394 182.0
YYD1_k127_4322318_13 AAA domain, putative AbiEii toxin, Type IV TA system K01996 - - 0.00000000000000000000000000000000000000000000004453 187.0
YYD1_k127_4322318_14 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000002717 182.0
YYD1_k127_4322318_15 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000002985 132.0
YYD1_k127_4322318_16 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000004333 135.0
YYD1_k127_4322318_17 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.000000000000000000000007551 119.0
YYD1_k127_4322318_18 Phospholipase_D-nuclease N-terminal K06131 - - 0.0000000000006607 71.0
YYD1_k127_4322318_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 428.0
YYD1_k127_4322318_3 oxidoreductase gamma subunit K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008749 370.0
YYD1_k127_4322318_4 PFAM peptidase U32 K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 341.0
YYD1_k127_4322318_5 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 331.0
YYD1_k127_4322318_6 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 335.0
YYD1_k127_4322318_7 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 339.0
YYD1_k127_4322318_8 peptidase U32 K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 299.0
YYD1_k127_4322318_9 PFAM histone deacetylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007027 312.0
YYD1_k127_4354376_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1124.0
YYD1_k127_4354376_1 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 1.105e-243 782.0
YYD1_k127_4354376_10 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K21025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 362.0
YYD1_k127_4354376_11 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 326.0
YYD1_k127_4354376_12 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003394 285.0
YYD1_k127_4354376_13 TRAP transporter T-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006522 280.0
YYD1_k127_4354376_14 Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007561 268.0
YYD1_k127_4354376_15 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000005779 277.0
YYD1_k127_4354376_16 PFAM OmpA MotB domain protein K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007961 246.0
YYD1_k127_4354376_17 Probably functions as a manganese efflux pump - - - 0.00000000000000000000000000000000000000000000000000000000000000000004703 239.0
YYD1_k127_4354376_18 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.00000000000000000000000000000000000000005958 166.0
YYD1_k127_4354376_19 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000001241 154.0
YYD1_k127_4354376_2 GTP-binding protein TypA K06207 - - 2.822e-236 748.0
YYD1_k127_4354376_3 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000699 536.0
YYD1_k127_4354376_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005512 500.0
YYD1_k127_4354376_5 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003883 445.0
YYD1_k127_4354376_6 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 372.0
YYD1_k127_4354376_7 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 394.0
YYD1_k127_4354376_8 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 368.0
YYD1_k127_4354376_9 PFAM Integral membrane protein TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 350.0
YYD1_k127_4357467_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1099.0
YYD1_k127_4357467_1 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 333.0
YYD1_k127_4357467_2 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 335.0
YYD1_k127_4357467_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000005848 231.0
YYD1_k127_4390147_0 extracellular solute-binding protein, family 5 K02035,K15584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007701 389.0
YYD1_k127_4390147_1 Phospholipase A1 K01058 - 3.1.1.32,3.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002593 271.0
YYD1_k127_4390147_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000001052 204.0
YYD1_k127_4390147_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - 0.000000000000000000000000000000000000000000000006976 186.0
YYD1_k127_4390147_4 WD40-like Beta Propeller Repeat K03641,K08676 - - 0.00000000000000000002254 104.0
YYD1_k127_4390147_5 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000002828 105.0
YYD1_k127_4390147_6 cell adhesion involved in biofilm formation - - - 0.00004452 57.0
YYD1_k127_4396376_0 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 475.0
YYD1_k127_4396376_1 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 397.0
YYD1_k127_4396376_2 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000000004663 190.0
YYD1_k127_4396376_3 oligosaccharyl transferase activity - - - 0.000000000004776 73.0
YYD1_k127_4396376_4 Thioredoxin-like - - - 0.000001162 60.0
YYD1_k127_4396376_5 Thioredoxin-like - - - 0.000007312 51.0
YYD1_k127_4408541_0 Aconitase family (aconitate hydratase) - - - 3.346e-272 852.0
YYD1_k127_4408541_1 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000739 633.0
YYD1_k127_4408541_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 299.0
YYD1_k127_4408541_3 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.00000000000000000000000000000000000000000000000000000000005082 213.0
YYD1_k127_4408541_4 Domain of unknown function (DUF1848) - - - 0.000000000000000000000000000000000000000000000000001817 192.0
YYD1_k127_4408541_5 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016491,GO:0016620,GO:0016903,GO:0019318,GO:0019319,GO:0036094,GO:0043891,GO:0044238,GO:0044281,GO:0044283,GO:0046364,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.2.1.12 0.00000000000000000000000000000000000004988 144.0
YYD1_k127_4408541_6 PFAM Cold-shock protein, DNA-binding K03704 - - 0.000000000000000000000000006666 112.0
YYD1_k127_4408541_7 Preprotein translocase SecG subunit K03075 - - 0.000000000000000000000007793 105.0
YYD1_k127_4489357_0 histidine kinase A domain protein domain protein - - - 0.00000000000000000000000000000000000000000000000000000108 200.0
YYD1_k127_4489357_1 - - - - 0.0000000000007567 74.0
YYD1_k127_4523427_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08357 - - 0.0 1374.0
YYD1_k127_4523427_1 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 1.469e-223 701.0
YYD1_k127_4523427_10 Diguanylate cyclase - - - 0.00000000000000000000000000000000000727 149.0
YYD1_k127_4523427_11 Lipid A 3-O-deacylase (PagL) - - - 0.000000000000000000000000000000009569 135.0
YYD1_k127_4523427_12 cheY-homologous receiver domain - - - 0.00000000000000000000000000000001144 130.0
YYD1_k127_4523427_13 membrane transporter protein K07090 - - 0.00000000000000000000000001243 117.0
YYD1_k127_4523427_14 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000006251 116.0
YYD1_k127_4523427_15 Dodecin K09165 - - 0.00000000000000000000153 96.0
YYD1_k127_4523427_16 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000001561 61.0
YYD1_k127_4523427_17 - - - - 0.0000004144 53.0
YYD1_k127_4523427_2 UbiA prenyltransferase family K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007985 332.0
YYD1_k127_4523427_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 328.0
YYD1_k127_4523427_4 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 291.0
YYD1_k127_4523427_5 16S rRNA methyltransferase RsmB/F K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003894 312.0
YYD1_k127_4523427_6 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005262 284.0
YYD1_k127_4523427_7 Pfam:DUF162 - - - 0.000000000000000000000000000000000000000000000000000000006892 209.0
YYD1_k127_4523427_8 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000007049 188.0
YYD1_k127_4523427_9 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000004696 161.0
YYD1_k127_4569496_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 632.0
YYD1_k127_4569496_1 Multicopper oxidase K22350 - 1.16.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000001034 247.0
YYD1_k127_4569496_2 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.000000000000000000000000000000009114 128.0
YYD1_k127_4626614_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 589.0
YYD1_k127_4626614_1 oxidoreductase activity, acting on other nitrogenous compounds as donors K01118 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0008081,GO:0008150,GO:0008152,GO:0008770,GO:0009987,GO:0016787,GO:0016788,GO:0019752,GO:0032787,GO:0042578,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0071704,GO:0140096 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004032 268.0
YYD1_k127_4626614_2 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000001797 77.0
YYD1_k127_4641719_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 550.0
YYD1_k127_4641719_1 Peptidase family M1 domain - - - 0.0000000000000000006906 89.0
YYD1_k127_4644893_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 5e-324 1007.0
YYD1_k127_4644893_1 ABC-type multidrug transport system ATPase and permease K06147 - - 1.772e-230 728.0
YYD1_k127_4644893_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009321 409.0
YYD1_k127_4644893_3 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009933 327.0
YYD1_k127_4644893_4 Alginate export K16081 - - 0.0000000000000000000000000000000000000000000000000000002736 211.0
YYD1_k127_4647152_0 CHASE2 K01768 - 4.6.1.1 7.244e-215 690.0
YYD1_k127_4647152_1 FecR protein - - - 1.23e-211 677.0
YYD1_k127_4647152_2 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 374.0
YYD1_k127_4647152_3 Hypothetical glycosyl hydrolase family 13 K11931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006258 290.0
YYD1_k127_4647152_4 Thioredoxin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000001355 218.0
YYD1_k127_4647152_5 Tetratrico peptide repeat - - - 0.00008516 56.0
YYD1_k127_4661630_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 2.073e-245 784.0
YYD1_k127_4661630_1 Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 548.0
YYD1_k127_4661630_10 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 404.0
YYD1_k127_4661630_11 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 374.0
YYD1_k127_4661630_12 branched-chain amino acid K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 355.0
YYD1_k127_4661630_13 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003285 359.0
YYD1_k127_4661630_14 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 316.0
YYD1_k127_4661630_15 PFAM WD40 domain protein beta Propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001527 299.0
YYD1_k127_4661630_16 Kdo2-lipid A biosynthetic process K02517,K20543,K22311 - 2.3.1.241,2.3.1.265 0.00000000000000000000000000000000000000000000000000000000000000001594 237.0
YYD1_k127_4661630_17 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.00000000000000000000000000000000000000000000000000005841 188.0
YYD1_k127_4661630_18 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.0000000000000000000000000000000000000002566 151.0
YYD1_k127_4661630_19 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000000002397 148.0
YYD1_k127_4661630_2 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004499 559.0
YYD1_k127_4661630_20 Transcriptional regulator - - - 0.000000000003659 68.0
YYD1_k127_4661630_3 Radical SAM superfamily K06937 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 542.0
YYD1_k127_4661630_4 Periplasmic binding protein K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003972 484.0
YYD1_k127_4661630_5 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 483.0
YYD1_k127_4661630_6 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 459.0
YYD1_k127_4661630_7 PFAM Branched-chain amino acid transport system permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005483 437.0
YYD1_k127_4661630_8 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006798 428.0
YYD1_k127_4661630_9 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005793 422.0
YYD1_k127_46728_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0 1184.0
YYD1_k127_46728_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 8.085e-252 792.0
YYD1_k127_46728_10 Phosphoribosyl transferase domain K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000002401 238.0
YYD1_k127_46728_11 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000001848 242.0
YYD1_k127_46728_12 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000001407 220.0
YYD1_k127_46728_13 cell redox homeostasis - - - 0.000000000000000000000000000000000000000000000000000004117 195.0
YYD1_k127_46728_14 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000006887 203.0
YYD1_k127_46728_15 GGDEF domain - - - 0.0000000000000000000000000000000000000004037 167.0
YYD1_k127_46728_16 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000007447 153.0
YYD1_k127_46728_17 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000007452 143.0
YYD1_k127_46728_18 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000793 149.0
YYD1_k127_46728_19 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000003322 136.0
YYD1_k127_46728_2 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 1.169e-204 649.0
YYD1_k127_46728_20 heme binding - - - 0.00000000000000000000000000000003122 141.0
YYD1_k127_46728_21 cell redox homeostasis - - - 0.00000000000000000000000002494 115.0
YYD1_k127_46728_22 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000001086 120.0
YYD1_k127_46728_23 Regulatory protein - - - 0.0000000000000000000001199 105.0
YYD1_k127_46728_24 Histidine kinase - - - 0.000000000000000000003948 102.0
YYD1_k127_46728_25 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.0000000000000000001444 88.0
YYD1_k127_46728_26 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000002413 72.0
YYD1_k127_46728_27 - - - - 0.0000004526 59.0
YYD1_k127_46728_28 - - - - 0.00005496 50.0
YYD1_k127_46728_29 Helix-turn-helix domain - - - 0.0001146 49.0
YYD1_k127_46728_3 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 449.0
YYD1_k127_46728_4 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 451.0
YYD1_k127_46728_5 phenylalanine-tRNA ligase activity K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 424.0
YYD1_k127_46728_6 Phosphohydrolase-associated domain K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 418.0
YYD1_k127_46728_7 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 348.0
YYD1_k127_46728_8 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 292.0
YYD1_k127_46728_9 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001452 300.0
YYD1_k127_4733643_0 Sigma-54 interaction domain - - - 3.44e-212 674.0
YYD1_k127_4733643_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005683 353.0
YYD1_k127_4733643_2 Di-haem cytochrome c peroxidase - - - 0.000000000000000000000000000000000000000000000000000002913 210.0
YYD1_k127_4733643_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000006837 76.0
YYD1_k127_4795091_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 509.0
YYD1_k127_4795091_1 SMART helicase c2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007715 507.0
YYD1_k127_4795091_2 DnaJ central domain K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 424.0
YYD1_k127_4795091_3 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 363.0
YYD1_k127_4795091_4 PFAM Radical SAM K04070 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 346.0
YYD1_k127_4795091_5 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 316.0
YYD1_k127_4795091_6 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 321.0
YYD1_k127_4795091_7 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.0000000000000000000000000009278 130.0
YYD1_k127_4795091_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000003215 76.0
YYD1_k127_4795091_9 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000003414 71.0
YYD1_k127_4817005_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.301e-252 790.0
YYD1_k127_4817005_1 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 410.0
YYD1_k127_4817005_10 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.00000000000000000000000000003707 123.0
YYD1_k127_4817005_11 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000889 67.0
YYD1_k127_4817005_2 SIS domain K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 410.0
YYD1_k127_4817005_3 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003898 316.0
YYD1_k127_4817005_4 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 336.0
YYD1_k127_4817005_5 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000001452 243.0
YYD1_k127_4817005_6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000000000000000001244 205.0
YYD1_k127_4817005_7 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000002757 174.0
YYD1_k127_4817005_8 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000006704 151.0
YYD1_k127_4817005_9 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.0000000000000000000000000000000000001731 151.0
YYD1_k127_4834556_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 4.211e-256 811.0
YYD1_k127_4834556_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 498.0
YYD1_k127_4834556_10 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000009666 190.0
YYD1_k127_4834556_11 Kdo2-lipid A biosynthetic process K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000002462 177.0
YYD1_k127_4834556_12 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000004342 181.0
YYD1_k127_4834556_13 endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000002609 158.0
YYD1_k127_4834556_14 Domain of unknown function (DUF4416) - - - 0.000000000000000000000000000000000000005206 164.0
YYD1_k127_4834556_15 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.0000000000000000000000000000000000000113 154.0
YYD1_k127_4834556_16 Polynucleotide kinase 3 phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000241 159.0
YYD1_k127_4834556_17 Belongs to the universal stress protein A family - - - 0.00000000000000000000000007464 112.0
YYD1_k127_4834556_18 DUF218 domain - - - 0.000000000000000001138 93.0
YYD1_k127_4834556_19 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000002299 98.0
YYD1_k127_4834556_2 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 389.0
YYD1_k127_4834556_20 Protein of unknown function (DUF3108) - - - 0.0000000000000002519 92.0
YYD1_k127_4834556_21 Tetratricopeptide repeat - - - 0.0000000000005029 81.0
YYD1_k127_4834556_22 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000003227 74.0
YYD1_k127_4834556_23 Belongs to the UPF0434 family K09791 - - 0.000000000003863 78.0
YYD1_k127_4834556_24 Protein of unknown function (DUF3047) - - - 0.000003247 57.0
YYD1_k127_4834556_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 389.0
YYD1_k127_4834556_4 PFAM outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 317.0
YYD1_k127_4834556_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008014 294.0
YYD1_k127_4834556_6 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001567 295.0
YYD1_k127_4834556_7 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006559 284.0
YYD1_k127_4834556_8 Formyl transferase K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000003118 265.0
YYD1_k127_4834556_9 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000721 234.0
YYD1_k127_483673_0 Efflux ABC transporter permease protein K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 301.0
YYD1_k127_483673_1 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000000000001897 214.0
YYD1_k127_483673_2 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000002629 145.0
YYD1_k127_483673_3 Domain of unknown function (DUF1858) - - - 0.000000000000000003036 96.0
YYD1_k127_4840090_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008192 550.0
YYD1_k127_4840090_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 316.0
YYD1_k127_4840090_2 COGs COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007729 292.0
YYD1_k127_4840090_3 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004599 254.0
YYD1_k127_4840090_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000001566 169.0
YYD1_k127_4840090_5 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.000004399 49.0
YYD1_k127_484744_0 PFAM phosphate transporter K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 437.0
YYD1_k127_484744_1 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 407.0
YYD1_k127_484744_2 Ferredoxin--NADP reductase K21567 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 310.0
YYD1_k127_484744_3 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000448 164.0
YYD1_k127_4849091_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 559.0
YYD1_k127_4849091_1 TIGRFAM riboflavin biosynthesis protein RibF K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000001893 265.0
YYD1_k127_4849091_2 Permease YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000001466 204.0
YYD1_k127_4849091_3 PFAM permease YjgP YjgQ family protein K07091 - - 0.0000000000000000000000000000000000000000001471 173.0
YYD1_k127_4849091_4 Belongs to the peptidase S1C family - - - 0.000000009997 68.0
YYD1_k127_4849091_5 NHL repeat - - - 0.0002972 50.0
YYD1_k127_4860064_0 Multicopper K06324 - 1.16.3.3 0.0 1276.0
YYD1_k127_4860064_1 Multicopper - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 494.0
YYD1_k127_4860064_2 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000007302 230.0
YYD1_k127_4860064_3 PFAM aldo keto reductase K07079 - - 0.00000000000000000000000000000000000000000000000000000002245 215.0
YYD1_k127_4865187_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 8.38e-286 889.0
YYD1_k127_4865187_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 410.0
YYD1_k127_4865187_2 PFAM ABC transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007354 357.0
YYD1_k127_4865187_3 PFAM Branched-chain amino acid transport system permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000005604 220.0
YYD1_k127_4865187_4 transcription factor binding - - - 0.000000007125 58.0
YYD1_k127_4936778_0 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 1.932e-248 778.0
YYD1_k127_4936778_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 621.0
YYD1_k127_4936778_2 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 418.0
YYD1_k127_4936778_3 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 385.0
YYD1_k127_4936778_4 Biotin-requiring enzyme - - - 0.0000000000000000000000000000003266 128.0
YYD1_k127_49517_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005469 435.0
YYD1_k127_49517_1 2-hydroxyglutaryl-CoA dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 345.0
YYD1_k127_49517_2 PFAM 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 352.0
YYD1_k127_49517_3 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000003663 217.0
YYD1_k127_49517_4 Transcription regulator MerR DNA binding K21902 - - 0.000000000000000000000000000000000002575 141.0
YYD1_k127_49517_5 Tetratricopeptide repeat - - - 0.000000000000001427 90.0
YYD1_k127_4955353_0 Exopolysaccharide biosynthesis protein YbjH - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005262 507.0
YYD1_k127_4955353_1 - - - - 0.0000000000000000000000000001678 124.0
YYD1_k127_4956351_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 6.295e-199 646.0
YYD1_k127_4956351_1 denitrification pathway K02569,K21636 - 1.1.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 464.0
YYD1_k127_4956351_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 387.0
YYD1_k127_4956351_3 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005211 360.0
YYD1_k127_4956351_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 332.0
YYD1_k127_4956351_5 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001938 275.0
YYD1_k127_4956351_6 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000003146 191.0
YYD1_k127_4956351_7 peroxiredoxin activity - - - 0.000000000000000000000000000000000000000000000001403 182.0
YYD1_k127_4956351_8 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000009862 148.0
YYD1_k127_4956351_9 - - - - 0.00000000000000000007466 91.0
YYD1_k127_4957046_0 B12 binding domain K00548 - 2.1.1.13 2e-323 1024.0
YYD1_k127_4957046_1 homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 9.415e-271 846.0
YYD1_k127_4957046_10 MotA/TolQ/ExbB proton channel family K03562 - - 0.00000000000000000000000000000000000000000000000000006166 197.0
YYD1_k127_4957046_11 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000001245 152.0
YYD1_k127_4957046_12 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000000000000000000000000003119 157.0
YYD1_k127_4957046_13 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000009384 128.0
YYD1_k127_4957046_14 Cytochrome b(C-terminal)/b6/petD K00412 - - 0.00000000000000000000001143 105.0
YYD1_k127_4957046_15 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.00000000000000000000003277 109.0
YYD1_k127_4957046_16 Belongs to the Fur family K03711,K09825 - - 0.0000000000000000000006846 100.0
YYD1_k127_4957046_17 Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule - - - 0.00000000000004876 84.0
YYD1_k127_4957046_18 TonB C terminal - - - 0.0000000004706 70.0
YYD1_k127_4957046_2 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 3.261e-221 698.0
YYD1_k127_4957046_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 571.0
YYD1_k127_4957046_4 denitrification pathway K02569,K15876 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006697 460.0
YYD1_k127_4957046_5 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K04013,K15876 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005379 350.0
YYD1_k127_4957046_6 4Fe-4S binding domain K08358 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 354.0
YYD1_k127_4957046_7 TolB amino-terminal domain K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001299 280.0
YYD1_k127_4957046_8 Cytochrome c554 and c-prime K03620 - - 0.0000000000000000000000000000000000000000000000000000000000000000007667 256.0
YYD1_k127_4957046_9 Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions K02635 GO:0005575,GO:0005622,GO:0005623,GO:0009512,GO:0009579,GO:0016020,GO:0032991,GO:0034357,GO:0042651,GO:0044424,GO:0044436,GO:0044464,GO:0070069 - 0.00000000000000000000000000000000000000000000000000000001681 213.0
YYD1_k127_4965097_0 Bacterial transcriptional activator domain - - - 5.739e-201 666.0
YYD1_k127_4965097_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 312.0
YYD1_k127_4965097_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 328.0
YYD1_k127_4965097_3 Stage II sporulation D domain protein K06381 - - 0.000000000000000000000000000000000000000000002156 183.0
YYD1_k127_4965097_4 PFAM Band 7 protein - - - 0.000000000000000000000000000001053 122.0
YYD1_k127_4976877_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.129e-213 706.0
YYD1_k127_4976877_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 447.0
YYD1_k127_4976877_2 PFAM Silent information regulator protein Sir2 K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004558 277.0
YYD1_k127_4976877_3 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000008292 214.0
YYD1_k127_4976877_4 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.000000000000000000000000000000000000000215 158.0
YYD1_k127_4976877_5 sterol carrier protein - - - 0.000000000000000000222 92.0
YYD1_k127_4976877_6 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000001836 79.0
YYD1_k127_4976877_7 - - - - 0.0000000001439 63.0
YYD1_k127_4979221_0 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 526.0
YYD1_k127_4979221_1 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000002585 174.0
YYD1_k127_4979221_2 peroxiredoxin activity - - - 0.000000000000000000000000000000003977 135.0
YYD1_k127_4979221_3 HEAT repeat - - - 0.00000000000000000000000001825 124.0
YYD1_k127_4979221_4 Glycosyltransferase, group 2 family protein - - - 0.00000000000000000000001579 103.0
YYD1_k127_4979221_5 Predicted permease - - - 0.0000000000000001864 82.0
YYD1_k127_4981185_0 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 308.0
YYD1_k127_4981185_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 310.0
YYD1_k127_4981185_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000005748 265.0
YYD1_k127_4981185_3 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000005792 172.0
YYD1_k127_4981185_4 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000003056 90.0
YYD1_k127_4981185_5 PFAM AIR synthase related protein - - - 0.0003881 44.0
YYD1_k127_4984786_0 Protein of unknown function (DUF1343) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005173 608.0
YYD1_k127_4984786_1 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 525.0
YYD1_k127_4984786_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003793 266.0
YYD1_k127_4984786_3 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000004668 191.0
YYD1_k127_4984786_4 Haem-degrading K11477 - - 0.000003652 51.0
YYD1_k127_498691_0 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 495.0
YYD1_k127_498691_1 HAMP domain K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009002 408.0
YYD1_k127_498691_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 346.0
YYD1_k127_498691_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000007905 239.0
YYD1_k127_498691_4 metallopeptidase activity K06974 - - 0.000000000000000000000000000000000009942 158.0
YYD1_k127_498691_5 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000000004758 145.0
YYD1_k127_5030902_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0009892,GO:0010605,GO:0016020,GO:0016853,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031324,GO:0032069,GO:0032074,GO:0040007,GO:0043086,GO:0043167,GO:0043169,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060700,GO:0060701,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0140097 5.99.1.2 5.228e-256 816.0
YYD1_k127_5030902_1 two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 434.0
YYD1_k127_5030902_2 TIGRFAM DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000001544 231.0
YYD1_k127_5030902_3 LysM domain - - - 0.00000000000000000000008704 111.0
YYD1_k127_504680_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 332.0
YYD1_k127_504680_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000006168 241.0
YYD1_k127_504680_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000002295 153.0
YYD1_k127_504680_3 Pilus assembly protein, PilO K02664 - - 0.0000000000000000000000000000000000000297 150.0
YYD1_k127_504680_4 PFAM Fimbrial assembly family protein K02663 - - 0.00000000000000000001034 99.0
YYD1_k127_504680_5 PFAM helix-turn-helix domain protein - - - 0.000000000000000003133 88.0
YYD1_k127_504680_6 Pilus assembly protein, PilP K02665 - - 0.0000000008223 70.0
YYD1_k127_504680_8 cell adhesion K02650,K02682 - - 0.00006063 54.0
YYD1_k127_5047542_0 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007403 528.0
YYD1_k127_5047542_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000003658 254.0
YYD1_k127_5047542_2 signal sequence binding K07152 - - 0.0000000000000000000000000000000000000000000000000008903 208.0
YYD1_k127_506903_0 Extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 561.0
YYD1_k127_506903_1 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 459.0
YYD1_k127_506903_2 ABC-type sugar transport system, permease component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 355.0
YYD1_k127_506903_3 ABC transporter permease K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005857 353.0
YYD1_k127_506903_4 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000003617 257.0
YYD1_k127_506903_5 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000001897 198.0
YYD1_k127_506903_6 Nucleotidyl transferase K00966,K16881 - 2.7.7.13,5.4.2.8 0.000000000000000000000000000000000000000000005544 187.0
YYD1_k127_506903_7 Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000002082 167.0
YYD1_k127_506903_8 transglycosylase K08309 - - 0.0000000000000000000000008876 121.0
YYD1_k127_506903_9 Xylose isomerase-like TIM barrel - - - 0.00000000000000000001867 104.0
YYD1_k127_5072370_0 Cytochrome c554 and c-prime - - - 0.000000000000008822 82.0
YYD1_k127_5072370_1 cellulase activity K01181 - 3.2.1.8 0.000000000004551 79.0
YYD1_k127_5072370_4 Histidine kinase - - - 0.0001096 51.0
YYD1_k127_5122082_0 Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007316 452.0
YYD1_k127_5122082_1 PFAM Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 405.0
YYD1_k127_5122082_2 cellulase activity - - - 0.0000344 56.0
YYD1_k127_5233519_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 3.359e-313 975.0
YYD1_k127_5233519_1 AAA ATPase K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 489.0
YYD1_k127_5233519_10 - - - - 0.0000002655 59.0
YYD1_k127_5233519_2 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000463 394.0
YYD1_k127_5233519_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008584 319.0
YYD1_k127_5233519_4 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007611 315.0
YYD1_k127_5233519_5 Peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 299.0
YYD1_k127_5233519_6 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.0000000000000000000000000000000000000000000000000000000001799 208.0
YYD1_k127_5233519_7 Hydrolase K07025 - - 0.0000000000000000000000000000000000000001276 171.0
YYD1_k127_5233519_8 metalloendopeptidase activity K03799 - - 0.000000000000000000000000000387 126.0
YYD1_k127_5233519_9 Curli production assembly/transport component CsgG - - - 0.000000000000001388 79.0
YYD1_k127_5273200_0 TIGRFAM methylmalonyl-CoA mutase, large subunit K01848 - 5.4.99.2 1.906e-218 717.0
YYD1_k127_5273200_1 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 495.0
YYD1_k127_5273200_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008062 392.0
YYD1_k127_5273200_3 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000003041 195.0
YYD1_k127_5273200_4 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000001119 174.0
YYD1_k127_5273200_5 B12 binding domain K01849 - 5.4.99.2 0.0000000000000000000000000000000229 127.0
YYD1_k127_5295974_0 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 1.068e-196 622.0
YYD1_k127_5295974_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 603.0
YYD1_k127_5295974_10 Phosphatidylserine decarboxylase K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000002755 202.0
YYD1_k127_5295974_11 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000002979 171.0
YYD1_k127_5295974_12 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000009195 149.0
YYD1_k127_5295974_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 518.0
YYD1_k127_5295974_3 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004073,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009081,GO:0009082,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 448.0
YYD1_k127_5295974_4 3-isopropylmalate dehydrogenase activity K00052 GO:0000287,GO:0003674,GO:0003824,GO:0003862,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0030145,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034198,GO:0042594,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0055114,GO:0071496,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1990928 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 431.0
YYD1_k127_5295974_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 297.0
YYD1_k127_5295974_6 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000172 244.0
YYD1_k127_5295974_7 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000002699 244.0
YYD1_k127_5295974_8 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000001042 232.0
YYD1_k127_5295974_9 TIGRFAM acetolactate synthase, small subunit K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000003599 225.0
YYD1_k127_5342132_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 1.683e-203 641.0
YYD1_k127_5342132_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002399 282.0
YYD1_k127_5342132_2 cytochrome c K02305 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000001711 231.0
YYD1_k127_5342132_3 PFAM Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000112 119.0
YYD1_k127_5342132_4 2-Nitropropane dioxygenase - - - 0.000000000000000003495 89.0
YYD1_k127_5342132_5 Carbonic anhydrase K01673 - 4.2.1.1 0.00000000003237 66.0
YYD1_k127_5342132_6 Phenazine biosynthesis-like protein - - - 0.00000001992 63.0
YYD1_k127_5358562_0 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 5.687e-199 643.0
YYD1_k127_5358562_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002046 537.0
YYD1_k127_5358562_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 445.0
YYD1_k127_5358562_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 427.0
YYD1_k127_5358562_4 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 304.0
YYD1_k127_5358562_5 DRTGG domain K13788 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000001403 258.0
YYD1_k127_5358562_6 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000004963 170.0
YYD1_k127_5358562_7 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000007913 153.0
YYD1_k127_5358562_8 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.0000000000000002178 91.0
YYD1_k127_5376881_0 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 413.0
YYD1_k127_5376881_1 Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2- amino-3,7-dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids K11645 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 336.0
YYD1_k127_5376881_10 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000007555 79.0
YYD1_k127_5376881_11 lyase activity - - - 0.00004658 56.0
YYD1_k127_5376881_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 331.0
YYD1_k127_5376881_3 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 317.0
YYD1_k127_5376881_4 3-dehydroquinate synthase (EC 4.6.1.3) K11646 - 1.4.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002071 290.0
YYD1_k127_5376881_5 Protein of unknown function (DUF2400) - - - 0.00000000000000000000000000000000000000000000004499 190.0
YYD1_k127_5376881_6 Methylase involved in ubiquinone menaquinone K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000002289 175.0
YYD1_k127_5376881_7 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000000000000005886 156.0
YYD1_k127_5376881_8 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000003371 108.0
YYD1_k127_5376881_9 Protein of unknown function (DUF3426) - - - 0.000000000000000006731 94.0
YYD1_k127_5391552_0 Citrate lyase, alpha subunit (CitF) - - - 4.05e-279 874.0
YYD1_k127_5391552_1 metal-dependent phosphohydrolase HD region K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005335 363.0
YYD1_k127_5391552_2 Thioredoxin reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000002443 167.0
YYD1_k127_5391552_3 Divergent 4Fe-4S mono-cluster K05337 - - 0.00000000000000000000001933 101.0
YYD1_k127_5391552_4 Curli production assembly/transport component CsgG - - - 0.000000000000000003359 97.0
YYD1_k127_5391552_5 Lipoprotein - - - 0.000000000000000004383 93.0
YYD1_k127_5426017_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007907 277.0
YYD1_k127_5426017_1 lipoprotein transporter activity K02003,K09810 - - 0.00000000000000000000000000000000000000000000000000000000005312 214.0
YYD1_k127_5426017_2 Predicted membrane protein (DUF2318) - - - 0.000000000000000000000000000000000001495 145.0
YYD1_k127_5494908_0 Carbamoyl-phosphate synthetase large chain domain protein K01959,K01961 - 6.3.4.14,6.4.1.1,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 598.0
YYD1_k127_5494908_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000618 433.0
YYD1_k127_5494908_10 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000009977 163.0
YYD1_k127_5494908_11 Diguanylate cyclase - - - 0.00000000000000000000000000000000000001886 160.0
YYD1_k127_5494908_12 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019438,GO:0019632,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0046872,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000000000003182 135.0
YYD1_k127_5494908_13 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000008802 133.0
YYD1_k127_5494908_14 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000008256 119.0
YYD1_k127_5494908_15 Pilus assembly protein, PilP K02665 - - 0.00000000000000000002184 100.0
YYD1_k127_5494908_16 Winged helix DNA-binding domain - - - 0.00000000000000000006352 97.0
YYD1_k127_5494908_17 peptidyl-tyrosine sulfation - - - 0.00000000000007487 84.0
YYD1_k127_5494908_18 - - - - 0.0000000000107 72.0
YYD1_k127_5494908_19 RDD family - - - 0.0000000005509 65.0
YYD1_k127_5494908_2 type IV pilus secretin PilQ K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 407.0
YYD1_k127_5494908_20 response regulator - - - 0.000000004474 59.0
YYD1_k127_5494908_21 PFAM Pilus assembly protein PilO K02664 - - 0.00000008066 61.0
YYD1_k127_5494908_22 PFAM type II and III secretion system protein K02666 - - 0.0000004251 61.0
YYD1_k127_5494908_23 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00001502 59.0
YYD1_k127_5494908_25 Tetratricopeptide repeats - - - 0.0001114 54.0
YYD1_k127_5494908_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 384.0
YYD1_k127_5494908_4 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 334.0
YYD1_k127_5494908_5 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0072344,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112,GO:2000113,GO:2001124,GO:2001125 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001059 267.0
YYD1_k127_5494908_6 Creatinase Prolidase N-terminal domain K01262,K01271 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000002913 257.0
YYD1_k127_5494908_7 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000001916 265.0
YYD1_k127_5494908_8 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000000000000000000000000000000006776 198.0
YYD1_k127_5494908_9 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000002322 190.0
YYD1_k127_5501605_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000001704 118.0
YYD1_k127_5501605_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000004535 93.0
YYD1_k127_5501605_2 pyrroloquinoline quinone binding - - - 0.00000000000000000001075 100.0
YYD1_k127_5501605_3 Putative zinc-finger - GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00002032 57.0
YYD1_k127_5514770_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 525.0
YYD1_k127_5514770_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 466.0
YYD1_k127_5514770_2 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11779,K11784 - 1.21.98.1,2.5.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 409.0
YYD1_k127_5514770_3 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 288.0
YYD1_k127_5514770_4 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000007524 161.0
YYD1_k127_5514770_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000003107 146.0
YYD1_k127_5514770_6 Rubrerythrin - - - 0.00000000000000002695 93.0
YYD1_k127_5514770_7 Rubrerythrin - - - 0.00000000000124 75.0
YYD1_k127_5514770_8 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 0.000000000005849 67.0
YYD1_k127_5563923_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 1.012e-221 695.0
YYD1_k127_5563923_1 PFAM Cysteine-rich domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 586.0
YYD1_k127_5563923_10 abc transporter K01995 - - 0.00000000000000000000000000000000000000000000000000001364 209.0
YYD1_k127_5563923_2 Pfam:DUF162 K18929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 468.0
YYD1_k127_5563923_3 Cysteine-rich domain K18928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 359.0
YYD1_k127_5563923_4 Regulatory protein GntR HTH K05799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 321.0
YYD1_k127_5563923_5 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 304.0
YYD1_k127_5563923_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001032 281.0
YYD1_k127_5563923_7 branched-chain amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006862 275.0
YYD1_k127_5563923_8 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000001182 258.0
YYD1_k127_5563923_9 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000002177 223.0
YYD1_k127_5564026_0 PFAM peptidase M1, membrane alanine aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 632.0
YYD1_k127_5564026_1 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 322.0
YYD1_k127_556836_0 Acyl-CoA dehydrogenase, N-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 475.0
YYD1_k127_556836_1 regulatory protein IclR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 313.0
YYD1_k127_556836_2 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 292.0
YYD1_k127_556836_3 fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006116 283.0
YYD1_k127_556836_4 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000001727 228.0
YYD1_k127_556836_5 PFAM regulatory protein TetR K13770 - - 0.0000000000000000000000000000000000000000000000000000008589 199.0
YYD1_k127_556836_6 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.000000000000000000000000001465 117.0
YYD1_k127_556836_7 Tetratricopeptide repeat - - - 0.000000000000000000000000007331 117.0
YYD1_k127_556836_8 PFAM ADP-ribosylglycohydrolase - - - 0.000000000000001499 90.0
YYD1_k127_556836_9 4Fe-4S dicluster domain - - - 0.0000001547 53.0
YYD1_k127_5611209_0 4Fe-4S dicluster domain K00184 - - 5.12e-277 873.0
YYD1_k127_5611209_1 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000006232 214.0
YYD1_k127_5611209_2 Cytochrome c - - - 0.0000000000000000000000009978 108.0
YYD1_k127_5639098_0 SMART Elongator protein 3 MiaB NifB K22227 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 554.0
YYD1_k127_5639098_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000003575 188.0
YYD1_k127_5639098_2 helix_turn_helix, mercury resistance - - - 0.000000000000002595 83.0
YYD1_k127_5639098_3 von Willebrand factor type A domain - - - 0.000000000000003124 86.0
YYD1_k127_5649085_0 AMP-binding enzyme C-terminal domain K00666 - - 1.024e-228 719.0
YYD1_k127_5649085_1 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006853 551.0
YYD1_k127_5649085_2 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 417.0
YYD1_k127_5649085_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 363.0
YYD1_k127_5649085_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006509 330.0
YYD1_k127_5649085_5 Abc transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 315.0
YYD1_k127_5649085_6 ABC transporter, ATP-binding protein K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007712 291.0
YYD1_k127_5649085_7 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K21147 - 2.7.7.80,2.8.1.11 0.000000008287 57.0
YYD1_k127_5662888_0 PFAM Cys Met metabolism K01739,K01760 - 2.5.1.48,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 385.0
YYD1_k127_5662888_1 nitrite sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 313.0
YYD1_k127_5662888_2 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01738,K01883,K12339 - 2.5.1.47,6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000002128 247.0
YYD1_k127_5662888_3 Transcriptional regulator - - - 0.0000000000000000000000002247 111.0
YYD1_k127_5662888_4 Sulfurtransferase TusA K04085 - - 0.00000005918 64.0
YYD1_k127_577611_0 Aminotransferase K11358 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008735 409.0
YYD1_k127_577611_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 342.0
YYD1_k127_577611_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K02405 - - 0.00000000000000000000000000000000000000000000000000000000006726 213.0
YYD1_k127_577611_3 RmuC family K09760 - - 0.0000000000000000000000000000000006659 145.0
YYD1_k127_577611_4 Zincin-like metallopeptidase - - - 0.00000000000000000000000005784 113.0
YYD1_k127_5779285_0 NADH-quinone oxidoreductase chain L K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009055 568.0
YYD1_k127_5779285_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 355.0
YYD1_k127_5779285_2 NAD binding K00333,K13378 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 305.0
YYD1_k127_5779285_3 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000005512 139.0
YYD1_k127_5779285_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000008009 103.0
YYD1_k127_5779285_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000001241 109.0
YYD1_k127_5784364_0 PFAM Aldehyde dehydrogenase family K00128,K00135,K00146,K22187 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.39,1.2.1.79 1.042e-207 661.0
YYD1_k127_5784364_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 522.0
YYD1_k127_5784364_2 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007865 418.0
YYD1_k127_5784364_3 Calcineurin-like phosphoesterase K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 349.0
YYD1_k127_5784364_4 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000001306 283.0
YYD1_k127_5784364_5 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000009673 180.0
YYD1_k127_5784364_6 glutamine amidotransferase K07008 - 3.5.1.118 0.0000000000001483 80.0
YYD1_k127_5784364_7 Putative regulatory protein - - - 0.000000000002177 70.0
YYD1_k127_5808168_0 H( )-stimulated, divalent metal cation uptake system K03322 - - 2.481e-227 720.0
YYD1_k127_5808168_1 NUDIX domain K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 313.0
YYD1_k127_5808168_2 Domain of unknown function (DUF4118) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 299.0
YYD1_k127_5808168_3 - - - - 0.000000000009012 77.0
YYD1_k127_5808965_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 532.0
YYD1_k127_5808965_1 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 438.0
YYD1_k127_5808965_10 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000353 87.0
YYD1_k127_5808965_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006808 408.0
YYD1_k127_5808965_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648,K18003 - 2.3.1.180,2.3.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 404.0
YYD1_k127_5808965_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 312.0
YYD1_k127_5808965_5 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003831 268.0
YYD1_k127_5808965_6 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000002438 275.0
YYD1_k127_5808965_7 TIGRFAM preprotein translocase, YajC subunit K03210 - - 0.0000000000000000000000000000003932 126.0
YYD1_k127_5808965_8 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000000001489 130.0
YYD1_k127_5808965_9 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B K00528,K02823 - 1.18.1.2,1.19.1.1 0.0000000000000000003281 97.0
YYD1_k127_5822876_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 534.0
YYD1_k127_5822876_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 505.0
YYD1_k127_5822876_10 Heavy-metal resistance - - - 0.00000002455 65.0
YYD1_k127_5822876_2 Mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004238 411.0
YYD1_k127_5822876_3 Belongs to the pseudouridine synthase RluA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 385.0
YYD1_k127_5822876_4 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K01838 - 5.4.2.6 0.00000000000000000000000000000000000000000000000000000000000000003836 248.0
YYD1_k127_5822876_5 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000000000000000000000000000000000000000000000002771 214.0
YYD1_k127_5822876_6 Selenoprotein B glycine betaine sarcosine D-proline reductase K10794 - 1.21.4.1 0.0000000000000000000000000000000000000000000000000008932 189.0
YYD1_k127_5822876_7 - - - - 0.000000000000000000000000000000000009102 139.0
YYD1_k127_5822876_8 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000001008 102.0
YYD1_k127_5822876_9 ACT domain K01653,K16785 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.00000000000000000000001503 118.0
YYD1_k127_5827070_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 313.0
YYD1_k127_5827070_1 SMART Elongator protein 3 MiaB NifB K07139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003575 289.0
YYD1_k127_5827070_2 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000001132 212.0
YYD1_k127_5827070_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000001356 151.0
YYD1_k127_5827070_4 Thioesterase superfamily - - - 0.0000000000000000000000000000004112 129.0
YYD1_k127_5827070_5 Tetratricopeptide repeat - - - 0.000000000000000000004507 106.0
YYD1_k127_5827070_6 Papain-like cysteine protease AvrRpt2 - - - 0.0000000000000000002767 99.0
YYD1_k127_5827070_7 - - - - 0.00000000000007176 77.0
YYD1_k127_5827070_8 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000001 74.0
YYD1_k127_5827070_9 Putative zinc-finger - - - 0.000000003804 70.0
YYD1_k127_5829993_0 Belongs to the peptidase S16 family K01338,K04076 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 583.0
YYD1_k127_5829993_1 Acetyl-coenzyme A transporter 1 K08218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 561.0
YYD1_k127_5829993_2 Belongs to the class I fructose-bisphosphate aldolase family K01623 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 467.0
YYD1_k127_5829993_3 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005401 283.0
YYD1_k127_5829993_4 fumarate reductase) cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001393 268.0
YYD1_k127_5829993_5 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.00000000000000000000000000000000000000000000000000000000000000000000782 262.0
YYD1_k127_5829993_6 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000001236 192.0
YYD1_k127_5829993_7 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 - - 0.0000000000000000000000000000000000000000000000002812 184.0
YYD1_k127_5829993_8 PFAM Cyclic nucleotide-binding K10914,K21563 - - 0.00000000000000000000005422 109.0
YYD1_k127_5849437_0 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 472.0
YYD1_k127_5849437_1 N-terminal domain of galactosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006842 391.0
YYD1_k127_5849437_2 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 342.0
YYD1_k127_5849437_3 PFAM glycosyl transferase family 9 K02841 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 317.0
YYD1_k127_5849437_4 Glycosyltransferase family 9 (heptosyltransferase) K02843,K02849 - - 0.0000000000000000000000000000000000000000005562 176.0
YYD1_k127_5849437_5 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000003081 130.0
YYD1_k127_5849437_6 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000001898 117.0
YYD1_k127_5849437_7 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - - - 0.000005206 49.0
YYD1_k127_5851593_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001899 373.0
YYD1_k127_5851593_1 PDZ DHR GLGF domain protein K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009136 365.0
YYD1_k127_5851593_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000721 336.0
YYD1_k127_5851593_3 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000002487 269.0
YYD1_k127_5851593_4 Ribosome recycling factor K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000002069 213.0
YYD1_k127_5851593_5 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000001504 206.0
YYD1_k127_5851593_6 Glycoprotease family K14742 - - 0.00000000000000000000000000000000000004246 151.0
YYD1_k127_5851593_7 PFAM phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.000000000000000000000000000000000001157 149.0
YYD1_k127_5851593_8 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000009454 117.0
YYD1_k127_5851593_9 dihydromethanopterin reductase activity - - - 0.0000000000000000004848 88.0
YYD1_k127_586541_0 Protein involved in outer membrane biogenesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 322.0
YYD1_k127_586541_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000001972 263.0
YYD1_k127_586541_2 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.000001229 52.0
YYD1_k127_589025_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 351.0
YYD1_k127_589025_1 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000001494 212.0
YYD1_k127_589025_2 TIGRFAM cytochrome C family protein - - - 0.00000000000000000000000001311 126.0
YYD1_k127_589025_3 denitrification pathway - - - 0.000000000000000000084 97.0
YYD1_k127_590281_0 TIGRFAM cytochrome C family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008604 551.0
YYD1_k127_590281_1 PFAM NAD-dependent epimerase dehydratase K08678 - 4.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 512.0
YYD1_k127_590281_2 PFAM ResB family protein K07399 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 379.0
YYD1_k127_590281_3 PFAM cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006626 350.0
YYD1_k127_590281_4 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 333.0
YYD1_k127_590281_5 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 292.0
YYD1_k127_590281_6 heat shock protein binding K03686,K04082,K05516 - - 0.0000000000002431 74.0
YYD1_k127_592763_0 cyclopropane-fatty-acyl-phospholipid synthase K00574,K07154,K14369,K15257,K18534 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009987,GO:0016740,GO:0016741,GO:0016999,GO:0017000,GO:0017144,GO:0032259,GO:0044237,GO:0044249 2.1.1.254,2.1.1.295,2.1.1.79,2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 416.0
YYD1_k127_592763_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005863 355.0
YYD1_k127_592763_2 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002114 276.0
YYD1_k127_592763_3 PFAM MaoC domain protein dehydratase - - - 0.000000000000000000000000000000000000000000004172 168.0
YYD1_k127_592763_4 TIGRFAM addiction module antidote protein, HigA family K21498 - - 0.0000000000000000000000000000000000003524 142.0
YYD1_k127_592763_5 RelE-like toxin of type II toxin-antitoxin system HigB - - - 0.000000000000005747 79.0
YYD1_k127_592763_6 PFAM plasmid stabilization system K06218 - - 0.00000000000001759 73.0
YYD1_k127_60263_0 Belongs to the thiolase family K00626 - 2.3.1.9 7.587e-214 670.0
YYD1_k127_60263_1 Glycosyl hydrolase family 57 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 520.0
YYD1_k127_60263_10 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000001751 202.0
YYD1_k127_60263_11 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000000000000000001893 184.0
YYD1_k127_60263_12 B12 binding domain K01849 - 5.4.99.2 0.000000000000000000000000000000000000000008872 155.0
YYD1_k127_60263_13 Tetratricopeptide repeat - - - 0.00000008962 62.0
YYD1_k127_60263_2 acyl-coa dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 452.0
YYD1_k127_60263_3 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 403.0
YYD1_k127_60263_4 Coenzyme A transferase K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004902 397.0
YYD1_k127_60263_5 Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 365.0
YYD1_k127_60263_6 TIGRFAM LAO AO transport system ATPase K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008973 347.0
YYD1_k127_60263_7 SMART phosphoesterase PHP domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000003493 255.0
YYD1_k127_60263_8 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000000000000000000000000000000000152 241.0
YYD1_k127_60263_9 Domain of unknown function (DUF4388) - - - 0.0000000000000000000000000000000000000000000000000000004102 213.0
YYD1_k127_6047158_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004715 323.0
YYD1_k127_6047158_1 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000007143 207.0
YYD1_k127_6047158_3 PFAM NHL repeat containing protein - - - 0.000000000000000001105 100.0
YYD1_k127_6047158_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.00000098 55.0
YYD1_k127_6075551_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1686.0
YYD1_k127_6075551_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 4.476e-209 663.0
YYD1_k127_6075551_2 PFAM Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 518.0
YYD1_k127_6075551_3 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008652 306.0
YYD1_k127_6075551_4 Domain of unknown function (DUF4124) K08309 - - 0.00000000000000000000000000000000000000000000000002303 185.0
YYD1_k127_6075551_5 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.0000000000000000000000000000000000000008812 162.0
YYD1_k127_6075551_6 ABC transporter K01996 - - 0.00000000000001146 74.0
YYD1_k127_6083726_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 6.163e-205 662.0
YYD1_k127_6083726_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 359.0
YYD1_k127_6083726_2 Collagenase K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 355.0
YYD1_k127_6083726_3 Iron-sulfur cluster assembly protein K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 302.0
YYD1_k127_6083726_4 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000172 251.0
YYD1_k127_6083726_5 lactoylglutathione lyase activity K03088 - - 0.00000000000000000000000000000000000000000000000000000000001305 217.0
YYD1_k127_6083726_6 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000002255 212.0
YYD1_k127_6083726_7 beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000007913 214.0
YYD1_k127_6083726_8 phosphinothricin N-acetyltransferase activity - - - 0.00000000000000000000000000000000000000000241 163.0
YYD1_k127_6083726_9 Thioesterase superfamily - - - 0.00000000000002041 79.0
YYD1_k127_6085628_0 SNARE associated Golgi protein K01077 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008756 299.0
YYD1_k127_6085628_1 Butirosin biosynthesis protein H, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000005118 239.0
YYD1_k127_6085628_2 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000001483 196.0
YYD1_k127_6085628_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.00000000000000000000000000003554 126.0
YYD1_k127_6090986_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008161 327.0
YYD1_k127_6090986_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005233 296.0
YYD1_k127_6090986_2 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000297 261.0
YYD1_k127_6090986_3 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000008578 232.0
YYD1_k127_6090986_4 Amidohydrolase family K20810 - 3.5.4.40 0.00000000000000000000000000000000000000000000000001244 202.0
YYD1_k127_6090986_5 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000000001967 175.0
YYD1_k127_6090986_6 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000000004906 158.0
YYD1_k127_6090986_7 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.0001643 45.0
YYD1_k127_6093760_0 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 558.0
YYD1_k127_6093760_1 ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 386.0
YYD1_k127_6093760_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000323 256.0
YYD1_k127_6093760_3 ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000003249 206.0
YYD1_k127_6093760_4 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000000000738 194.0
YYD1_k127_6093760_5 SCO1/SenC K07152 - - 0.00000000000000000000000000000000000000003163 168.0
YYD1_k127_6093760_6 protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.0000000000000000013 91.0
YYD1_k127_6093760_7 Alternative locus ID - - - 0.0000007089 57.0
YYD1_k127_6093760_8 amine dehydrogenase activity - - - 0.00002069 51.0
YYD1_k127_6124811_0 carbamoyl transferase, NodU family K00612 - - 4.672e-294 913.0
YYD1_k127_6124811_1 Glutamine amidotransferase domain K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005623 534.0
YYD1_k127_6124811_10 Protein of unknown function (DUF1698) K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000001739 260.0
YYD1_k127_6124811_11 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000007682 187.0
YYD1_k127_6124811_12 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000297 154.0
YYD1_k127_6124811_13 - - - - 0.000000000000000000000094 104.0
YYD1_k127_6124811_14 PFAM DoxX K15977 - - 0.000000000000000007854 97.0
YYD1_k127_6124811_15 - - - - 0.000000000002409 68.0
YYD1_k127_6124811_16 transcription activator, effector binding - - - 0.000000003705 65.0
YYD1_k127_6124811_17 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000002795 66.0
YYD1_k127_6124811_18 methyltransferase K16215 - 2.1.1.243 0.00008879 48.0
YYD1_k127_6124811_2 Putative citrate transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004618 450.0
YYD1_k127_6124811_3 ABC-type polysaccharide polyol phosphate transport system ATPase component K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005038 397.0
YYD1_k127_6124811_4 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 348.0
YYD1_k127_6124811_5 transferase activity, transferring glycosyl groups K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 312.0
YYD1_k127_6124811_6 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 300.0
YYD1_k127_6124811_7 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 297.0
YYD1_k127_6124811_8 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000519 289.0
YYD1_k127_6124811_9 transport, permease protein K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001177 273.0
YYD1_k127_6157330_0 PEP-utilising enzyme, N-terminal K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 585.0
YYD1_k127_6157330_1 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000621 282.0
YYD1_k127_6157330_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000003173 220.0
YYD1_k127_6157330_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000004526 169.0
YYD1_k127_6157330_4 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.00000000000000000000000000000003257 143.0
YYD1_k127_6157330_5 PTS system fructose IIA component K02793 - 2.7.1.191 0.0000000000000000000000000000007717 138.0
YYD1_k127_6157330_6 PTS system sorbose subfamily IIB component K02794 - 2.7.1.191 0.000000000000000000000000002673 124.0
YYD1_k127_6157330_7 PTS system sorbose-specific iic component K02795 - - 0.000000000000000000002978 107.0
YYD1_k127_6157330_8 TIGRFAM phosphocarrier, HPr family K11189 - - 0.000000000000000000009704 104.0
YYD1_k127_6159086_0 carbohydrate binding - - - 0.0000000000000000000000005911 105.0
YYD1_k127_6159086_1 Belongs to the enoyl-CoA hydratase isomerase family K07511 - 4.2.1.17 0.000000000000026 89.0
YYD1_k127_6159086_2 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000007805 87.0
YYD1_k127_6159086_3 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.0000001251 66.0
YYD1_k127_6160024_0 PFAM Aldehyde dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 603.0
YYD1_k127_6160024_1 PFAM Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008631 418.0
YYD1_k127_6160024_2 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 350.0
YYD1_k127_6160024_3 PFAM ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 286.0
YYD1_k127_6160024_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 302.0
YYD1_k127_6160024_5 Amino acid amide ABC transporter ATP-binding protein 1, HAAT family K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002803 278.0
YYD1_k127_6180209_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 7.596e-249 779.0
YYD1_k127_6180209_1 Domain of unknown function (DUF4143) K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 397.0
YYD1_k127_6180209_2 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000001535 215.0
YYD1_k127_6180209_3 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000000000000000002218 200.0
YYD1_k127_6180209_4 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) - - - 0.000000000000000000000000000000000000000453 166.0
YYD1_k127_6180209_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000001758 155.0
YYD1_k127_6180209_6 TPM domain K06872 - - 0.0000000000000000000000000005561 124.0
YYD1_k127_6180209_7 nucleotidyltransferase activity - - - 0.0000000000000000000000519 111.0
YYD1_k127_6180209_8 Cytochrome c554 and c-prime - - - 0.00000000002788 70.0
YYD1_k127_6183818_0 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007888 598.0
YYD1_k127_6183818_1 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007844 558.0
YYD1_k127_6183818_2 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007739 299.0
YYD1_k127_6183818_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000001311 258.0
YYD1_k127_6183818_4 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000001787 208.0
YYD1_k127_6183818_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000001049 173.0
YYD1_k127_6183818_6 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000387 149.0
YYD1_k127_6183818_7 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000001755 145.0
YYD1_k127_6183818_8 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000007745 153.0
YYD1_k127_6183818_9 Uncharacterized protein conserved in bacteria (DUF2135) - - - 0.00000004963 66.0
YYD1_k127_6185121_0 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 458.0
YYD1_k127_6185121_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006029 331.0
YYD1_k127_6185121_2 Glyoxalase-like domain K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000009396 173.0
YYD1_k127_6185121_3 PFAM phosphate transporter K03306 - - 0.0000000005776 61.0
YYD1_k127_6194246_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000004032 145.0
YYD1_k127_6194246_1 regulation of response to stimulus K02014,K13730 - - 0.000000000008151 79.0
YYD1_k127_6194246_2 cAMP biosynthetic process - - - 0.000000169 63.0
YYD1_k127_6194246_3 TIGRFAM peptidyl-prolyl cis-trans isomerase, EpsD family - - - 0.00000087 61.0
YYD1_k127_6202460_0 Rubredoxin-type Fe(Cys)4 protein - - - 0.0000000000000000000000000000000000000000000000000000002051 198.0
YYD1_k127_6202460_1 PFAM Cache - - - 0.00000000000000000000000000000000000002541 150.0
YYD1_k127_6202460_2 - - - - 0.0009762 49.0
YYD1_k127_6222192_0 AlkA N-terminal domain K13529,K13530 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 315.0
YYD1_k127_6222192_1 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000002093 218.0
YYD1_k127_6222192_2 - - - - 0.000000000000000000000000000000000000000000000000001229 199.0
YYD1_k127_6222192_3 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000713 174.0
YYD1_k127_6222192_4 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000134 173.0
YYD1_k127_6222192_5 Cupin 2, conserved barrel domain protein - - - 0.0000000000000002856 85.0
YYD1_k127_6222192_6 Domain of Unknown function (DUF542) K07322 - - 0.000000000000001587 78.0
YYD1_k127_6222192_7 Cytochrome C and Quinol oxidase polypeptide I K15862 - 1.9.3.1 0.00000000000000242 82.0
YYD1_k127_6283348_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1068.0
YYD1_k127_6283348_1 Sugar (and other) transporter K03446 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 631.0
YYD1_k127_6283348_10 GYD domain - - - 0.000000000000000000000000000000000001886 143.0
YYD1_k127_6283348_11 Cys-tRNA(Pro) hydrolase activity K19055 - - 0.0000000000000000000000000000000001979 141.0
YYD1_k127_6283348_12 Amidohydrolase - - - 0.00000000000000000000000000000001254 146.0
YYD1_k127_6283348_13 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18306 - - 0.0000000000000000000000000000008168 137.0
YYD1_k127_6283348_14 PFAM regulatory protein TetR - - - 0.00000000000000000000001108 109.0
YYD1_k127_6283348_15 Histidine kinase - - - 0.0000000000000000000002689 98.0
YYD1_k127_6283348_16 Thioesterase superfamily K02614 - - 0.000000001104 70.0
YYD1_k127_6283348_17 PFAM NHL repeat containing protein - - - 0.0000003407 57.0
YYD1_k127_6283348_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 473.0
YYD1_k127_6283348_3 reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 331.0
YYD1_k127_6283348_4 HlyD membrane-fusion protein of T1SS K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005254 287.0
YYD1_k127_6283348_5 Major Facilitator Superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001988 299.0
YYD1_k127_6283348_6 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000000000000000003439 224.0
YYD1_k127_6283348_7 lysyl-tRNA synthetase K04568 - - 0.0000000000000000000000000000000000000000000000000000000000007298 223.0
YYD1_k127_6283348_8 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) - - - 0.00000000000000000000000000000000000000000000000000000692 211.0
YYD1_k127_6283348_9 Bacterial transferase hexapeptide (six repeats) - - - 0.00000000000000000000000000000000000000000000000002347 184.0
YYD1_k127_6295474_0 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 458.0
YYD1_k127_6295474_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 419.0
YYD1_k127_6295474_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 300.0
YYD1_k127_6295474_3 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000001311 235.0
YYD1_k127_6295474_4 SMART Elongator protein 3 MiaB NifB K22227 - - 0.0001011 44.0
YYD1_k127_633480_0 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000002579 229.0
YYD1_k127_633480_1 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000008 186.0
YYD1_k127_633480_2 RDD family - - - 0.0000000000000000000000002672 111.0
YYD1_k127_6372781_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005564 385.0
YYD1_k127_6372781_1 - - - - 0.0000000000000000000000000000000000000000000000000000008873 201.0
YYD1_k127_6372781_2 Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide - - - 0.000000000000000000000000000000000000000000007482 185.0
YYD1_k127_6372781_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000004318 169.0
YYD1_k127_6372781_4 PFAM thioesterase superfamily K02614 - - 0.000000000000000000000000000000000003712 149.0
YYD1_k127_6372781_5 Cupin 2 conserved barrel domain - - - 0.00000000000000002297 83.0
YYD1_k127_6372781_6 SNARE associated Golgi protein - - - 0.0006693 43.0
YYD1_k127_6376719_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 4.099e-196 621.0
YYD1_k127_6376719_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 584.0
YYD1_k127_6376719_2 PFAM Rhomboid family K07059 - - 0.00000000000000000000000000000000000000000000000000000000000000000005829 238.0
YYD1_k127_6376719_3 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000005128 223.0
YYD1_k127_6376719_4 HD domain - - - 0.0000000000000000000000000000000000000000000001933 192.0
YYD1_k127_6376719_5 Universal stress protein K06149 - - 0.0000000000000000000000000000000005408 139.0
YYD1_k127_6376719_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000007632 116.0
YYD1_k127_6376719_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03832 - - 0.0000000000000002415 90.0
YYD1_k127_6376719_8 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000001774 74.0
YYD1_k127_6391002_0 Radical SAM K01843 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 453.0
YYD1_k127_6391002_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009368 317.0
YYD1_k127_6391002_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 317.0
YYD1_k127_6391002_3 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.000000000000000000000000000000000000000000000002147 196.0
YYD1_k127_6391002_4 DNA-binding helix-turn-helix protein - - - 0.00000000000000000000000000000000002008 141.0
YYD1_k127_6391002_5 acetyltransferase K18815 - 2.3.1.82 0.000000000000000000000000000000002958 141.0
YYD1_k127_6391002_6 Transcription factor zinc-finger K09981 - - 0.00000000000000000000000000003396 119.0
YYD1_k127_6391002_7 Belongs to the helicase family. UvrD subfamily - - - 0.0007856 46.0
YYD1_k127_6399421_0 Conserved carboxylase domain K01958 - 6.4.1.1 2.269e-220 724.0
YYD1_k127_6399421_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01959 - 6.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 509.0
YYD1_k127_6399421_10 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000002785 176.0
YYD1_k127_6399421_11 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.0000000000000000000000000000000000000000001872 164.0
YYD1_k127_6399421_12 Including oxidative damage repair enzymes - - - 0.00000000000000000000000000000006127 143.0
YYD1_k127_6399421_13 protocatechuate 3,4-dioxygenase activity K03286,K03640,K07275 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000006103 121.0
YYD1_k127_6399421_14 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000001191 126.0
YYD1_k127_6399421_15 thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000239 98.0
YYD1_k127_6399421_2 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 503.0
YYD1_k127_6399421_3 ABC transporter transmembrane region K06147,K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 500.0
YYD1_k127_6399421_4 ABC transporter transmembrane region K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 410.0
YYD1_k127_6399421_5 PFAM SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 392.0
YYD1_k127_6399421_6 metal-dependent phosphohydrolase HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007707 357.0
YYD1_k127_6399421_7 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003304 281.0
YYD1_k127_6399421_8 oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002849 284.0
YYD1_k127_6399421_9 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006597 271.0
YYD1_k127_6419639_0 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007637 448.0
YYD1_k127_6419639_1 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 391.0
YYD1_k127_6419639_2 PFAM ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 290.0
YYD1_k127_6419639_3 Amino acid amide ABC transporter ATP-binding protein 1, HAAT family K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000002098 250.0
YYD1_k127_6419639_4 Branched-chain amino acid transport system / permease component K01997,K01998 - - 0.000000000000000000000000000000000000000000000007577 179.0
YYD1_k127_642503_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 2.833e-195 623.0
YYD1_k127_642503_1 PFAM Cupin 2 conserved barrel domain protein - - - 0.00000000000000000000000003207 114.0
YYD1_k127_6473025_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 564.0
YYD1_k127_6473025_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 490.0
YYD1_k127_6473025_10 VanZ like family - - - 0.00000001276 63.0
YYD1_k127_6473025_2 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006723 447.0
YYD1_k127_6473025_3 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 443.0
YYD1_k127_6473025_4 PFAM NAD-dependent epimerase dehydratase K01784,K02473 - 5.1.3.2,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 390.0
YYD1_k127_6473025_5 Phosphoadenosine phosphosulfate reductase family K21947 - 2.8.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 315.0
YYD1_k127_6473025_6 Electron transfer flavoprotein alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 316.0
YYD1_k127_6473025_7 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 290.0
YYD1_k127_6473025_8 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA K07442 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016426,GO:0016429,GO:0016740,GO:0016741,GO:0030488,GO:0031515,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.219,2.1.1.220 0.00000000000000000000000000000000000000000000000000000000000000000000000000003221 267.0
YYD1_k127_6473025_9 WxcM-like, C-terminal K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000001127 250.0
YYD1_k127_6513311_0 Belongs to the NifD NifK NifE NifN family K02587 - - 0.0 1472.0
YYD1_k127_6513311_1 Nitrogenase molybdenum-iron protein alpha chain K02586 - 1.18.6.1 9.217e-293 902.0
YYD1_k127_6513311_10 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) K05951 - 2.4.2.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 340.0
YYD1_k127_6513311_11 PFAM Sulphate transporter K03321 - - 0.000000000000000000000000000000000000000000000000000000000000000000001121 265.0
YYD1_k127_6513311_12 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000007467 229.0
YYD1_k127_6513311_13 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000002351 162.0
YYD1_k127_6513311_14 Dinitrogenase iron-molybdenum cofactor biosynthesis protein K02596 - - 0.00000000000000000000000000000000000655 160.0
YYD1_k127_6513311_15 Histidine kinase - - - 0.00000000000000000187 87.0
YYD1_k127_6513311_16 PD-(D/E)XK nuclease superfamily - - - 0.0002534 53.0
YYD1_k127_6513311_2 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 9.196e-277 857.0
YYD1_k127_6513311_3 The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components the iron protein and the molybdenum-iron protein K02588 - 1.18.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 525.0
YYD1_k127_6513311_4 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 522.0
YYD1_k127_6513311_5 Heavy metal translocating P-type atpase K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 507.0
YYD1_k127_6513311_6 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 393.0
YYD1_k127_6513311_7 PFAM Pyruvate carboxyltransferase K02594 - 2.3.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005088 391.0
YYD1_k127_6513311_8 Major facilitator Superfamily K08223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 385.0
YYD1_k127_6513311_9 Belongs to the NifD NifK NifE NifN family K02592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 361.0
YYD1_k127_6562665_0 - - - - 4.649e-247 783.0
YYD1_k127_6562665_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 372.0
YYD1_k127_6562665_2 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 0.00000000000005811 79.0
YYD1_k127_6562665_3 HAMP domain - - - 0.000000000006014 66.0
YYD1_k127_6562665_4 His Kinase A (phosphoacceptor) domain - - - 0.0000007538 59.0
YYD1_k127_656476_0 Elongation factor Tu GTP binding domain K00956 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 614.0
YYD1_k127_656476_1 Nitrite and sulphite reductase 4Fe-4S K00366,K00381,K00392 - 1.7.7.1,1.8.1.2,1.8.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 429.0
YYD1_k127_656476_2 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 348.0
YYD1_k127_656476_3 PFAM phosphoadenosine phosphosulfate reductase K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.000000000000172 70.0
YYD1_k127_6603829_0 Belongs to the MurCDEF family K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 427.0
YYD1_k127_6603829_1 PFAM Beta-lactamase - - - 0.00000000000000007842 86.0
YYD1_k127_6603829_2 Beta-lactamase - - - 0.00000272 54.0
YYD1_k127_6603829_3 cAMP biosynthetic process - - - 0.00003471 55.0
YYD1_k127_6603829_4 von Willebrand factor (vWF) type A domain - - - 0.0001884 53.0
YYD1_k127_6612972_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 6.664e-260 812.0
YYD1_k127_6612972_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 565.0
YYD1_k127_6612972_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006938 325.0
YYD1_k127_6612972_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.00000000000000000000000000000000000000000000000000000000001922 209.0
YYD1_k127_6612972_4 riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000005063 206.0
YYD1_k127_6612972_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000003847 123.0
YYD1_k127_6612972_6 PFAM CMP dCMP deaminase zinc-binding K01493 - 3.5.4.12 0.00000000000008062 73.0
YYD1_k127_663425_0 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 531.0
YYD1_k127_663425_1 Histidine kinase HAMP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 415.0
YYD1_k127_663425_2 Fibronectin type III domain protein - - - 0.0000000007133 72.0
YYD1_k127_663425_3 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000003057 63.0
YYD1_k127_663425_4 NHL repeat - - - 0.00001229 58.0
YYD1_k127_6645283_0 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000434 519.0
YYD1_k127_6645283_1 phosphoenolpyruvate-protein phosphotransferase activity - - - 0.00000000000000000000000000000000000000000000000000000003567 205.0
YYD1_k127_6645283_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000007388 103.0
YYD1_k127_6645283_3 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0008264 43.0
YYD1_k127_6665630_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 607.0
YYD1_k127_6665630_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004972 460.0
YYD1_k127_6665630_10 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000000000000000000000000000000000000000138 194.0
YYD1_k127_6665630_11 PFAM acylphosphatase K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000000000000000006792 97.0
YYD1_k127_6665630_12 CAAX protease self-immunity K07052 - - 0.00000000001206 74.0
YYD1_k127_6665630_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 375.0
YYD1_k127_6665630_3 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 367.0
YYD1_k127_6665630_4 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012,K16180 - 2.8.1.6,5.4.99.58 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004448 344.0
YYD1_k127_6665630_5 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 354.0
YYD1_k127_6665630_6 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 323.0
YYD1_k127_6665630_7 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833 - 2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001407 271.0
YYD1_k127_6665630_8 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000006914 268.0
YYD1_k127_6665630_9 PFAM Haloacid dehalogenase domain protein hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000003538 193.0
YYD1_k127_6804176_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 4.415e-263 853.0
YYD1_k127_6804176_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002949 426.0
YYD1_k127_6804176_10 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000008398 171.0
YYD1_k127_6804176_11 Major Facilitator - - - 0.00000000000000000000000000000002626 146.0
YYD1_k127_6804176_12 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000002162 77.0
YYD1_k127_6804176_13 protein involved in outer membrane biogenesis K07289 - - 0.0000000006391 73.0
YYD1_k127_6804176_14 Pfam:DUF1049 - - - 0.000122 50.0
YYD1_k127_6804176_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 442.0
YYD1_k127_6804176_3 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007544 417.0
YYD1_k127_6804176_4 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 396.0
YYD1_k127_6804176_5 Dimerisation domain of Zinc Transporter K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001642 278.0
YYD1_k127_6804176_6 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000001386 260.0
YYD1_k127_6804176_7 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000005204 234.0
YYD1_k127_6804176_8 PFAM Isochorismatase K08281 - 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000901 208.0
YYD1_k127_6804176_9 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000006979 175.0
YYD1_k127_6809562_0 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000728 320.0
YYD1_k127_6809562_1 Thiol-disulfide oxidoreductase which is required in disulfide reduction during c-type cytochrome synthesis. May accept reducing equivalents from CcdA, leading to breakage of disulfide bonds in apocytochrome c - GO:0008150,GO:0009987,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043933,GO:0044085,GO:0065003,GO:0071840 - 0.00000000001145 76.0
YYD1_k127_6809562_2 glycerophosphoryl diester phosphodiesterase K01113,K01126 - 3.1.3.1,3.1.4.46 0.0000004591 56.0
YYD1_k127_683441_0 Arginosuccinate synthase K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005204 601.0
YYD1_k127_683441_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 560.0
YYD1_k127_683441_2 Argininosuccinate lyase C-terminal K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 470.0
YYD1_k127_683441_3 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 430.0
YYD1_k127_683441_4 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 401.0
YYD1_k127_683441_5 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 353.0
YYD1_k127_683441_6 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 334.0
YYD1_k127_683441_7 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000001448 247.0
YYD1_k127_683441_8 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000001048 240.0
YYD1_k127_683441_9 Histidine kinase K02668,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000003075 226.0
YYD1_k127_6865142_0 Aminotransferase class-V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005677 453.0
YYD1_k127_6865142_1 TIGRFAM FeS cluster assembly scaffold protein NifU K04488 - - 0.000000000000000000000000000000000000000000000001666 193.0
YYD1_k127_6865142_2 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00003175 51.0
YYD1_k127_71569_0 type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000807 498.0
YYD1_k127_71569_1 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000006833 174.0
YYD1_k127_71569_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000004489 84.0
YYD1_k127_71569_3 - - - - 0.000000006336 59.0
YYD1_k127_71569_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000002007 55.0
YYD1_k127_717263_0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit - - - 5.947e-218 706.0
YYD1_k127_717263_1 Ammonium Transporter Family K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003034 567.0
YYD1_k127_717263_10 Phosphotransferase enzyme family - - - 0.00000000003795 77.0
YYD1_k127_717263_2 CO dehydrogenase acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005405 381.0
YYD1_k127_717263_3 PFAM ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 348.0
YYD1_k127_717263_4 Patatin-like phospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008874 254.0
YYD1_k127_717263_5 CO dehydrogenase acetyl-CoA synthase K00194 - 2.1.1.245 0.0000000000000000000000000000000000000000000000000000000001361 228.0
YYD1_k127_717263_6 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000000000000000000000000000000000000009622 223.0
YYD1_k127_717263_7 PFAM ABC transporter K01990,K02193,K09697 - 3.6.3.41,3.6.3.7 0.000000000000000000000000000000000000000000000000000006313 195.0
YYD1_k127_717263_8 GTP binding K06942 GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030234,GO:0043021,GO:0043022,GO:0043023,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0098772 - 0.000000000000000000000000000000000000000003335 175.0
YYD1_k127_717263_9 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.000000000000000000000000000000000001723 149.0
YYD1_k127_719478_0 Beta Propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 529.0
YYD1_k127_719478_1 penicillin-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003445 280.0
YYD1_k127_719478_10 Thioesterase K01075 - 3.1.2.23 0.00000000000000000004028 104.0
YYD1_k127_719478_11 Belongs to the Fur family K03711 - - 0.00000000000000005181 88.0
YYD1_k127_719478_12 - - - - 0.000000000000003404 80.0
YYD1_k127_719478_13 cellulose binding - - - 0.0000000004035 64.0
YYD1_k127_719478_2 PFAM Rubrerythrin - GO:0003674,GO:0003824,GO:0004601,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016692,GO:0022900,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000000000000000000000000000000000000000000000000000000000000002065 234.0
YYD1_k127_719478_3 AAA domain, putative AbiEii toxin, Type IV TA system K09817 - - 0.00000000000000000000000000000000000000000000000000000000002216 228.0
YYD1_k127_719478_4 Zinc-uptake complex component A periplasmic K09815 - - 0.0000000000000000000000000000000000000000000000000000000002863 220.0
YYD1_k127_719478_5 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000000000000000001229 216.0
YYD1_k127_719478_6 C4-dicarboxylate ABC transporter permease - - - 0.00000000000000000000000000000000000002565 162.0
YYD1_k127_719478_7 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000000000000000001093 151.0
YYD1_k127_719478_8 - - - - 0.000000000000000000000000002748 116.0
YYD1_k127_719478_9 Tellurite resistance protein TehB - - - 0.0000000000000000000000005788 113.0
YYD1_k127_722136_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 530.0
YYD1_k127_722136_1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 502.0
YYD1_k127_722136_10 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.00000000000000000000000000000000000969 140.0
YYD1_k127_722136_11 C4-type zinc ribbon domain K07164 - - 0.0000000000000000000000000000000004213 151.0
YYD1_k127_722136_12 Reverse transcriptase-like K03469,K06864,K22316 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006401,GO:0006725,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016891,GO:0016893,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0032296,GO:0033013,GO:0033014,GO:0034641,GO:0034655,GO:0042364,GO:0042578,GO:0043170,GO:0043755,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046700,GO:0051186,GO:0051188,GO:0071667,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 3.1.26.4,3.1.3.73 0.00000000000000000000000000002551 129.0
YYD1_k127_722136_14 - - - - 0.00001158 48.0
YYD1_k127_722136_15 Essential cell division protein - - - 0.0004875 53.0
YYD1_k127_722136_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 445.0
YYD1_k127_722136_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 411.0
YYD1_k127_722136_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008764,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005481 359.0
YYD1_k127_722136_5 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 345.0
YYD1_k127_722136_6 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002991 316.0
YYD1_k127_722136_7 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007982 278.0
YYD1_k127_722136_8 TIGRFAM dinuclear metal center protein, YbgI SA1388 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001746 254.0
YYD1_k127_722136_9 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000002329 181.0
YYD1_k127_751090_0 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008654 506.0
YYD1_k127_751090_1 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 467.0
YYD1_k127_787826_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 596.0
YYD1_k127_787826_1 response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000323 279.0
YYD1_k127_787826_2 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000006215 63.0
YYD1_k127_823817_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006478 456.0
YYD1_k127_823817_1 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 441.0
YYD1_k127_823817_10 PFAM cytochrome c class III - - - 0.00000000000002464 77.0
YYD1_k127_823817_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 349.0
YYD1_k127_823817_3 Pfam:UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000000008156 222.0
YYD1_k127_823817_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000203 217.0
YYD1_k127_823817_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000001092 162.0
YYD1_k127_823817_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000005081 143.0
YYD1_k127_823817_7 RmuC family K09760 - - 0.000000000000000000000000000000000003985 151.0
YYD1_k127_823817_8 thioesterase K07107 - - 0.0000000000000000000000000824 125.0
YYD1_k127_823817_9 Peptidase family U32 C-terminal domain K08303 - - 0.000000000000000000005028 105.0
YYD1_k127_83808_0 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237 359.0
YYD1_k127_83808_1 pfam abc K02006 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001067 274.0
YYD1_k127_83808_2 PFAM cobalamin (vitamin B12) biosynthesis CbiM K02007 - - 0.0000000000000000000000000000000000000000000000000000000000000000002095 236.0
YYD1_k127_83808_3 nickel-responsive regulator K07722 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000001534 191.0
YYD1_k127_83808_4 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000000000000004741 114.0
YYD1_k127_83808_5 TIGRFAM cobalt ABC transporter, inner membrane subunit CbiQ K02008 - - 0.00000000000000000000009656 112.0
YYD1_k127_83808_6 PDGLE domain K02009 - - 0.0000000000000002845 91.0
YYD1_k127_880156_0 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 483.0
YYD1_k127_880156_1 UvrD/REP helicase N-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 443.0
YYD1_k127_880156_2 FMN reductase (NADPH) activity - - - 0.0000000000001128 76.0
YYD1_k127_880156_3 cellulase activity K01637,K01652 - 2.2.1.6,4.1.3.1 0.0000006071 62.0
YYD1_k127_887176_0 response to heat K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 486.0
YYD1_k127_887176_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 474.0
YYD1_k127_887176_10 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000001741 93.0
YYD1_k127_887176_2 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 434.0
YYD1_k127_887176_3 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000001303 193.0
YYD1_k127_887176_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000001962 183.0
YYD1_k127_887176_5 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000006765 150.0
YYD1_k127_887176_6 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000000006215 147.0
YYD1_k127_887176_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000001357 144.0
YYD1_k127_887176_8 Could be involved in septation K06412 - - 0.000000000000000000000000000142 123.0
YYD1_k127_887176_9 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000001805 106.0
YYD1_k127_900150_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 5.666e-223 716.0
YYD1_k127_900150_1 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006021 447.0
YYD1_k127_900150_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 297.0
YYD1_k127_900150_3 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000008204 255.0
YYD1_k127_900150_4 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000007099 222.0
YYD1_k127_900150_5 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000002154 188.0
YYD1_k127_900150_6 Divergent polysaccharide deacetylase K09798 - - 0.000000000000000000000000000000004506 148.0
YYD1_k127_900150_7 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000001401 76.0
YYD1_k127_900150_8 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.00000000000003029 82.0
YYD1_k127_900150_9 Flagellar rod assembly protein muramidase FlgJ K02395,K08259,K08309,K21472 - 3.4.24.75 0.000000000004735 79.0
YYD1_k127_904768_0 Telomere recombination K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 628.0
YYD1_k127_904768_1 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 436.0
YYD1_k127_904768_10 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000265 84.0
YYD1_k127_904768_11 Protein of unknown function, DUF393 - - - 0.00000000007888 75.0
YYD1_k127_904768_2 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00437,K00533 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.12.2.1,1.12.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 419.0
YYD1_k127_904768_3 AIR synthase related protein, C-terminal domain K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 344.0
YYD1_k127_904768_4 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282,K18008 - 1.12.2.1,1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 330.0
YYD1_k127_904768_5 Molybdopterin oxidoreductase Fe4S4 domain K00370 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000006269 255.0
YYD1_k127_904768_6 Hydrogenase accessory protein HypB K03189,K04652 - - 0.000000000000000000000000000000000000000000000000000000182 213.0
YYD1_k127_904768_7 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000419 203.0
YYD1_k127_904768_8 hydrogen uptake protein K03605 - - 0.0000000000000000000000009709 110.0
YYD1_k127_904768_9 HupF/HypC family K04653 - - 0.000000000000000171 82.0
YYD1_k127_918982_0 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 539.0
YYD1_k127_918982_1 two component, sigma54 specific, transcriptional regulator, Fis family K07713,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 357.0
YYD1_k127_918982_2 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000002995 76.0
YYD1_k127_925250_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000008842 226.0
YYD1_k127_925250_1 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.00000000000000000000000000000000002921 138.0
YYD1_k127_925250_2 Dehydratase small subunit K13920 - 4.2.1.28 0.0000000000000000000000000000001057 134.0
YYD1_k127_925250_3 Helix-turn-helix domain - - - 0.0000000000000000000000537 107.0
YYD1_k127_925250_4 dehydratase medium subunit K13919 - 4.2.1.28 0.0000000000009678 74.0
YYD1_k127_945028_0 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 317.0
YYD1_k127_945028_1 Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 303.0
YYD1_k127_945028_2 PFAM glycine cleavage H-protein - - - 0.0000000000000000000000000001846 124.0
YYD1_k127_945028_3 PFAM response regulator receiver K07713 - - 0.00000000000000000000000004088 110.0
YYD1_k127_945028_4 phosphorelay signal transduction system K02437 - - 0.0000000000000000000004327 110.0
YYD1_k127_963536_0 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007867 387.0
YYD1_k127_963536_1 PFAM LmbE family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000002168 235.0
YYD1_k127_963536_2 Pfam:DUF162 K18929 - - 0.00000000000000000000000000000000000000000000000193 176.0
YYD1_k127_963536_3 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000002823 180.0
YYD1_k127_963536_4 LUD domain K00782 - - 0.00000000000000000000000000000000000000275 158.0
YYD1_k127_963536_5 - - - - 0.0000006001 55.0