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Overview

ID MAG04625
Name YYD1_bin.3
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order CACIAM-22H2
Family CACIAM-22H2
Genus DATFES01
Species DATFES01 sp035457725
Assembly information
Completeness (%) 96.42
Contamination (%) 1.18
GC content (%) 65.0
N50 (bp) 15,197
Genome size (bp) 3,772,620

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3685

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1016687_0 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 409.0
YYD1_k127_1016687_1 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000004977 211.0
YYD1_k127_1016687_2 Adenylate cyclase - - - 0.0000000000000000000000001893 115.0
YYD1_k127_1028442_0 adenosylmethionine-8-amino-7-oxononanoate transaminase activity K00822 - 2.6.1.18 2.282e-216 681.0
YYD1_k127_1028442_1 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 566.0
YYD1_k127_1028442_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 417.0
YYD1_k127_1028442_3 Cysteine-rich CWC - - - 0.000000004009 65.0
YYD1_k127_1034545_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter - - - 7.559e-310 976.0
YYD1_k127_1034545_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 1.193e-259 810.0
YYD1_k127_1034545_2 Predicted integral membrane protein (DUF2189) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000012 291.0
YYD1_k127_1034545_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004552 274.0
YYD1_k127_1034545_4 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.00000000000000000000000000000000000000000000000000000000002182 210.0
YYD1_k127_1034545_5 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000006252 192.0
YYD1_k127_1034545_6 - - - - 0.00000003359 62.0
YYD1_k127_1040080_0 Protein of unknown function (DUF1800) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005088 404.0
YYD1_k127_1040080_1 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 381.0
YYD1_k127_1040080_2 GTP cyclohydrolase K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 308.0
YYD1_k127_1040080_3 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000414 249.0
YYD1_k127_1083191_0 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 9.09e-241 753.0
YYD1_k127_1083191_1 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 1.926e-224 704.0
YYD1_k127_1083191_10 Protein of unknown function, DUF599 - - - 0.0000000000000000000000000000000000000000000000000000000002944 212.0
YYD1_k127_1083191_11 Haem-degrading - - - 0.000000000000000000000000000000000000000000297 163.0
YYD1_k127_1083191_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 1.295e-218 691.0
YYD1_k127_1083191_3 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006769 593.0
YYD1_k127_1083191_4 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 570.0
YYD1_k127_1083191_5 Cys/Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 470.0
YYD1_k127_1083191_6 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 407.0
YYD1_k127_1083191_7 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007099 342.0
YYD1_k127_1083191_8 of the double-stranded beta helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001308 273.0
YYD1_k127_1083191_9 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000445 229.0
YYD1_k127_1133180_0 Creatinase/Prolidase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 580.0
YYD1_k127_1133180_1 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 572.0
YYD1_k127_1133180_2 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 488.0
YYD1_k127_1133180_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 441.0
YYD1_k127_1133180_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 395.0
YYD1_k127_1133180_5 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000705 382.0
YYD1_k127_1133180_6 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000464 136.0
YYD1_k127_1133180_7 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000001005 123.0
YYD1_k127_1133180_8 Domain of unknown function (DUF4169) - - - 0.000000114 55.0
YYD1_k127_1175958_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 580.0
YYD1_k127_1175958_1 Belongs to the peptidase S1C family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 535.0
YYD1_k127_1175958_2 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006468 283.0
YYD1_k127_1175958_3 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000000004259 199.0
YYD1_k127_1175958_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000001706 123.0
YYD1_k127_1179982_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 GO:0003674,GO:0003824,GO:0004474,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044464,GO:0046487,GO:0046912,GO:0071704 2.3.3.9 1.248e-242 763.0
YYD1_k127_1179982_1 Adenylate cyclase - - - 7.667e-232 732.0
YYD1_k127_1179982_2 HpcH/HpaI aldolase/citrate lyase family K08691 - 4.1.3.24,4.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 477.0
YYD1_k127_1179982_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 454.0
YYD1_k127_1179982_4 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004489 392.0
YYD1_k127_1179982_5 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 400.0
YYD1_k127_1179982_6 Esterase-like activity of phytase - - - 0.000000000000000000000000000000000000000000000000000000000002443 221.0
YYD1_k127_1179982_7 - - - - 0.0000000000000000000000000000000000000000000000000000007214 214.0
YYD1_k127_1179982_8 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000007906 135.0
YYD1_k127_1179982_9 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000000000000000000001297 136.0
YYD1_k127_1212109_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 4.763e-242 758.0
YYD1_k127_1212109_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 3.249e-210 660.0
YYD1_k127_1212109_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 441.0
YYD1_k127_1212109_3 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 415.0
YYD1_k127_1212109_4 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 392.0
YYD1_k127_1212109_5 cytochrome K08738 - - 0.00000000000000000002127 98.0
YYD1_k127_1212109_6 PFAM Bacterial protein of - - - 0.000000000000000001503 93.0
YYD1_k127_1231891_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 433.0
YYD1_k127_1231891_1 Succinylglutamate desuccinylase aspartoacylase family protein - - - 0.0000000000000000000000000000000000000000007078 163.0
YYD1_k127_1231891_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000007687 154.0
YYD1_k127_1231891_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K16066 - 1.1.1.381 0.000000000000000000000000000000004074 129.0
YYD1_k127_124418_0 heavy metal translocating P-type ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 1.297e-252 804.0
YYD1_k127_124418_1 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 512.0
YYD1_k127_124418_10 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000005828 228.0
YYD1_k127_124418_11 MerR, DNA binding K19591,K19592 - - 0.0000000000000000000000000000000000000000000000007619 179.0
YYD1_k127_124418_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 494.0
YYD1_k127_124418_3 Competence protein K02238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008666 462.0
YYD1_k127_124418_4 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003638 437.0
YYD1_k127_124418_5 TOBE domain K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 422.0
YYD1_k127_124418_6 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 410.0
YYD1_k127_124418_7 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 325.0
YYD1_k127_124418_8 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 319.0
YYD1_k127_124418_9 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 319.0
YYD1_k127_1245706_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1272.0
YYD1_k127_1245706_1 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 5.308e-224 700.0
YYD1_k127_1245706_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000005906 226.0
YYD1_k127_1245706_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000002091 202.0
YYD1_k127_1245706_4 TatD related DNase K03424 - - 0.0000000000000000000000006131 107.0
YYD1_k127_1261526_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 6.56e-302 943.0
YYD1_k127_1261526_1 glutamine synthetase K01915 - 6.3.1.2 3.112e-251 784.0
YYD1_k127_1261526_10 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002792 256.0
YYD1_k127_1261526_11 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000004729 226.0
YYD1_k127_1261526_12 Belongs to the P(II) protein family K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.00000000000000000000000000000000000000000000000000000000001998 210.0
YYD1_k127_1261526_13 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000000000000004692 211.0
YYD1_k127_1261526_14 PFAM CBS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000001926 207.0
YYD1_k127_1261526_15 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000000000000000005184 202.0
YYD1_k127_1261526_16 Thioesterase superfamily K10806 - - 0.00000000000000000000000000000000000000000000000000002547 190.0
YYD1_k127_1261526_17 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000000000000001046 183.0
YYD1_k127_1261526_18 COG1335 Amidases related to nicotinamidase - - - 0.0000000000000000000000000000000000000002235 158.0
YYD1_k127_1261526_19 COG1522 Transcriptional regulators - - - 0.0000000000000000000000000000000006096 132.0
YYD1_k127_1261526_2 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 593.0
YYD1_k127_1261526_21 - - - - 0.0000000000002365 78.0
YYD1_k127_1261526_3 Belongs to the DEAD box helicase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 590.0
YYD1_k127_1261526_4 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 436.0
YYD1_k127_1261526_5 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 411.0
YYD1_k127_1261526_6 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 352.0
YYD1_k127_1261526_7 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 350.0
YYD1_k127_1261526_8 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 325.0
YYD1_k127_1261526_9 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 289.0
YYD1_k127_126685_0 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 557.0
YYD1_k127_126685_1 Glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009558 366.0
YYD1_k127_126685_2 Isochorismatase family K08281 - 3.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 301.0
YYD1_k127_126685_3 PFAM Methyltransferase type - - - 0.0000000000000000000000000000000000000000000000000000000000000000006249 240.0
YYD1_k127_126685_4 PFAM YdjC family protein K03478 - 3.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000007266 238.0
YYD1_k127_126685_5 associated with various cellular activities K03924 - - 0.000000000000000000000000003354 128.0
YYD1_k127_1290560_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000004703 239.0
YYD1_k127_1290560_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000005207 186.0
YYD1_k127_1290560_2 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000002853 170.0
YYD1_k127_1290560_3 L-2-hydroxyglutarate dehydrogenase - - - 0.0000000000000000000000000000000000008302 140.0
YYD1_k127_1290560_4 PFAM thioesterase superfamily protein K07107 - - 0.0000000000000000000000002391 120.0
YYD1_k127_1290560_5 Tellurite resistance protein TerB - - - 0.00000000000004552 81.0
YYD1_k127_1290560_6 surface antigen - - - 0.0000000000002137 77.0
YYD1_k127_1290560_7 - - - - 0.00000003399 60.0
YYD1_k127_1290560_8 - - - - 0.0000006531 55.0
YYD1_k127_1290560_9 PilZ domain - - - 0.0001579 50.0
YYD1_k127_129583_0 CoA binding domain - - - 0.0 1081.0
YYD1_k127_129583_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 8.506e-279 870.0
YYD1_k127_129583_2 Tripartite tricarboxylate transporter TctA family K07793 - - 3.244e-250 783.0
YYD1_k127_129583_3 CoA-transferase family III K07544,K07749 - 2.8.3.15,2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 608.0
YYD1_k127_129583_4 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 497.0
YYD1_k127_129583_5 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 400.0
YYD1_k127_129583_6 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 304.0
YYD1_k127_129583_7 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000000000000000001124 176.0
YYD1_k127_129583_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000009402 77.0
YYD1_k127_129583_9 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000004807 61.0
YYD1_k127_1312411_0 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 323.0
YYD1_k127_1312411_1 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009574 283.0
YYD1_k127_1312411_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000008773 204.0
YYD1_k127_1312411_3 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000005578 148.0
YYD1_k127_1352925_0 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 539.0
YYD1_k127_1352925_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 398.0
YYD1_k127_1352925_2 CorA-like Mg2+ transporter protein K03284,K16074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 354.0
YYD1_k127_1352925_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001289 278.0
YYD1_k127_1352925_4 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006221 271.0
YYD1_k127_1352925_5 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000000000002627 258.0
YYD1_k127_1352925_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001833 248.0
YYD1_k127_1352925_7 glutamate--cysteine ligase K01919 - 6.3.2.2 0.00000000000000000000000000000000000000001581 156.0
YYD1_k127_1352925_8 EamA-like transporter family - - - 0.000000000000000000000000001711 115.0
YYD1_k127_1431268_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 2.602e-304 944.0
YYD1_k127_1431268_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 1.066e-226 709.0
YYD1_k127_1431268_10 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 368.0
YYD1_k127_1431268_11 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 363.0
YYD1_k127_1431268_12 ABC transporter K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 351.0
YYD1_k127_1431268_13 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 337.0
YYD1_k127_1431268_14 ATPases associated with a variety of cellular activities K11963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 331.0
YYD1_k127_1431268_15 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 346.0
YYD1_k127_1431268_16 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 323.0
YYD1_k127_1431268_17 CobW/HypB/UreG, nucleotide-binding domain K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 327.0
YYD1_k127_1431268_18 Trap-type c4-dicarboxylate transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008005 252.0
YYD1_k127_1431268_19 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001215 259.0
YYD1_k127_1431268_2 Periplasmic binding protein domain K11959 - - 8.927e-217 679.0
YYD1_k127_1431268_20 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000001431 244.0
YYD1_k127_1431268_21 Domain of unknown function (DUF4340) - - - 0.000000000000000000000000000000000000000000000000000000000000007586 229.0
YYD1_k127_1431268_22 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.0000000000000000000000000000000000000000000000000000000001594 212.0
YYD1_k127_1431268_23 dioxygenase K03119 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000001502 216.0
YYD1_k127_1431268_24 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000000002087 174.0
YYD1_k127_1431268_25 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000000000000000000000000000000000003884 164.0
YYD1_k127_1431268_26 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000002414 160.0
YYD1_k127_1431268_27 EamA-like transporter family - - - 0.0000000000000000000000000000000000000008395 151.0
YYD1_k127_1431268_28 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.00000000000000000000000000000000000002105 149.0
YYD1_k127_1431268_29 Protein of unknown function (DUF1622) - - - 0.00000000000000000000000004479 113.0
YYD1_k127_1431268_3 ABC-type uncharacterized transport system - - - 1.299e-206 661.0
YYD1_k127_1431268_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 586.0
YYD1_k127_1431268_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003844 544.0
YYD1_k127_1431268_6 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000401 536.0
YYD1_k127_1431268_7 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 504.0
YYD1_k127_1431268_8 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 412.0
YYD1_k127_1431268_9 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 393.0
YYD1_k127_1462007_0 COG0845 Membrane-fusion protein K16300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 364.0
YYD1_k127_1462007_1 ABC transporter transmembrane region K12536,K16299 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 313.0
YYD1_k127_1462007_2 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000001681 115.0
YYD1_k127_1509423_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 568.0
YYD1_k127_1509423_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 364.0
YYD1_k127_1509423_10 Protein of unknown function (DUF1150) - - - 0.00000002535 62.0
YYD1_k127_1509423_11 Phage integrase family - - - 0.000786 45.0
YYD1_k127_1509423_2 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
YYD1_k127_1509423_3 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000001278 228.0
YYD1_k127_1509423_4 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000000000000000000001198 216.0
YYD1_k127_1509423_5 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.0000000000000000000000000000000000000000000000000000000002899 209.0
YYD1_k127_1509423_6 Phage integrase family - - - 0.00000000000000000000000000000000000006025 149.0
YYD1_k127_1509423_7 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000164 138.0
YYD1_k127_1509423_8 Protein of unknown function (FYDLN_acid) - - - 0.000000000000000000000006972 104.0
YYD1_k127_1509423_9 - K01419 - 3.4.25.2 0.000000001218 67.0
YYD1_k127_1601472_0 Aerotolerance regulator N-terminal - - - 1.109e-283 898.0
YYD1_k127_1601472_1 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 2.151e-207 666.0
YYD1_k127_1601472_10 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000000000000000000000000000000000056 214.0
YYD1_k127_1601472_11 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000002384 199.0
YYD1_k127_1601472_12 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000003307 186.0
YYD1_k127_1601472_13 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0000000000000000000000000000000000005106 149.0
YYD1_k127_1601472_14 DNA-binding transcription factor activity - - - 0.000000000000000000000000009695 119.0
YYD1_k127_1601472_15 - - - - 0.000000000006094 75.0
YYD1_k127_1601472_16 membrane - - - 0.0000004367 57.0
YYD1_k127_1601472_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467 514.0
YYD1_k127_1601472_3 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 - 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 456.0
YYD1_k127_1601472_4 poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007981 445.0
YYD1_k127_1601472_5 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009814 363.0
YYD1_k127_1601472_6 Cytochrome C1 family K00413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 322.0
YYD1_k127_1601472_7 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009543 273.0
YYD1_k127_1601472_8 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000003169 226.0
YYD1_k127_1601472_9 Protein of unknown function (DUF1285) K09986 - - 0.00000000000000000000000000000000000000000000000000000000002229 215.0
YYD1_k127_161011_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1150.0
YYD1_k127_161011_1 Belongs to the peptidase S11 family K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 332.0
YYD1_k127_161011_2 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002819 264.0
YYD1_k127_161011_3 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000000000000000243 182.0
YYD1_k127_161011_4 - - - - 0.000000000000000000000000000000000000000008511 165.0
YYD1_k127_161011_5 Phasin protein - - - 0.000000000000000000000000000000000000005151 150.0
YYD1_k127_161011_6 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.00000000000000005493 85.0
YYD1_k127_1636454_0 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 519.0
YYD1_k127_1636454_1 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 309.0
YYD1_k127_1636454_3 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.000000000000000000000000000000000000009457 152.0
YYD1_k127_1636454_4 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000002751 146.0
YYD1_k127_1636454_5 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000007299 136.0
YYD1_k127_1636454_6 HAD-hyrolase-like K01091 - 3.1.3.18 0.00004802 47.0
YYD1_k127_1641907_0 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1718.0
YYD1_k127_1641907_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.074e-235 739.0
YYD1_k127_1641907_2 Polysaccharide biosynthesis protein K13013 - - 5.081e-224 712.0
YYD1_k127_1641907_3 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 478.0
YYD1_k127_1641907_4 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 383.0
YYD1_k127_1641907_5 NYN domain - - - 0.000000000000000000000000000000000000000000000007064 183.0
YYD1_k127_1641907_6 ligase and related enzymes - - - 0.0000000000000000000000000000000000001636 157.0
YYD1_k127_1641907_7 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000005396 121.0
YYD1_k127_1641907_8 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.000000000000000001203 90.0
YYD1_k127_1645167_0 Carbamoyltransferase C-terminus K00612 - - 1.003e-307 954.0
YYD1_k127_1645167_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000006805 235.0
YYD1_k127_1645167_2 - - - - 0.000000000000000000000000008245 115.0
YYD1_k127_1645167_3 - - - - 0.000000000000641 69.0
YYD1_k127_1645529_0 FAD linked oxidases, C-terminal domain K18930 - - 0.0 1333.0
YYD1_k127_1645529_1 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 8.587e-237 748.0
YYD1_k127_1645529_10 Belongs to the hyi family K01816 - 5.3.1.22 0.00000000000000000000000000000000000000007155 153.0
YYD1_k127_1645529_2 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 1.418e-198 625.0
YYD1_k127_1645529_3 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 569.0
YYD1_k127_1645529_4 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 396.0
YYD1_k127_1645529_5 Phosphoribosyl transferase domain K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 308.0
YYD1_k127_1645529_6 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000004648 224.0
YYD1_k127_1645529_7 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000001407 186.0
YYD1_k127_1645529_8 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000003093 165.0
YYD1_k127_1645529_9 Belongs to the hyi family K01816 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0008150,GO:0008152,GO:0008903,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019752,GO:0032787,GO:0042802,GO:0042803,GO:0043436,GO:0044237,GO:0044281,GO:0046487,GO:0046983,GO:0071704 5.3.1.22 0.00000000000000000000000000000000000000001847 157.0
YYD1_k127_1648359_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 511.0
YYD1_k127_1648359_1 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008131 454.0
YYD1_k127_1648359_2 Tryptophan halogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 453.0
YYD1_k127_1648359_3 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008025 314.0
YYD1_k127_1648359_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000009399 243.0
YYD1_k127_1648359_5 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000004718 225.0
YYD1_k127_1648359_6 dehydratase - - - 0.00000000000000000000000000000000663 133.0
YYD1_k127_1648359_7 - - - - 0.00000000000000000000000009597 111.0
YYD1_k127_1648359_8 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000003934 99.0
YYD1_k127_1672798_0 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 588.0
YYD1_k127_1672798_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 557.0
YYD1_k127_1672798_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007857 357.0
YYD1_k127_1672798_3 Glycosyltransferase family 10 (fucosyltransferase) C-term - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 352.0
YYD1_k127_1672798_4 COG1560 Lauroyl myristoyl acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 329.0
YYD1_k127_1672798_5 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 301.0
YYD1_k127_1672798_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000004436 208.0
YYD1_k127_1672798_7 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.00000000000000000000000000000000000000000000000000000004656 201.0
YYD1_k127_1672798_8 - - - - 0.000000002332 64.0
YYD1_k127_16880_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 3.405e-225 702.0
YYD1_k127_16880_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 4.406e-202 641.0
YYD1_k127_16880_10 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 384.0
YYD1_k127_16880_11 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 336.0
YYD1_k127_16880_12 TRAP-type C4-dicarboxylate transport system periplasmic component K11688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 323.0
YYD1_k127_16880_13 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 312.0
YYD1_k127_16880_14 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000000007583 213.0
YYD1_k127_16880_15 membrane - - - 0.0000000000000000000000000000000000000000000000000001167 198.0
YYD1_k127_16880_16 Redoxin - - - 0.000000000000000000000000000000000000000000000000001826 184.0
YYD1_k127_16880_17 NADPH-quinone reductase (modulator of drug activity B) - - - 0.000000000000000000000000000000000000000000000001119 179.0
YYD1_k127_16880_18 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000000000000000001494 175.0
YYD1_k127_16880_19 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000002177 165.0
YYD1_k127_16880_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 5.671e-201 636.0
YYD1_k127_16880_20 membrane protein, required for colicin V production K03558 - - 0.0000000000000000000000000000000000000002763 160.0
YYD1_k127_16880_21 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000000000000000004983 140.0
YYD1_k127_16880_22 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000004118 134.0
YYD1_k127_16880_23 Protein of unknown function (DUF2937) - - - 0.0000000000001111 82.0
YYD1_k127_16880_24 Flavodoxin-like fold - - - 0.0000000000002137 75.0
YYD1_k127_16880_3 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 1.227e-197 630.0
YYD1_k127_16880_4 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 520.0
YYD1_k127_16880_5 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006667 513.0
YYD1_k127_16880_6 COG1520 FOG WD40-like repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 431.0
YYD1_k127_16880_7 malonyl CoA-acyl carrier protein transacylase K00645,K15327 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818 409.0
YYD1_k127_16880_8 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 404.0
YYD1_k127_16880_9 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 402.0
YYD1_k127_170649_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 7.059e-273 847.0
YYD1_k127_1721867_0 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004529 471.0
YYD1_k127_1721867_1 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 470.0
YYD1_k127_1721867_2 5-aminolevulinic acid synthase K00643 - 2.3.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 458.0
YYD1_k127_1735328_0 Succinyl-CoA ligase like flavodoxin domain - - - 0.0 1347.0
YYD1_k127_1735328_1 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 5.553e-253 794.0
YYD1_k127_1735328_2 ATP citrate lyase citrate-binding - - - 1.279e-224 705.0
YYD1_k127_1735328_3 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K15598 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 409.0
YYD1_k127_1735328_4 Tripartite tricarboxylate transporter family receptor K07795 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 383.0
YYD1_k127_1743011_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 578.0
YYD1_k127_1743011_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 550.0
YYD1_k127_1743011_10 - - - - 0.0004737 49.0
YYD1_k127_1743011_2 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486 424.0
YYD1_k127_1743011_3 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000003457 239.0
YYD1_k127_1743011_4 - - - - 0.000000000000000000000000000000000000000000000000002542 190.0
YYD1_k127_1743011_5 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000007966 164.0
YYD1_k127_1743011_6 ABC-type multidrug transport system, ATPase and permease K18890 - - 0.000000000000000000000000000000000001695 157.0
YYD1_k127_1743011_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000001802 95.0
YYD1_k127_1743011_9 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000003356 51.0
YYD1_k127_1767093_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.915e-309 954.0
YYD1_k127_1767093_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 1.396e-249 786.0
YYD1_k127_1767093_10 Sporulation related domain - - - 0.0000000003156 66.0
YYD1_k127_1767093_2 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003355 534.0
YYD1_k127_1767093_3 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 478.0
YYD1_k127_1767093_4 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 356.0
YYD1_k127_1767093_5 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000003291 167.0
YYD1_k127_1767093_6 - - - - 0.000000000000000000000000000000000000001894 158.0
YYD1_k127_1767093_7 Belongs to the HesB IscA family K15724 - - 0.0000000000000000000000000000000000002524 149.0
YYD1_k127_1767093_8 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000003807 135.0
YYD1_k127_1767093_9 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000000000000000003501 89.0
YYD1_k127_1793670_0 Mannitol dehydrogenase K00040 - 1.1.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 516.0
YYD1_k127_1793670_1 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 375.0
YYD1_k127_1793670_2 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 321.0
YYD1_k127_1793670_3 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000004717 238.0
YYD1_k127_1793670_4 - - - - 0.00000000000000000000000000000000000000000000000000000002239 212.0
YYD1_k127_1793670_5 PFAM GGDEF domain containing protein - - - 0.0000008976 61.0
YYD1_k127_1793670_6 HYR domain - - - 0.0002615 48.0
YYD1_k127_1814027_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 5.691e-214 675.0
YYD1_k127_1814027_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 528.0
YYD1_k127_1814027_2 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006658 412.0
YYD1_k127_1814027_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 360.0
YYD1_k127_1814027_4 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 348.0
YYD1_k127_1814027_5 Pyroglutamyl peptidase K01304 - 3.4.19.3 0.00000000000000000000000000000000000000000000000005847 186.0
YYD1_k127_1814027_6 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000005737 177.0
YYD1_k127_1814027_7 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000005824 106.0
YYD1_k127_1834442_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 6.957e-297 921.0
YYD1_k127_1834442_1 homoserine dehydrogenase K00003 - 1.1.1.3 1.208e-239 748.0
YYD1_k127_1834442_10 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 500.0
YYD1_k127_1834442_11 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 441.0
YYD1_k127_1834442_12 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 357.0
YYD1_k127_1834442_13 Enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 344.0
YYD1_k127_1834442_14 Pfam:Kce - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 329.0
YYD1_k127_1834442_15 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 325.0
YYD1_k127_1834442_16 2-deoxy-d-gluconate 3-dehydrogenase K00019,K00065 - 1.1.1.127,1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 302.0
YYD1_k127_1834442_17 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004498 281.0
YYD1_k127_1834442_18 Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000745 269.0
YYD1_k127_1834442_19 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005529 250.0
YYD1_k127_1834442_2 single-stranded-DNA-specific exonuclease recJ K07462 - - 6.293e-215 683.0
YYD1_k127_1834442_20 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001175 252.0
YYD1_k127_1834442_21 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000000000003639 228.0
YYD1_k127_1834442_22 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000001226 217.0
YYD1_k127_1834442_23 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002775 220.0
YYD1_k127_1834442_24 Putative transposase of IS4/5 family (DUF4096) - - - 0.0000000000000000000000000000000000000000000000000000000001392 207.0
YYD1_k127_1834442_25 Adenylate and Guanylate cyclase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000005609 205.0
YYD1_k127_1834442_26 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000004324 191.0
YYD1_k127_1834442_27 transporter component K07112 - - 0.0000000000000000000000000000000000000000000483 165.0
YYD1_k127_1834442_28 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000003584 163.0
YYD1_k127_1834442_29 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000004169 169.0
YYD1_k127_1834442_3 CoA binding domain K17069 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47,2.5.1.49 1.706e-210 662.0
YYD1_k127_1834442_30 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000007099 156.0
YYD1_k127_1834442_31 Transposase - - - 0.0000000000000000000000000000000000000001318 154.0
YYD1_k127_1834442_32 Dopa 4,5-dioxygenase family K10253 - - 0.000000000000000000000000000000000000003836 153.0
YYD1_k127_1834442_33 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000001169 155.0
YYD1_k127_1834442_34 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000000000000007939 132.0
YYD1_k127_1834442_35 - - - - 0.000000000000000000000000000001125 126.0
YYD1_k127_1834442_36 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000008475 126.0
YYD1_k127_1834442_37 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000002753 117.0
YYD1_k127_1834442_39 Tetratricopeptide repeat - - - 0.000000000000000000215 102.0
YYD1_k127_1834442_4 Bacterial protein of unknown function (DUF853) K06915 - - 2.61e-204 649.0
YYD1_k127_1834442_40 Transposase - - - 0.00000000000000003234 83.0
YYD1_k127_1834442_41 Domain of unknown function (DUF1330) - - - 0.00000000000000004348 85.0
YYD1_k127_1834442_42 - - - - 0.000000000000006162 81.0
YYD1_k127_1834442_43 Belongs to the ompA family - - - 0.00000004132 61.0
YYD1_k127_1834442_44 Sel1-like repeats. K07126 - - 0.0000006806 59.0
YYD1_k127_1834442_45 Belongs to the 'phage' integrase family - - - 0.0003197 48.0
YYD1_k127_1834442_5 Aminotransferase K14261 - - 3.275e-197 633.0
YYD1_k127_1834442_6 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009955 587.0
YYD1_k127_1834442_7 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 557.0
YYD1_k127_1834442_8 COG1494 Fructose-1,6-bisphosphatase sedoheptulose 1,7-bisphosphatase and related proteins K11532 - 3.1.3.11,3.1.3.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 525.0
YYD1_k127_1834442_9 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005111 525.0
YYD1_k127_1850113_0 PFAM Citrate transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 538.0
YYD1_k127_1850113_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 445.0
YYD1_k127_1850113_2 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005373 420.0
YYD1_k127_1850113_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 417.0
YYD1_k127_1850113_4 HlyD family K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001673 258.0
YYD1_k127_1850113_5 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002297 241.0
YYD1_k127_1850113_6 Transcriptional regulator K09017 - - 0.00000000000000000000000000000000000000000000000000002483 196.0
YYD1_k127_1850113_7 - - - - 0.0000000000000000000000000001893 121.0
YYD1_k127_1850113_8 Phage integrase family - - - 0.000000000000000162 81.0
YYD1_k127_1856387_0 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 1.061e-242 772.0
YYD1_k127_1856387_1 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K08295 - 6.2.1.32 1.171e-227 717.0
YYD1_k127_1856387_2 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005163 511.0
YYD1_k127_1856387_3 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 456.0
YYD1_k127_1856387_4 Belongs to the glutamine synthetase family K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 317.0
YYD1_k127_1856387_5 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000001806 221.0
YYD1_k127_189757_0 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 435.0
YYD1_k127_189757_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 399.0
YYD1_k127_189757_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000004507 119.0
YYD1_k127_189757_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 369.0
YYD1_k127_189757_3 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 346.0
YYD1_k127_189757_4 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006222 312.0
YYD1_k127_189757_5 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 297.0
YYD1_k127_189757_6 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 294.0
YYD1_k127_189757_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007225 267.0
YYD1_k127_189757_8 COG0346 Lactoylglutathione lyase and related lyases - - - 0.000000000000000000000000000000000000000000000000001585 190.0
YYD1_k127_189757_9 - - - - 0.000000000000000000000000000000002523 138.0
YYD1_k127_1930199_0 HELICc2 K03722 - 3.6.4.12 1.976e-310 965.0
YYD1_k127_1930199_1 TRAP transporter, 4TM 12TM fusion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 596.0
YYD1_k127_1930199_2 4,5-dihydroxyphthalate decarboxylase K04102 - 4.1.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 404.0
YYD1_k127_1930199_3 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 300.0
YYD1_k127_1930199_4 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000008133 235.0
YYD1_k127_1930199_5 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.000000000000000000000000000000000000000000000000000000000000009293 218.0
YYD1_k127_1930199_6 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000002084 131.0
YYD1_k127_1930199_7 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000001087 89.0
YYD1_k127_1955698_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 4.764e-260 807.0
YYD1_k127_1955698_1 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009535 534.0
YYD1_k127_1955698_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 474.0
YYD1_k127_1955698_3 Domain of unknown function (DUF4347) K21449 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 368.0
YYD1_k127_1955698_4 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 352.0
YYD1_k127_1955698_5 FAD binding domain K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009257 315.0
YYD1_k127_1955698_6 Protein of unknown function (DUF2927) - - - 0.0000000000000000000000005065 116.0
YYD1_k127_1955698_7 Dodecin K09165 - - 0.000000000000009605 77.0
YYD1_k127_1955698_8 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000001473 77.0
YYD1_k127_1959297_0 malic enzyme K00029 - 1.1.1.40 0.0 1126.0
YYD1_k127_1959297_1 This protein is involved in the repair of mismatches in DNA K03555 - - 0.0 1118.0
YYD1_k127_1959297_10 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000284 124.0
YYD1_k127_1959297_11 Membrane transport protein MerF - - - 0.00000000000000003305 87.0
YYD1_k127_1959297_12 Mercury scavenger that specifically binds to one mercury ion and which passes it to the mercuric reductase (MerA) via the MerT protein K08364 - - 0.0000000000006472 77.0
YYD1_k127_1959297_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 3.865e-288 902.0
YYD1_k127_1959297_3 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 618.0
YYD1_k127_1959297_4 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 428.0
YYD1_k127_1959297_5 signal transduction histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 376.0
YYD1_k127_1959297_6 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000000002099 259.0
YYD1_k127_1959297_7 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000006006 226.0
YYD1_k127_1959297_8 MerR, DNA binding K08365 - - 0.00000000000000000000000000000000000000001134 158.0
YYD1_k127_1959297_9 MerT mercuric transport protein K08363 - - 0.0000000000000000000000000000000000001908 145.0
YYD1_k127_2000144_0 PFAM Mandelate racemase muconate lactonizing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 338.0
YYD1_k127_2000144_1 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002951 250.0
YYD1_k127_2000144_2 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000002449 191.0
YYD1_k127_2000144_3 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000001363 139.0
YYD1_k127_2000144_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000001306 135.0
YYD1_k127_2000144_5 MafB19-like deaminase - - - 0.0000000000000000000003682 110.0
YYD1_k127_2003952_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1097.0
YYD1_k127_2003952_1 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 1.978e-239 747.0
YYD1_k127_2003952_10 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000005038 139.0
YYD1_k127_2003952_2 Cysteine-rich domain - - - 1.189e-209 659.0
YYD1_k127_2003952_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 534.0
YYD1_k127_2003952_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 354.0
YYD1_k127_2003952_5 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 252.0
YYD1_k127_2003952_6 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000002024 245.0
YYD1_k127_2003952_7 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000001113 238.0
YYD1_k127_2003952_8 protein conserved in bacteria K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000181 201.0
YYD1_k127_2003952_9 Belongs to the Fur family K09826 - - 0.0000000000000000000000000000000000000000000000000000007994 196.0
YYD1_k127_2018956_0 Belongs to the aldehyde dehydrogenase family - - - 1.244e-196 625.0
YYD1_k127_2018956_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 515.0
YYD1_k127_2018956_2 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 290.0
YYD1_k127_2018956_3 SOS response associated peptidase (SRAP) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD1_k127_2022139_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2316.0
YYD1_k127_2022139_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2235.0
YYD1_k127_2022139_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 2.695e-295 918.0
YYD1_k127_2022139_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001022 247.0
YYD1_k127_2022139_4 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000001781 229.0
YYD1_k127_2031415_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 6.126e-210 654.0
YYD1_k127_2031415_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.309e-207 657.0
YYD1_k127_2031415_10 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000704 164.0
YYD1_k127_2031415_11 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000003619 159.0
YYD1_k127_2031415_12 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000008231 152.0
YYD1_k127_2031415_13 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000006402 153.0
YYD1_k127_2031415_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 583.0
YYD1_k127_2031415_3 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009844 533.0
YYD1_k127_2031415_4 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 516.0
YYD1_k127_2031415_5 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 366.0
YYD1_k127_2031415_6 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000000000003175 239.0
YYD1_k127_2031415_7 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000000000000009948 224.0
YYD1_k127_2031415_8 COG4942 Membrane-bound metallopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000008268 243.0
YYD1_k127_2031415_9 protein conserved in bacteria K09798 - - 0.00000000000000000000000000000000000000000000000000000000000009539 228.0
YYD1_k127_2053037_0 ABC1 family - - - 1.192e-210 662.0
YYD1_k127_2053037_1 Oligopeptidase F K08602 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 377.0
YYD1_k127_2056875_0 ABC-type dipeptide transport system, periplasmic component K02035 - - 6.516e-253 792.0
YYD1_k127_2056875_1 Ketopantoate reductase PanE/ApbA C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 448.0
YYD1_k127_2056875_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 392.0
YYD1_k127_2056875_3 Creatinine amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 354.0
YYD1_k127_2056875_4 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 340.0
YYD1_k127_2056875_5 Catalyzes the NAD( )-dependent oxidation of L-carnitine to 3-dehydrocarnitine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008278 343.0
YYD1_k127_2056875_6 helix_turn_helix ASNC type K05800 - - 0.0000000000000000000000000000000000000000000000000000000000000000008714 230.0
YYD1_k127_2056875_7 - - - - 0.00000000000001093 80.0
YYD1_k127_2056875_8 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000003942 60.0
YYD1_k127_2069662_0 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 597.0
YYD1_k127_2069662_1 Aldo/keto reductase family K05882 - 1.1.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 488.0
YYD1_k127_2069662_10 Protein of unknown function (DUF1674) - - - 0.00000000021 63.0
YYD1_k127_2069662_11 transduction histidine kinase K07716 - 2.7.13.3 0.00000004289 63.0
YYD1_k127_2069662_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 475.0
YYD1_k127_2069662_3 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 421.0
YYD1_k127_2069662_4 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 416.0
YYD1_k127_2069662_5 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 339.0
YYD1_k127_2069662_6 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000002088 244.0
YYD1_k127_2069662_7 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000001863 158.0
YYD1_k127_2069662_8 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000006893 118.0
YYD1_k127_2069662_9 Lipopolysaccharide-assembly K03643 - - 0.00000000000000000000004926 105.0
YYD1_k127_2086875_0 inner membrane component K02011 - - 3.359e-207 658.0
YYD1_k127_2086875_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 568.0
YYD1_k127_2086875_10 Sporulation related domain - - - 0.00000000000003316 75.0
YYD1_k127_2086875_11 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000007723 56.0
YYD1_k127_2086875_2 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 404.0
YYD1_k127_2086875_3 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 387.0
YYD1_k127_2086875_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007411 330.0
YYD1_k127_2086875_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 301.0
YYD1_k127_2086875_6 COG1994 Zn-dependent proteases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009403 257.0
YYD1_k127_2086875_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000003037 225.0
YYD1_k127_2086875_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000006239 109.0
YYD1_k127_2086875_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000009324 87.0
YYD1_k127_2094200_0 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 2.083e-275 859.0
YYD1_k127_2094200_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 9.788e-249 790.0
YYD1_k127_2094200_10 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001337 278.0
YYD1_k127_2094200_11 Sulfotransferase domain K01014 - 2.8.2.1 0.000000000000000000000000000000000000000000000000000000000000000001205 237.0
YYD1_k127_2094200_12 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000002242 230.0
YYD1_k127_2094200_13 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000001177 206.0
YYD1_k127_2094200_14 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000001703 112.0
YYD1_k127_2094200_15 - - - - 0.0000000000000000000000002314 116.0
YYD1_k127_2094200_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 1.442e-195 619.0
YYD1_k127_2094200_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 495.0
YYD1_k127_2094200_4 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005125 381.0
YYD1_k127_2094200_5 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 365.0
YYD1_k127_2094200_6 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 352.0
YYD1_k127_2094200_7 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 315.0
YYD1_k127_2094200_8 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 306.0
YYD1_k127_2094200_9 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 304.0
YYD1_k127_2100082_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.834e-210 667.0
YYD1_k127_2100082_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 561.0
YYD1_k127_2100082_2 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 422.0
YYD1_k127_2100082_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 361.0
YYD1_k127_2100082_4 Cell division protein FtsQ K03589 - - 0.00000000000000000000000000000000000000000000000000000000000000002036 233.0
YYD1_k127_2100082_5 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000005659 176.0
YYD1_k127_2100082_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000004161 81.0
YYD1_k127_2103561_0 Belongs to the DNA photolyase family K01669 - 4.1.99.3 5.523e-196 622.0
YYD1_k127_2103561_1 NAD FAD-binding protein K06954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 475.0
YYD1_k127_2103561_2 Protein of unknown function (DUF1365) K09701 - - 0.0000000000000000000000000000000000000000000000000000000006921 206.0
YYD1_k127_2141080_0 COG1138 Cytochrome c biogenesis factor K02198 - - 2.37e-275 865.0
YYD1_k127_2141080_1 Periplasmic binding protein K01999 - - 5.854e-202 636.0
YYD1_k127_2141080_10 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000000000004563 167.0
YYD1_k127_2141080_11 COG2010 Cytochrome c, mono- and diheme variants - - - 0.000000000000000004149 85.0
YYD1_k127_2141080_12 Domain of unknown function (DUF4926) - - - 0.000000000007962 67.0
YYD1_k127_2141080_2 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 533.0
YYD1_k127_2141080_3 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 430.0
YYD1_k127_2141080_4 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 351.0
YYD1_k127_2141080_5 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002805 286.0
YYD1_k127_2141080_6 COG4235 Cytochrome c biogenesis factor K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003303 261.0
YYD1_k127_2141080_7 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000002272 220.0
YYD1_k127_2141080_8 Redoxin K02199 - - 0.000000000000000000000000000000000000000000000000000000000002298 213.0
YYD1_k127_2141080_9 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000005916 184.0
YYD1_k127_2155913_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01907 - 6.2.1.16 8.734e-313 973.0
YYD1_k127_2155913_1 Berberine and berberine like - - - 2.292e-222 697.0
YYD1_k127_2155913_10 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005573 274.0
YYD1_k127_2155913_11 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000007014 241.0
YYD1_k127_2155913_12 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000001046 220.0
YYD1_k127_2155913_13 DinB family - - - 0.0000000000000000000000000000000000000000000000000000000007357 205.0
YYD1_k127_2155913_14 Zincin-like metallopeptidase - - - 0.0000000000000000000000000000000000000000000000000000003206 198.0
YYD1_k127_2155913_15 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000000000000000001692 189.0
YYD1_k127_2155913_16 low molecular weight K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000001592 183.0
YYD1_k127_2155913_17 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 - 3.5.4.5 0.000000000000000000000000000000000000000000002318 169.0
YYD1_k127_2155913_18 - - - - 0.000000000000000000000000000000000000001358 155.0
YYD1_k127_2155913_19 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000001305 138.0
YYD1_k127_2155913_2 Aldo keto reductase - GO:0003674,GO:0003824,GO:0004033,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016491,GO:0016614,GO:0016616,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034198,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0071496,GO:1990928 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 434.0
YYD1_k127_2155913_20 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000000004887 117.0
YYD1_k127_2155913_21 acetyltransferase K03824 - - 0.0000000000000003206 80.0
YYD1_k127_2155913_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008024 374.0
YYD1_k127_2155913_4 FIST_C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005626 385.0
YYD1_k127_2155913_5 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 360.0
YYD1_k127_2155913_6 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 343.0
YYD1_k127_2155913_7 ATPases associated with a variety of cellular activities K02003 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 309.0
YYD1_k127_2155913_8 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006351 297.0
YYD1_k127_2155913_9 Uracil-DNA glycosylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001828 281.0
YYD1_k127_2162015_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 7.453e-306 944.0
YYD1_k127_2162015_1 Amidohydrolase family K05603 - 3.5.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 566.0
YYD1_k127_2162015_2 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 538.0
YYD1_k127_2162015_3 imidazolonepropionase activity K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 497.0
YYD1_k127_2162015_4 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005496 406.0
YYD1_k127_2162015_5 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 378.0
YYD1_k127_2162015_6 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006893 304.0
YYD1_k127_2162015_7 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000003198 244.0
YYD1_k127_2162015_8 Uncharacterized lipoprotein - - - 0.0000000000000000000000000000000000001688 149.0
YYD1_k127_2162015_9 Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain K08738 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045155,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070013,GO:0070469,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 - 0.0000000000000000000000000000006143 128.0
YYD1_k127_2206647_0 Cysteine-rich domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 608.0
YYD1_k127_2206647_1 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 539.0
YYD1_k127_2206647_10 nucleoside-diphosphate sugar epimerase K07276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 317.0
YYD1_k127_2206647_11 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 327.0
YYD1_k127_2206647_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001787 286.0
YYD1_k127_2206647_13 COG1522 Transcriptional regulators - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000462 265.0
YYD1_k127_2206647_14 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000001489 176.0
YYD1_k127_2206647_15 PFAM FAD linked oxidase domain protein K11472 - - 0.00000000000000000000006743 100.0
YYD1_k127_2206647_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 510.0
YYD1_k127_2206647_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 491.0
YYD1_k127_2206647_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 471.0
YYD1_k127_2206647_5 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 464.0
YYD1_k127_2206647_6 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 426.0
YYD1_k127_2206647_7 Proton-conducting membrane transporter K05568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005026 391.0
YYD1_k127_2206647_8 Protein of unknown function (DUF2817) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 392.0
YYD1_k127_2206647_9 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00065 - 1.1.1.127 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 357.0
YYD1_k127_2242719_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1334.0
YYD1_k127_2242719_1 Asparagine synthase K01953 - 6.3.5.4 1.336e-245 776.0
YYD1_k127_2242719_10 COG0438 Glycosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002382 275.0
YYD1_k127_2242719_11 Scavenger mRNA decapping enzyme C-term binding - - - 0.00000000000000000000000000000000000000000000001072 174.0
YYD1_k127_2242719_12 COG2076 Membrane transporters of cations and cationic drugs K11741 - - 0.0000000000000000000000000000000000000000003275 161.0
YYD1_k127_2242719_13 Ankyrin repeat - - - 0.000000000000000000000000000000000000000003389 159.0
YYD1_k127_2242719_14 DMSO reductase anchor subunit K21309 - - 0.00000002354 57.0
YYD1_k127_2242719_2 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 602.0
YYD1_k127_2242719_3 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 579.0
YYD1_k127_2242719_4 tRNA (guanine-N7-)-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 529.0
YYD1_k127_2242719_5 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000903 476.0
YYD1_k127_2242719_6 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K19745 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009302 429.0
YYD1_k127_2242719_7 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 370.0
YYD1_k127_2242719_8 Belongs to the GcvT family K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 332.0
YYD1_k127_2242719_9 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004501 280.0
YYD1_k127_2252104_0 Xanthine dehydrogenase iron-sulfur cluster and FAD-binding subunit A K13481 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 531.0
YYD1_k127_2252104_1 Alcohol dehydrogenase GroES-like domain K00098 - 1.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009419 442.0
YYD1_k127_2252104_2 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007231 434.0
YYD1_k127_2252104_3 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain K13482 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 392.0
YYD1_k127_2252104_4 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 361.0
YYD1_k127_2252104_5 Dihydrodipicolinate synthetase family K13876 - 4.2.1.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 304.0
YYD1_k127_2252104_6 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000000003149 112.0
YYD1_k127_2254944_0 transport system permease component K02037 - - 1.085e-209 670.0
YYD1_k127_2254944_1 PBP superfamily domain K02040 - - 0.0000000000000000000000000000003428 124.0
YYD1_k127_2284884_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000009045 227.0
YYD1_k127_2284884_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000001627 170.0
YYD1_k127_2284884_2 Tautomerase enzyme - - - 0.0000000857 53.0
YYD1_k127_2284884_3 - - - - 0.0000003129 61.0
YYD1_k127_2287808_0 Zn-dependent proteases and their inactivated homologs K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 444.0
YYD1_k127_2287808_1 Belongs to the UbiD family K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327 348.0
YYD1_k127_2312021_0 Protein of unknown function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 368.0
YYD1_k127_2330061_0 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 3.499e-243 765.0
YYD1_k127_2330061_1 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000747 467.0
YYD1_k127_2330061_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 453.0
YYD1_k127_2330061_3 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 417.0
YYD1_k127_2330061_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 422.0
YYD1_k127_2330061_5 asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 332.0
YYD1_k127_2330061_6 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 315.0
YYD1_k127_2330061_7 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000015 231.0
YYD1_k127_2330061_8 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000005239 181.0
YYD1_k127_2330061_9 hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000007754 175.0
YYD1_k127_2394507_0 - - - - 0.0000000000000000000000000000008016 139.0
YYD1_k127_2394507_1 - - - - 0.000000000000000000000003143 115.0
YYD1_k127_2414505_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1037.0
YYD1_k127_2414505_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 4.274e-220 689.0
YYD1_k127_2414505_10 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 388.0
YYD1_k127_2414505_11 branched-chain amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 358.0
YYD1_k127_2414505_12 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 353.0
YYD1_k127_2414505_13 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001355 253.0
YYD1_k127_2414505_14 Riboflavin synthase K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000003232 240.0
YYD1_k127_2414505_15 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000003507 216.0
YYD1_k127_2414505_16 COG0698 Ribose 5-phosphate isomerase RpiB K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000862 197.0
YYD1_k127_2414505_17 ROS/MUCR transcriptional regulator protein - - - 0.00000000000000000000000000000000000000000000000002122 183.0
YYD1_k127_2414505_18 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000000002502 164.0
YYD1_k127_2414505_19 Ubiquinol-cytochrome C chaperone K17662 - - 0.0000000000000000000000000000000000000000001205 168.0
YYD1_k127_2414505_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 550.0
YYD1_k127_2414505_20 transcriptional regulator, MerR - - - 0.0000000000000000000000000000000000000001228 156.0
YYD1_k127_2414505_21 COG2913 Small protein A (tmRNA-binding) - - - 0.00000000000000000000000000000000000009971 149.0
YYD1_k127_2414505_22 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000002184 150.0
YYD1_k127_2414505_23 - - - - 0.000000000000000000000000000000002043 134.0
YYD1_k127_2414505_24 thioesterase K01075 - 3.1.2.23 0.000000000000000000000000000000005563 131.0
YYD1_k127_2414505_25 Uncharacterized ACR, COG1399 - - - 0.00000000000000000000000003075 115.0
YYD1_k127_2414505_26 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000000000000003942 109.0
YYD1_k127_2414505_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 514.0
YYD1_k127_2414505_4 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
YYD1_k127_2414505_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 485.0
YYD1_k127_2414505_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 470.0
YYD1_k127_2414505_7 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 466.0
YYD1_k127_2414505_8 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 456.0
YYD1_k127_2414505_9 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 420.0
YYD1_k127_2427071_0 Protein of unknown function (DUF3141) - - - 6.399e-287 899.0
YYD1_k127_2427071_1 Methionine synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 525.0
YYD1_k127_2427071_10 - - - - 0.000000000000002592 86.0
YYD1_k127_2427071_11 - - - - 0.0000005665 55.0
YYD1_k127_2427071_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 504.0
YYD1_k127_2427071_3 (ABC) transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000609 457.0
YYD1_k127_2427071_4 Phosphate acetyl/butaryl transferase K00625,K00634 - 2.3.1.19,2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 439.0
YYD1_k127_2427071_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 400.0
YYD1_k127_2427071_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 302.0
YYD1_k127_2427071_7 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001785 266.0
YYD1_k127_2427071_8 IMP dehydrogenase activity - - - 0.0000000000000000000000000000000000000000008043 160.0
YYD1_k127_2427071_9 PRC-barrel domain - - - 0.0000000000000000009571 94.0
YYD1_k127_2433568_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 5.683e-215 685.0
YYD1_k127_2433568_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 449.0
YYD1_k127_2433568_2 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007706 264.0
YYD1_k127_2433568_3 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000000004649 234.0
YYD1_k127_2433568_4 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000005683 110.0
YYD1_k127_2433568_5 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000006195 100.0
YYD1_k127_2433568_6 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.0000000000000000136 84.0
YYD1_k127_2433568_7 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000001462 78.0
YYD1_k127_2434582_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 1.883e-224 707.0
YYD1_k127_2434582_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 475.0
YYD1_k127_2434582_2 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 - 3.5.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000134 277.0
YYD1_k127_2434582_3 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003672 266.0
YYD1_k127_2434582_4 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000000000000000001569 193.0
YYD1_k127_2434582_5 protein conserved in bacteria - - - 0.000000000000000000000000000004776 123.0
YYD1_k127_2434582_6 Cold shock K03704 - - 0.0000000000000000000004325 98.0
YYD1_k127_2434582_7 Cold shock protein domain K03704 - - 0.00000000000457 68.0
YYD1_k127_2434582_8 Protein of unknown function (FYDLN_acid) - - - 0.00000000008016 66.0
YYD1_k127_2441088_0 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 6.066e-247 774.0
YYD1_k127_2441088_1 COG1960 Acyl-CoA dehydrogenases K20035 - - 1.253e-240 759.0
YYD1_k127_2441088_10 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000592 270.0
YYD1_k127_2441088_11 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.000000000000000000000000000000000000000000000000000004714 196.0
YYD1_k127_2441088_12 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000007452 111.0
YYD1_k127_2441088_13 Opacity family porin protein - - - 0.000003606 58.0
YYD1_k127_2441088_2 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 600.0
YYD1_k127_2441088_3 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003289 495.0
YYD1_k127_2441088_4 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 504.0
YYD1_k127_2441088_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 479.0
YYD1_k127_2441088_6 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 387.0
YYD1_k127_2441088_7 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 367.0
YYD1_k127_2441088_8 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 361.0
YYD1_k127_2441088_9 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006993 313.0
YYD1_k127_2451314_0 beta-keto acid cleavage enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 532.0
YYD1_k127_2451314_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 377.0
YYD1_k127_2451314_2 PFAM binding-protein-dependent transport systems inner membrane component K11070,K11074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000741 328.0
YYD1_k127_2451314_3 Putrescine transport system permease K11075 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009528 315.0
YYD1_k127_2451314_4 Spondin_N - - - 0.00000000000000000000000000000000000000000000000000000000000004178 220.0
YYD1_k127_2451314_5 integral membrane protein - - - 0.000000000000000000000000000000000000000001884 161.0
YYD1_k127_2451314_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000004776 72.0
YYD1_k127_250594_0 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 398.0
YYD1_k127_250594_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000004588 199.0
YYD1_k127_250594_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000004285 102.0
YYD1_k127_2536266_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.27e-278 870.0
YYD1_k127_2536266_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 510.0
YYD1_k127_2536266_2 Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000183 162.0
YYD1_k127_2536266_3 TIGRFAM addiction module antidote protein, HigA family K21498 - - 0.0000000000000000000000000000000000187 137.0
YYD1_k127_2536266_4 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.00000000000000000000000000000006005 126.0
YYD1_k127_2536266_5 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000004616 76.0
YYD1_k127_2559933_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01895 - 6.2.1.1 2.424e-241 758.0
YYD1_k127_2559933_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 2.054e-233 728.0
YYD1_k127_2559933_10 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 299.0
YYD1_k127_2559933_11 2-hydroxychromene-2-carboxylate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000005141 223.0
YYD1_k127_2559933_12 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000000000000006652 202.0
YYD1_k127_2559933_13 monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000006566 184.0
YYD1_k127_2559933_14 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000004052 187.0
YYD1_k127_2559933_15 Cupin domain - - - 0.0000000000000000000000000000000000000000000000001976 184.0
YYD1_k127_2559933_16 Domain of unknown function (DUF4114) - - - 0.000000000000003152 83.0
YYD1_k127_2559933_17 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.00000001433 58.0
YYD1_k127_2559933_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 8.547e-222 694.0
YYD1_k127_2559933_3 Aldehyde dehydrogenase family - - - 5.362e-220 695.0
YYD1_k127_2559933_4 phosphomannomutase K01840 - 5.4.2.8 1.899e-198 633.0
YYD1_k127_2559933_5 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 547.0
YYD1_k127_2559933_6 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 497.0
YYD1_k127_2559933_7 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 433.0
YYD1_k127_2559933_8 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 394.0
YYD1_k127_2559933_9 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077 325.0
YYD1_k127_2584169_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1289.0
YYD1_k127_2584169_1 transport system fused permease components - - - 0.0 1099.0
YYD1_k127_2584169_10 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000004865 228.0
YYD1_k127_2584169_11 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000001352 216.0
YYD1_k127_2584169_12 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000002499 226.0
YYD1_k127_2584169_13 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000003804 172.0
YYD1_k127_2584169_14 transcriptional regulator - - - 0.0000000000000000000000000000000004779 138.0
YYD1_k127_2584169_15 transcriptional regulators K22042 - - 0.000000000000000000000000000006971 122.0
YYD1_k127_2584169_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 1.505e-202 639.0
YYD1_k127_2584169_3 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 502.0
YYD1_k127_2584169_4 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 430.0
YYD1_k127_2584169_5 Methyltransferase K06968 - 2.1.1.186 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009102 419.0
YYD1_k127_2584169_6 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009467 411.0
YYD1_k127_2584169_7 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 349.0
YYD1_k127_2584169_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001601 273.0
YYD1_k127_2584169_9 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 241.0
YYD1_k127_2590016_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 578.0
YYD1_k127_2590016_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
YYD1_k127_2590016_2 Protein of unknown function (DUF498/DUF598) - - - 0.000000000000000000000000000000000000000003037 160.0
YYD1_k127_2590016_3 Preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000000009091 143.0
YYD1_k127_2604639_0 COG0768 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 1.09e-200 641.0
YYD1_k127_2604639_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 563.0
YYD1_k127_2604639_10 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily K15268 - - 0.000000000000000000000000000000000007913 140.0
YYD1_k127_2604639_11 - - - - 0.000000000000000000000004653 110.0
YYD1_k127_2604639_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 532.0
YYD1_k127_2604639_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 527.0
YYD1_k127_2604639_4 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 496.0
YYD1_k127_2604639_5 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 482.0
YYD1_k127_2604639_6 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 383.0
YYD1_k127_2604639_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 287.0
YYD1_k127_2604639_8 COG3023 Negative regulator of beta-lactamase expression K01447 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000576 283.0
YYD1_k127_2604639_9 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000003048 158.0
YYD1_k127_267320_0 COG0480 Translation elongation factors (GTPases) K02355 - - 3.932e-274 859.0
YYD1_k127_267320_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.537e-210 662.0
YYD1_k127_267320_10 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004897 286.0
YYD1_k127_267320_11 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000000008308 193.0
YYD1_k127_267320_12 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.00000000000000000000000000000000000000000000000002264 189.0
YYD1_k127_267320_13 Protein of unknown function (DUF1244) K09948 - - 0.000000000000000000000000000000000000000003963 156.0
YYD1_k127_267320_14 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000001181 155.0
YYD1_k127_267320_15 High-affinity nickel-transport protein K08970 - - 0.0000000000000000000000000000000000001542 156.0
YYD1_k127_267320_16 Cytochrome P460 - - - 0.0000000000000000000000000000000000004809 146.0
YYD1_k127_267320_17 Domain of unknown function (DUF305) - - - 0.0000000000000000000000000000002755 130.0
YYD1_k127_267320_18 transport system, periplasmic component - - - 0.000000000000000000000000000003997 127.0
YYD1_k127_267320_19 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.0000000000000000000000001206 108.0
YYD1_k127_267320_2 Aminotransferase K00812 - 2.6.1.1 9.746e-210 661.0
YYD1_k127_267320_20 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000004265 112.0
YYD1_k127_267320_21 Belongs to the HpcH HpaI aldolase family K01644 GO:0000287,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006107,GO:0008150,GO:0008152,GO:0009987,GO:0019752,GO:0043167,GO:0043169,GO:0043436,GO:0043648,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0046872,GO:0071704 4.1.3.34 0.000000000000004912 80.0
YYD1_k127_267320_3 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007842 593.0
YYD1_k127_267320_4 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 556.0
YYD1_k127_267320_5 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 517.0
YYD1_k127_267320_6 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 411.0
YYD1_k127_267320_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 341.0
YYD1_k127_267320_8 Ketopantoate reductase PanE/ApbA C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 315.0
YYD1_k127_267320_9 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 306.0
YYD1_k127_2682325_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 8.02e-230 724.0
YYD1_k127_2682325_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 556.0
YYD1_k127_2682325_10 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000006447 105.0
YYD1_k127_2682325_11 PRC-barrel domain - - - 0.0000000000000000003985 96.0
YYD1_k127_2682325_2 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008355 398.0
YYD1_k127_2682325_3 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 374.0
YYD1_k127_2682325_4 NAD-dependent epimerase dehydratase K01784,K08678,K12454 - 4.1.1.35,5.1.3.10,5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 365.0
YYD1_k127_2682325_5 C-terminal domain of 1-Cys peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 349.0
YYD1_k127_2682325_6 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000002992 181.0
YYD1_k127_2682325_7 Sirohaem biosynthesis protein central K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000000001534 174.0
YYD1_k127_2682325_8 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000008159 148.0
YYD1_k127_2682325_9 Parallel beta-helix repeats - - - 0.0000000000000000000000001847 121.0
YYD1_k127_2731596_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K03520 - 1.2.5.3 1.514e-311 965.0
YYD1_k127_2731596_1 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007464 285.0
YYD1_k127_2731596_2 CO dehydrogenase flavoprotein C-terminal domain K04109,K11178 - 1.17.1.4,1.3.7.9 0.0009687 42.0
YYD1_k127_2805381_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 2.549e-203 639.0
YYD1_k127_2805381_1 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 536.0
YYD1_k127_2805381_2 COG2309 Leucyl aminopeptidase (aminopeptidase T) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 521.0
YYD1_k127_2805381_3 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 333.0
YYD1_k127_2805381_4 Transcriptional regulator - - - 0.0000000000000000000000000000000004064 136.0
YYD1_k127_2805381_5 PFAM GtrA family protein - - - 0.00000000000005347 77.0
YYD1_k127_2805381_6 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000002815 55.0
YYD1_k127_2813135_0 FAD binding domain K05712 - 1.14.13.127 1.519e-215 685.0
YYD1_k127_2813135_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 536.0
YYD1_k127_2813135_10 PD-(D/E)XK nuclease superfamily - - - 0.000000000005295 67.0
YYD1_k127_2813135_11 PD-(D/E)XK nuclease superfamily - - - 0.000001357 52.0
YYD1_k127_2813135_12 NMT1-like family - - - 0.000001858 51.0
YYD1_k127_2813135_2 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 449.0
YYD1_k127_2813135_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 442.0
YYD1_k127_2813135_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 386.0
YYD1_k127_2813135_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007836 359.0
YYD1_k127_2813135_6 branched-chain amino acid transport K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 336.0
YYD1_k127_2813135_7 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 332.0
YYD1_k127_2813135_8 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000001681 263.0
YYD1_k127_2813135_9 Protein of unknown function (DUF2783) - - - 0.000000000003915 73.0
YYD1_k127_2886066_0 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 3.109e-251 797.0
YYD1_k127_2886066_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 1.346e-241 754.0
YYD1_k127_2886066_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 2.111e-221 696.0
YYD1_k127_2886066_3 Potassium transporter peripheral membrane component K03499 - - 2.167e-203 642.0
YYD1_k127_2886066_4 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008552 505.0
YYD1_k127_2886066_5 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 458.0
YYD1_k127_2886066_6 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 430.0
YYD1_k127_2886066_7 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000005934 237.0
YYD1_k127_2886066_8 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000189 117.0
YYD1_k127_2886066_9 Amino-transferase class IV K00824 - 2.6.1.21 0.0000000000000000000000008447 106.0
YYD1_k127_2908585_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 565.0
YYD1_k127_2908585_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 434.0
YYD1_k127_2908585_2 17 kDa outer membrane surface antigen - - - 0.0000000000000000000000000000000000000000000000000009433 186.0
YYD1_k127_2910721_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1330.0
YYD1_k127_2910721_1 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K01847 - 5.4.99.2 0.0 1097.0
YYD1_k127_2910721_10 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 346.0
YYD1_k127_2910721_11 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 303.0
YYD1_k127_2910721_12 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007538 274.0
YYD1_k127_2910721_13 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002155 275.0
YYD1_k127_2910721_14 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002858 278.0
YYD1_k127_2910721_15 sugar phosphatases of the HAD superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000484 276.0
YYD1_k127_2910721_16 Peptidase S24-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001341 247.0
YYD1_k127_2910721_17 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000001384 243.0
YYD1_k127_2910721_18 PFAM Methyltransferase type - - - 0.00000000000000000000000000000000000000000000000000000000000000003484 228.0
YYD1_k127_2910721_19 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000004014 220.0
YYD1_k127_2910721_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 7.977e-228 722.0
YYD1_k127_2910721_20 Protein of unknown function (DUF952) - - - 0.0000000000000000000000000000000000000000000007282 168.0
YYD1_k127_2910721_21 - - - - 0.00000000000000000000000000000000000000006927 157.0
YYD1_k127_2910721_22 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000000000000007548 152.0
YYD1_k127_2910721_23 AraC-like ligand binding domain - - - 0.000000000000000000000000000000002019 136.0
YYD1_k127_2910721_24 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000009318 134.0
YYD1_k127_2910721_25 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000001178 123.0
YYD1_k127_2910721_26 PAS domain - - - 0.0000000000000003729 85.0
YYD1_k127_2910721_3 Adenylyl- / guanylyl cyclase, catalytic domain - - - 1.78e-208 666.0
YYD1_k127_2910721_4 Bacterial extracellular solute-binding protein, family 7 - - - 9.127e-207 646.0
YYD1_k127_2910721_5 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006317 507.0
YYD1_k127_2910721_6 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006478 490.0
YYD1_k127_2910721_7 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006427 422.0
YYD1_k127_2910721_8 Carbon-nitrogen hydrolase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 353.0
YYD1_k127_2910721_9 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 355.0
YYD1_k127_2921698_0 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000006324 220.0
YYD1_k127_2921698_1 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000003095 150.0
YYD1_k127_2921698_2 Aminotransferase class I and II K21784 - - 0.0000000000000000000000000006112 116.0
YYD1_k127_2921698_3 EAL domain - - - 0.000000000000007758 76.0
YYD1_k127_2941542_0 ornithine cyclodeaminase activity K01750,K18258,K19244 - 1.4.1.1,1.5.1.25,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 340.0
YYD1_k127_2941542_1 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007185 269.0
YYD1_k127_294415_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009571 442.0
YYD1_k127_294415_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006894 398.0
YYD1_k127_294415_2 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005236 246.0
YYD1_k127_294415_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000001285 226.0
YYD1_k127_294415_4 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000000000572 181.0
YYD1_k127_294415_5 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000001886 175.0
YYD1_k127_294415_6 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000008467 143.0
YYD1_k127_294415_7 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000001685 104.0
YYD1_k127_294415_8 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000126 82.0
YYD1_k127_2946554_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 1.808e-215 681.0
YYD1_k127_2946554_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005237 442.0
YYD1_k127_2946554_2 Succinylglutamate desuccinylase aspartoacylase family protein - - - 0.000000000000000000000000000000000000000000000000000000006721 202.0
YYD1_k127_2965379_0 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 477.0
YYD1_k127_2965379_1 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 456.0
YYD1_k127_2965379_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 363.0
YYD1_k127_2965379_3 COG0524 Sugar kinases, ribokinase family K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 299.0
YYD1_k127_2965379_4 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003278 289.0
YYD1_k127_2965379_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000118 266.0
YYD1_k127_2965379_6 GDP-mannose mannosyl hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002366 254.0
YYD1_k127_2965379_7 Sigma-70, region 4 K03088 - - 0.000000000000000000001069 97.0
YYD1_k127_2965379_8 - - - - 0.00000000000000001831 88.0
YYD1_k127_2981387_0 Amidohydrolase family - - - 4.98e-205 666.0
YYD1_k127_2981387_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 542.0
YYD1_k127_2981387_2 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.000000000000000000000000000000000000000003447 170.0
YYD1_k127_2981387_3 protein conserved in bacteria - - - 0.000000000000000000000000000001713 123.0
YYD1_k127_2981387_4 Helix-turn-helix domain - - - 0.0000000002598 65.0
YYD1_k127_2998957_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 519.0
YYD1_k127_2998957_1 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 503.0
YYD1_k127_2998957_2 COG0811 Biopolymer transport proteins K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 322.0
YYD1_k127_2998957_3 biopolymer transport protein K03559,K03560 - - 0.00000000000000000000000000000000000000000000005206 175.0
YYD1_k127_2998957_4 Cell division and transport-associated protein TolA - - - 0.0000000000000000000000000000000000000003919 161.0
YYD1_k127_2998957_5 thioesterase' K07107 - - 0.0000000000000000000000000000000006296 138.0
YYD1_k127_2998957_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000003117 81.0
YYD1_k127_30503_0 AAA domain - - - 3.806e-196 638.0
YYD1_k127_30503_1 NfeD-like C-terminal, partner-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 454.0
YYD1_k127_30503_2 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 432.0
YYD1_k127_30503_3 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 353.0
YYD1_k127_30503_4 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001596 278.0
YYD1_k127_30503_5 thiamine-containing compound biosynthetic process K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001496 271.0
YYD1_k127_30503_6 beta-lactamase activity K07126 - - 0.000000000000000000000000000000000000003324 159.0
YYD1_k127_3115686_0 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 5.031e-204 639.0
YYD1_k127_3115686_1 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 411.0
YYD1_k127_3115686_2 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 318.0
YYD1_k127_3115686_3 Sulfatase-modifying factor enzyme 1 K20333 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 316.0
YYD1_k127_3115686_4 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000951 280.0
YYD1_k127_3115686_5 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001819 283.0
YYD1_k127_3115686_6 Protein of unknown function (DUF1194) - - - 0.000000000000000000000000000000000000000000000000000000000000001965 226.0
YYD1_k127_3115686_7 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000001146 132.0
YYD1_k127_3115686_8 COG1734 DnaK suppressor protein K06204 - - 0.000000000000000000000000000007447 123.0
YYD1_k127_3115686_9 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000009825 78.0
YYD1_k127_3140275_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.458e-255 792.0
YYD1_k127_3140275_1 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 406.0
YYD1_k127_3140275_2 YHS domain protein - - - 0.0000000000000000000000000000000000005238 145.0
YYD1_k127_314509_0 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 306.0
YYD1_k127_314509_1 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002663 282.0
YYD1_k127_314509_2 - - - - 0.000000000000000000000000000000000000000000000004384 193.0
YYD1_k127_314509_3 Protein of unknown function (DUF2459) - - - 0.000000000000000000000000000000000000000000002136 175.0
YYD1_k127_314509_4 - - - - 0.0001808 48.0
YYD1_k127_3199752_0 Adenylate cyclase - - - 1.023e-243 767.0
YYD1_k127_3199752_1 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 433.0
YYD1_k127_3199752_2 phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 360.0
YYD1_k127_3199752_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000000001266 109.0
YYD1_k127_3199752_4 Glycogen debranching enzyme - - - 0.0000000000002956 71.0
YYD1_k127_3206449_0 Histidine kinase-like ATPases - - - 3.169e-319 1013.0
YYD1_k127_3206449_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 542.0
YYD1_k127_3206449_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 463.0
YYD1_k127_3206449_3 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 451.0
YYD1_k127_3206449_4 VWA domain containing CoxE-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 439.0
YYD1_k127_3206449_5 COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 366.0
YYD1_k127_3206449_6 cheY-homologous receiver domain K11443 - - 0.0000000000000000000000000000000000000000000000000000004029 201.0
YYD1_k127_321676_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 6.662e-277 866.0
YYD1_k127_321676_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 8.481e-226 705.0
YYD1_k127_321676_10 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 430.0
YYD1_k127_321676_11 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 424.0
YYD1_k127_321676_12 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 400.0
YYD1_k127_321676_13 (Fe-S) oxidoreductase K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 396.0
YYD1_k127_321676_14 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 403.0
YYD1_k127_321676_15 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 378.0
YYD1_k127_321676_16 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008902 370.0
YYD1_k127_321676_17 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 368.0
YYD1_k127_321676_18 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 340.0
YYD1_k127_321676_19 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 336.0
YYD1_k127_321676_2 LUD domain K18929 - - 8.841e-221 707.0
YYD1_k127_321676_20 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 340.0
YYD1_k127_321676_21 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007702 320.0
YYD1_k127_321676_22 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 315.0
YYD1_k127_321676_23 signal transduction protein containing sensor and EAL domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 307.0
YYD1_k127_321676_24 ATPase with chaperone activity K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008904 286.0
YYD1_k127_321676_25 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 284.0
YYD1_k127_321676_26 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 284.0
YYD1_k127_321676_27 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001586 282.0
YYD1_k127_321676_28 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001213 290.0
YYD1_k127_321676_29 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005866 276.0
YYD1_k127_321676_3 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.2e-218 683.0
YYD1_k127_321676_30 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006136 246.0
YYD1_k127_321676_31 Belongs to the short-chain dehydrogenases reductases (SDR) family K04786,K13611,K13612,K13613,K13614,K16216 - 1.1.1.320 0.000000000000000000000000000000000000000000000000000000000000000000006743 252.0
YYD1_k127_321676_32 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000009229 237.0
YYD1_k127_321676_33 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000005694 229.0
YYD1_k127_321676_34 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000001576 227.0
YYD1_k127_321676_35 LUD domain K00782 - - 0.00000000000000000000000000000000000000000000000000000000000001155 231.0
YYD1_k127_321676_36 Belongs to the phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000348 211.0
YYD1_k127_321676_37 OsmC-like protein K06889,K07397 - - 0.0000000000000000000000000000000000000000000000000000000000593 208.0
YYD1_k127_321676_38 Ferredoxin, 2Fe-2S - - - 0.00000000000000000000000000000000000000000000000000007934 190.0
YYD1_k127_321676_39 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000001113 196.0
YYD1_k127_321676_4 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 1.261e-211 665.0
YYD1_k127_321676_40 Cupin domain - - - 0.00000000000000000000000000000000000000000000000001872 194.0
YYD1_k127_321676_41 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.0000000000000000000000000000000000000000000000001646 181.0
YYD1_k127_321676_42 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000000000000000342 172.0
YYD1_k127_321676_43 PFAM YbaK prolyl-tRNA K19055 - - 0.00000000000000000000000000000000000000000008604 165.0
YYD1_k127_321676_44 Methyltransferase domain - - - 0.0000000000000000000000000000000000000001644 154.0
YYD1_k127_321676_45 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000009926 156.0
YYD1_k127_321676_46 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000005568 158.0
YYD1_k127_321676_47 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.0000000000000000000000000000000000006671 142.0
YYD1_k127_321676_48 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000004713 142.0
YYD1_k127_321676_49 Putative cyclase - - - 0.0000000000000000000000000000002043 129.0
YYD1_k127_321676_5 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 567.0
YYD1_k127_321676_50 PAS domain - - - 0.0000000000000000000000000000002114 130.0
YYD1_k127_321676_51 protein conserved in bacteria - - - 0.0000000000000000000000000000008401 132.0
YYD1_k127_321676_52 domain, Protein - - - 0.0000000000000000000000000002045 119.0
YYD1_k127_321676_53 PFAM Transglycosylase-associated protein - - - 0.0000000000000000001617 91.0
YYD1_k127_321676_54 nUDIX hydrolase - - - 0.00000000000000006632 84.0
YYD1_k127_321676_55 Protein of unknown function (DUF2628) - - - 0.00000000000005421 84.0
YYD1_k127_321676_6 membrane-bound lytic murein transglycosylase K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 503.0
YYD1_k127_321676_7 Pfam:DUF955 K07110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 498.0
YYD1_k127_321676_8 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 479.0
YYD1_k127_321676_9 AAA domain K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 481.0
YYD1_k127_3218235_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 2.153e-210 664.0
YYD1_k127_3218235_1 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000000134 153.0
YYD1_k127_3218235_2 Septum formation initiator - - - 0.0000000000000000000000001505 109.0
YYD1_k127_3218235_3 PAS domain - - - 0.00000000000001083 81.0
YYD1_k127_3228672_0 Adenylate - - - 4.626e-312 992.0
YYD1_k127_3228672_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.278e-293 918.0
YYD1_k127_3228672_10 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000000002637 191.0
YYD1_k127_3228672_11 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000009273 158.0
YYD1_k127_3228672_12 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000003324 142.0
YYD1_k127_3228672_13 FCD - - - 0.00000000000000007447 89.0
YYD1_k127_3228672_14 transcription regulator containing HTH domain K18831 - - 0.0000000000000124 77.0
YYD1_k127_3228672_15 Sterol carrier protein - - - 0.00000000000005771 79.0
YYD1_k127_3228672_16 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000001064 58.0
YYD1_k127_3228672_2 Lipoprotein releasing system transmembrane protein LolC K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0098796,GO:0098797 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 556.0
YYD1_k127_3228672_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 520.0
YYD1_k127_3228672_4 Protein conserved in bacteria K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 397.0
YYD1_k127_3228672_5 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 325.0
YYD1_k127_3228672_6 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit K15751 - 1.14.12.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007846 325.0
YYD1_k127_3228672_7 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K05685,K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 305.0
YYD1_k127_3228672_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001777 273.0
YYD1_k127_3228672_9 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000001949 218.0
YYD1_k127_3239910_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 486.0
YYD1_k127_3239910_1 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 477.0
YYD1_k127_3239910_10 GcrA cell cycle regulator K13583 - - 0.0000000000000000000000000000000000000003289 154.0
YYD1_k127_3239910_11 transmembrane transcriptional regulator (anti-sigma factor) - - - 0.0000000000000000000000001027 118.0
YYD1_k127_3239910_12 Domain of unknown function (DUF1127) - - - 0.00000004968 57.0
YYD1_k127_3239910_13 - - - - 0.00005685 54.0
YYD1_k127_3239910_2 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 396.0
YYD1_k127_3239910_3 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 376.0
YYD1_k127_3239910_4 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 366.0
YYD1_k127_3239910_5 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 319.0
YYD1_k127_3239910_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 297.0
YYD1_k127_3239910_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000007681 228.0
YYD1_k127_3239910_8 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000006801 189.0
YYD1_k127_3239910_9 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000003884 164.0
YYD1_k127_3244222_0 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 411.0
YYD1_k127_3244222_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 326.0
YYD1_k127_3244222_2 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 295.0
YYD1_k127_3244222_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 296.0
YYD1_k127_3244222_4 protein containing LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003791 280.0
YYD1_k127_3244222_5 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000002372 232.0
YYD1_k127_3244222_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000273 208.0
YYD1_k127_3244222_7 Cytochrome C' - - - 0.000000000000000002199 91.0
YYD1_k127_3244222_8 cytochrome - - - 0.0000000000001665 77.0
YYD1_k127_3244222_9 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K03320 - - 0.000000001745 68.0
YYD1_k127_3257047_0 Proton-conducting membrane transporter - - - 6.822e-206 651.0
YYD1_k127_3257047_1 Proton-conducting membrane transporter K00343,K05568 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 581.0
YYD1_k127_3257047_10 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000000003079 122.0
YYD1_k127_3257047_2 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 499.0
YYD1_k127_3257047_3 Proton-conducting membrane transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 398.0
YYD1_k127_3257047_4 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000043 248.0
YYD1_k127_3257047_5 Domain of unknown function (DUF4040) K05566 - - 0.0000000000000000000000000000000000000000000000000000000000001152 223.0
YYD1_k127_3257047_6 Domain related to MnhB subunit of Na+/H+ antiporter K05566 - - 0.000000000000000000000000000000000000000000000000002192 194.0
YYD1_k127_3257047_7 COG1006 Multisubunit Na H antiporter, MnhC subunit K05567 - - 0.00000000000000000000000000000000000000000000000005683 180.0
YYD1_k127_3257047_8 COG1863 Multisubunit Na H antiporter MnhE subunit K05569 - - 0.000000000000000000000000000000000000000000000006518 178.0
YYD1_k127_3257047_9 monovalent cation:proton antiporter activity K05571 - - 0.0000000000000000000000000000000000001244 143.0
YYD1_k127_327046_0 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 454.0
YYD1_k127_327046_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005645 337.0
YYD1_k127_327046_2 KR domain K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000231 241.0
YYD1_k127_327046_3 Pfam:Pyridox_oxidase K01768 - 4.6.1.1 0.00000000000000000000001083 112.0
YYD1_k127_3273334_0 Protein of unknown function (DUF1116) - - - 1.544e-195 621.0
YYD1_k127_3273334_1 ABC-type oligopeptide transport system, periplasmic component K02035,K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 610.0
YYD1_k127_3273334_10 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000005422 240.0
YYD1_k127_3273334_11 - - - - 0.000000000000000000000000000000000000000000001444 176.0
YYD1_k127_3273334_12 Protein of unknown function (DUF2877) - - - 0.0000000000000000000000000000000000000000001418 171.0
YYD1_k127_3273334_2 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 563.0
YYD1_k127_3273334_3 CoA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 484.0
YYD1_k127_3273334_4 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006264 384.0
YYD1_k127_3273334_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 384.0
YYD1_k127_3273334_6 Helix-turn-helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 383.0
YYD1_k127_3273334_7 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009119 322.0
YYD1_k127_3273334_8 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006179 317.0
YYD1_k127_3273334_9 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004557 246.0
YYD1_k127_3290534_0 ABC-type multidrug transport system, ATPase and permease K06147 - - 2.337e-224 713.0
YYD1_k127_3290534_1 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 505.0
YYD1_k127_3290534_10 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000682 244.0
YYD1_k127_3290534_11 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000003751 247.0
YYD1_k127_3290534_12 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000000000000000000005491 218.0
YYD1_k127_3290534_13 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.0000000000000000000000000000000000000000000000000000000006163 205.0
YYD1_k127_3290534_14 o-acetylhomoserine K01740 - 2.5.1.49 0.0000000000000000000000000000000000000000000000000000004152 195.0
YYD1_k127_3290534_15 surface antigen - - - 0.00000000000000000000000000000000000000000001518 170.0
YYD1_k127_3290534_16 Binds the 23S rRNA K02909 - - 0.00000000000000000000000000000000008347 136.0
YYD1_k127_3290534_17 - - - - 0.00000000000000000000000000005805 121.0
YYD1_k127_3290534_18 Belongs to the frataxin family K19054 - 1.16.3.1 0.00000000000000000000000007909 110.0
YYD1_k127_3290534_19 COG2885 outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.000000000000000004301 97.0
YYD1_k127_3290534_2 Histidine kinase-like ATPases K14980 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 476.0
YYD1_k127_3290534_20 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000002104 50.0
YYD1_k127_3290534_21 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000002141 53.0
YYD1_k127_3290534_22 - - - - 0.000007858 57.0
YYD1_k127_3290534_3 MotA TolQ ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 445.0
YYD1_k127_3290534_4 lysyl-tRNA synthetase K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 433.0
YYD1_k127_3290534_5 lysine 2,3-aminomutase K01843 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 413.0
YYD1_k127_3290534_6 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 372.0
YYD1_k127_3290534_7 flagellar motor protein K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 371.0
YYD1_k127_3290534_8 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003661 284.0
YYD1_k127_3290534_9 Transcriptional regulatory protein, C terminal K14981 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002412 259.0
YYD1_k127_3349944_0 COG2931, RTX toxins and related Ca2 -binding proteins K01127 - 3.1.4.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 543.0
YYD1_k127_3349944_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 405.0
YYD1_k127_3349944_2 COG2931 RTX toxins and related Ca2 -binding proteins K01406,K07004 - 3.4.24.40 0.0000002488 64.0
YYD1_k127_3368838_0 transport systems, ATPase components K02056 - 3.6.3.17 3.351e-214 685.0
YYD1_k127_3368838_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00758 - 2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 533.0
YYD1_k127_3368838_11 - - - - 0.00009042 53.0
YYD1_k127_3368838_2 Metalloenzyme superfamily K01839 - 5.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 529.0
YYD1_k127_3368838_3 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 488.0
YYD1_k127_3368838_4 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006955 468.0
YYD1_k127_3368838_5 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007609 459.0
YYD1_k127_3368838_6 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000191 292.0
YYD1_k127_3368838_7 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000004842 256.0
YYD1_k127_3368838_8 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000000000000000000000000000000000000000000000002105 179.0
YYD1_k127_3368838_9 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000871 153.0
YYD1_k127_3384160_0 Type II secretory pathway, component ExeA - - - 0.0000000000000000000000000000013 141.0
YYD1_k127_3384160_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.000000000000000003536 90.0
YYD1_k127_3384875_0 Chloride channel protein K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002634 287.0
YYD1_k127_3384875_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000006187 168.0
YYD1_k127_3396106_0 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 295.0
YYD1_k127_3396106_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000001314 220.0
YYD1_k127_3396106_2 C4-dicarboxylate ABC transporter permease - - - 0.000000000000000000001211 96.0
YYD1_k127_3403151_0 COG1840 ABC-type Fe3 transport system, periplasmic component K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006375 556.0
YYD1_k127_3403151_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 543.0
YYD1_k127_3403151_10 TOBE domain K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 395.0
YYD1_k127_3403151_11 Belongs to the bacterial solute-binding protein 3 family K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 388.0
YYD1_k127_3403151_12 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 376.0
YYD1_k127_3403151_13 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 353.0
YYD1_k127_3403151_14 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 347.0
YYD1_k127_3403151_15 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 345.0
YYD1_k127_3403151_16 Belongs to the 5'-nucleotidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004971 323.0
YYD1_k127_3403151_17 COG1177 ABC-type spermidine putrescine transport system, permease component II K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 322.0
YYD1_k127_3403151_18 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 321.0
YYD1_k127_3403151_19 Allophanate hydrolase K01457 - 3.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 316.0
YYD1_k127_3403151_2 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 509.0
YYD1_k127_3403151_20 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 295.0
YYD1_k127_3403151_21 COG0555 ABC-type sulfate transport system, permease component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 278.0
YYD1_k127_3403151_22 Galactose oxidase, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009432 253.0
YYD1_k127_3403151_23 Allophanate hydrolase subunit 1 K01457 - 3.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000002186 248.0
YYD1_k127_3403151_24 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000388 249.0
YYD1_k127_3403151_25 NADPH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000004274 236.0
YYD1_k127_3403151_26 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000002445 190.0
YYD1_k127_3403151_27 DoxX K15977 - - 0.00000000000000000000000000000001927 133.0
YYD1_k127_3403151_28 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000004421 131.0
YYD1_k127_3403151_29 Endoribonuclease L-PSP - - - 0.0000000000000000000000000005362 120.0
YYD1_k127_3403151_3 Cobalamin-independent synthase, Catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005846 486.0
YYD1_k127_3403151_4 Amidohydrolase family K01485 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050228,GO:0050279 3.5.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 477.0
YYD1_k127_3403151_5 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 468.0
YYD1_k127_3403151_6 Binding-protein-dependent transport system inner membrane component K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 438.0
YYD1_k127_3403151_7 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 433.0
YYD1_k127_3403151_8 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 420.0
YYD1_k127_3403151_9 amino acid ABC transporter K02029,K09971,K10002,K10037 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 398.0
YYD1_k127_3455451_0 GSCFA domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 424.0
YYD1_k127_3455451_1 PFAM Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001979 258.0
YYD1_k127_3455451_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000003583 203.0
YYD1_k127_3455451_3 - - - - 0.00000000000000000000000000000000000001991 156.0
YYD1_k127_3455564_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1633.0
YYD1_k127_3455564_1 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 610.0
YYD1_k127_3455564_2 Iron/manganese superoxide dismutases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 347.0
YYD1_k127_3455564_3 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001872 248.0
YYD1_k127_3455564_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000093 239.0
YYD1_k127_3455564_5 Yqey-like protein K09117 - - 0.000000000000000000000000000000000000000000000000005605 186.0
YYD1_k127_3455564_6 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000001921 173.0
YYD1_k127_3455564_7 Chromate resistance exported protein - - - 0.00000000000000000000001592 103.0
YYD1_k127_3505172_0 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 3.984e-319 995.0
YYD1_k127_3505172_1 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 606.0
YYD1_k127_3505172_10 - - - - 0.0000000001046 63.0
YYD1_k127_3505172_11 - - - - 0.0000000001169 73.0
YYD1_k127_3505172_12 - - - - 0.000000002801 62.0
YYD1_k127_3505172_13 Recombinase zinc beta ribbon domain - - - 0.00000008421 55.0
YYD1_k127_3505172_2 Biopterin-dependent aromatic amino acid hydroxylase K00500 - 1.14.16.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 374.0
YYD1_k127_3505172_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003124 276.0
YYD1_k127_3505172_4 Protein of unknown function (DUF1232) - - - 0.000000000000000000000000000000000000009597 147.0
YYD1_k127_3505172_5 LTXXQ motif family protein - - - 0.0000000000000000000000000000000000001233 151.0
YYD1_k127_3505172_6 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K00058 - 1.1.1.26,1.1.1.399,1.1.1.95 0.000000000000000000000000000000002069 138.0
YYD1_k127_3505172_7 YHS domain - - - 0.00000000000000000000000000000001295 130.0
YYD1_k127_3505172_8 - - - - 0.00000000000000000000006465 103.0
YYD1_k127_3505172_9 - - - - 0.000000000003373 72.0
YYD1_k127_3514954_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0 1699.0
YYD1_k127_3514954_1 Oligopeptidase F K08602 - - 4.194e-247 775.0
YYD1_k127_3514954_11 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0003772 48.0
YYD1_k127_3514954_2 chorismate binding enzyme K13503 - 4.1.3.27 7.723e-209 673.0
YYD1_k127_3514954_3 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 1.736e-206 659.0
YYD1_k127_3514954_4 PFAM NAD dependent epimerase dehydratase family K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 436.0
YYD1_k127_3514954_5 Dicarboxylate transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 448.0
YYD1_k127_3514954_6 HpcH/HpaI aldolase/citrate lyase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000001084 259.0
YYD1_k127_3514954_7 Protein of unknown function (DUF429) - - - 0.0000000000000000000000000000000000000000000000000003798 194.0
YYD1_k127_3514954_8 Protein of unknown function (DUF1318) - - - 0.0000000000000000000000000000000000005578 144.0
YYD1_k127_3514954_9 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000005433 123.0
YYD1_k127_3515344_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1780.0
YYD1_k127_3515344_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 1.154e-292 908.0
YYD1_k127_3515344_2 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 454.0
YYD1_k127_3515344_3 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 355.0
YYD1_k127_3515344_4 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 343.0
YYD1_k127_3515344_5 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008563 268.0
YYD1_k127_3515344_6 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000001248 192.0
YYD1_k127_3515344_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000611 106.0
YYD1_k127_3515344_8 SNARE associated Golgi protein - - - 0.000000000000000000003165 102.0
YYD1_k127_3515344_9 Exopolysaccharide synthesis ExoD - - - 0.000000000000000000003355 105.0
YYD1_k127_3530089_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004537 331.0
YYD1_k127_3530089_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009355 297.0
YYD1_k127_3530089_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000009472 227.0
YYD1_k127_3530089_3 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000006577 211.0
YYD1_k127_3530089_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000000002662 182.0
YYD1_k127_3530089_5 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000002095 99.0
YYD1_k127_3530089_6 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000000000000000003444 97.0
YYD1_k127_3530089_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000005149 61.0
YYD1_k127_3530155_0 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 339.0
YYD1_k127_3530155_1 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003794 287.0
YYD1_k127_3530155_2 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000001299 186.0
YYD1_k127_3530155_3 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000000000001319 131.0
YYD1_k127_3530155_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000002095 99.0
YYD1_k127_3576014_0 MMPL family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 505.0
YYD1_k127_3576014_1 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 445.0
YYD1_k127_3576014_2 Bacterial lipid A biosynthesis acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004414 248.0
YYD1_k127_3576014_3 Beta-ketoacyl synthase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000001001 218.0
YYD1_k127_3576014_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000001014 121.0
YYD1_k127_3579139_0 ABC-type Fe3 transport system permease component K02011 - - 1.129e-313 975.0
YYD1_k127_3579139_1 Belongs to the TPP enzyme family K03336 - 3.7.1.22 1.288e-269 856.0
YYD1_k127_3579139_10 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 454.0
YYD1_k127_3579139_11 Xylose isomerase-like TIM barrel K03335 - 4.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004096 429.0
YYD1_k127_3579139_12 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 427.0
YYD1_k127_3579139_13 Required for the activity of the bacterial periplasmic transport system of putrescine K11069,K11073 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 409.0
YYD1_k127_3579139_14 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 381.0
YYD1_k127_3579139_15 KduI/IolB family K03337 - 5.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 348.0
YYD1_k127_3579139_16 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 342.0
YYD1_k127_3579139_17 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 331.0
YYD1_k127_3579139_18 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 340.0
YYD1_k127_3579139_19 PFAM Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 322.0
YYD1_k127_3579139_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.366e-254 794.0
YYD1_k127_3579139_20 Amidase K01426 - 3.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006597 321.0
YYD1_k127_3579139_21 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 304.0
YYD1_k127_3579139_22 KR domain K00034 - 1.1.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000598 298.0
YYD1_k127_3579139_23 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001855 275.0
YYD1_k127_3579139_24 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000005839 254.0
YYD1_k127_3579139_25 Sugar isomerase (SIS) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003676 252.0
YYD1_k127_3579139_26 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000007168 195.0
YYD1_k127_3579139_27 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000001065 201.0
YYD1_k127_3579139_28 Amidase K01426 - 3.5.1.4 0.00000000000000000000000004276 110.0
YYD1_k127_3579139_29 ABC-type spermidine putrescine transport system, permease component I K11075 - - 0.0000007529 52.0
YYD1_k127_3579139_3 Uncharacterized protein conserved in bacteria (DUF2090) K03338 - 2.7.1.92 1.098e-227 724.0
YYD1_k127_3579139_30 MoeA domain protein domain I and II K03750,K07219 - 2.10.1.1 0.0004132 44.0
YYD1_k127_3579139_4 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 607.0
YYD1_k127_3579139_5 Na phosphate symporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 561.0
YYD1_k127_3579139_6 Bacterial extracellular solute-binding protein K02012,K11081 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 533.0
YYD1_k127_3579139_7 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02049 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 473.0
YYD1_k127_3579139_8 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 468.0
YYD1_k127_3579139_9 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 461.0
YYD1_k127_3610259_0 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 564.0
YYD1_k127_3610259_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 313.0
YYD1_k127_3610259_2 (ABC) transporter K01995 - - 0.0000000000000000000000000000000000000000000000000001017 191.0
YYD1_k127_3610259_3 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.0000000000000000000004035 102.0
YYD1_k127_3611089_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1056.0
YYD1_k127_3611089_1 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 450.0
YYD1_k127_3611089_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 375.0
YYD1_k127_3611089_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 350.0
YYD1_k127_3611089_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000006184 216.0
YYD1_k127_3611089_5 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000002152 186.0
YYD1_k127_3611089_6 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000008657 172.0
YYD1_k127_3611089_7 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.00000000000000000000000000000000000000004094 161.0
YYD1_k127_3611089_8 - - - - 0.00001349 55.0
YYD1_k127_3623118_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038,K21977 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 513.0
YYD1_k127_3623118_1 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 513.0
YYD1_k127_3623118_2 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 490.0
YYD1_k127_3623118_3 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000975 362.0
YYD1_k127_3623118_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 328.0
YYD1_k127_3623118_5 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 327.0
YYD1_k127_3623118_6 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000005965 194.0
YYD1_k127_3623118_7 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.00000000000000000000000000000000000000000000000000004128 195.0
YYD1_k127_3623118_8 - - - - 0.00000000000000000000005703 109.0
YYD1_k127_3638465_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1033.0
YYD1_k127_3638465_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 2.789e-319 996.0
YYD1_k127_3638465_10 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000003531 134.0
YYD1_k127_3638465_11 GYD domain - - - 0.000000000000000000000000000001884 123.0
YYD1_k127_3638465_12 Protein of unknown function - - - 0.0000000000000000000000009152 110.0
YYD1_k127_3638465_13 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000003872 105.0
YYD1_k127_3638465_14 COG0515 Serine threonine protein kinase K12132 - 2.7.11.1 0.000006262 58.0
YYD1_k127_3638465_2 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.868e-207 680.0
YYD1_k127_3638465_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007445 501.0
YYD1_k127_3638465_4 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004231 471.0
YYD1_k127_3638465_5 Transcriptional regulator, AraC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 415.0
YYD1_k127_3638465_6 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 407.0
YYD1_k127_3638465_7 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008519 324.0
YYD1_k127_3638465_8 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 323.0
YYD1_k127_3638465_9 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000006705 228.0
YYD1_k127_3646557_0 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 415.0
YYD1_k127_3646557_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 343.0
YYD1_k127_3646557_2 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 333.0
YYD1_k127_3646557_3 Chaperone SurA K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 333.0
YYD1_k127_3646557_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 323.0
YYD1_k127_3646557_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 305.0
YYD1_k127_3646557_6 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 303.0
YYD1_k127_3646557_7 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 304.0
YYD1_k127_3658872_0 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001521 261.0
YYD1_k127_3658872_1 membrane protein terc - - - 0.000000000000000000000000000000000000000000000000000000000000000000000791 244.0
YYD1_k127_3658872_2 Universal stress protein family - - - 0.0000000000000000000000000000000000001123 146.0
YYD1_k127_3658872_3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.00009016 44.0
YYD1_k127_3692508_0 COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases K02230 - 6.6.1.2 0.0 1509.0
YYD1_k127_3692508_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 5.053e-200 634.0
YYD1_k127_3692508_10 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 315.0
YYD1_k127_3692508_11 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001546 286.0
YYD1_k127_3692508_12 PFAM Precorrin-8X methylmutase CbiC CobH K06042 - 5.4.99.60,5.4.99.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000009762 265.0
YYD1_k127_3692508_13 PFAM Response regulator receiver domain K15012 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000003452 252.0
YYD1_k127_3692508_14 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000000000000000002321 230.0
YYD1_k127_3692508_15 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.0000000000000000000000000000000000000000000000000000006697 199.0
YYD1_k127_3692508_16 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000468 193.0
YYD1_k127_3692508_17 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.00000000000000000000000000000000000000000000000004354 189.0
YYD1_k127_3692508_18 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00433,K01055 - 1.11.1.10,3.1.1.24 0.00000000000000000000000000000004345 134.0
YYD1_k127_3692508_2 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004485 487.0
YYD1_k127_3692508_3 Cobalamin synthesis protein cobW C-terminal domain K02234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 455.0
YYD1_k127_3692508_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 433.0
YYD1_k127_3692508_5 CbiX - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004547 426.0
YYD1_k127_3692508_6 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606,K20997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 380.0
YYD1_k127_3692508_7 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 354.0
YYD1_k127_3692508_8 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004211 356.0
YYD1_k127_3692508_9 Precorrin-6Y C5,15-methyltransferase K00595 - 2.1.1.132 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 331.0
YYD1_k127_3717710_0 ABC transporter, substrate-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 611.0
YYD1_k127_3717710_1 MlrC C-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 566.0
YYD1_k127_3717710_2 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 488.0
YYD1_k127_3717710_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 462.0
YYD1_k127_3717710_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 462.0
YYD1_k127_3717710_5 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 417.0
YYD1_k127_3717710_6 Pfam:AmoA K07120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 338.0
YYD1_k127_3717710_7 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000005288 232.0
YYD1_k127_3717710_8 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000001273 216.0
YYD1_k127_3717710_9 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.000000000000000000000000000003537 122.0
YYD1_k127_3718920_0 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 456.0
YYD1_k127_3718920_1 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000000000001758 205.0
YYD1_k127_3718920_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000188 151.0
YYD1_k127_3718920_3 - - - - 0.000000000000000000000000000008293 123.0
YYD1_k127_3718920_4 transport - - - 0.000000000000000007756 91.0
YYD1_k127_3718920_5 Sel1-like repeats. K13582 - - 0.000001196 59.0
YYD1_k127_3766234_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1351.0
YYD1_k127_3766234_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 4.999e-297 926.0
YYD1_k127_3766234_10 Protein of unknown function (DUF1223) - - - 0.000000000000000000000000000000000000000005481 161.0
YYD1_k127_3766234_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 496.0
YYD1_k127_3766234_3 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 442.0
YYD1_k127_3766234_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 421.0
YYD1_k127_3766234_5 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 404.0
YYD1_k127_3766234_6 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 388.0
YYD1_k127_3766234_7 Sugar (and other) transporter K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 306.0
YYD1_k127_3766234_8 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001355 263.0
YYD1_k127_3766234_9 COG2010 Cytochrome c, mono- and diheme variants - - - 0.0000000000000000000000000000000000000000009233 160.0
YYD1_k127_3767484_0 orn lys arg decarboxylase K01583 - 4.1.1.19 0.0 1169.0
YYD1_k127_3767484_1 Predicted Permease Membrane Region K07085 - - 5.083e-272 848.0
YYD1_k127_3767484_10 ABC transporter, phosphonate, periplasmic substrate-binding protein K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 344.0
YYD1_k127_3767484_11 mandelate racemase muconate lactonizing K01684 - 4.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 325.0
YYD1_k127_3767484_12 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 310.0
YYD1_k127_3767484_13 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001159 284.0
YYD1_k127_3767484_14 C4-dicarboxylate ABC transporter substrate-binding protein K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001566 282.0
YYD1_k127_3767484_15 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001782 274.0
YYD1_k127_3767484_16 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001732 260.0
YYD1_k127_3767484_17 Short-chain dehydrogenase reductase SDR K00059,K18337 - 1.1.1.100,1.1.1.173,1.1.1.377,1.1.1.378 0.000000000000000000000000000000000000000000000000000000000000000004324 233.0
YYD1_k127_3767484_18 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000001834 225.0
YYD1_k127_3767484_19 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000000002295 201.0
YYD1_k127_3767484_2 Thiamine pyrophosphate enzyme, central domain - - - 1.219e-249 791.0
YYD1_k127_3767484_20 IMP dehydrogenase activity - - - 0.0000000000000000000000000000000000000002542 154.0
YYD1_k127_3767484_21 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000005314 100.0
YYD1_k127_3767484_22 Protein conserved in bacteria - - - 0.00000000000004883 85.0
YYD1_k127_3767484_23 nitroreductase - - - 0.0000000000002026 73.0
YYD1_k127_3767484_3 PFAM Xanthine uracil vitamin C permease K02824 - - 9.445e-195 615.0
YYD1_k127_3767484_4 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 460.0
YYD1_k127_3767484_5 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 421.0
YYD1_k127_3767484_6 C-terminal domain of 1-Cys peroxiredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 402.0
YYD1_k127_3767484_7 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 392.0
YYD1_k127_3767484_8 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 380.0
YYD1_k127_3767484_9 Adenylate cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 356.0
YYD1_k127_3794825_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1277.0
YYD1_k127_3794825_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.435e-279 866.0
YYD1_k127_3794825_10 CO dehydrogenase flavoprotein C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009177 327.0
YYD1_k127_3794825_11 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 325.0
YYD1_k127_3794825_12 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 301.0
YYD1_k127_3794825_13 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 302.0
YYD1_k127_3794825_14 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005196 287.0
YYD1_k127_3794825_15 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000000000000000001847 186.0
YYD1_k127_3794825_16 Usg-like family - - - 0.00000000000000000000000000000000004051 139.0
YYD1_k127_3794825_17 - - - - 0.0000000000001418 72.0
YYD1_k127_3794825_18 Methyltransferase FkbM domain - - - 0.0000002235 63.0
YYD1_k127_3794825_2 Branched-chain amino acid transport system / permease component K01997,K01998 - - 5.642e-266 831.0
YYD1_k127_3794825_3 COG1180 Pyruvate-formate lyase-activating enzyme - - - 3.455e-255 794.0
YYD1_k127_3794825_4 Amidohydrolase family K15358 - 3.5.2.18 8.742e-205 643.0
YYD1_k127_3794825_5 Pyridine nucleotide-disulphide oxidoreductase - - - 1.301e-195 621.0
YYD1_k127_3794825_6 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611 534.0
YYD1_k127_3794825_7 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 440.0
YYD1_k127_3794825_8 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 350.0
YYD1_k127_3794825_9 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 340.0
YYD1_k127_3863726_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 3.799e-201 637.0
YYD1_k127_3863726_1 Extracellular solute-binding protein, family 5 middle family protein K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 612.0
YYD1_k127_3863726_10 5-aminolevulinic acid synthase K00643 - 2.3.1.37 0.0000000000000000000000000003515 115.0
YYD1_k127_3863726_2 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007233 603.0
YYD1_k127_3863726_3 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 510.0
YYD1_k127_3863726_4 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 505.0
YYD1_k127_3863726_5 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008144 490.0
YYD1_k127_3863726_6 N-terminal TM domain of oligopeptide transport permease C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 467.0
YYD1_k127_3863726_7 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 352.0
YYD1_k127_3863726_8 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000005184 257.0
YYD1_k127_3863726_9 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000721 203.0
YYD1_k127_3868429_0 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 0.0 2132.0
YYD1_k127_3868429_1 Respiratory nitrate reductase beta C-terminal K00371 - 1.7.5.1 1.41e-290 902.0
YYD1_k127_3868429_10 protein involved in response to NO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 317.0
YYD1_k127_3868429_11 phosphohistidine phosphatase, SixA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005881 258.0
YYD1_k127_3868429_12 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000004076 246.0
YYD1_k127_3868429_13 - - - - 0.0000000000000000000000000000000000000000000000000000000002563 221.0
YYD1_k127_3868429_14 Nitrate reductase delta subunit K00373 - - 0.0000000000000000000000000000000000000000000000000000002026 204.0
YYD1_k127_3868429_15 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K13642 - - 0.0000000000000000000000000000000000002146 150.0
YYD1_k127_3868429_16 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000002421 134.0
YYD1_k127_3868429_17 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000659 102.0
YYD1_k127_3868429_2 Major Facilitator Superfamily K02575 - - 5.665e-221 695.0
YYD1_k127_3868429_3 Major Facilitator Superfamily K02575 - - 4.612e-219 687.0
YYD1_k127_3868429_4 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 552.0
YYD1_k127_3868429_5 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 539.0
YYD1_k127_3868429_6 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 434.0
YYD1_k127_3868429_7 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 431.0
YYD1_k127_3868429_8 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 415.0
YYD1_k127_3868429_9 Nitrate reductase gamma subunit K00374 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 326.0
YYD1_k127_3869985_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 2.852e-318 982.0
YYD1_k127_3869985_1 PFAM adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 3.282e-225 717.0
YYD1_k127_3869985_2 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 541.0
YYD1_k127_3869985_3 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 525.0
YYD1_k127_3869985_4 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 403.0
YYD1_k127_3869985_5 COG0784 FOG CheY-like receiver K11443 - - 0.00000000000000000000000000000000000000000000000000000000000000002533 225.0
YYD1_k127_3869985_6 Domain of unknown function (DUF1849) - - - 0.0000000000000000000000000000000000000000000000000000000000003773 221.0
YYD1_k127_3869985_7 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000001021 122.0
YYD1_k127_3869985_8 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000001602 90.0
YYD1_k127_3881558_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1133.0
YYD1_k127_3881558_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 8.242e-234 746.0
YYD1_k127_3881558_10 Protein of unknown function (DUF983) - - - 0.0000000000000000000000000000000007615 134.0
YYD1_k127_3881558_11 Adenylate cyclase - - - 0.000000000000000000000000002071 114.0
YYD1_k127_3881558_12 Adenylate cyclase - - - 0.00000000000000000111 87.0
YYD1_k127_3881558_13 Adenylate cyclase - - - 0.0000000001848 63.0
YYD1_k127_3881558_14 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000001175 55.0
YYD1_k127_3881558_2 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 444.0
YYD1_k127_3881558_3 MarR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008609 401.0
YYD1_k127_3881558_4 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 369.0
YYD1_k127_3881558_5 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 356.0
YYD1_k127_3881558_6 SMP-30/Gluconolaconase/LRE-like region K14274 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 334.0
YYD1_k127_3881558_7 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 317.0
YYD1_k127_3881558_8 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001836 286.0
YYD1_k127_3881558_9 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000992 246.0
YYD1_k127_3902097_0 Proton-conducting membrane transporter - - - 1.601e-240 763.0
YYD1_k127_3902097_1 Proton-conducting membrane transporter K12141 - - 2.741e-211 666.0
YYD1_k127_3902097_10 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 507.0
YYD1_k127_3902097_11 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 464.0
YYD1_k127_3902097_12 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 465.0
YYD1_k127_3902097_13 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007554 443.0
YYD1_k127_3902097_14 oxidoreductase FAD NAD(P)-binding domain protein K14581 - 1.18.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008494 436.0
YYD1_k127_3902097_15 Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006619 432.0
YYD1_k127_3902097_16 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 426.0
YYD1_k127_3902097_17 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000987 421.0
YYD1_k127_3902097_18 COG1840 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 415.0
YYD1_k127_3902097_19 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 411.0
YYD1_k127_3902097_2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 6.161e-205 651.0
YYD1_k127_3902097_20 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 404.0
YYD1_k127_3902097_21 PFAM adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003011 406.0
YYD1_k127_3902097_22 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 383.0
YYD1_k127_3902097_23 Precorrin-4 K05936 - 2.1.1.133,2.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248 369.0
YYD1_k127_3902097_24 Phenylacetic acid catabolic protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 356.0
YYD1_k127_3902097_25 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232 340.0
YYD1_k127_3902097_26 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 325.0
YYD1_k127_3902097_27 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 329.0
YYD1_k127_3902097_28 COG4237 Hydrogenase 4 membrane component (E) K12140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 288.0
YYD1_k127_3902097_29 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000001561 243.0
YYD1_k127_3902097_3 CoA binding domain - - - 4.185e-196 636.0
YYD1_k127_3902097_30 Precorrin-6x reductase CbiJ/CobK K05895 - 1.3.1.106,1.3.1.54 0.000000000000000000000000000000000000000000000000000000000000000007631 235.0
YYD1_k127_3902097_31 protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000009393 194.0
YYD1_k127_3902097_32 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000001403 134.0
YYD1_k127_3902097_33 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000001178 128.0
YYD1_k127_3902097_34 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000001916 122.0
YYD1_k127_3902097_35 - - - - 0.00000000000000000000000003183 115.0
YYD1_k127_3902097_36 Ankyrin repeat - - - 0.0000000000000000000000001232 113.0
YYD1_k127_3902097_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 607.0
YYD1_k127_3902097_5 de-polymerase K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 532.0
YYD1_k127_3902097_6 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 502.0
YYD1_k127_3902097_7 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 501.0
YYD1_k127_3902097_8 Dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 496.0
YYD1_k127_3902097_9 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 494.0
YYD1_k127_3908159_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 2.22e-291 905.0
YYD1_k127_3908159_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 5.059e-255 796.0
YYD1_k127_3908159_10 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003491 285.0
YYD1_k127_3908159_11 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006537 287.0
YYD1_k127_3908159_12 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003372 273.0
YYD1_k127_3908159_13 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006814 244.0
YYD1_k127_3908159_14 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000004173 181.0
YYD1_k127_3908159_15 Aldehyde-activating protein - - - 0.0000000000000000000000000000000000000000000000008203 178.0
YYD1_k127_3908159_16 Stringent starvation protein B K09985 - - 0.0000000000000000000000000000000000000000000001109 173.0
YYD1_k127_3908159_17 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000009518 129.0
YYD1_k127_3908159_18 TfoX N-terminal domain K07343 GO:0006355,GO:0006810,GO:0007154,GO:0008150,GO:0009290,GO:0009292,GO:0009294,GO:0009605,GO:0009889,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0015931,GO:0019219,GO:0019222,GO:0030420,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031668,GO:0044087,GO:0044089,GO:0044093,GO:0044764,GO:0048518,GO:0048522,GO:0050657,GO:0050789,GO:0050794,GO:0050896,GO:0051027,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051704,GO:0051716,GO:0060255,GO:0060491,GO:0065007,GO:0065009,GO:0071496,GO:0071702,GO:0071705,GO:0080090,GO:0098657,GO:1903506,GO:1903656,GO:1903658,GO:2000112,GO:2001141 - 0.00000000000000000000001136 111.0
YYD1_k127_3908159_19 COG3209 Rhs family protein - - - 0.000000000000000000565 99.0
YYD1_k127_3908159_2 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.726e-213 670.0
YYD1_k127_3908159_20 Ribbon-helix-helix domain - - - 0.0000000000000000006871 88.0
YYD1_k127_3908159_21 TIGRFAM type I secretion outer membrane protein, TolC K12543 - - 0.0000000000000001618 87.0
YYD1_k127_3908159_22 localization factor protein PodJ K07126,K13582 - - 0.0000000000000001981 84.0
YYD1_k127_3908159_23 Putative beta-barrel porin 2 - - - 0.0000000004829 69.0
YYD1_k127_3908159_24 Bacterial protein of unknown function (DUF899) - - - 0.0000000005198 60.0
YYD1_k127_3908159_25 Transposase DDE domain - - - 0.0000000007242 66.0
YYD1_k127_3908159_26 Bacterial protein of unknown function (DUF899) - - - 0.000001952 52.0
YYD1_k127_3908159_28 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00005622 48.0
YYD1_k127_3908159_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 607.0
YYD1_k127_3908159_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 583.0
YYD1_k127_3908159_5 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 530.0
YYD1_k127_3908159_6 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007577 479.0
YYD1_k127_3908159_7 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007979 442.0
YYD1_k127_3908159_8 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 314.0
YYD1_k127_3908159_9 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 308.0
YYD1_k127_400771_0 Asp/Glu/Hydantoin racemase K01779 - 5.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003749 395.0
YYD1_k127_400771_1 Saccharopine dehydrogenase - - - 0.000000000000000000000000000000000000000005355 164.0
YYD1_k127_400771_2 Domain of unknown function (DUF1772) - - - 0.000000000000000000000000000000000805 147.0
YYD1_k127_400771_3 YGGT family K02221 - - 0.00000000000000000000000000000007282 128.0
YYD1_k127_4009837_0 Belongs to the GcvT family K19191 - 1.5.3.19 4.499e-306 962.0
YYD1_k127_4009837_1 Binding-protein-dependent transport system inner membrane component K02011 - - 1.33e-218 691.0
YYD1_k127_4009837_10 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 385.0
YYD1_k127_4009837_11 Choline/ethanolamine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 360.0
YYD1_k127_4009837_12 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 359.0
YYD1_k127_4009837_13 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001699 274.0
YYD1_k127_4009837_14 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001942 268.0
YYD1_k127_4009837_15 Transcriptional regulator, LysR family K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000001419 241.0
YYD1_k127_4009837_16 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000007705 199.0
YYD1_k127_4009837_17 spore germination - - - 0.0000000000000000000000000000000000000000000000000001163 197.0
YYD1_k127_4009837_18 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000000000000000000000000000001694 163.0
YYD1_k127_4009837_19 NUDIX domain - - - 0.000000000000000000000000000000000000001817 153.0
YYD1_k127_4009837_2 Prolyl oligopeptidase family - - - 5.204e-211 678.0
YYD1_k127_4009837_20 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000002779 93.0
YYD1_k127_4009837_21 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000009077 83.0
YYD1_k127_4009837_22 - - - - 0.000004554 52.0
YYD1_k127_4009837_23 FAD dependent oxidoreductase K19191 - 1.5.3.19 0.00001893 50.0
YYD1_k127_4009837_3 Aminotransferase class-III K00823 - 2.6.1.19 3.45e-210 662.0
YYD1_k127_4009837_4 Aldehyde dehydrogenase family - - - 3.32e-208 659.0
YYD1_k127_4009837_5 phosphonoacetate hydrolase K19670 - 3.11.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 567.0
YYD1_k127_4009837_6 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 515.0
YYD1_k127_4009837_7 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005393 509.0
YYD1_k127_4009837_8 TOBE domain K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 467.0
YYD1_k127_4009837_9 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000605 409.0
YYD1_k127_4041511_0 benzoyl-CoA oxygenase - - - 5.136e-259 803.0
YYD1_k127_4041511_1 Enoyl-CoA hydratase/isomerase - - - 3.279e-241 758.0
YYD1_k127_4041511_10 COG0477 Permeases of the major facilitator superfamily K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 366.0
YYD1_k127_4041511_11 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 357.0
YYD1_k127_4041511_12 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004704 353.0
YYD1_k127_4041511_13 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 331.0
YYD1_k127_4041511_14 Sugar (and other) transporter K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008782 296.0
YYD1_k127_4041511_15 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001537 263.0
YYD1_k127_4041511_16 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000001966 243.0
YYD1_k127_4041511_17 Coenzyme A transferase - - - 0.0000000000000000000000000000000000000000000000000000000002678 218.0
YYD1_k127_4041511_18 Belongs to the HpcH HpaI aldolase family K00979,K02510 - 2.7.7.38,4.1.2.52 0.00000000000000000000000000000000000000000000000000000007049 213.0
YYD1_k127_4041511_19 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000001122 187.0
YYD1_k127_4041511_2 PFAM AMP-dependent synthetase and ligase K04110 - 6.2.1.25 1.742e-228 719.0
YYD1_k127_4041511_20 - - - - 0.0000000000000000000000000000000000000111 152.0
YYD1_k127_4041511_21 transcriptional regulator - - - 0.000000000000000000000000000000000000013 149.0
YYD1_k127_4041511_22 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000001119 115.0
YYD1_k127_4041511_3 COG0744 Membrane carboxypeptidase (penicillin-binding protein) K05366 - 2.4.1.129,3.4.16.4 3.66e-214 685.0
YYD1_k127_4041511_4 Tripartite tricarboxylate transporter TctA family - - - 8.312e-204 653.0
YYD1_k127_4041511_5 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 8.736e-196 627.0
YYD1_k127_4041511_6 benzoyl-CoA oxygenase K15511 - 1.14.13.208 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 509.0
YYD1_k127_4041511_7 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 505.0
YYD1_k127_4041511_8 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005199 501.0
YYD1_k127_4041511_9 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 399.0
YYD1_k127_4068717_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 7.776e-206 658.0
YYD1_k127_4068717_1 NMT1-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 316.0
YYD1_k127_4068717_2 Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate K06989 - 1.4.1.21 0.000000000000000000000000000000000000000000000000000000183 203.0
YYD1_k127_4071560_0 malic enzyme K00029 - 1.1.1.40 0.0 1037.0
YYD1_k127_4071560_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 8.662e-294 907.0
YYD1_k127_4071560_10 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 346.0
YYD1_k127_4071560_11 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 306.0
YYD1_k127_4071560_12 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 300.0
YYD1_k127_4071560_13 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000001294 245.0
YYD1_k127_4071560_14 DSBA-like thioredoxin domain K14584 - 5.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000745 230.0
YYD1_k127_4071560_15 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000006674 221.0
YYD1_k127_4071560_16 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000008102 214.0
YYD1_k127_4071560_17 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.000000000000000000000000000000000000000000000000000000004183 205.0
YYD1_k127_4071560_18 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000000000000000000003819 195.0
YYD1_k127_4071560_19 Uncharacterized ACR, COG1993 K09137 - - 0.00000000000000000000000000000000000000000000000001238 181.0
YYD1_k127_4071560_2 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 8.022e-291 901.0
YYD1_k127_4071560_20 translation initiation inhibitor - - - 0.0000000000000000000000000000000000000000000003444 172.0
YYD1_k127_4071560_21 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000000001941 165.0
YYD1_k127_4071560_22 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000001353 151.0
YYD1_k127_4071560_23 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000000000000000000000001503 126.0
YYD1_k127_4071560_24 2TM domain - - - 0.0000000000000000000004599 96.0
YYD1_k127_4071560_25 Protein conserved in bacteria K09984 - - 0.000000000000000003731 94.0
YYD1_k127_4071560_26 - - - - 0.000000000003848 73.0
YYD1_k127_4071560_27 - K01611 - 4.1.1.50 0.00000000001561 69.0
YYD1_k127_4071560_28 Uncharacterized protein conserved in bacteria (DUF2059) - - - 0.0004736 50.0
YYD1_k127_4071560_3 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01965 - 6.4.1.3 3.522e-281 881.0
YYD1_k127_4071560_4 Biotin carboxylase C-terminal domain K01965,K01968,K13777 - 6.4.1.3,6.4.1.4,6.4.1.5 9.825e-278 869.0
YYD1_k127_4071560_5 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 3.497e-214 669.0
YYD1_k127_4071560_6 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 610.0
YYD1_k127_4071560_7 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 492.0
YYD1_k127_4071560_8 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 446.0
YYD1_k127_4071560_9 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 374.0
YYD1_k127_410297_0 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 484.0
YYD1_k127_410297_1 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000462 191.0
YYD1_k127_410297_2 TIGRFAM Diguanylate cyclase - - - 0.0000000000315 68.0
YYD1_k127_410297_3 oligosaccharyl transferase activity - - - 0.000004603 53.0
YYD1_k127_4121973_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.596e-286 887.0
YYD1_k127_4121973_1 peptidase U62, modulator of DNA gyrase K03568 - - 7.292e-230 719.0
YYD1_k127_4121973_10 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 467.0
YYD1_k127_4121973_11 cytochrome c oxidase K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 423.0
YYD1_k127_4121973_12 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 395.0
YYD1_k127_4121973_13 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008831 370.0
YYD1_k127_4121973_14 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 322.0
YYD1_k127_4121973_15 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002194 260.0
YYD1_k127_4121973_16 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000001073 240.0
YYD1_k127_4121973_17 PFAM Peptidase family M20 M25 M40 K01436 - - 0.00000000000000000000000000000000000000000000000000000000000000000009709 246.0
YYD1_k127_4121973_18 RNase H K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000006944 226.0
YYD1_k127_4121973_19 PFAM CMP dCMP deaminase zinc-binding K01487 - 3.5.4.3 0.00000000000000000000000000000000000000000000000000000000000006014 217.0
YYD1_k127_4121973_2 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 3.596e-206 653.0
YYD1_k127_4121973_20 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000000000000003392 213.0
YYD1_k127_4121973_21 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.00000000000000000000000000000000000000000000000000001048 197.0
YYD1_k127_4121973_22 methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000001586 191.0
YYD1_k127_4121973_23 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000002539 179.0
YYD1_k127_4121973_24 Protein of unknown function (DUF541) - - - 0.000000000000000000000000000000000000000000000003228 188.0
YYD1_k127_4121973_25 Protein of unknown function (DUF983) - - - 0.000000000000000000000000000000000000000000297 163.0
YYD1_k127_4121973_26 Iron-binding zinc finger CDGSH type - - - 0.00000000000000000000000000000007745 126.0
YYD1_k127_4121973_27 - - - - 0.00000000000000000000000001029 119.0
YYD1_k127_4121973_28 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.000000001068 65.0
YYD1_k127_4121973_29 - - - - 0.00003087 48.0
YYD1_k127_4121973_3 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 3.868e-197 623.0
YYD1_k127_4121973_4 Thiol disulfide interchange protein K04084,K08344 - 1.8.1.8 6.554e-195 631.0
YYD1_k127_4121973_5 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 617.0
YYD1_k127_4121973_6 glutamate--cysteine ligase K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 549.0
YYD1_k127_4121973_7 Glycine cleavage system T protein K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 503.0
YYD1_k127_4121973_8 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008678 488.0
YYD1_k127_4121973_9 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 490.0
YYD1_k127_4136264_0 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 573.0
YYD1_k127_4136264_1 Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations K01241 - 3.2.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 561.0
YYD1_k127_4136264_10 Alpha beta hydrolase K01055 - 3.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000481 271.0
YYD1_k127_4136264_11 PFAM binding-protein-dependent transport systems inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000006051 236.0
YYD1_k127_4136264_12 PFAM binding-protein-dependent transport systems inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000005326 218.0
YYD1_k127_4136264_13 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.0000000000000000000000000000000000000000000000051 190.0
YYD1_k127_4136264_2 Glutathione S-Transferase K07393 - 1.8.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000089 453.0
YYD1_k127_4136264_3 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 445.0
YYD1_k127_4136264_4 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 376.0
YYD1_k127_4136264_5 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 361.0
YYD1_k127_4136264_6 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 346.0
YYD1_k127_4136264_7 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 312.0
YYD1_k127_4136264_8 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007863 313.0
YYD1_k127_4136264_9 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 286.0
YYD1_k127_4163430_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000008478 87.0
YYD1_k127_4163430_1 Major Facilitator Superfamily - - - 0.0000000000001653 83.0
YYD1_k127_4163430_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000008715 65.0
YYD1_k127_4163430_3 FAD dependent oxidoreductase K07137 - - 0.0008797 51.0
YYD1_k127_4181494_0 Amidase, hydantoinase carbamoylase family K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 568.0
YYD1_k127_4181494_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 465.0
YYD1_k127_4181494_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002241 282.0
YYD1_k127_4181494_3 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000281 275.0
YYD1_k127_4211250_0 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 1.313e-226 711.0
YYD1_k127_4211250_1 Peptidase family M20/M25/M40 - - - 2.598e-219 690.0
YYD1_k127_4211250_10 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 351.0
YYD1_k127_4211250_11 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 347.0
YYD1_k127_4211250_12 ABC-type nitrate sulfonate bicarbonate transport system, permease component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 343.0
YYD1_k127_4211250_13 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 319.0
YYD1_k127_4211250_14 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002657 287.0
YYD1_k127_4211250_15 PFAM 20S proteasome, A and B subunits K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001263 279.0
YYD1_k127_4211250_16 allantoin biosynthetic process K13485 - 4.1.1.97 0.000000000000000000000000000000000000000000000281 181.0
YYD1_k127_4211250_17 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.0000000000000000000000000000000000000000514 162.0
YYD1_k127_4211250_18 HIUase/Transthyretin family K07127 - 3.5.2.17 0.00000000000000000000000000002174 130.0
YYD1_k127_4211250_2 Circularly permuted ATP-grasp type 2 - - - 2.238e-216 680.0
YYD1_k127_4211250_3 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K00830,K00839 - 2.6.1.112,2.6.1.44,2.6.1.45,2.6.1.51 8.796e-194 616.0
YYD1_k127_4211250_4 Polysaccharide deacetylase K01452 - 3.5.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 491.0
YYD1_k127_4211250_5 Peptidase family M28 K02083 - 3.5.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 447.0
YYD1_k127_4211250_6 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 411.0
YYD1_k127_4211250_7 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 406.0
YYD1_k127_4211250_8 Bacterial extracellular solute-binding protein K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 386.0
YYD1_k127_4211250_9 PFAM ABC transporter K02052,K11072 - 3.6.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 374.0
YYD1_k127_4212342_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 7.27e-231 728.0
YYD1_k127_4212342_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 336.0
YYD1_k127_4212342_10 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000000000001154 162.0
YYD1_k127_4212342_11 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000001175 164.0
YYD1_k127_4212342_12 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000009756 156.0
YYD1_k127_4212342_13 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000008063 117.0
YYD1_k127_4212342_14 Ribosomal protein L30 K02907 - - 0.00000000000000000001275 92.0
YYD1_k127_4212342_2 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001107 282.0
YYD1_k127_4212342_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003478 279.0
YYD1_k127_4212342_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000003334 234.0
YYD1_k127_4212342_5 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000001201 217.0
YYD1_k127_4212342_6 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000003379 207.0
YYD1_k127_4212342_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000001485 194.0
YYD1_k127_4212342_8 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000002297 194.0
YYD1_k127_4212342_9 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000004139 183.0
YYD1_k127_4233705_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 414.0
YYD1_k127_4233705_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 317.0
YYD1_k127_4233705_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000000000006599 156.0
YYD1_k127_4233705_3 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000001445 135.0
YYD1_k127_4233705_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000006577 105.0
YYD1_k127_4233705_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000004673 107.0
YYD1_k127_4233705_6 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000001478 73.0
YYD1_k127_4233705_7 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.00000000005533 64.0
YYD1_k127_4242764_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007393 567.0
YYD1_k127_4242764_1 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 362.0
YYD1_k127_4242764_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 343.0
YYD1_k127_4242764_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 313.0
YYD1_k127_4242764_4 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000001032 226.0
YYD1_k127_4242764_5 Belongs to the DegT DnrJ EryC1 family K05957 - 2.6.1.50 0.000000000000000000000000000000000000000000000000000000000006827 214.0
YYD1_k127_4242764_6 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000006654 166.0
YYD1_k127_4242764_7 Methyltransferase domain - - - 0.000000000000000000000000000005215 135.0
YYD1_k127_4275442_0 Domain of unknown function (DUF4175) - - - 2.489e-230 739.0
YYD1_k127_4275442_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 418.0
YYD1_k127_4276216_0 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 1.251e-198 628.0
YYD1_k127_4276216_1 COG3263 NhaP-type Na H and K H antiporters with a unique C-terminal domain K11105 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 577.0
YYD1_k127_4276216_10 Cupin superfamily (DUF985) K09705 - - 0.0000000000000000000000000000000000000000000000000000000000009376 214.0
YYD1_k127_4276216_11 chorismate mutase - - - 0.0000000000000000000000000000000000000000000000000000000001493 216.0
YYD1_k127_4276216_12 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000000000000000000004091 207.0
YYD1_k127_4276216_13 Uncharacterized protein conserved in bacteria (DUF2125) - - - 0.00000000000000000000000000000002038 141.0
YYD1_k127_4276216_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 456.0
YYD1_k127_4276216_3 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 350.0
YYD1_k127_4276216_4 prephenate dehydrogenase K00220 - 1.3.1.12,1.3.1.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006098 351.0
YYD1_k127_4276216_5 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000623 314.0
YYD1_k127_4276216_6 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 308.0
YYD1_k127_4276216_7 methionine biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001288 272.0
YYD1_k127_4276216_8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.000000000000000000000000000000000000000000000000000000000000000009594 228.0
YYD1_k127_4276216_9 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000002792 220.0
YYD1_k127_4284279_0 of ABC-type glycine betaine transport system K05845 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 389.0
YYD1_k127_4284279_1 Holin of 3TMs, for gene-transfer release - - - 0.000000000000000000000000000002962 124.0
YYD1_k127_4284279_4 Protein of unknown function (DUF2939) - - - 0.0000004817 59.0
YYD1_k127_4286882_0 Histidine kinase-like ATPases - - - 3.8e-322 1024.0
YYD1_k127_4286882_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 599.0
YYD1_k127_4286882_10 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000128 228.0
YYD1_k127_4286882_11 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000003301 232.0
YYD1_k127_4286882_12 PFAM Bacterial protein of - - - 0.000000000000000000000000000000000000000000000000000000000001959 214.0
YYD1_k127_4286882_13 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000002238 201.0
YYD1_k127_4286882_14 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000001781 191.0
YYD1_k127_4286882_15 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.0000000000000000000000000000000000000000000009069 182.0
YYD1_k127_4286882_16 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000000149 140.0
YYD1_k127_4286882_17 Protein of unknown function (DUF2948) - - - 0.0000000000000000000000000000000000109 147.0
YYD1_k127_4286882_18 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000004829 69.0
YYD1_k127_4286882_19 - - - - 0.000003373 51.0
YYD1_k127_4286882_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 558.0
YYD1_k127_4286882_3 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 344.0
YYD1_k127_4286882_4 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 329.0
YYD1_k127_4286882_5 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 323.0
YYD1_k127_4286882_6 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001204 259.0
YYD1_k127_4286882_7 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002308 258.0
YYD1_k127_4286882_8 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003874 250.0
YYD1_k127_4286882_9 Uncharacterised protein family (UPF0262) - - - 0.00000000000000000000000000000000000000000000000000000000000000000002746 236.0
YYD1_k127_4301538_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1027.0
YYD1_k127_4301538_1 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 403.0
YYD1_k127_4301538_2 COG4531 ABC-type Zn2 transport system, periplasmic component surface adhesin K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 328.0
YYD1_k127_4301538_3 ABC transporter K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 318.0
YYD1_k127_4301538_4 COG1108 ABC-type Mn2 Zn2 transport systems permease components K09816 GO:0000006,GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0042221,GO:0044464,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 312.0
YYD1_k127_4301538_5 Belongs to the Fur family K09823 - - 0.000000000000000000000000000000000000000000000000000004334 196.0
YYD1_k127_4301538_6 HupE / UreJ protein K03192 - - 0.00000000000000000000000000000000000000000002263 168.0
YYD1_k127_4301538_7 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000001345 162.0
YYD1_k127_4301538_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000002321 125.0
YYD1_k127_4301538_9 Major Facilitator Superfamily K08191 - - 0.0000000000000000000000000009999 132.0
YYD1_k127_4311369_0 Bacterial protein of unknown function (DUF839) K07093 - - 1.037e-239 758.0
YYD1_k127_4311369_1 Bacterial protein of unknown function (DUF839) K07093 - - 1.745e-237 756.0
YYD1_k127_4311369_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000008204 113.0
YYD1_k127_4311369_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000008715 65.0
YYD1_k127_4345281_0 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 604.0
YYD1_k127_4345281_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 537.0
YYD1_k127_4345281_10 With different specificities (related to short-chain alcohol - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 352.0
YYD1_k127_4345281_11 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 353.0
YYD1_k127_4345281_12 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 352.0
YYD1_k127_4345281_13 Phage plasmid primase P4 family K06919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 346.0
YYD1_k127_4345281_14 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 348.0
YYD1_k127_4345281_15 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 314.0
YYD1_k127_4345281_16 PFAM ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 324.0
YYD1_k127_4345281_17 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 319.0
YYD1_k127_4345281_18 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000554 297.0
YYD1_k127_4345281_19 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 291.0
YYD1_k127_4345281_2 amino acid K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 524.0
YYD1_k127_4345281_20 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004945 286.0
YYD1_k127_4345281_21 Belongs to the enoyl-CoA hydratase isomerase family K01692,K11264 - 4.1.1.41,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002537 270.0
YYD1_k127_4345281_22 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002037 287.0
YYD1_k127_4345281_23 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.000000000000000000000000000000000000000000000000000000000004617 218.0
YYD1_k127_4345281_24 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000000000000000000000000000001784 176.0
YYD1_k127_4345281_25 Cold shock protein domain K03704 - - 0.00000000000000000000000000000000000000000000151 172.0
YYD1_k127_4345281_26 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000008841 161.0
YYD1_k127_4345281_27 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000001374 145.0
YYD1_k127_4345281_28 Cyclophilin-like K09143 - - 0.0000000000000000000000000000000000004657 143.0
YYD1_k127_4345281_3 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008654 455.0
YYD1_k127_4345281_30 Ring hydroxylating subunit beta family protein 1 - - - 0.00000000000000000000000002755 115.0
YYD1_k127_4345281_31 PFAM FecR protein - - - 0.000000000000000000000006536 110.0
YYD1_k127_4345281_32 Cytochrome c - - - 0.000000000000000001176 92.0
YYD1_k127_4345281_33 ChaB K06197 - - 0.000000000000000007597 86.0
YYD1_k127_4345281_34 - - - - 0.0000000000001541 78.0
YYD1_k127_4345281_35 Transcriptional regulator - - - 0.000000000003227 74.0
YYD1_k127_4345281_36 Transposase DDE domain - - - 0.00001043 51.0
YYD1_k127_4345281_4 Rieske 2Fe-2S domain protein K14748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 431.0
YYD1_k127_4345281_5 COG5285 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 417.0
YYD1_k127_4345281_6 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 428.0
YYD1_k127_4345281_7 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 401.0
YYD1_k127_4345281_8 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 357.0
YYD1_k127_4345281_9 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000952 357.0
YYD1_k127_4369426_0 synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 469.0
YYD1_k127_4369426_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000002082 158.0
YYD1_k127_4369426_2 SnoaL-like domain - - - 0.0000000000000000000000000006014 124.0
YYD1_k127_4369426_3 Protein of unknown function (DUF1365) K09701 - - 0.00000000000000000000006143 100.0
YYD1_k127_4398666_0 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 7.881e-262 824.0
YYD1_k127_4398666_1 transport system fused permease components - - - 5.5e-241 763.0
YYD1_k127_4398666_10 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 416.0
YYD1_k127_4398666_11 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 404.0
YYD1_k127_4398666_12 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 345.0
YYD1_k127_4398666_13 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 316.0
YYD1_k127_4398666_14 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 318.0
YYD1_k127_4398666_15 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 314.0
YYD1_k127_4398666_16 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004084 278.0
YYD1_k127_4398666_17 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000003476 140.0
YYD1_k127_4398666_18 helix_turn_helix, Lux Regulon - - - 0.0000000000004437 81.0
YYD1_k127_4398666_2 COG0318, Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K02182,K20034 - 6.2.1.44,6.2.1.48 1.891e-225 710.0
YYD1_k127_4398666_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 576.0
YYD1_k127_4398666_4 transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 544.0
YYD1_k127_4398666_5 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 535.0
YYD1_k127_4398666_6 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 501.0
YYD1_k127_4398666_7 amp-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 508.0
YYD1_k127_4398666_8 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K18661 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 492.0
YYD1_k127_4398666_9 Metal-dependent hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 458.0
YYD1_k127_4415435_0 Na+ dependent nucleoside transporter C-terminus K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 530.0
YYD1_k127_4415435_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 486.0
YYD1_k127_4415435_2 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 283.0
YYD1_k127_4417573_0 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 0.0 1168.0
YYD1_k127_4417573_1 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 441.0
YYD1_k127_4417573_2 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 293.0
YYD1_k127_4417573_3 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 289.0
YYD1_k127_4417573_4 Hemimethylated DNA-binding protein YccV like K11940 - - 0.000000000000000000000000000000000000000004013 173.0
YYD1_k127_4417573_5 transcriptional regulator K04761 - - 0.0000000000000000000000000000000000000001678 154.0
YYD1_k127_4417573_7 Major facilitator Superfamily - - - 0.00000000000000000000004885 113.0
YYD1_k127_4417573_8 - - - - 0.000000000000623 73.0
YYD1_k127_4417573_9 Fe-S protein K06938 - - 0.000001606 50.0
YYD1_k127_4423667_0 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 338.0
YYD1_k127_4423667_1 Protein of unknown function (DUF1194) - - - 0.00000000000000000000000000000000000000000000000000002202 197.0
YYD1_k127_4423667_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000000000000000000000000000000000000000003714 162.0
YYD1_k127_4423667_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000008802 143.0
YYD1_k127_4423667_4 - - - - 0.0000000000000000634 82.0
YYD1_k127_4453046_0 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.0 1432.0
YYD1_k127_4453046_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 2.058e-284 891.0
YYD1_k127_4453046_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000009773 206.0
YYD1_k127_4453046_11 protein conserved in bacteria K09921 - - 0.000000000000000000000000000000000000000000000000000000007495 224.0
YYD1_k127_4453046_12 Exopolysaccharide synthesis, ExoD - - - 0.000000000000000000000000000000000000000000001512 172.0
YYD1_k127_4453046_13 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000007848 86.0
YYD1_k127_4453046_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 6.282e-275 851.0
YYD1_k127_4453046_3 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 9.458e-209 659.0
YYD1_k127_4453046_4 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 540.0
YYD1_k127_4453046_5 Alpha beta hydrolase K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005142 494.0
YYD1_k127_4453046_6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 405.0
YYD1_k127_4453046_7 Phage integrase, N-terminal SAM-like domain K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 373.0
YYD1_k127_4453046_8 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 342.0
YYD1_k127_4453046_9 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003877 269.0
YYD1_k127_4453241_0 Formate dehydrogenase subunit alpha - - - 0.0 1434.0
YYD1_k127_4453241_1 Dehydrogenase K00122 - 1.17.1.9 2.55e-280 870.0
YYD1_k127_4453241_2 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001699 259.0
YYD1_k127_4453241_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000137 82.0
YYD1_k127_446952_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 2.03e-205 653.0
YYD1_k127_446952_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 577.0
YYD1_k127_446952_10 Protein of unknown function - - - 0.000000000000000000000000000000000000000007262 158.0
YYD1_k127_446952_11 MreB/Mbl protein K04044 - - 0.000000000000000000000004229 103.0
YYD1_k127_446952_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 414.0
YYD1_k127_446952_3 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 386.0
YYD1_k127_446952_4 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 328.0
YYD1_k127_446952_5 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007362 325.0
YYD1_k127_446952_6 transcriptional regulator K13643 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005809 247.0
YYD1_k127_446952_7 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488,K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000002021 234.0
YYD1_k127_446952_8 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.00000000000000000000000000000000000000000000000000009319 193.0
YYD1_k127_446952_9 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000004306 191.0
YYD1_k127_4531966_0 ABC-type sugar transport system periplasmic component K02027,K05813,K17244 - - 6.547e-213 668.0
YYD1_k127_4531966_1 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 605.0
YYD1_k127_4531966_10 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000002654 154.0
YYD1_k127_4531966_11 - - - - 0.00000000000000000000000000000001717 133.0
YYD1_k127_4531966_12 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives - - - 0.000000000000001185 83.0
YYD1_k127_4531966_13 - - - - 0.00000000000000189 85.0
YYD1_k127_4531966_14 Transposase DDE domain - - - 0.00000000001986 69.0
YYD1_k127_4531966_15 Transposase DDE domain - - - 0.0000000000889 67.0
YYD1_k127_4531966_2 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 538.0
YYD1_k127_4531966_3 COG3839 ABC-type sugar transport systems, ATPase components K05816 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006945 461.0
YYD1_k127_4531966_4 Binding-protein-dependent transport system inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 436.0
YYD1_k127_4531966_5 Binding-protein-dependent transport system inner membrane component K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 436.0
YYD1_k127_4531966_6 COG1194 A G-specific DNA glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 433.0
YYD1_k127_4531966_7 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 412.0
YYD1_k127_4531966_8 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000001203 241.0
YYD1_k127_4531966_9 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000001357 190.0
YYD1_k127_453604_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1356.0
YYD1_k127_453604_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 2.834e-242 766.0
YYD1_k127_453604_10 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000003619 159.0
YYD1_k127_453604_11 transcriptional regulator - - - 0.000000000000000000000000000000000009685 141.0
YYD1_k127_453604_12 - - - - 0.0000000000000001116 87.0
YYD1_k127_453604_2 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 491.0
YYD1_k127_453604_3 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 439.0
YYD1_k127_453604_4 Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 428.0
YYD1_k127_453604_5 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 392.0
YYD1_k127_453604_6 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 334.0
YYD1_k127_453604_7 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000073 327.0
YYD1_k127_453604_8 Protein of unknown function (DUF3035) - - - 0.0000000000000000000000000000000000000000000000000000001325 200.0
YYD1_k127_453604_9 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000000000000000002872 199.0
YYD1_k127_4550681_0 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 3.107e-194 621.0
YYD1_k127_4550681_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 475.0
YYD1_k127_4550681_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 444.0
YYD1_k127_4550681_3 Penicillin amidase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 335.0
YYD1_k127_4550681_4 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007774 276.0
YYD1_k127_4550681_5 BioY family K03523 - - 0.00000000000000000000000000000000000000000000000000000000000000009778 227.0
YYD1_k127_4550681_6 Class II aldolase K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000006938 203.0
YYD1_k127_4550681_7 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000002262 193.0
YYD1_k127_4550681_8 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.00000000000000000000008952 98.0
YYD1_k127_4550681_9 RDD family - - - 0.00008035 51.0
YYD1_k127_4584625_0 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 1.574e-258 801.0
YYD1_k127_4584625_1 transport system fused permease components - - - 2.562e-243 768.0
YYD1_k127_4584625_10 NMT1-like family - - - 0.000000003523 57.0
YYD1_k127_4584625_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 1.351e-201 636.0
YYD1_k127_4584625_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 512.0
YYD1_k127_4584625_4 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 507.0
YYD1_k127_4584625_5 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 496.0
YYD1_k127_4584625_6 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.000000000000000000000000000000000000000000000000000000000000000009594 228.0
YYD1_k127_4584625_7 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000002418 181.0
YYD1_k127_4584625_8 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000003684 186.0
YYD1_k127_4584625_9 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.000000000003739 66.0
YYD1_k127_4594345_0 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007846 365.0
YYD1_k127_4594345_1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004286 276.0
YYD1_k127_4594345_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000009362 185.0
YYD1_k127_4615188_0 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 411.0
YYD1_k127_4615188_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 329.0
YYD1_k127_4615188_2 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003004 261.0
YYD1_k127_4615188_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000002901 222.0
YYD1_k127_4615188_4 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000004625 172.0
YYD1_k127_4625022_0 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 335.0
YYD1_k127_4625022_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007931 333.0
YYD1_k127_4625022_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005047 316.0
YYD1_k127_4625022_3 - - - - 0.0000000000000000000000000000000000004822 152.0
YYD1_k127_4648315_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.493e-224 704.0
YYD1_k127_4648315_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 548.0
YYD1_k127_4648315_2 HemY protein N-terminus K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 395.0
YYD1_k127_4648315_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009039 290.0
YYD1_k127_4648315_4 COG1587 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000001092 149.0
YYD1_k127_4648315_5 - - - - 0.0000006857 53.0
YYD1_k127_4653984_0 Zn-dependent protease, contains TPR repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 453.0
YYD1_k127_4654716_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K15738 - - 1.092e-196 631.0
YYD1_k127_4654716_1 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009868 415.0
YYD1_k127_4654716_2 Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003838 264.0
YYD1_k127_4654716_3 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily K15268 - - 0.0000000000000000000000000000000000000000000000000000000000000003025 225.0
YYD1_k127_4654716_4 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000001165 175.0
YYD1_k127_4662794_0 Heat shock 70 kDa protein K04043 - - 0.0 1026.0
YYD1_k127_4662794_1 GTP-binding protein TypA K06207 - - 4.47e-305 944.0
YYD1_k127_4662794_10 Acetyl-coenzyme A transporter 1 K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 490.0
YYD1_k127_4662794_11 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 459.0
YYD1_k127_4662794_12 COG3540 Phosphodiesterase alkaline phosphatase D K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 448.0
YYD1_k127_4662794_13 ATPase with chaperone activity K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 443.0
YYD1_k127_4662794_14 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 427.0
YYD1_k127_4662794_15 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 377.0
YYD1_k127_4662794_16 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 356.0
YYD1_k127_4662794_17 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 325.0
YYD1_k127_4662794_18 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 321.0
YYD1_k127_4662794_19 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 317.0
YYD1_k127_4662794_2 Acetyltransferase (GNAT) domain K01905,K09181,K22224 - 6.2.1.13 6.02e-268 844.0
YYD1_k127_4662794_20 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000442 311.0
YYD1_k127_4662794_21 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000008678 269.0
YYD1_k127_4662794_22 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007244 265.0
YYD1_k127_4662794_23 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000009021 213.0
YYD1_k127_4662794_24 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000031 205.0
YYD1_k127_4662794_25 Etoposide-induced protein 2.4 (EI24) K06203 - - 0.00000000000000000000000000000000000000000000000004536 187.0
YYD1_k127_4662794_26 periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000000003862 190.0
YYD1_k127_4662794_27 Extensin-like protein C-terminus - - - 0.0000000000000000000000000000000000000000000001382 175.0
YYD1_k127_4662794_28 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.000000000000000000000000000000000000000002097 166.0
YYD1_k127_4662794_29 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000004222 173.0
YYD1_k127_4662794_3 Adenylate cyclase - - - 2.96e-223 706.0
YYD1_k127_4662794_30 RES - - - 0.00000000000000000000000000000000000008768 154.0
YYD1_k127_4662794_31 integral membrane protein - - - 0.0000000000000000000000000000000000129 141.0
YYD1_k127_4662794_32 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000001811 143.0
YYD1_k127_4662794_33 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000001043 138.0
YYD1_k127_4662794_34 Transcriptional regulator - - - 0.000000003915 64.0
YYD1_k127_4662794_4 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 594.0
YYD1_k127_4662794_5 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 593.0
YYD1_k127_4662794_6 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 503.0
YYD1_k127_4662794_7 FAD binding domain K00103 - 1.1.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 505.0
YYD1_k127_4662794_8 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006329 488.0
YYD1_k127_4662794_9 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 484.0
YYD1_k127_4667878_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 9.748e-250 789.0
YYD1_k127_4667878_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305 591.0
YYD1_k127_4667878_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 550.0
YYD1_k127_4667878_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 359.0
YYD1_k127_4667878_4 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 350.0
YYD1_k127_4667878_5 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007969 316.0
YYD1_k127_4714722_0 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 426.0
YYD1_k127_4714722_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000001916 122.0
YYD1_k127_4715125_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1420.0
YYD1_k127_4715125_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 4.054e-316 986.0
YYD1_k127_4715125_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007854 373.0
YYD1_k127_4715125_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 352.0
YYD1_k127_4715125_4 transcriptional regulator - - - 0.00000000000000000000000000000000000001532 153.0
YYD1_k127_4715125_5 - - - - 0.0000000000000000005491 91.0
YYD1_k127_4715125_6 Major Facilitator Superfamily - - - 0.000000000002052 70.0
YYD1_k127_4715125_7 Recombinase zinc beta ribbon domain - - - 0.000000003995 61.0
YYD1_k127_47206_0 Transport of potassium into the cell K03549 - - 9.243e-209 667.0
YYD1_k127_47206_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003502 299.0
YYD1_k127_47206_2 Phage portal protein - - - 0.00000000000000000000000000000000000001585 151.0
YYD1_k127_47206_3 Phage prohead protease, HK97 family - - - 0.0000000000000000000000000000000000001316 156.0
YYD1_k127_47206_4 GYD domain - - - 0.00000000000000000000000000001317 122.0
YYD1_k127_47206_5 domain, Protein - - - 0.000105 52.0
YYD1_k127_4727827_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1312.0
YYD1_k127_4727827_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007759 605.0
YYD1_k127_4727827_10 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000008688 255.0
YYD1_k127_4727827_11 NIPSNAP family containing protein - - - 0.00000000000000000000000000000000000000000001901 164.0
YYD1_k127_4727827_12 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000000000000001456 127.0
YYD1_k127_4727827_13 Domain of unknown function (DUF4167) - - - 0.0000000000000000000000000159 115.0
YYD1_k127_4727827_14 Transposase - - - 0.00000000000009568 82.0
YYD1_k127_4727827_15 Bacterial transcription activator, effector binding domain K13652 - - 0.000000248 53.0
YYD1_k127_4727827_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 553.0
YYD1_k127_4727827_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005982 519.0
YYD1_k127_4727827_4 PFAM Patatin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 471.0
YYD1_k127_4727827_5 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 363.0
YYD1_k127_4727827_6 Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 321.0
YYD1_k127_4727827_7 transport system periplasmic component K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 305.0
YYD1_k127_4727827_8 MOSC N-terminal beta barrel domain K07140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003516 271.0
YYD1_k127_4727827_9 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000002976 264.0
YYD1_k127_4741086_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.606e-225 705.0
YYD1_k127_4741086_1 transhydrogenase subunit alpha K00324 GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 451.0
YYD1_k127_4741086_10 Protein of unknown function (DUF465) - - - 0.00000000000000000002118 93.0
YYD1_k127_4741086_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 439.0
YYD1_k127_4741086_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 318.0
YYD1_k127_4741086_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000001719 235.0
YYD1_k127_4741086_5 AIR carboxylase K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000006306 224.0
YYD1_k127_4741086_6 COQ9 K18587 - - 0.000000000000000000000000000000000000000000000000000000000000001043 225.0
YYD1_k127_4741086_7 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000000000000000002905 154.0
YYD1_k127_4741086_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000007665 111.0
YYD1_k127_4755525_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 3.538e-280 876.0
YYD1_k127_4755525_1 Glycosyl transferase 4-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006239 418.0
YYD1_k127_4755525_10 ABC-2 type transporter K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000002706 229.0
YYD1_k127_4755525_11 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000001507 226.0
YYD1_k127_4755525_12 epimerase - - - 0.000000000000000000000000000000000000000001795 175.0
YYD1_k127_4755525_13 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000746 149.0
YYD1_k127_4755525_14 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000002324 134.0
YYD1_k127_4755525_15 - - - - 0.0000000000001341 84.0
YYD1_k127_4755525_16 Asparagine synthase K01953 - 6.3.5.4 0.0000000004524 64.0
YYD1_k127_4755525_2 PFAM Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007057 371.0
YYD1_k127_4755525_3 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000323 366.0
YYD1_k127_4755525_4 pfam abc K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 363.0
YYD1_k127_4755525_5 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 351.0
YYD1_k127_4755525_6 Ribosomal protein L11 methyltransferase (PrmA) K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004126 342.0
YYD1_k127_4755525_7 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 308.0
YYD1_k127_4755525_8 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003569 253.0
YYD1_k127_4755525_9 peptidoglycan biosynthetic process K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000004672 246.0
YYD1_k127_4815239_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1180.0
YYD1_k127_4815239_1 COG0471 Di- and tricarboxylate transporters - - - 1.336e-194 623.0
YYD1_k127_4815239_10 Putative 2OG-Fe(II) oxygenase - - - 0.00000000000000000000000000000000000002335 153.0
YYD1_k127_4815239_11 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.000000000000000000000000000000000008768 142.0
YYD1_k127_4815239_12 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.00000000000000000000000000009059 125.0
YYD1_k127_4815239_2 PAS fold K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 532.0
YYD1_k127_4815239_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 467.0
YYD1_k127_4815239_4 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 375.0
YYD1_k127_4815239_5 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 374.0
YYD1_k127_4815239_6 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007333 357.0
YYD1_k127_4815239_7 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 334.0
YYD1_k127_4815239_8 glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008967 316.0
YYD1_k127_4815239_9 EVE domain - - - 0.00000000000000000000000000000000000000000000000000002643 192.0
YYD1_k127_4819412_0 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008716 303.0
YYD1_k127_4819412_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006076 268.0
YYD1_k127_4819412_2 - - - - 0.000000000000000000000000000000006403 132.0
YYD1_k127_4819412_3 DNA repair protein MmcB-like - - - 0.0000000000000000000000000000004531 137.0
YYD1_k127_4819412_4 - - - - 0.0000000000000000000000000003741 122.0
YYD1_k127_4819412_5 Psort location Extracellular, score - - - 0.0000000000000008186 84.0
YYD1_k127_4819412_6 - - - - 0.000000000009519 76.0
YYD1_k127_4819412_7 Type III secretion system lipoprotein chaperone (YscW) K09914 - - 0.00000000003006 75.0
YYD1_k127_4849088_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1144.0
YYD1_k127_4849088_1 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 489.0
YYD1_k127_4849088_2 Pyridoxal-phosphate dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009657 479.0
YYD1_k127_4849088_3 COG1131 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009298 434.0
YYD1_k127_4849088_4 Two component transcriptional regulator, winged helix family K14981 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 430.0
YYD1_k127_4849088_5 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001407 252.0
YYD1_k127_4849088_6 Probable cobalt transporter subunit (CbtA) - - - 0.00000000000000000000000000000000000000000000000000000001722 207.0
YYD1_k127_4849088_7 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000008269 194.0
YYD1_k127_4849088_8 Zinc-finger domain - - - 0.0000000000000000007782 89.0
YYD1_k127_4859909_0 Sulfide dehydrogenase K17229 - 1.8.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 509.0
YYD1_k127_4859909_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000002721 140.0
YYD1_k127_4859909_2 Sulphur oxidation protein SoxZ K17227 - - 0.0000000000000000000000000000004129 132.0
YYD1_k127_4859909_3 sulfur oxidation protein (SoxY) K17226 - - 0.000000000000000000000000000005164 126.0
YYD1_k127_4859909_4 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000007032 126.0
YYD1_k127_4859909_5 cytochrome - - - 0.0000000000000005139 83.0
YYD1_k127_4859909_6 Sulphur transport K07112 - - 0.00007884 45.0
YYD1_k127_4859909_7 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0008041 47.0
YYD1_k127_4887897_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1768.0
YYD1_k127_4887897_1 Glycosyl transferase family group 2 - - - 6.603e-264 841.0
YYD1_k127_4887897_10 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000001145 229.0
YYD1_k127_4887897_11 Chlorite dismutase - - - 0.0000000000000000000000000000000000000000000000000000000000001377 219.0
YYD1_k127_4887897_12 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000004495 187.0
YYD1_k127_4887897_13 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000002668 184.0
YYD1_k127_4887897_14 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000004181 169.0
YYD1_k127_4887897_15 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000005495 160.0
YYD1_k127_4887897_16 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000001954 157.0
YYD1_k127_4887897_17 NADH ubiquinone oxidoreductase 17.2 kD subunit - - - 0.0000000000000000000000000000000000000005751 153.0
YYD1_k127_4887897_18 protein conserved in bacteria - - - 0.00000000000000000000000000000000000002032 152.0
YYD1_k127_4887897_19 transport - - - 0.0000000000001968 76.0
YYD1_k127_4887897_2 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 9.278e-223 699.0
YYD1_k127_4887897_3 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 569.0
YYD1_k127_4887897_4 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007529 556.0
YYD1_k127_4887897_5 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 468.0
YYD1_k127_4887897_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 433.0
YYD1_k127_4887897_7 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006986 285.0
YYD1_k127_4887897_8 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002243 276.0
YYD1_k127_4887897_9 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000002981 236.0
YYD1_k127_4899439_0 COG1960 Acyl-CoA dehydrogenases K14448 - 1.3.8.12 1.409e-213 676.0
YYD1_k127_4899439_1 Dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 462.0
YYD1_k127_4899439_10 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000000000001209 237.0
YYD1_k127_4899439_11 Bacterial protein of unknown function (DUF898) - - - 0.0000000000000000000000000000000000000000000000002722 190.0
YYD1_k127_4899439_12 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000004475 178.0
YYD1_k127_4899439_13 bond formation protein, DsbB - - - 0.00000000000000000000000000000000000000000003404 167.0
YYD1_k127_4899439_14 ribonuclease - GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000009954 158.0
YYD1_k127_4899439_15 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000004862 134.0
YYD1_k127_4899439_16 Barstar (barnase inhibitor) K03623 - - 0.0000000000001056 76.0
YYD1_k127_4899439_17 Hypoxia induced protein conserved region - - - 0.000000001015 62.0
YYD1_k127_4899439_18 Glycosyl transferase family 21 - - - 0.00000001368 58.0
YYD1_k127_4899439_2 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 442.0
YYD1_k127_4899439_3 Electron transfer flavoprotein, beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 397.0
YYD1_k127_4899439_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 383.0
YYD1_k127_4899439_5 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 332.0
YYD1_k127_4899439_6 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 324.0
YYD1_k127_4899439_7 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002585 289.0
YYD1_k127_4899439_8 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007635 275.0
YYD1_k127_4899439_9 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001297 239.0
YYD1_k127_4901444_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0 1091.0
YYD1_k127_4901444_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 4.58e-305 948.0
YYD1_k127_4901444_10 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000000000000000004625 186.0
YYD1_k127_4901444_11 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000001906 164.0
YYD1_k127_4901444_12 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000000000009656 134.0
YYD1_k127_4901444_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 372.0
YYD1_k127_4901444_3 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 370.0
YYD1_k127_4901444_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 332.0
YYD1_k127_4901444_5 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009748 307.0
YYD1_k127_4901444_6 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 308.0
YYD1_k127_4901444_7 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003081 280.0
YYD1_k127_4901444_8 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000001135 277.0
YYD1_k127_4901444_9 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000008124 243.0
YYD1_k127_493_0 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001972 263.0
YYD1_k127_493_1 - - - - 0.0000000000000000000000000001047 117.0
YYD1_k127_493_2 Domain of unknown function (DUF1772) - - - 0.00000000000000000119 91.0
YYD1_k127_493_3 acyl-CoA transferase - - - 0.000000000000000002153 94.0
YYD1_k127_497586_0 Catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive - - - 6.808e-293 908.0
YYD1_k127_497586_1 COG1012 NAD-dependent aldehyde dehydrogenases K13922,K15515 - 1.2.1.81,1.2.1.87 1.36e-238 753.0
YYD1_k127_497586_2 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005573 456.0
YYD1_k127_497586_3 Protein of unknown function (DUF3179) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000436 461.0
YYD1_k127_497586_4 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 353.0
YYD1_k127_497586_5 Xylose isomerase domain protein TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 307.0
YYD1_k127_497586_6 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000001481 171.0
YYD1_k127_497586_7 HMGL-like K01640 - 4.1.3.4 0.00000289 57.0
YYD1_k127_4988195_0 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000009566 252.0
YYD1_k127_4995527_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1107.0
YYD1_k127_4995527_1 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 304.0
YYD1_k127_4995527_2 TIGRFAM type I secretion membrane fusion protein, HlyD family K12542 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005444 278.0
YYD1_k127_4995527_3 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000378 200.0
YYD1_k127_4995527_4 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000000000000003328 118.0
YYD1_k127_4995527_5 - - - - 0.0000000000000000000000000005303 121.0
YYD1_k127_4995527_6 tryptophan synthase subunit beta - - - 0.0000000000000001575 83.0
YYD1_k127_4995527_7 - - - - 0.0000000000006201 78.0
YYD1_k127_4999047_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1307.0
YYD1_k127_4999047_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K08323 - 4.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000001197 224.0
YYD1_k127_4999047_2 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000000000000001205 219.0
YYD1_k127_4999047_3 pkhd-type hydroxylase K07336 - - 0.0000000000000000000000000000000000000000000000000000000003342 210.0
YYD1_k127_4999047_4 Domain of unknown function (DUF3576) - - - 0.0000000000000000000000000000000000000000000000000000000453 201.0
YYD1_k127_4999047_5 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000001577 167.0
YYD1_k127_4999047_6 Rhs Family - - - 0.000000000000000008313 88.0
YYD1_k127_5000942_0 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 9.291e-237 740.0
YYD1_k127_5000942_1 ABC transporter, ATP-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 422.0
YYD1_k127_5000942_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 405.0
YYD1_k127_5000942_3 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 374.0
YYD1_k127_5000942_4 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 316.0
YYD1_k127_5000942_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009124 257.0
YYD1_k127_5000942_6 OstA-like protein K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000008189 247.0
YYD1_k127_5000942_7 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000000000000000000000001538 201.0
YYD1_k127_5061432_0 glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 518.0
YYD1_k127_5061432_1 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 483.0
YYD1_k127_5061432_2 Peptidase family S49 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 316.0
YYD1_k127_5061432_3 Methyltransferase small domain - - - 0.000000000000000000000000000000000000000000000000000000000000009147 224.0
YYD1_k127_5061432_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000001991 199.0
YYD1_k127_5061432_5 Putative prokaryotic signal transducing protein - - - 0.00000000000000002572 85.0
YYD1_k127_5061432_6 Cytochrome C556 - - - 0.0000000000203 72.0
YYD1_k127_5061432_7 - - - - 0.0000000001011 66.0
YYD1_k127_506904_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1060.0
YYD1_k127_506904_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 487.0
YYD1_k127_506904_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 328.0
YYD1_k127_506904_3 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 314.0
YYD1_k127_506904_4 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006569 279.0
YYD1_k127_506904_5 Dioxygenase K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000004851 237.0
YYD1_k127_506904_6 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.0000000000000000000000000000000000000000000000000005591 189.0
YYD1_k127_506904_7 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000000000003917 186.0
YYD1_k127_506904_8 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000000000008629 149.0
YYD1_k127_506904_9 Belongs to the BolA IbaG family - - - 0.000000000000000000000000000000002249 131.0
YYD1_k127_5069281_0 Tripartite tricarboxylate transporter TctA family - - - 9.473e-200 633.0
YYD1_k127_5069281_1 Putative sugar-binding N-terminal domain K21948 - 2.7.1.217 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 483.0
YYD1_k127_5069281_10 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 400.0
YYD1_k127_5069281_11 3-beta hydroxysteroid dehydrogenase/isomerase family K18981 - 1.1.1.203 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 375.0
YYD1_k127_5069281_12 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 380.0
YYD1_k127_5069281_13 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 348.0
YYD1_k127_5069281_14 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 334.0
YYD1_k127_5069281_15 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 335.0
YYD1_k127_5069281_16 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004584 316.0
YYD1_k127_5069281_17 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001559 281.0
YYD1_k127_5069281_18 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001099 275.0
YYD1_k127_5069281_19 Pfam Major Facilitator Superfamily K08223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002805 280.0
YYD1_k127_5069281_2 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 465.0
YYD1_k127_5069281_20 Class II Aldolase and Adducin N-terminal domain K22130 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0019321,GO:0019323,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0071704,GO:1901575 4.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000006727 266.0
YYD1_k127_5069281_21 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009317 258.0
YYD1_k127_5069281_22 - - - - 0.000000000000000006231 90.0
YYD1_k127_5069281_23 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.0000000000000006306 82.0
YYD1_k127_5069281_24 - - - - 0.00000000003807 72.0
YYD1_k127_5069281_25 - - - - 0.0000000272 63.0
YYD1_k127_5069281_3 ubiquitin protein ligase binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 464.0
YYD1_k127_5069281_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 438.0
YYD1_k127_5069281_5 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 449.0
YYD1_k127_5069281_6 Dihydrodipicolinate synthetase family K01707 - 4.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 425.0
YYD1_k127_5069281_7 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009657 421.0
YYD1_k127_5069281_8 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 416.0
YYD1_k127_5069281_9 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 402.0
YYD1_k127_5085851_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 458.0
YYD1_k127_5085851_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001105 295.0
YYD1_k127_5085851_2 - - - - 0.0000004792 57.0
YYD1_k127_5085851_3 Sel1-like repeats. - - - 0.0001293 53.0
YYD1_k127_5106147_0 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004288 499.0
YYD1_k127_5106147_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00596 - 4.1.1.64 0.00000000000000000000000000000000000000005535 153.0
YYD1_k127_5106147_2 Pfam:Arch_ATPase K02450 - - 0.000000000000001224 91.0
YYD1_k127_5107130_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 1.435e-204 642.0
YYD1_k127_5107130_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 517.0
YYD1_k127_5107130_10 Putative stress-induced transcription regulator - - - 0.0000000000000000000000000000000000000000000000007115 181.0
YYD1_k127_5107130_11 Alginate lyase - - - 0.000000000000000000000000000009823 132.0
YYD1_k127_5107130_12 Putative cyclase - - - 0.00000000000000000000000002076 111.0
YYD1_k127_5107130_13 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000003401 80.0
YYD1_k127_5107130_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 481.0
YYD1_k127_5107130_3 Phytanoyl-CoA dioxygenase (PhyH) K10674 - 1.14.11.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007865 475.0
YYD1_k127_5107130_4 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 432.0
YYD1_k127_5107130_5 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007214 367.0
YYD1_k127_5107130_6 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004393 250.0
YYD1_k127_5107130_7 Asp Glu hydantoin racemase - - - 0.00000000000000000000000000000000000000000000000000001785 195.0
YYD1_k127_5107130_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000002431 190.0
YYD1_k127_5107130_9 COG0346 Lactoylglutathione lyase and related lyases K07032 - - 0.000000000000000000000000000000000000000000000000001211 188.0
YYD1_k127_5132136_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 4.716e-317 1000.0
YYD1_k127_5132136_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 543.0
YYD1_k127_5132136_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000009717 77.0
YYD1_k127_5166565_0 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0 1097.0
YYD1_k127_5166565_1 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008725 490.0
YYD1_k127_5166565_2 Belongs to the 5'-nucleotidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 295.0
YYD1_k127_5166565_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004939 285.0
YYD1_k127_5206638_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 617.0
YYD1_k127_5206638_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 603.0
YYD1_k127_5206638_10 PFAM polysaccharide biosynthesis protein - - - 0.00000000000000000000000911 116.0
YYD1_k127_5206638_11 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.0000000000000004077 91.0
YYD1_k127_5206638_2 RmlD substrate binding domain K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 537.0
YYD1_k127_5206638_3 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006089 363.0
YYD1_k127_5206638_4 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD1_k127_5206638_5 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000003221 217.0
YYD1_k127_5206638_6 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.0000000000000000000000000000000000000000000000000006841 195.0
YYD1_k127_5206638_7 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000005467 190.0
YYD1_k127_5206638_8 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000008704 180.0
YYD1_k127_5206638_9 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000004066 169.0
YYD1_k127_5230945_0 ABC-type multidrug transport system, ATPase and permease K06147,K11085 - - 6.518e-222 706.0
YYD1_k127_5230945_1 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 415.0
YYD1_k127_5230945_2 protein conserved in bacteria K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003273 265.0
YYD1_k127_5230945_3 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000002163 211.0
YYD1_k127_5238626_0 Tripartite tricarboxylate transporter TctA family K07793 - - 2.013e-230 723.0
YYD1_k127_5238626_1 MmgE/PrpD family - - - 4.63e-197 647.0
YYD1_k127_5238626_2 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 560.0
YYD1_k127_5238626_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 446.0
YYD1_k127_5238626_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01856 - 5.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 372.0
YYD1_k127_5238626_5 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005197 329.0
YYD1_k127_5238626_6 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005079 261.0
YYD1_k127_5238626_7 Tripartite tricarboxylate transporter TctB family - - - 0.000000000001367 74.0
YYD1_k127_5251689_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 546.0
YYD1_k127_5251689_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008178 409.0
YYD1_k127_5251689_10 FlgJ-related protein K03796 - - 0.00000000000000000000000000000000000000000000000000105 196.0
YYD1_k127_5251689_11 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.0000000000000000000000000000000000000001014 159.0
YYD1_k127_5251689_12 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000002451 117.0
YYD1_k127_5251689_13 Ankyrin repeat - - - 0.0000000000000000000002843 108.0
YYD1_k127_5251689_14 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000005931 61.0
YYD1_k127_5251689_2 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 344.0
YYD1_k127_5251689_3 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 344.0
YYD1_k127_5251689_4 COG0694 Thioredoxin-like proteins and domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 284.0
YYD1_k127_5251689_5 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000001326 271.0
YYD1_k127_5251689_6 Putative transmembrane protein (Alph_Pro_TM) - - - 0.0000000000000000000000000000000000000000000000000000000000000000003315 258.0
YYD1_k127_5251689_7 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000001075 215.0
YYD1_k127_5251689_8 ROS/MUCR transcriptional regulator protein - - - 0.0000000000000000000000000000000000000000000000000000001091 197.0
YYD1_k127_5251689_9 universal stress protein UspA and related nucleotide-binding - - - 0.0000000000000000000000000000000000000000000000000005633 190.0
YYD1_k127_5263155_0 Rod shape-determining protein MreB K03569 - - 9.087e-203 633.0
YYD1_k127_5263155_1 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006814 267.0
YYD1_k127_5263155_2 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 0.00000000000000000000000000000000000001509 147.0
YYD1_k127_5263155_3 shape-determining protein K03571 - - 0.0000000000000000000000000000001217 140.0
YYD1_k127_526541_0 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 460.0
YYD1_k127_526541_1 Binding-protein-dependent transport system inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 422.0
YYD1_k127_526541_2 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 357.0
YYD1_k127_526541_3 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 316.0
YYD1_k127_5287863_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1257.0
YYD1_k127_5287863_1 cell division K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 318.0
YYD1_k127_5287863_2 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000105 231.0
YYD1_k127_5287863_3 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000002663 218.0
YYD1_k127_5287863_4 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000000525 179.0
YYD1_k127_5287863_5 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000008835 171.0
YYD1_k127_5287863_6 TIGRFAM MJ0042 family finger-like protein - - - 0.00000000000000000000001485 111.0
YYD1_k127_5287863_7 Helix-turn-helix XRE-family like proteins - - - 0.0000007855 53.0
YYD1_k127_5287863_8 Tetratricopeptide TPR_2 repeat protein - - - 0.0000743 53.0
YYD1_k127_5288190_0 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004236 278.0
YYD1_k127_5288190_1 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000000000000000000000000000000000000003255 243.0
YYD1_k127_5288190_2 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000001662 232.0
YYD1_k127_5288190_3 Putative modulator of DNA gyrase K03592 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564 - 0.00000000000000000000000000000000000000000000000002686 180.0
YYD1_k127_5288190_4 Protein of unknown function (DUF1295) - - - 0.00000000000000000000000000000000000000000000000584 181.0
YYD1_k127_5310187_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 5.122e-246 779.0
YYD1_k127_5310187_1 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 437.0
YYD1_k127_5310187_2 Lytic murein transglycosylase K08305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 381.0
YYD1_k127_5310187_3 DNA polymerase III subunit delta K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 363.0
YYD1_k127_5310187_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001724 287.0
YYD1_k127_5310187_5 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001533 248.0
YYD1_k127_5310187_6 protein-S-isoprenylcysteine methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000005873 246.0
YYD1_k127_5310187_7 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000004204 244.0
YYD1_k127_5310187_8 Gram-negative-bacterium-type cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000000000002869 209.0
YYD1_k127_5310187_9 TatD related DNase K03424 - - 0.0000000000000000000000000000000000001438 144.0
YYD1_k127_531733_0 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008909 590.0
YYD1_k127_531733_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 563.0
YYD1_k127_531733_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 510.0
YYD1_k127_531733_3 VWA domain containing CoxE-like protein K07161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009841 464.0
YYD1_k127_531733_4 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 369.0
YYD1_k127_531733_5 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004564 271.0
YYD1_k127_531733_6 XdhC and CoxI family - - - 0.0000000000000000000000000000000000000000000007654 171.0
YYD1_k127_531733_7 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000001147 132.0
YYD1_k127_5364829_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 2.498e-200 642.0
YYD1_k127_5364829_1 ABC-type oligopeptide transport system, periplasmic component K02035,K13893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 383.0
YYD1_k127_5364829_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000007775 184.0
YYD1_k127_5364829_11 COG3474 Cytochrome c2 K08738 - - 0.00000000000000000000000000000000000000000000001103 177.0
YYD1_k127_5364829_12 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000000003478 151.0
YYD1_k127_5364829_13 Cytochrome c - - - 0.000000000000000000000000000000000000005008 150.0
YYD1_k127_5364829_14 Anti-sigma-K factor rskA - - - 0.00000000000000000000000000000000000002561 154.0
YYD1_k127_5364829_15 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000009176 91.0
YYD1_k127_5364829_16 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.0000478 49.0
YYD1_k127_5364829_17 PAS domain - - - 0.0002535 50.0
YYD1_k127_5364829_2 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 372.0
YYD1_k127_5364829_3 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 336.0
YYD1_k127_5364829_4 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 342.0
YYD1_k127_5364829_5 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 346.0
YYD1_k127_5364829_6 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 301.0
YYD1_k127_5364829_7 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 295.0
YYD1_k127_5364829_8 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000001233 242.0
YYD1_k127_5364829_9 Domain of unknown function (DUF4439) - - - 0.000000000000000000000000000000000000000000000000000000000000001521 224.0
YYD1_k127_5394229_0 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 394.0
YYD1_k127_5394229_2 - - - - 0.000000000000000000000000001395 113.0
YYD1_k127_5394229_3 transcription activator, effector binding K13652 - - 0.00000000000000000000000009864 118.0
YYD1_k127_5394229_4 Transcriptional regulator K13652 - - 0.000000000000000000001289 100.0
YYD1_k127_5394229_5 - - - - 0.00000000000000002529 83.0
YYD1_k127_5429242_0 Belongs to the thiolase family K00626 - 2.3.1.9 1.672e-211 662.0
YYD1_k127_5429242_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023,K00059 - 1.1.1.100,1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006232 409.0
YYD1_k127_5429242_2 alpha/beta hydrolase fold K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009206 411.0
YYD1_k127_5429242_3 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 340.0
YYD1_k127_5429242_4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000182 257.0
YYD1_k127_5437360_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1440.0
YYD1_k127_5437360_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.404e-195 618.0
YYD1_k127_5437360_10 PFAM helix-turn-helix- domain containing protein AraC type K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 305.0
YYD1_k127_5437360_11 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 300.0
YYD1_k127_5437360_12 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000676 235.0
YYD1_k127_5437360_13 Transcriptional regulator K07734 - - 0.0000000000000000000000000000000000000000000000000000000001521 210.0
YYD1_k127_5437360_14 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000003348 197.0
YYD1_k127_5437360_15 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001285 166.0
YYD1_k127_5437360_16 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000004431 160.0
YYD1_k127_5437360_17 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000006102 155.0
YYD1_k127_5437360_18 Belongs to the phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000007147 162.0
YYD1_k127_5437360_19 - - - - 0.000000000000000000000001203 111.0
YYD1_k127_5437360_2 Isocitrate/isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 523.0
YYD1_k127_5437360_20 conserved small protein - - - 0.00000695 52.0
YYD1_k127_5437360_3 COG0437 Fe-S-cluster-containing hydrogenase components 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007193 423.0
YYD1_k127_5437360_4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 385.0
YYD1_k127_5437360_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 349.0
YYD1_k127_5437360_6 DMSO reductase anchor subunit K21309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 338.0
YYD1_k127_5437360_7 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 332.0
YYD1_k127_5437360_8 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 318.0
YYD1_k127_5437360_9 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 317.0
YYD1_k127_5546513_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 8.598e-201 637.0
YYD1_k127_5546513_1 carbohydrate transport K02027,K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 559.0
YYD1_k127_5546513_10 Selenocysteine lyase K04127 - 5.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007994 407.0
YYD1_k127_5546513_11 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 369.0
YYD1_k127_5546513_12 COG0842 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 360.0
YYD1_k127_5546513_13 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 352.0
YYD1_k127_5546513_14 COG2041 Sulfite oxidase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 350.0
YYD1_k127_5546513_15 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 353.0
YYD1_k127_5546513_16 Branched-chain amino acid ATP-binding cassette transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 339.0
YYD1_k127_5546513_17 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006028 346.0
YYD1_k127_5546513_18 Periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 328.0
YYD1_k127_5546513_19 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007269 324.0
YYD1_k127_5546513_2 TIGRFAM acetylornithine and succinylornithine aminotransferase K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 522.0
YYD1_k127_5546513_20 PFAM ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 316.0
YYD1_k127_5546513_21 restriction endonuclease K07448 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008355 284.0
YYD1_k127_5546513_22 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000003119 237.0
YYD1_k127_5546513_23 Helix-turn-helix domain, rpiR family - - - 0.00000000000000000000000000000000000000000000000000000000000001138 226.0
YYD1_k127_5546513_24 - - - - 0.0000000000000000000000000000000000000000000001135 175.0
YYD1_k127_5546513_25 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000000003928 155.0
YYD1_k127_5546513_26 Domain of unknown function (DUF427) - - - 0.00000000000000000000000000000000000003196 153.0
YYD1_k127_5546513_27 Domain of unknown function (DUF4153) - - - 0.00000000000002261 74.0
YYD1_k127_5546513_28 Acyl CoA acetate 3-ketoacid CoA transferase beta subunit K01040 - 2.8.3.12 0.00000000001972 66.0
YYD1_k127_5546513_3 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 500.0
YYD1_k127_5546513_4 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 493.0
YYD1_k127_5546513_5 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 480.0
YYD1_k127_5546513_6 Mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007902 479.0
YYD1_k127_5546513_7 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 458.0
YYD1_k127_5546513_8 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 440.0
YYD1_k127_5546513_9 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 436.0
YYD1_k127_55491_0 COG2217 Cation transport ATPase K01533 - 3.6.3.4 8.153e-275 867.0
YYD1_k127_55491_1 phenylacetic acid degradation protein paaN - - - 1.181e-226 716.0
YYD1_k127_55491_10 Shikimate kinase K00851 - 2.7.1.12 0.0000000000000000000000000000000000000000000009787 172.0
YYD1_k127_55491_11 FtsZ-dependent cytokinesis - - - 0.000000000000000000000000000000000004691 146.0
YYD1_k127_55491_12 FixH - - - 0.000000000000000000000000000006914 127.0
YYD1_k127_55491_13 cytochrome oxidase maturation protein - - - 0.00000000000002807 78.0
YYD1_k127_55491_14 PFAM Cbb3-type cytochrome oxidase component K00407 - - 0.00000000001548 65.0
YYD1_k127_55491_15 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 0.000001792 50.0
YYD1_k127_55491_2 Nitrogen fixation protein fixG - - - 2.554e-202 640.0
YYD1_k127_55491_3 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 393.0
YYD1_k127_55491_4 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 391.0
YYD1_k127_55491_5 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 GO:0003674,GO:0003824,GO:0004616,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006081,GO:0006082,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019362,GO:0019520,GO:0019521,GO:0019637,GO:0019682,GO:0019693,GO:0019752,GO:0032787,GO:0034641,GO:0042802,GO:0042803,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046176,GO:0046177,GO:0046395,GO:0046483,GO:0046496,GO:0046983,GO:0051156,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072329,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 380.0
YYD1_k127_55491_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007581 350.0
YYD1_k127_55491_7 Universal stress protein UspA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005168 246.0
YYD1_k127_55491_8 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000001452 189.0
YYD1_k127_55491_9 Bacterial transferase hexapeptide (six repeats) K02617 - - 0.000000000000000000000000000000000000000000000002967 184.0
YYD1_k127_5550234_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 7.897e-252 784.0
YYD1_k127_5550234_1 COG1960 Acyl-CoA dehydrogenases K19966 - 3.13.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 553.0
YYD1_k127_5550234_10 - K07341 - - 0.0000000000000001247 83.0
YYD1_k127_5550234_12 - - - - 0.0003834 46.0
YYD1_k127_5550234_2 acyl-CoA transferases carnitine dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 537.0
YYD1_k127_5550234_3 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 533.0
YYD1_k127_5550234_4 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 501.0
YYD1_k127_5550234_5 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000003282 218.0
YYD1_k127_5550234_6 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000000000003567 205.0
YYD1_k127_5550234_7 - - - - 0.00000000000000000000000000000000000000000000000009377 185.0
YYD1_k127_5550234_8 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000004458 113.0
YYD1_k127_5550234_9 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000002919 89.0
YYD1_k127_5550583_0 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.0 1301.0
YYD1_k127_5550583_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.248e-251 786.0
YYD1_k127_5550583_10 Thioesterase superfamily K01075 - 3.1.2.23 0.00000000000000000000000000000008798 131.0
YYD1_k127_5550583_11 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000002908 100.0
YYD1_k127_5550583_12 Substrate-binding region of ABC-type glycine betaine transport system K05845 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0033554,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0071214,GO:0071470,GO:0071474,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0104004 - 0.0000000000005654 78.0
YYD1_k127_5550583_13 - - - - 0.000008046 56.0
YYD1_k127_5550583_2 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 510.0
YYD1_k127_5550583_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 381.0
YYD1_k127_5550583_4 Substrate binding domain of ABC-type glycine betaine transport system K05845 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0033554,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0071214,GO:0071470,GO:0071474,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0104004 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 332.0
YYD1_k127_5550583_5 ABC transporter permease protein yehY K05846 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000834 320.0
YYD1_k127_5550583_6 PFAM binding-protein-dependent transport systems inner membrane component K05846 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006753 285.0
YYD1_k127_5550583_7 Domain of unknown function (DUF4863) - - - 0.0000000000000000000000000000000000000000000000000000000007547 206.0
YYD1_k127_5550583_8 Low molecular weight phosphatase family K03741,K03892 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000002887 189.0
YYD1_k127_5550583_9 Thioesterase - - - 0.000000000000000000000000000000000000004796 150.0
YYD1_k127_5560583_0 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 507.0
YYD1_k127_5560583_1 ABC transporter K15600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 303.0
YYD1_k127_5560583_2 COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component K15599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 295.0
YYD1_k127_5560583_3 PFAM O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005061 284.0
YYD1_k127_5560583_4 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002201 263.0
YYD1_k127_5560583_5 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000004552 169.0
YYD1_k127_5560583_6 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000006992 153.0
YYD1_k127_5560583_7 ETC complex I subunit conserved region - - - 0.00000000000000000000000000001244 120.0
YYD1_k127_5560583_8 COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - - - 0.0000000000000000000000000001978 120.0
YYD1_k127_5560583_9 - - - - 0.0000000000000002858 83.0
YYD1_k127_55881_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 1.726e-232 732.0
YYD1_k127_55881_1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006846 269.0
YYD1_k127_5595401_0 COG0513 Superfamily II DNA and RNA helicases K17675 - 3.6.4.13 5.38e-278 893.0
YYD1_k127_5595401_1 Molecular chaperone. Has ATPase activity K04079 - - 9.18e-244 786.0
YYD1_k127_5595401_10 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.000000000000000000000000000001543 122.0
YYD1_k127_5595401_11 Protein of unknown function (DUF1223) - - - 0.00000000567 62.0
YYD1_k127_5595401_2 Protein of unknown function (DUF2652) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 573.0
YYD1_k127_5595401_3 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 536.0
YYD1_k127_5595401_4 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 505.0
YYD1_k127_5595401_5 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007557 445.0
YYD1_k127_5595401_6 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 413.0
YYD1_k127_5595401_7 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 - 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007426 385.0
YYD1_k127_5595401_8 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619 298.0
YYD1_k127_5595401_9 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004467 268.0
YYD1_k127_5599659_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 406.0
YYD1_k127_5599659_1 Glycosyl transferase family 2 K20534 - - 0.00000000002665 64.0
YYD1_k127_562101_0 DNA polymerase K02337 - 2.7.7.7 0.0 1485.0
YYD1_k127_562101_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 3.72e-270 841.0
YYD1_k127_562101_10 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004219 273.0
YYD1_k127_562101_11 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000002059 276.0
YYD1_k127_562101_12 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006572 265.0
YYD1_k127_562101_13 COG0346 Lactoylglutathione lyase and related lyases K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000208 236.0
YYD1_k127_562101_14 Hemolysin-type calcium-binding repeat (2 copies) K01406 - 3.4.24.40 0.00000000000000000000000000000000000000000000000000000000000000036 231.0
YYD1_k127_562101_15 Protein of unknown function (DUF1467) - - - 0.00000000000000000000004257 102.0
YYD1_k127_562101_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 3.157e-238 745.0
YYD1_k127_562101_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 3.302e-216 691.0
YYD1_k127_562101_4 hydrolase of the metallo-beta-lactamase superfamily K12574 - - 1.119e-205 661.0
YYD1_k127_562101_5 Permease family K06901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008713 595.0
YYD1_k127_562101_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005733 593.0
YYD1_k127_562101_7 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 558.0
YYD1_k127_562101_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 374.0
YYD1_k127_562101_9 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 304.0
YYD1_k127_5639245_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 7.08e-203 643.0
YYD1_k127_5639245_1 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005541 521.0
YYD1_k127_5639245_2 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 433.0
YYD1_k127_5639245_3 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 322.0
YYD1_k127_5639245_4 COG2518 Protein-L-isoaspartate carboxylmethyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000006993 245.0
YYD1_k127_5639245_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000911 126.0
YYD1_k127_5639245_6 Protein conserved in bacteria K09991 - - 0.0000000000000001708 87.0
YYD1_k127_5679444_0 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 419.0
YYD1_k127_5679444_1 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 362.0
YYD1_k127_5679444_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002072 267.0
YYD1_k127_5679444_3 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003619 255.0
YYD1_k127_5679444_4 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000003061 234.0
YYD1_k127_5679444_5 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000004031 231.0
YYD1_k127_5728283_0 Protein of unknown function (DUF521) K09123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 535.0
YYD1_k127_5728283_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 537.0
YYD1_k127_5728283_2 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 527.0
YYD1_k127_5728283_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009809 382.0
YYD1_k127_5728283_4 racemase activity, acting on amino acids and derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 373.0
YYD1_k127_5728283_5 Protein of unknown function DUF126 K09128 - - 0.0000000000000000000000000001711 119.0
YYD1_k127_5728283_6 Chloride channel - - - 0.0000000000000000000005088 102.0
YYD1_k127_5728283_7 membrane K07794 - - 0.000000001208 68.0
YYD1_k127_5741805_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001637 270.0
YYD1_k127_5741805_1 SapC - - - 0.00000000000000000000000000000000000000000000000000000000000000000002016 241.0
YYD1_k127_5759109_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 5.052e-230 729.0
YYD1_k127_5759109_1 alcohol dehydrogenase K00001,K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007515 520.0
YYD1_k127_5759109_2 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 432.0
YYD1_k127_5759109_3 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 354.0
YYD1_k127_5759109_4 Inhibitor of apoptosis-promoting Bax1 K06890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 304.0
YYD1_k127_5780980_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 598.0
YYD1_k127_5780980_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004197 585.0
YYD1_k127_5780980_2 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase K01826 - 5.3.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 407.0
YYD1_k127_5780980_3 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.00000000000000000000000000000000000000000000000001019 186.0
YYD1_k127_5780980_4 COG3637 Opacity protein and related surface antigens - - - 0.0000000000000000000000000000000000000000000000006889 180.0
YYD1_k127_5780980_6 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000002769 127.0
YYD1_k127_5787434_0 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 513.0
YYD1_k127_5787434_1 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006636 425.0
YYD1_k127_5787434_2 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 330.0
YYD1_k127_5787434_3 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000000000000000000000000000000000000002664 218.0
YYD1_k127_5787434_4 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000008486 203.0
YYD1_k127_5787434_5 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000006406 151.0
YYD1_k127_5787434_6 Major facilitator Superfamily K05939 - 2.3.1.40,6.2.1.20 0.0000000000000000000000000000007303 124.0
YYD1_k127_5801798_0 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 369.0
YYD1_k127_5801798_1 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 308.0
YYD1_k127_5801798_2 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000009345 244.0
YYD1_k127_5801798_3 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000000000000000000000000007863 153.0
YYD1_k127_5801798_4 CHRD domain - - - 0.0000000000000000000000000000000000005904 147.0
YYD1_k127_5801798_5 Carbonic anhydrase K01673 - 4.2.1.1 0.0000001163 55.0
YYD1_k127_5812509_0 His Kinase A (phosphoacceptor) domain - - - 9.733e-263 844.0
YYD1_k127_5812509_1 Belongs to the RtcB family K14415,K18148 - 6.5.1.3 6.434e-214 673.0
YYD1_k127_5812509_10 Dehydrogenase E1 component K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 427.0
YYD1_k127_5812509_11 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 392.0
YYD1_k127_5812509_12 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009879 396.0
YYD1_k127_5812509_13 S-Adenosylmethionine synthetase K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 376.0
YYD1_k127_5812509_14 COG0811 Biopolymer transport proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 302.0
YYD1_k127_5812509_15 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 300.0
YYD1_k127_5812509_16 Secreted protein, containing von Willebrand factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006062 295.0
YYD1_k127_5812509_17 von Willebrand factor (VWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006471 270.0
YYD1_k127_5812509_18 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004574 260.0
YYD1_k127_5812509_19 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000002121 231.0
YYD1_k127_5812509_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 3.492e-195 623.0
YYD1_k127_5812509_20 Response regulator receiver K11443 - - 0.00000000000000000000000000000000000000000000000000000000003011 208.0
YYD1_k127_5812509_21 'Cold-shock' DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000001085 193.0
YYD1_k127_5812509_22 BON domain - - - 0.00000000000000000000000000000000000000000000002845 179.0
YYD1_k127_5812509_23 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000004616 163.0
YYD1_k127_5812509_24 Protein of unknown function (DUF3775) - - - 0.0000000000000000000000000000000000000000187 157.0
YYD1_k127_5812509_25 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000007469 149.0
YYD1_k127_5812509_26 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins - - - 0.000000000000000000000000000004653 122.0
YYD1_k127_5812509_27 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000839 109.0
YYD1_k127_5812509_28 - - - - 0.00000000000000000000005125 102.0
YYD1_k127_5812509_29 Polysaccharide deacetylase - - - 0.0000000000000005639 85.0
YYD1_k127_5812509_3 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 509.0
YYD1_k127_5812509_30 AMP binding - - - 0.0000000000001138 78.0
YYD1_k127_5812509_31 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000002637 77.0
YYD1_k127_5812509_32 EF hand - - - 0.0004539 52.0
YYD1_k127_5812509_4 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006955 468.0
YYD1_k127_5812509_5 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 462.0
YYD1_k127_5812509_6 Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 466.0
YYD1_k127_5812509_7 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 477.0
YYD1_k127_5812509_8 2-oxoacid dehydrogenases acyltransferase (catalytic domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 437.0
YYD1_k127_5812509_9 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007985 430.0
YYD1_k127_5824123_0 aminopeptidase K01262 - 3.4.11.9 2.313e-251 794.0
YYD1_k127_5824123_1 DNA helicase K03657 - 3.6.4.12 1.251e-250 785.0
YYD1_k127_5824123_2 ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000000000000000000000002378 223.0
YYD1_k127_5824123_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000003094 182.0
YYD1_k127_5824123_4 CGNR zinc finger - - - 0.00000000000000000000002484 108.0
YYD1_k127_5824123_6 Domain of unknown function (DUF1127) - - - 0.0004154 50.0
YYD1_k127_5824123_7 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0007427 42.0
YYD1_k127_5843100_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K13482 - 1.17.1.4 9.782e-204 644.0
YYD1_k127_5843100_1 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006881 267.0
YYD1_k127_5848212_0 Methionine synthase K00548 - 2.1.1.13 0.0 1651.0
YYD1_k127_5848212_1 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 314.0
YYD1_k127_5848212_2 DNA helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 300.0
YYD1_k127_5848212_3 Sodium Bile acid symporter family - - - 0.00000000000000000000000000000000000000000000000000000003424 208.0
YYD1_k127_5848212_4 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000004654 169.0
YYD1_k127_5848212_5 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.000000000000000001785 91.0
YYD1_k127_5862389_0 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 7.794e-248 784.0
YYD1_k127_5862389_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 605.0
YYD1_k127_5862389_2 Cobaltochelatase CobS subunit N terminal K09882 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 564.0
YYD1_k127_5862389_3 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 490.0
YYD1_k127_5862389_4 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 398.0
YYD1_k127_5862389_5 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008091 342.0
YYD1_k127_5862389_6 Molecular chaperone - - - 0.000000000000000000000000000000000000000000000005536 179.0
YYD1_k127_5862389_7 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000003617 150.0
YYD1_k127_5868557_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 2.766e-315 974.0
YYD1_k127_5868557_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 448.0
YYD1_k127_5868557_10 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000003328 178.0
YYD1_k127_5868557_11 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000002261 164.0
YYD1_k127_5868557_12 succinate dehydrogenase K00242 - - 0.00000000000000000000000000000000004019 144.0
YYD1_k127_5868557_2 COG2030 Acyl dehydratase K14449 - 4.2.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 445.0
YYD1_k127_5868557_3 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 353.0
YYD1_k127_5868557_4 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007936 343.0
YYD1_k127_5868557_5 OpgC protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 330.0
YYD1_k127_5868557_6 Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP K00868 - 2.7.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000004492 252.0
YYD1_k127_5868557_7 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005099 244.0
YYD1_k127_5868557_8 threonine efflux protein - - - 0.0000000000000000000000000000000000000000000000000000002397 200.0
YYD1_k127_5868557_9 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000003506 185.0
YYD1_k127_587089_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 3.402e-229 725.0
YYD1_k127_587089_1 Belongs to the GST superfamily K11209 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 321.0
YYD1_k127_587089_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000007306 241.0
YYD1_k127_587089_3 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000008355 192.0
YYD1_k127_587089_4 SMART extracellular solute-binding protein, family 3 K02030 - - 0.000000000000000000000000000000000000000000009181 174.0
YYD1_k127_587089_5 membrane transporter protein K07090 - - 0.00000000004284 64.0
YYD1_k127_5875052_0 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1009.0
YYD1_k127_5875052_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 7e-239 749.0
YYD1_k127_5875052_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000001641 172.0
YYD1_k127_5875052_11 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000001471 122.0
YYD1_k127_5875052_13 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.0001109 46.0
YYD1_k127_5875052_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.141e-225 702.0
YYD1_k127_5875052_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 555.0
YYD1_k127_5875052_4 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 535.0
YYD1_k127_5875052_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006876 324.0
YYD1_k127_5875052_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 313.0
YYD1_k127_5875052_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008238 303.0
YYD1_k127_5875052_8 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008245 289.0
YYD1_k127_5875052_9 Belongs to the complex I subunit 6 family K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001194 273.0
YYD1_k127_5878275_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1073.0
YYD1_k127_5878275_1 Class II Aldolase and Adducin N-terminal domain - - - 1.713e-293 915.0
YYD1_k127_5878275_10 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 374.0
YYD1_k127_5878275_11 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 356.0
YYD1_k127_5878275_12 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 346.0
YYD1_k127_5878275_13 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 338.0
YYD1_k127_5878275_14 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 329.0
YYD1_k127_5878275_15 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 320.0
YYD1_k127_5878275_16 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 323.0
YYD1_k127_5878275_17 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004357 302.0
YYD1_k127_5878275_18 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 301.0
YYD1_k127_5878275_19 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007418 314.0
YYD1_k127_5878275_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 6.911e-272 852.0
YYD1_k127_5878275_20 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 293.0
YYD1_k127_5878275_21 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001298 280.0
YYD1_k127_5878275_22 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007343 277.0
YYD1_k127_5878275_23 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001365 273.0
YYD1_k127_5878275_24 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000474 264.0
YYD1_k127_5878275_25 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000152 259.0
YYD1_k127_5878275_26 Putative bacterial sensory transduction regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008971 240.0
YYD1_k127_5878275_27 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.00000000000000000000000000000000000000000000000000000000000000000006824 237.0
YYD1_k127_5878275_28 COG0314 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.0000000000000000000000000000000000000000000000000000000000000000001986 232.0
YYD1_k127_5878275_29 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000000000001138 232.0
YYD1_k127_5878275_3 Ethylbenzene dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 608.0
YYD1_k127_5878275_30 transcriptional - - - 0.0000000000000000000000000000000000000000000000000000000000005218 214.0
YYD1_k127_5878275_31 Aminoacyl-tRNA editing domain - - - 0.0000000000000000000000000000000000000000000000000000001383 200.0
YYD1_k127_5878275_32 - - - - 0.000000000000000000000000000000000000000000000000006512 189.0
YYD1_k127_5878275_33 Putative tRNA binding domain K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000001385 181.0
YYD1_k127_5878275_34 Sortase family K07284 - 3.4.22.70 0.000000000000000000000000000000000000000000000003066 179.0
YYD1_k127_5878275_35 transcriptional regulator - - - 0.00000000000000000000000000000000000000005496 159.0
YYD1_k127_5878275_36 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000004 147.0
YYD1_k127_5878275_37 Phasin protein - - - 0.0000000000000000000000000000000000001429 148.0
YYD1_k127_5878275_38 Stf0 sulphotransferase - - - 0.0000000000000000000000000103 123.0
YYD1_k127_5878275_39 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000000000004997 113.0
YYD1_k127_5878275_4 COG0303 Molybdopterin biosynthesis enzyme K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 536.0
YYD1_k127_5878275_40 Membrane fusogenic activity K09806 - - 0.000000000000000001067 93.0
YYD1_k127_5878275_41 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000005009 87.0
YYD1_k127_5878275_5 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 524.0
YYD1_k127_5878275_6 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 511.0
YYD1_k127_5878275_7 Histidine kinase K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 488.0
YYD1_k127_5878275_8 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008281 454.0
YYD1_k127_5878275_9 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 448.0
YYD1_k127_5883176_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1165.0
YYD1_k127_5883176_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 8.738e-302 940.0
YYD1_k127_5883176_10 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 344.0
YYD1_k127_5883176_11 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 334.0
YYD1_k127_5883176_12 Belongs to the HpcH HpaI aldolase family K01630,K02510 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0008150,GO:0008152,GO:0016829,GO:0016830,GO:0016832,GO:0044238,GO:0044424,GO:0044464,GO:0071704 4.1.2.20,4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 324.0
YYD1_k127_5883176_13 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008907 323.0
YYD1_k127_5883176_14 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 316.0
YYD1_k127_5883176_15 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01029,K01032 GO:0001666,GO:0006950,GO:0008150,GO:0009628,GO:0036293,GO:0050896,GO:0070482 2.8.3.5,2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 314.0
YYD1_k127_5883176_16 Coenzyme A transferase K01031 - 2.8.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599 304.0
YYD1_k127_5883176_17 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 306.0
YYD1_k127_5883176_18 Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002632 283.0
YYD1_k127_5883176_19 dithiol-disulfide isomerase involved in polyketide biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000009411 240.0
YYD1_k127_5883176_2 AMP-binding enzyme C-terminal domain K02182 - 6.2.1.48 2.292e-235 745.0
YYD1_k127_5883176_20 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001548 229.0
YYD1_k127_5883176_21 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000004025 215.0
YYD1_k127_5883176_22 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.0000000000000000000000000000000000000000000000000000000007659 203.0
YYD1_k127_5883176_23 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000000000000000000000001323 207.0
YYD1_k127_5883176_24 Protein of unknown function (DUF1428) - - - 0.0000000000000000000000000000000000000000000000000000005314 197.0
YYD1_k127_5883176_25 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.000000000000000000000000000000000000000000000000000001505 198.0
YYD1_k127_5883176_26 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000000000000000009484 186.0
YYD1_k127_5883176_27 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000002297 194.0
YYD1_k127_5883176_29 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000001069 117.0
YYD1_k127_5883176_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 5.603e-194 614.0
YYD1_k127_5883176_30 - - - - 0.000000000000000000006961 97.0
YYD1_k127_5883176_31 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000002015 94.0
YYD1_k127_5883176_32 - - - - 0.0006493 49.0
YYD1_k127_5883176_4 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 477.0
YYD1_k127_5883176_5 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 431.0
YYD1_k127_5883176_6 Chalcone and stilbene synthases, C-terminal domain K16167 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009301 416.0
YYD1_k127_5883176_7 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 416.0
YYD1_k127_5883176_8 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 387.0
YYD1_k127_5883176_9 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 346.0
YYD1_k127_5885453_0 argininosuccinate lyase K01755 - 4.3.2.1 6.112e-198 627.0
YYD1_k127_5885453_1 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003824 282.0
YYD1_k127_5885453_2 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000002145 177.0
YYD1_k127_5885453_3 - - - - 0.00000000000000000000000000000000000000000000911 168.0
YYD1_k127_5885453_4 SCO1/SenC K07152 - - 0.0000000000000000000000000000000000000127 155.0
YYD1_k127_5885453_5 - - - - 0.00000000000000000000000000000000000006516 149.0
YYD1_k127_5885453_6 Glycosyl transferase, family 2 K00786 - - 0.000000000000000000000000000000000003851 143.0
YYD1_k127_5885453_7 cytochrome K08738 - - 0.0000000000000000000000003039 109.0
YYD1_k127_5885453_8 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.0000000000000000004145 97.0
YYD1_k127_5900806_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 491.0
YYD1_k127_5900806_1 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000004688 184.0
YYD1_k127_5900806_2 Protein of unknown function (DUF2390) - - - 0.000000000000000000002428 100.0
YYD1_k127_5900806_3 Protein of unknown function (DUF465) - - - 0.00000001519 59.0
YYD1_k127_590993_0 DEAD/H associated K03724 - - 0.0 1096.0
YYD1_k127_590993_1 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 572.0
YYD1_k127_590993_2 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 465.0
YYD1_k127_590993_3 Lysophospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 297.0
YYD1_k127_590993_4 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003561 280.0
YYD1_k127_590993_5 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001001 274.0
YYD1_k127_590993_6 Calcineurin-like phosphoesterase K06953 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001619 259.0
YYD1_k127_590993_7 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000002633 194.0
YYD1_k127_590993_8 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000008206 113.0
YYD1_k127_594022_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1283.0
YYD1_k127_594022_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 5.485e-238 740.0
YYD1_k127_594022_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 557.0
YYD1_k127_594022_3 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007119 559.0
YYD1_k127_594022_4 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008049 426.0
YYD1_k127_594022_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 348.0
YYD1_k127_5940365_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 371.0
YYD1_k127_5940365_1 Ion channel K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 317.0
YYD1_k127_5940365_2 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000002123 228.0
YYD1_k127_5945687_0 COG2041 Sulfite oxidase and related enzymes K00387 - 1.8.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 593.0
YYD1_k127_5945687_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005366 364.0
YYD1_k127_5945687_10 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000000002545 212.0
YYD1_k127_5945687_11 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.000000000000000000000000000000000000000000000005837 182.0
YYD1_k127_5945687_12 6-pyruvoyl tetrahydropterin synthase - - - 0.000000000000000000000000000000000000000000000009317 174.0
YYD1_k127_5945687_13 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.00000000000000000000000000000000000000000003269 172.0
YYD1_k127_5945687_14 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000009434 158.0
YYD1_k127_5945687_15 cytochrome - - - 0.0000000000000000000000000009582 115.0
YYD1_k127_5945687_16 - - - - 0.00000001102 66.0
YYD1_k127_5945687_2 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 355.0
YYD1_k127_5945687_3 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 321.0
YYD1_k127_5945687_4 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 331.0
YYD1_k127_5945687_5 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007751 283.0
YYD1_k127_5945687_6 sulfuric ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002017 273.0
YYD1_k127_5945687_7 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000157 246.0
YYD1_k127_5945687_8 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000005297 237.0
YYD1_k127_5945687_9 COG2030 Acyl dehydratase K17865 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0022607,GO:0042620,GO:0042621,GO:0043933,GO:0044085,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901576 4.2.1.55 0.0000000000000000000000000000000000000000000000000000000002465 207.0
YYD1_k127_5953601_0 ATPase (AAA K06923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009506 430.0
YYD1_k127_5953601_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 357.0
YYD1_k127_5953601_2 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003138 302.0
YYD1_k127_5953601_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 295.0
YYD1_k127_5977536_0 GTP cyclohydrolase N terminal - - - 1.033e-213 671.0
YYD1_k127_5977536_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 501.0
YYD1_k127_5977536_2 Protein of unknown function (DUF1688) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 502.0
YYD1_k127_5977536_3 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 409.0
YYD1_k127_5977536_4 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 305.0
YYD1_k127_5977536_5 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004599 254.0
YYD1_k127_5977536_6 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.0000000000000000000000000000000000000000000000000000000000000000001825 233.0
YYD1_k127_5977536_7 Kelch repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000003969 228.0
YYD1_k127_5977536_8 NlpE C-terminal OB domain - - - 0.0000000000000000000000000000000000000000000000000000000000001797 229.0
YYD1_k127_5977536_9 transcriptional regulator K04761 - - 0.00000000000000000000000000000000000000000000000004407 183.0
YYD1_k127_5987491_0 FAD dependent oxidoreductase - - - 0.0 1105.0
YYD1_k127_5987491_1 Belongs to the ABC transporter superfamily K13896 - - 6.663e-235 739.0
YYD1_k127_5987491_10 Adenosine/AMP deaminase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 417.0
YYD1_k127_5987491_11 SMP-30/Gluconolaconase/LRE-like region K02352 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 408.0
YYD1_k127_5987491_12 COG4166 ABC-type oligopeptide transport system, periplasmic component K13893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 402.0
YYD1_k127_5987491_13 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 388.0
YYD1_k127_5987491_14 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 377.0
YYD1_k127_5987491_15 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 376.0
YYD1_k127_5987491_16 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007767 357.0
YYD1_k127_5987491_17 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 309.0
YYD1_k127_5987491_18 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 308.0
YYD1_k127_5987491_19 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 289.0
YYD1_k127_5987491_2 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007307 606.0
YYD1_k127_5987491_20 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000001936 272.0
YYD1_k127_5987491_21 PFAM regulatory protein DeoR K02444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001204 252.0
YYD1_k127_5987491_22 radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000001432 253.0
YYD1_k127_5987491_23 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000001795 242.0
YYD1_k127_5987491_24 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000001508 239.0
YYD1_k127_5987491_25 Transcriptional regulator, TetR family - - - 0.00000000000000000000000000000000000000000003178 167.0
YYD1_k127_5987491_26 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000000000000000000000000000000000000001187 153.0
YYD1_k127_5987491_27 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000001204 151.0
YYD1_k127_5987491_28 PFAM glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000252 142.0
YYD1_k127_5987491_29 DNA-binding transcription factor activity - - - 0.000000000000000000000006211 108.0
YYD1_k127_5987491_3 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 602.0
YYD1_k127_5987491_30 DsrE/DsrF-like family K06039 - - 0.00000000000000000111 87.0
YYD1_k127_5987491_31 DsrE/DsrF-like family K06039 - - 0.00003161 49.0
YYD1_k127_5987491_4 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 585.0
YYD1_k127_5987491_5 transport system, permease component K13894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 573.0
YYD1_k127_5987491_6 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 573.0
YYD1_k127_5987491_7 transport system, permease component K13895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009373 561.0
YYD1_k127_5987491_8 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 518.0
YYD1_k127_5987491_9 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 469.0
YYD1_k127_6026913_0 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006531 342.0
YYD1_k127_6026913_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000007765 175.0
YYD1_k127_6051604_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1126.0
YYD1_k127_6051604_1 Amidohydrolase K07045 - - 2.103e-247 773.0
YYD1_k127_6051604_10 Peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 486.0
YYD1_k127_6051604_11 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008518 482.0
YYD1_k127_6051604_12 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 430.0
YYD1_k127_6051604_13 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 415.0
YYD1_k127_6051604_14 Belongs to the DapA family K21062 - 3.5.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004094 415.0
YYD1_k127_6051604_15 ABC-type spermidine putrescine transport system, permease component II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 394.0
YYD1_k127_6051604_16 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 385.0
YYD1_k127_6051604_17 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 366.0
YYD1_k127_6051604_18 isochorismatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 301.0
YYD1_k127_6051604_19 Fumarylacetoacetate (FAA) hydrolase family K01617 - 4.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000001697 254.0
YYD1_k127_6051604_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.545e-217 681.0
YYD1_k127_6051604_20 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001159 244.0
YYD1_k127_6051604_21 COG4665 TRAP-type mannitol chloroaromatic compound transport system small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000002571 234.0
YYD1_k127_6051604_22 TIGRFAM TRAP transporter, DctM subunit - - - 0.0000000000000000000000000000000000000000000002245 172.0
YYD1_k127_6051604_23 COG2346, Truncated hemoglobins K03406,K06886 GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008941,GO:0009056,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016491,GO:0016705,GO:0016708,GO:0017144,GO:0019825,GO:0020012,GO:0020037,GO:0030682,GO:0034641,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043207,GO:0044237,GO:0044248,GO:0044270,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046210,GO:0046906,GO:0048037,GO:0050896,GO:0051213,GO:0051410,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:0075136,GO:0097159,GO:0098754,GO:1901363,GO:1901698,GO:2001057 - 0.00000000000000002124 83.0
YYD1_k127_6051604_24 - - - - 0.000000001107 65.0
YYD1_k127_6051604_25 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K01769 - 4.6.1.1,4.6.1.2 0.00000000212 67.0
YYD1_k127_6051604_3 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 3.006e-195 628.0
YYD1_k127_6051604_4 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 597.0
YYD1_k127_6051604_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009638 572.0
YYD1_k127_6051604_6 Proline racemase K12658 - 5.1.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005948 561.0
YYD1_k127_6051604_7 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 561.0
YYD1_k127_6051604_8 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 559.0
YYD1_k127_6051604_9 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 520.0
YYD1_k127_6075306_0 ABC-type dipeptide transport system periplasmic component K02035 - - 1.454e-305 942.0
YYD1_k127_6075306_1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 1.632e-297 939.0
YYD1_k127_6075306_10 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 372.0
YYD1_k127_6075306_11 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000103 247.0
YYD1_k127_6075306_12 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001313 248.0
YYD1_k127_6075306_13 DNA RNA non-specific endonuclease K01173 - - 0.000000000000000000000000000000000000000000000000000000000002117 220.0
YYD1_k127_6075306_14 AraC-binding-like domain - - - 0.0000000000000000000000000000000000000000000000278 183.0
YYD1_k127_6075306_15 oxidation-reduction process - - - 0.0000000000000000000000000000000000000000249 157.0
YYD1_k127_6075306_16 - - - - 0.00000000000000000000000000000000000003791 148.0
YYD1_k127_6075306_17 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000004468 151.0
YYD1_k127_6075306_18 - - - - 0.000000000000000000000000000000000252 139.0
YYD1_k127_6075306_19 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000158 113.0
YYD1_k127_6075306_2 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 9.809e-279 863.0
YYD1_k127_6075306_20 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.00000000001446 66.0
YYD1_k127_6075306_3 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 8.729e-212 671.0
YYD1_k127_6075306_4 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 447.0
YYD1_k127_6075306_5 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 436.0
YYD1_k127_6075306_6 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 432.0
YYD1_k127_6075306_7 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 426.0
YYD1_k127_6075306_8 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 416.0
YYD1_k127_6075306_9 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 394.0
YYD1_k127_6075495_0 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 2.396e-264 854.0
YYD1_k127_6075495_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 413.0
YYD1_k127_6075495_10 UPF0391 membrane protein - - - 0.00000000000001905 74.0
YYD1_k127_6075495_11 - - - - 0.000000000003026 70.0
YYD1_k127_6075495_12 Acetyltransferase (GNAT) family - - - 0.000000006421 67.0
YYD1_k127_6075495_13 AMP-binding enzyme - - - 0.00000001487 59.0
YYD1_k127_6075495_14 beta-lactamase activity K07126 GO:0006950,GO:0006979,GO:0008150,GO:0050896 - 0.00000005973 63.0
YYD1_k127_6075495_15 - - - - 0.00003134 48.0
YYD1_k127_6075495_2 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 352.0
YYD1_k127_6075495_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004743 250.0
YYD1_k127_6075495_4 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000004432 197.0
YYD1_k127_6075495_5 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000002653 184.0
YYD1_k127_6075495_6 Histidine kinase - - - 0.0000000000000000000000000000000000003202 163.0
YYD1_k127_6075495_7 Phosphopantetheine attachment site K02078 - - 0.000000000000000000000000006322 113.0
YYD1_k127_6075495_8 DUF218 domain - - - 0.0000000000000000000001226 110.0
YYD1_k127_6075495_9 Lysin motif - - - 0.0000000000000000000004638 110.0
YYD1_k127_6077473_0 Adenylate and Guanylate cyclase catalytic domain - - - 0.0 1028.0
YYD1_k127_6077473_1 Precorrin-3B K05934,K13541 - 2.1.1.131,3.7.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 605.0
YYD1_k127_6077473_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 308.0
YYD1_k127_6077473_11 Precorrin-2 K03394 - 2.1.1.130,2.1.1.151 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002065 280.0
YYD1_k127_6077473_12 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002671 268.0
YYD1_k127_6077473_13 3-hydroxyanthranilic acid dioxygenase K00452 GO:0000334,GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0044237,GO:0044248,GO:0051213,GO:0055114 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000003337 244.0
YYD1_k127_6077473_14 Tetrapyrrole (Corrin/Porphyrin) Methylases K00595 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.1.1.132 0.0000000000000000000000000000000000000000000001458 170.0
YYD1_k127_6077473_15 Flavin reductase like domain K09024 - - 0.0000000000000000000000000000000000000000009382 163.0
YYD1_k127_6077473_2 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005771 528.0
YYD1_k127_6077473_3 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 519.0
YYD1_k127_6077473_4 Amidohydrolase K03392,K22213 - 4.1.1.45,4.1.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 429.0
YYD1_k127_6077473_5 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007503 409.0
YYD1_k127_6077473_6 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 415.0
YYD1_k127_6077473_7 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 360.0
YYD1_k127_6077473_8 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 334.0
YYD1_k127_6077473_9 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 300.0
YYD1_k127_6077995_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 9.761e-247 773.0
YYD1_k127_6077995_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007507 432.0
YYD1_k127_6077995_2 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 405.0
YYD1_k127_6077995_3 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
YYD1_k127_6077995_4 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000001253 260.0
YYD1_k127_6077995_5 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000004742 254.0
YYD1_k127_6077995_6 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002452 249.0
YYD1_k127_6077995_7 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000001829 225.0
YYD1_k127_6077995_8 Protein conserved in bacteria K09931 - - 0.0000000000000000000000000000000000000000000000000000003495 199.0
YYD1_k127_6077995_9 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000003755 104.0
YYD1_k127_6088693_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.441e-198 627.0
YYD1_k127_6088693_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 582.0
YYD1_k127_6088693_2 Acetamidase/Formamidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 560.0
YYD1_k127_6088693_3 Pirin K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 496.0
YYD1_k127_6088693_4 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004132 492.0
YYD1_k127_6088693_5 Histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006093 465.0
YYD1_k127_6088693_6 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 389.0
YYD1_k127_6088693_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 306.0
YYD1_k127_6088693_8 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000005714 180.0
YYD1_k127_6111603_0 Participates in both transcription termination and antitermination K02600 - - 1.076e-242 758.0
YYD1_k127_6111603_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.077e-218 694.0
YYD1_k127_6111603_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 5.825e-200 629.0
YYD1_k127_6111603_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 499.0
YYD1_k127_6111603_4 COG1253 Hemolysins and related proteins containing CBS domains K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 321.0
YYD1_k127_6111603_5 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000002027 241.0
YYD1_k127_6111603_6 transcriptional - - - 0.0000000000000000000000000000000000000000000000001212 183.0
YYD1_k127_6111603_7 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000005552 172.0
YYD1_k127_6111603_8 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000003547 156.0
YYD1_k127_6111603_9 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.000000000000000000000000000000000000009719 157.0
YYD1_k127_6113008_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 1.099e-243 759.0
YYD1_k127_6113008_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 609.0
YYD1_k127_6113008_10 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000003382 162.0
YYD1_k127_6113008_11 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000002538 106.0
YYD1_k127_6113008_12 pfam rdd - - - 0.00000000000002116 82.0
YYD1_k127_6113008_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 596.0
YYD1_k127_6113008_3 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 529.0
YYD1_k127_6113008_4 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 355.0
YYD1_k127_6113008_5 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003455 321.0
YYD1_k127_6113008_6 Alternative oxidase K17893 - 1.10.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 302.0
YYD1_k127_6113008_7 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000001717 199.0
YYD1_k127_6113008_8 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000005036 192.0
YYD1_k127_6113008_9 Phospholipid N-methyltransferase K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000001323 192.0
YYD1_k127_612184_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.0 1022.0
YYD1_k127_612184_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1020.0
YYD1_k127_612184_10 COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 495.0
YYD1_k127_612184_11 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005944 468.0
YYD1_k127_612184_12 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 456.0
YYD1_k127_612184_13 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 479.0
YYD1_k127_612184_14 2-Hydroxy-3-oxopropionate reductase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 440.0
YYD1_k127_612184_15 Oligopeptide/dipeptide transporter, C-terminal region K02032,K12372 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 438.0
YYD1_k127_612184_16 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 407.0
YYD1_k127_612184_17 Protocatechuate 3,4-dioxygenase beta subunit N terminal K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 400.0
YYD1_k127_612184_18 homoserine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 398.0
YYD1_k127_612184_19 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009867 368.0
YYD1_k127_612184_2 Tripartite tricarboxylate transporter TctA family K07793 - - 2.028e-260 809.0
YYD1_k127_612184_20 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 372.0
YYD1_k127_612184_21 Domain of unknown function DUF108 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 346.0
YYD1_k127_612184_22 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007298 346.0
YYD1_k127_612184_23 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 324.0
YYD1_k127_612184_24 Selenocysteine synthase (Seryl-tRNASer selenium transferase) K01042 - 2.9.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 329.0
YYD1_k127_612184_25 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003404 297.0
YYD1_k127_612184_26 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 300.0
YYD1_k127_612184_27 Dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 291.0
YYD1_k127_612184_28 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001661 287.0
YYD1_k127_612184_29 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000368 257.0
YYD1_k127_612184_3 belongs to the aldehyde dehydrogenase family K22187 - - 8.686e-234 731.0
YYD1_k127_612184_30 - - - - 0.000000000000000000000000000000000000000000000000000000000000002498 228.0
YYD1_k127_612184_31 Ankyrin repeats (3 copies) - - - 0.000000000000000000000000000000000000000000000000000000000001443 218.0
YYD1_k127_612184_32 Hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000001443 218.0
YYD1_k127_612184_33 SMART protein phosphatase 2C domain protein K01090 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000001846 215.0
YYD1_k127_612184_34 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000000002715 207.0
YYD1_k127_612184_35 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000000000000000000000000000000000000000008789 201.0
YYD1_k127_612184_36 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000005403 198.0
YYD1_k127_612184_37 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000007253 144.0
YYD1_k127_612184_38 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000009618 139.0
YYD1_k127_612184_39 transport system small permease component - - - 0.00000000000000000000000000007062 124.0
YYD1_k127_612184_4 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 591.0
YYD1_k127_612184_40 Ndr family - - - 0.0000000000005102 84.0
YYD1_k127_612184_5 amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 574.0
YYD1_k127_612184_6 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005367 530.0
YYD1_k127_612184_7 Adenylosuccinate lyase C-terminus K01857 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007388 524.0
YYD1_k127_612184_8 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 529.0
YYD1_k127_612184_9 COG0515 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 517.0
YYD1_k127_6155285_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 1.565e-228 713.0
YYD1_k127_6155285_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006439 550.0
YYD1_k127_6155285_10 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.0000000000000000000000000000000000000000000000000000000003558 209.0
YYD1_k127_6155285_11 NnrU protein - - - 0.00000000000000000000000000000000000000000000000000000006409 203.0
YYD1_k127_6155285_12 YHS domain protein - - - 0.00000000000000000000000000000000000000000004412 168.0
YYD1_k127_6155285_13 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000000000000000008771 152.0
YYD1_k127_6155285_14 invasion associated locus B - - - 0.0000000000000000000000000000000000000002868 155.0
YYD1_k127_6155285_15 transcriptional regulator - - - 0.00000000000000000000000000000007396 132.0
YYD1_k127_6155285_16 PFAM Acetyltransferase (GNAT) family K03824 - - 0.0000000006675 66.0
YYD1_k127_6155285_17 PFAM Protein kinase domain - - - 0.000000009088 59.0
YYD1_k127_6155285_2 sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 477.0
YYD1_k127_6155285_3 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007641 410.0
YYD1_k127_6155285_4 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008047 398.0
YYD1_k127_6155285_5 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 330.0
YYD1_k127_6155285_6 COG3806 Anti-sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 330.0
YYD1_k127_6155285_7 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005019 305.0
YYD1_k127_6155285_8 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000002641 228.0
YYD1_k127_6155285_9 ChrR Cupin-like domain K07167 - - 0.00000000000000000000000000000000000000000000000000000000001178 213.0
YYD1_k127_6166216_0 Adenylate cyclase K01768 - 4.6.1.1 4.671e-262 818.0
YYD1_k127_6166216_1 Protein conserved in bacteria K07793 - - 7.858e-239 747.0
YYD1_k127_6166216_10 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000003511 122.0
YYD1_k127_6166216_11 Membrane protein TerC, possibly involved in tellurium resistance - - - 0.0000000000000000000002443 98.0
YYD1_k127_6166216_12 oxidation-reduction process - - - 0.000000000000000006384 89.0
YYD1_k127_6166216_2 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 479.0
YYD1_k127_6166216_3 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 464.0
YYD1_k127_6166216_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 358.0
YYD1_k127_6166216_5 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
YYD1_k127_6166216_6 transcriptional regulator K07736 - - 0.000000000000000000000000000000000000000000000000000000000000000004418 230.0
YYD1_k127_6166216_7 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000000000008402 206.0
YYD1_k127_6166216_8 Staphylococcal nuclease homologue - - - 0.0000000000000000000000000000000000000000000000000005904 201.0
YYD1_k127_6166216_9 Lipid A 3-O-deacylase (PagL) - - - 0.00000000000000000000000000000000006748 140.0
YYD1_k127_6170247_0 III protein, CoA-transferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 602.0
YYD1_k127_6170247_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 420.0
YYD1_k127_6170247_2 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000005189 229.0
YYD1_k127_6170247_3 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000001272 81.0
YYD1_k127_6182902_0 GMC oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 346.0
YYD1_k127_6182902_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002182 263.0
YYD1_k127_6182902_2 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000001073 192.0
YYD1_k127_6182902_3 Glycosyl transferase family group 2 K07011 - - 0.00000000000000000000000000000000000103 153.0
YYD1_k127_6182902_4 Ribonuclease B OB domain K03704 - - 0.0000000000000000000000000001415 119.0
YYD1_k127_6182902_5 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000958 120.0
YYD1_k127_6182902_7 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.000000000002457 78.0
YYD1_k127_6182902_8 - - - - 0.000001351 52.0
YYD1_k127_6182902_9 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00007329 54.0
YYD1_k127_620862_0 Phosphate transport system permease K02038 - - 6.813e-236 751.0
YYD1_k127_620862_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 426.0
YYD1_k127_620862_2 transport system permease component K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006779 385.0
YYD1_k127_620862_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008099 353.0
YYD1_k127_620862_4 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 322.0
YYD1_k127_6212977_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008089 494.0
YYD1_k127_6212977_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 445.0
YYD1_k127_6212977_10 PFAM isocitrate isopropylmalate dehydrogenase K05824 - 1.1.1.87 0.00000000000000000000000000000000000000002851 155.0
YYD1_k127_6212977_11 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000009925 157.0
YYD1_k127_6212977_12 COG4618 ABC-type protease lipase transport system, ATPase and permease components K16299 - - 0.0000000004458 63.0
YYD1_k127_6212977_13 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.00000005744 64.0
YYD1_k127_6212977_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 428.0
YYD1_k127_6212977_3 Glycosyl transferases group 1 K00786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 409.0
YYD1_k127_6212977_4 Domain of unknown function (DUF3473) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 363.0
YYD1_k127_6212977_5 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 353.0
YYD1_k127_6212977_6 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009555 338.0
YYD1_k127_6212977_7 CobQ/CobB/MinD/ParA nucleotide binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003168 279.0
YYD1_k127_6212977_8 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001465 250.0
YYD1_k127_6212977_9 Protein involved in cellulose biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000285 208.0
YYD1_k127_6215704_0 protein related to plant photosystem II stability assembly factor - - - 5.983e-218 681.0
YYD1_k127_6215704_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000005407 235.0
YYD1_k127_6215704_2 ThiS family K03636 - - 0.000000000000000000000000000000008063 132.0
YYD1_k127_6215704_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000003612 88.0
YYD1_k127_6215704_4 - - - - 0.000003214 49.0
YYD1_k127_6224919_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1382.0
YYD1_k127_6224919_1 4Fe-4S binding domain - - - 4.392e-285 894.0
YYD1_k127_6224919_10 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 383.0
YYD1_k127_6224919_11 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 372.0
YYD1_k127_6224919_12 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000782 361.0
YYD1_k127_6224919_13 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 347.0
YYD1_k127_6224919_14 WD domain, G-beta repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 342.0
YYD1_k127_6224919_15 ABC-type tungstate transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 303.0
YYD1_k127_6224919_16 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 304.0
YYD1_k127_6224919_17 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001228 291.0
YYD1_k127_6224919_18 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001645 284.0
YYD1_k127_6224919_19 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000169 257.0
YYD1_k127_6224919_2 signal transduction histidine kinase K13587 - 2.7.13.3 7.382e-249 793.0
YYD1_k127_6224919_20 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000001379 230.0
YYD1_k127_6224919_21 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000005134 207.0
YYD1_k127_6224919_22 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08234 - - 0.000000000000000000000000000000000000000000000000278 179.0
YYD1_k127_6224919_23 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.000000000000000000000000000000000000000000163 170.0
YYD1_k127_6224919_24 ankyrin repeat K15503 - - 0.00000000000000000000000000000000000001111 158.0
YYD1_k127_6224919_25 NfeD-like C-terminal, partner-binding K07340 - - 0.00000000000000000000000000000000000003621 147.0
YYD1_k127_6224919_26 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000402 151.0
YYD1_k127_6224919_27 Protein of unknown function (DUF3305) - - - 0.00000000000000000000000000000002419 133.0
YYD1_k127_6224919_28 Protein of unknown function (DUF1153) - - - 0.00000000000000000000000000007311 119.0
YYD1_k127_6224919_29 electron transfer activity K02977,K06927,K08738,K08770 GO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244 6.3.1.14 0.000000000000000000000000001974 119.0
YYD1_k127_6224919_3 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 545.0
YYD1_k127_6224919_30 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000002374 114.0
YYD1_k127_6224919_31 signal transduction histidine kinase K13588 - - 0.00000000000000000000000105 112.0
YYD1_k127_6224919_32 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000444 98.0
YYD1_k127_6224919_33 Protein of unknown function (DUF3553) - - - 0.0000000000000002294 84.0
YYD1_k127_6224919_34 Protein of unknown function (DUF3306) - - - 0.0000000000000006677 87.0
YYD1_k127_6224919_35 Polymer-forming cytoskeletal - - - 0.0000000000000381 76.0
YYD1_k127_6224919_36 Membrane transport protein MerF K19058 - - 0.000000000433 63.0
YYD1_k127_6224919_37 Thioredoxin - - - 0.00006094 49.0
YYD1_k127_6224919_4 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 443.0
YYD1_k127_6224919_5 Bacterial extracellular solute-binding protein K05772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 419.0
YYD1_k127_6224919_6 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009245 419.0
YYD1_k127_6224919_7 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 407.0
YYD1_k127_6224919_8 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007812 411.0
YYD1_k127_6224919_9 COG0437 Fe-S-cluster-containing hydrogenase components 1 K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 390.0
YYD1_k127_6234648_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.701e-279 866.0
YYD1_k127_6234648_1 Belongs to the KdsA family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 457.0
YYD1_k127_6234648_2 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 400.0
YYD1_k127_6234648_3 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003262 312.0
YYD1_k127_6234648_4 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005716 277.0
YYD1_k127_6234648_5 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000000000009893 107.0
YYD1_k127_6234648_6 mercury ion transmembrane transporter activity K07213 - - 0.0000000000004809 71.0
YYD1_k127_6234648_7 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000291 52.0
YYD1_k127_6239631_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 9.718e-197 618.0
YYD1_k127_6239631_1 oxidoreductase activity, acting on CH-OH group of donors - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006408 280.0
YYD1_k127_6239631_2 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000007869 186.0
YYD1_k127_6239631_3 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.0000000000000000000000000000000000000000001785 160.0
YYD1_k127_6239631_4 SnoaL-like domain - - - 0.0000000000000000000000000000000000006005 143.0
YYD1_k127_6239631_5 small membrane protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000001607 115.0
YYD1_k127_6239631_6 Transcriptional regulator K03482,K03710 - - 0.00000000000003396 79.0
YYD1_k127_6241121_0 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 439.0
YYD1_k127_6241121_1 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 393.0
YYD1_k127_6241121_2 ABC transporter K02049,K15555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 383.0
YYD1_k127_6241121_3 fumarylacetoacetate (FAA) hydrolase K16165 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0008948,GO:0016787,GO:0016822,GO:0016823,GO:0016829,GO:0016830,GO:0016831,GO:0018773,GO:0031974,GO:0031981,GO:0034545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013 3.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 359.0
YYD1_k127_6241121_4 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 334.0
YYD1_k127_6241121_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004437 279.0
YYD1_k127_6241121_6 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001377 276.0
YYD1_k127_6241121_7 Major Facilitator Superfamily - - - 0.0000000002574 64.0
YYD1_k127_6259208_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0 1776.0
YYD1_k127_6259208_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 321.0
YYD1_k127_6259208_2 Protein of unknown function (DUF2848) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001371 283.0
YYD1_k127_6259208_3 phosphoribosylanthranilate isomerase activity K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000305 250.0
YYD1_k127_6259208_4 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000001411 233.0
YYD1_k127_6259208_5 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000003799 222.0
YYD1_k127_6259208_6 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.00000000000000000000000000000000000000000000000000000000002884 222.0
YYD1_k127_6259208_7 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000001696 171.0
YYD1_k127_6259208_8 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000007284 154.0
YYD1_k127_6295139_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 5.066e-314 972.0
YYD1_k127_6295139_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 563.0
YYD1_k127_6295139_2 Belongs to the thiolase family K00626,K00632,K07823 - 2.3.1.16,2.3.1.174,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 494.0
YYD1_k127_6295139_3 Mate efflux family protein K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008544 464.0
YYD1_k127_6295139_4 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 373.0
YYD1_k127_6295139_5 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 335.0
YYD1_k127_6295139_6 phenylacetic acid degradation protein K02614 GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790 - 0.000000000000000000000000000000000000002172 157.0
YYD1_k127_6295139_7 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000000006215 103.0
YYD1_k127_6295139_8 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000004189 86.0
YYD1_k127_6296581_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 5.271e-296 918.0
YYD1_k127_6296581_1 N-6 DNA Methylase - - - 8.653e-271 854.0
YYD1_k127_6296581_10 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000000002416 198.0
YYD1_k127_6296581_11 relative of glutathione S-transferase, MAPEG superfamily K07136 - - 0.0000000000000000000002443 102.0
YYD1_k127_6296581_12 Protein of unknown function (DUF3800) - - - 0.000009793 48.0
YYD1_k127_6296581_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007053 490.0
YYD1_k127_6296581_3 Chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 371.0
YYD1_k127_6296581_4 Protein of unknown function (DUF3800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 326.0
YYD1_k127_6296581_5 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 308.0
YYD1_k127_6296581_6 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 298.0
YYD1_k127_6296581_7 Protein of unknown function (DUF3800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000012 291.0
YYD1_k127_6296581_8 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005567 282.0
YYD1_k127_6296581_9 restriction endonuclease K07448 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001256 264.0
YYD1_k127_6303307_0 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 510.0
YYD1_k127_6303307_1 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 449.0
YYD1_k127_6303307_2 AMP-binding enzyme C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007111 416.0
YYD1_k127_6303307_3 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 360.0
YYD1_k127_6303307_4 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 327.0
YYD1_k127_6303307_5 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000009489 265.0
YYD1_k127_6303307_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007931 248.0
YYD1_k127_6303307_7 Antibiotic biosynthesis monooxygenase - - - 0.00000000006939 69.0
YYD1_k127_6324476_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00244 - 1.3.5.4 3.955e-271 846.0
YYD1_k127_6324476_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 7.881e-235 742.0
YYD1_k127_6324476_10 Fumarase C-terminus K01678,K03780 - 4.2.1.2,4.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 313.0
YYD1_k127_6324476_11 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000000000000000006314 224.0
YYD1_k127_6324476_12 SAF - - - 0.00000000000000000000000000000000000000000003427 164.0
YYD1_k127_6324476_13 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.0000000000000000000000000000000000000003478 155.0
YYD1_k127_6324476_14 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.00000000000000000000000000046 121.0
YYD1_k127_6324476_15 Phenylacetic acid degradation protein PaaY K02617 - - 0.000000000000000000000027 101.0
YYD1_k127_6324476_16 Gamma-glutamyl cyclotransferase, AIG2-like K19761 - - 0.00000000000000000000007297 105.0
YYD1_k127_6324476_17 ubiE/COQ5 methyltransferase family - - - 0.0000000000000007332 81.0
YYD1_k127_6324476_2 D-galactarate dehydratase / Altronate hydrolase, C terminus - - - 7.441e-220 691.0
YYD1_k127_6324476_3 Fumarate hydratase (Fumerase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 472.0
YYD1_k127_6324476_4 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 426.0
YYD1_k127_6324476_5 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 407.0
YYD1_k127_6324476_6 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 405.0
YYD1_k127_6324476_7 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 364.0
YYD1_k127_6324476_8 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 372.0
YYD1_k127_6324476_9 PFAM D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K16843 - 1.1.1.310 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 340.0
YYD1_k127_6330256_0 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 567.0
YYD1_k127_6330256_1 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 530.0
YYD1_k127_6330256_2 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007843 478.0
YYD1_k127_6330256_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 388.0
YYD1_k127_6330256_4 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 339.0
YYD1_k127_6330256_5 Enoyl-(Acyl carrier protein) reductase K00019,K18335 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 331.0
YYD1_k127_6330256_6 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 296.0
YYD1_k127_6330256_7 Cupin 2, conserved barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004662 257.0
YYD1_k127_6330256_8 Binding-protein-dependent transport system inner membrane component - - - 0.0000000001499 71.0
YYD1_k127_6331315_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296 - - 0.0 1481.0
YYD1_k127_6331315_1 Bacterial extracellular solute-binding proteins, family 5 Middle K12368 - - 1.733e-257 806.0
YYD1_k127_6331315_10 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 323.0
YYD1_k127_6331315_12 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 307.0
YYD1_k127_6331315_13 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 294.0
YYD1_k127_6331315_14 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 288.0
YYD1_k127_6331315_15 transferase activity, transferring glycosyl groups K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005124 280.0
YYD1_k127_6331315_16 Polysaccharide pyruvyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005091 274.0
YYD1_k127_6331315_17 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005665 275.0
YYD1_k127_6331315_18 DNA-binding transcriptional activator of the SARP family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006572 265.0
YYD1_k127_6331315_19 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001018 253.0
YYD1_k127_6331315_2 Cys/Met metabolism PLP-dependent enzyme K01739,K01761 - 2.5.1.48,4.4.1.11 1.279e-200 635.0
YYD1_k127_6331315_20 Aspartyl Asparaginyl beta-hydroxylase - - - 0.0000000000000000000000000000000000000000000000000003603 195.0
YYD1_k127_6331315_21 Kdo2-lipid A biosynthetic process K02517,K20543,K22311 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016746,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.3.1.241,2.3.1.265 0.0000000000000000000000000000000000000000000000001439 189.0
YYD1_k127_6331315_22 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K19802 - 5.1.1.20 0.0000000000000000000000000000000000000000000006566 185.0
YYD1_k127_6331315_23 COG2801 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000003231 165.0
YYD1_k127_6331315_24 coenzyme F390 K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000003492 173.0
YYD1_k127_6331315_25 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000002144 138.0
YYD1_k127_6331315_26 ATP-grasp - - - 0.0000000000000000000000002321 120.0
YYD1_k127_6331315_27 Tripartite tricarboxylate transporter TctB family - - - 0.000000003888 67.0
YYD1_k127_6331315_28 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000008368 57.0
YYD1_k127_6331315_3 Binding-protein-dependent transport system inner membrane component K12369 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 501.0
YYD1_k127_6331315_4 Tripartite tricarboxylate transporter TctA K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009963 497.0
YYD1_k127_6331315_5 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 463.0
YYD1_k127_6331315_6 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 431.0
YYD1_k127_6331315_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000843 417.0
YYD1_k127_6331315_8 N-terminal TM domain of oligopeptide transport permease C K02034,K12370 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 347.0
YYD1_k127_6331315_9 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 335.0
YYD1_k127_6341585_0 Belongs to the aldehyde dehydrogenase family - - - 3.43e-245 765.0
YYD1_k127_6341585_1 acyl-CoA transferases carnitine dehydratase K18702 - 2.8.3.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 485.0
YYD1_k127_6341585_2 peptidase S45, penicillin amidase K01434 - 3.5.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 441.0
YYD1_k127_6355122_0 N-methylhydantoinase B acetone carboxylase, alpha subunit K01474 - 3.5.2.14 5.974e-280 869.0
YYD1_k127_6355122_1 N-methylhydantoinase A acetone carboxylase, beta subunit K01473 - 3.5.2.14 5.653e-279 872.0
YYD1_k127_6355122_2 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009213 501.0
YYD1_k127_6355122_3 Isocitrate lyase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 357.0
YYD1_k127_6355122_4 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006046 329.0
YYD1_k127_6355122_5 amino acid K01996,K11958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 323.0
YYD1_k127_6355122_6 abc transporter K01995,K10822 - 3.6.3.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008039 302.0
YYD1_k127_6355122_7 Isochorismatase family K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 286.0
YYD1_k127_6355122_8 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000005322 200.0
YYD1_k127_6355122_9 FAD binding domain - - - 0.00000000000000000001138 97.0
YYD1_k127_63691_0 Amino-transferase class IV K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000007083 265.0
YYD1_k127_63691_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001743 250.0
YYD1_k127_63691_2 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000007396 244.0
YYD1_k127_63691_3 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000000001381 150.0
YYD1_k127_6379036_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 1.709e-307 964.0
YYD1_k127_6379036_1 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA - - - 4.591e-288 903.0
YYD1_k127_6379036_10 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004859 354.0
YYD1_k127_6379036_11 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 354.0
YYD1_k127_6379036_12 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001688 278.0
YYD1_k127_6379036_13 Bacterial periplasmic substrate-binding proteins K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006866 290.0
YYD1_k127_6379036_14 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000001407 255.0
YYD1_k127_6379036_15 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001013 244.0
YYD1_k127_6379036_16 COG0765 ABC-type amino acid transport system, permease component K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000004266 241.0
YYD1_k127_6379036_17 Belongs to the thiolase family K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000001861 214.0
YYD1_k127_6379036_18 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000009115 179.0
YYD1_k127_6379036_2 esterase lipase - - - 9.542e-221 735.0
YYD1_k127_6379036_3 proline dipeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 582.0
YYD1_k127_6379036_4 Binding-protein-dependent transport system inner membrane component K02053,K02054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006537 598.0
YYD1_k127_6379036_5 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 542.0
YYD1_k127_6379036_6 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 548.0
YYD1_k127_6379036_7 AMP-binding enzyme K02182 - 6.2.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 509.0
YYD1_k127_6379036_8 fad dependent oxidoreductase K09471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 467.0
YYD1_k127_6379036_9 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 419.0
YYD1_k127_6446182_0 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 550.0
YYD1_k127_6446182_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 536.0
YYD1_k127_6446182_2 metal-dependent hydrolase of the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004276 386.0
YYD1_k127_6446182_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 335.0
YYD1_k127_6446182_4 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 295.0
YYD1_k127_6446182_5 FCD K11475 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001346 254.0
YYD1_k127_6446182_6 carbohydrate transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006337 243.0
YYD1_k127_6446182_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000002562 121.0
YYD1_k127_6446182_8 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000005272 102.0
YYD1_k127_6452966_0 ABC transporter substrate-binding protein K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 487.0
YYD1_k127_6452966_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 394.0
YYD1_k127_6452966_2 UTRA K03710 - - 0.00000000000000000000000000000000000000000000000000000000000000001012 237.0
YYD1_k127_6452966_3 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000006212 219.0
YYD1_k127_6452966_4 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000003445 96.0
YYD1_k127_6478553_0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 467.0
YYD1_k127_6478553_1 Carbon monoxide dehydrogenase operon C protein K21696 GO:0006355,GO:0006808,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 374.0
YYD1_k127_6478553_2 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 354.0
YYD1_k127_6478553_3 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003223 227.0
YYD1_k127_6478553_4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - - 0.0000000000000000000000000000000000000000000000000000000002205 208.0
YYD1_k127_6478553_5 Peptidase S24-like - - - 0.00000000000000000000000000000001515 131.0
YYD1_k127_6478553_6 - - - - 0.000000000000000000009907 97.0
YYD1_k127_6513346_0 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 2.532e-222 694.0
YYD1_k127_6513346_1 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007363 587.0
YYD1_k127_6513346_10 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000000000006022 188.0
YYD1_k127_6513346_11 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000003065 158.0
YYD1_k127_6513346_12 acyl-CoA transferases carnitine dehydratase K18702 - 2.8.3.19 0.00000000000000000000000000000009006 125.0
YYD1_k127_6513346_13 Thioesterase-like superfamily K07107 - - 0.00000001887 58.0
YYD1_k127_6513346_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 482.0
YYD1_k127_6513346_3 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 390.0
YYD1_k127_6513346_4 Enoyl-CoA hydratase/isomerase K01692,K05605 - 3.1.2.4,4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 387.0
YYD1_k127_6513346_5 alpha/beta hydrolase fold K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 353.0
YYD1_k127_6513346_6 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 342.0
YYD1_k127_6513346_7 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001236 247.0
YYD1_k127_6513346_8 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000002331 207.0
YYD1_k127_6513346_9 COG1846 Transcriptional regulators - - - 0.0000000000000000000000000000000000000000000000000002532 189.0
YYD1_k127_6523724_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 1.138e-304 951.0
YYD1_k127_6523724_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.358e-237 741.0
YYD1_k127_6523724_10 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 358.0
YYD1_k127_6523724_11 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009931 353.0
YYD1_k127_6523724_12 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 338.0
YYD1_k127_6523724_13 protein conserved in bacteria K09949 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 300.0
YYD1_k127_6523724_14 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003335 251.0
YYD1_k127_6523724_15 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000008631 235.0
YYD1_k127_6523724_16 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000211 214.0
YYD1_k127_6523724_17 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000006192 196.0
YYD1_k127_6523724_18 COG2825 Outer membrane protein - - - 0.000000000000000000000000000002296 128.0
YYD1_k127_6523724_19 Competence protein K02238 - - 0.00000000000000000000149 100.0
YYD1_k127_6523724_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 5.065e-207 657.0
YYD1_k127_6523724_20 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000003641 59.0
YYD1_k127_6523724_3 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 509.0
YYD1_k127_6523724_4 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008642 494.0
YYD1_k127_6523724_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 428.0
YYD1_k127_6523724_6 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 421.0
YYD1_k127_6523724_7 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 409.0
YYD1_k127_6523724_8 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 381.0
YYD1_k127_6523724_9 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009296 363.0
YYD1_k127_6543032_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1054.0
YYD1_k127_6543032_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 1.484e-196 624.0
YYD1_k127_6543032_10 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000000000000000000000000000000001209 202.0
YYD1_k127_6543032_11 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000003863 190.0
YYD1_k127_6543032_12 Phosphohistidine phosphatase SixA K08296 - - 0.000000000000000000000000000000000000004618 151.0
YYD1_k127_6543032_13 COG0593 ATPase involved in DNA replication initiation - - - 0.00000000000000000000000000000000000005643 148.0
YYD1_k127_6543032_14 COG0593 ATPase involved in DNA replication initiation - - - 0.00000000000000000003047 91.0
YYD1_k127_6543032_15 Predicted permease YjgP/YjgQ family K11720 - - 0.000007049 49.0
YYD1_k127_6543032_2 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 476.0
YYD1_k127_6543032_3 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 432.0
YYD1_k127_6543032_4 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 380.0
YYD1_k127_6543032_5 Predicted permease YjgP/YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 345.0
YYD1_k127_6543032_6 PFAM CHAD domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 311.0
YYD1_k127_6543032_7 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003083 274.0
YYD1_k127_6543032_8 Uncharacterized protein conserved in bacteria (DUF2066) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001091 258.0
YYD1_k127_6543032_9 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000003346 222.0
YYD1_k127_6551204_0 Ornithine cyclodeaminase/mu-crystallin family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 539.0
YYD1_k127_6551204_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 498.0
YYD1_k127_6551204_2 ABC transporter K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 414.0
YYD1_k127_6551204_3 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 314.0
YYD1_k127_6551204_4 EM COG0329 Dihydrodipicolinate synthase N-acetylneuraminate lyase K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000009168 254.0
YYD1_k127_6551204_5 ABC-type proline glycine betaine transport systems permease component K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000000001056 241.0
YYD1_k127_6551204_6 Binding-protein-dependent transport system inner membrane component K05845,K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000002094 235.0
YYD1_k127_6551204_7 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000005552 222.0
YYD1_k127_6551204_8 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000006245 208.0
YYD1_k127_6555825_0 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 2.63e-287 895.0
YYD1_k127_6555825_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 6.791e-250 786.0
YYD1_k127_6555825_2 transport system fused permease components - - - 7.107e-196 619.0
YYD1_k127_6555825_3 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 544.0
YYD1_k127_6555825_4 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006715 451.0
YYD1_k127_6555825_5 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 390.0
YYD1_k127_6555825_6 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001351 248.0
YYD1_k127_6555825_7 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000002019 190.0
YYD1_k127_6576750_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 6.832e-304 947.0
YYD1_k127_6576750_1 AMP-binding enzyme C-terminal domain K00666,K02182 - 6.2.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 603.0
YYD1_k127_6576750_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 452.0
YYD1_k127_6576750_3 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 373.0
YYD1_k127_6576750_4 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004885 357.0
YYD1_k127_6576750_5 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 328.0
YYD1_k127_6576750_6 protein conserved in bacteria K09987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009857 265.0
YYD1_k127_6576750_7 - - - - 0.0000000000000001426 81.0
YYD1_k127_6576750_8 Protein of unknown function (DUF1192) - - - 0.000000000008718 71.0
YYD1_k127_6617178_0 Polyhydroxyalkanoate synthesis repressor - - - 0.00000000000000000000000000000000000000000000000000000000000000000001491 239.0
YYD1_k127_6617178_1 Protein of unknown function (DUF3105) - - - 0.0000000000000000000000000000000000000000000000000005045 187.0
YYD1_k127_6617178_2 - - - - 0.0000000000003093 75.0
YYD1_k127_6643690_0 Histidine kinase A domain protein - - - 0.0 1150.0
YYD1_k127_6643690_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 8.588e-293 906.0
YYD1_k127_6643690_10 Belongs to the ABC transporter superfamily K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 391.0
YYD1_k127_6643690_11 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 380.0
YYD1_k127_6643690_12 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 301.0
YYD1_k127_6643690_13 (Lipo)protein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000002075 231.0
YYD1_k127_6643690_14 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000000000000000000000000000000000000000000000001841 181.0
YYD1_k127_6643690_15 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000005698 175.0
YYD1_k127_6643690_16 Methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000003101 140.0
YYD1_k127_6643690_17 - - - - 0.0000000000000000000000000000001016 134.0
YYD1_k127_6643690_18 Domain of unknown function (DUF4212) - - - 0.00000000000003338 76.0
YYD1_k127_6643690_19 Major facilitator superfamily - - - 0.00000006709 64.0
YYD1_k127_6643690_2 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 594.0
YYD1_k127_6643690_20 - - - - 0.0000001112 61.0
YYD1_k127_6643690_3 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 555.0
YYD1_k127_6643690_4 EXOIII K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 556.0
YYD1_k127_6643690_5 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 444.0
YYD1_k127_6643690_6 cobalamin synthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007807 439.0
YYD1_k127_6643690_7 Binding-protein-dependent transport system inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 429.0
YYD1_k127_6643690_8 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 422.0
YYD1_k127_6643690_9 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 428.0
YYD1_k127_6648170_0 Binding-protein-dependent transport system inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 454.0
YYD1_k127_6648170_1 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009428 459.0
YYD1_k127_6648170_10 - - - - 0.0000000000000000000000000001726 117.0
YYD1_k127_6648170_11 17 kDa outer membrane surface antigen - - - 0.000002218 51.0
YYD1_k127_6648170_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 422.0
YYD1_k127_6648170_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006898 375.0
YYD1_k127_6648170_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 369.0
YYD1_k127_6648170_5 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 345.0
YYD1_k127_6648170_6 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 283.0
YYD1_k127_6648170_7 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000000008181 199.0
YYD1_k127_6648170_8 - - - - 0.000000000000000000000000000000000000000000000001029 180.0
YYD1_k127_6648170_9 Putative AphA-like transcriptional regulator - - - 0.00000000000000000000000000000000000000001497 159.0
YYD1_k127_6655998_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 9.907e-303 942.0
YYD1_k127_6655998_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004214 535.0
YYD1_k127_6655998_10 Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma- L-glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine - - - 0.000000000000000000000000000000000000000000000000004524 195.0
YYD1_k127_6655998_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 499.0
YYD1_k127_6655998_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 414.0
YYD1_k127_6655998_4 Belongs to the amidase family K01426,K19795 - 3.5.1.4,3.5.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006756 389.0
YYD1_k127_6655998_5 TRAP transporter solute receptor TAXI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000826 380.0
YYD1_k127_6655998_6 Histidine kinase K07716,K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 319.0
YYD1_k127_6655998_7 Xanthine and CO dehydrogenases maturation factor XdhC CoxF family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004509 278.0
YYD1_k127_6655998_8 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008881 245.0
YYD1_k127_6655998_9 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase UDP-N-acetylglucosamine-1-phosphate transferase K02851,K13007 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000001968 231.0
YYD1_k127_6668880_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 3.727e-232 732.0
YYD1_k127_6668880_1 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004617 540.0
YYD1_k127_6668880_10 Restriction endonuclease - - - 0.00000000000000007167 85.0
YYD1_k127_6668880_2 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 514.0
YYD1_k127_6668880_3 Peptidase family M20/M25/M40 K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006743 511.0
YYD1_k127_6668880_4 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003378 503.0
YYD1_k127_6668880_5 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009553 491.0
YYD1_k127_6668880_6 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 461.0
YYD1_k127_6668880_7 Pyridoxal-phosphate dependent enzyme K01751 - 4.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 459.0
YYD1_k127_6668880_8 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 422.0
YYD1_k127_6668880_9 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000532 184.0
YYD1_k127_6671933_0 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 457.0
YYD1_k127_6671933_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007995 345.0
YYD1_k127_6671933_2 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005156 288.0
YYD1_k127_6671933_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000001452 131.0
YYD1_k127_6702064_0 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 615.0
YYD1_k127_6702064_1 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 542.0
YYD1_k127_6702064_10 UPF0056 inner membrane protein K05595 - - 0.0000000000000000000000000000000000000000000000000001874 192.0
YYD1_k127_6702064_11 Haemolysin-III related K11068 - - 0.000000000000000000000000000000000000000000001639 179.0
YYD1_k127_6702064_13 - - - - 0.000000000000000000000000000000001707 140.0
YYD1_k127_6702064_14 ABC-type transport auxiliary lipoprotein component K09857 - - 0.000000000000000000000000008225 117.0
YYD1_k127_6702064_15 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000009455 93.0
YYD1_k127_6702064_16 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions - - - 0.00000000000004047 73.0
YYD1_k127_6702064_17 17 kDa outer membrane surface antigen - - - 0.000003411 54.0
YYD1_k127_6702064_2 Paraquat-inducible protein B K06192 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000899 527.0
YYD1_k127_6702064_3 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 507.0
YYD1_k127_6702064_4 Paraquat-inducible protein A K03808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000934 497.0
YYD1_k127_6702064_5 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005676 312.0
YYD1_k127_6702064_6 Protein of unknown function (DUF2950) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 297.0
YYD1_k127_6702064_7 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006197 292.0
YYD1_k127_6702064_8 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 296.0
YYD1_k127_6702064_9 OsmC-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000002969 242.0
YYD1_k127_6717069_0 Glycosyl hydrolases family 15 - - - 6.947e-235 742.0
YYD1_k127_6717069_1 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 564.0
YYD1_k127_6717069_10 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 328.0
YYD1_k127_6717069_11 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 312.0
YYD1_k127_6717069_12 haloacid dehalogenase, type II K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000003379 271.0
YYD1_k127_6717069_13 spore germination - - - 0.000000000000000000000000000000000000000000000000000000000000000000003968 244.0
YYD1_k127_6717069_14 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000000000000000000000004384 217.0
YYD1_k127_6717069_15 Oxidoreductase FAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000001933 213.0
YYD1_k127_6717069_16 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000000000000000000002328 198.0
YYD1_k127_6717069_17 Bacterial regulatory proteins, tetR family K09017 - - 0.00000000000000000000000000000000000000000000000354 181.0
YYD1_k127_6717069_18 Short-chain dehydrogenase reductase sdr - - - 0.000000000000001175 77.0
YYD1_k127_6717069_2 Binding-protein-dependent transport system inner membrane component K02033 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 521.0
YYD1_k127_6717069_3 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 511.0
YYD1_k127_6717069_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 440.0
YYD1_k127_6717069_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 441.0
YYD1_k127_6717069_6 P-aminobenzoate N-oxygenase AurF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 407.0
YYD1_k127_6717069_7 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 398.0
YYD1_k127_6717069_8 ATPases associated with a variety of cellular activities K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 400.0
YYD1_k127_6717069_9 ABC transporter K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008721 339.0
YYD1_k127_6721558_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1191.0
YYD1_k127_6721558_1 N-terminal domain of oxidoreductase K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 355.0
YYD1_k127_6721558_2 COG0119 Isopropylmalate homocitrate citramalate synthases K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 283.0
YYD1_k127_6721558_3 Protein of unknown function (DUF1489) - - - 0.0000000000000000000000000000000000000001548 155.0
YYD1_k127_6753816_0 Belongs to the IlvD Edd family K01690 - 4.2.1.12 2.131e-302 934.0
YYD1_k127_6753816_1 Bacterial extracellular solute-binding protein K02027 - - 2.885e-222 696.0
YYD1_k127_6753816_2 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006101 584.0
YYD1_k127_6753816_3 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004715 533.0
YYD1_k127_6753816_4 ABC transporter K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000084 515.0
YYD1_k127_6753816_5 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 506.0
YYD1_k127_6753816_6 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 439.0
YYD1_k127_6753816_7 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000779 256.0
YYD1_k127_6753816_8 COG1335 Amidases related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000002304 219.0
YYD1_k127_6753816_9 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000001798 84.0
YYD1_k127_679994_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.258e-247 783.0
YYD1_k127_679994_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000007329 229.0
YYD1_k127_6800829_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1521.0
YYD1_k127_6800829_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1220.0
YYD1_k127_6800829_10 Phytoene synthase K21678 - 2.5.1.103 0.00000000000000000000000000000000000000000000000000000000000001954 229.0
YYD1_k127_6800829_11 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000000000000002833 220.0
YYD1_k127_6800829_12 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000004864 202.0
YYD1_k127_6800829_13 Endoribonuclease L-PSP - - - 0.00000000000000000000000008431 116.0
YYD1_k127_6800829_2 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 1.938e-225 707.0
YYD1_k127_6800829_3 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 5.73e-204 646.0
YYD1_k127_6800829_4 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 444.0
YYD1_k127_6800829_5 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 392.0
YYD1_k127_6800829_6 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007618 252.0
YYD1_k127_6800829_7 Phytoene squalene synthetase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000001502 254.0
YYD1_k127_6800829_8 Squalene/phytoene synthase K21678,K21679 - 2.5.1.103,4.2.3.156 0.000000000000000000000000000000000000000000000000000000000000000000002349 257.0
YYD1_k127_6800829_9 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000001044 235.0
YYD1_k127_6818560_0 Psort location Cytoplasmic, score 7.50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007962 558.0
YYD1_k127_6818560_1 3-Hydroxyisobutyrate dehydrogenase K00020,K00042 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 376.0
YYD1_k127_6818560_2 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 328.0
YYD1_k127_6818560_3 Beta-lactamase superfamily domain K06167 - 3.1.4.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 295.0
YYD1_k127_6818560_4 Enoyl-(Acyl carrier protein) reductase K16066 - 1.1.1.381 0.000000000000000000000000000000000000000000000000000000000000000000000000000009646 277.0
YYD1_k127_6818560_5 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002657 268.0
YYD1_k127_6818560_6 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007854 247.0
YYD1_k127_6818560_7 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000171 78.0
YYD1_k127_6874531_0 tRNA (guanine-N7-)-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 503.0
YYD1_k127_6874531_1 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 297.0
YYD1_k127_6874531_2 GYD domain - - - 0.0000000000000000000000000000000000000007284 154.0
YYD1_k127_6874531_3 Adenylate cyclase - - - 0.0000000000000000000000000000000000002151 143.0
YYD1_k127_6874531_4 Resolvase, N terminal domain - - - 0.0000004227 59.0
YYD1_k127_718188_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004741 602.0
YYD1_k127_718188_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 599.0
YYD1_k127_718188_10 Pyrimidine-specific ribonucleoside hydrolase RihA K01239 - 3.2.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 331.0
YYD1_k127_718188_11 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 331.0
YYD1_k127_718188_12 Protein of unknown function, DUF547 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 301.0
YYD1_k127_718188_13 Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate K00598 - 2.1.1.144 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 287.0
YYD1_k127_718188_14 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.000000000000000000000000000000000000000000000000000000000000000329 226.0
YYD1_k127_718188_15 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000001555 228.0
YYD1_k127_718188_16 PFAM Ion transport 2 domain protein - - - 0.00000000000000000000000000000000005338 139.0
YYD1_k127_718188_17 Domain of unknown function (DUF4864) - - - 0.0000000000000000000000000000000003092 134.0
YYD1_k127_718188_2 Peptidase dimerisation domain K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 576.0
YYD1_k127_718188_3 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 530.0
YYD1_k127_718188_4 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 484.0
YYD1_k127_718188_5 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 475.0
YYD1_k127_718188_6 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 421.0
YYD1_k127_718188_7 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 417.0
YYD1_k127_718188_8 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 370.0
YYD1_k127_718188_9 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006473 361.0
YYD1_k127_723834_0 Predicted integral membrane protein (DUF2189) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 383.0
YYD1_k127_723834_1 Domain of unknown function (DUF4394) - - - 0.0000000000000000000000000000000000000000000000000000000000000000004544 242.0
YYD1_k127_723834_2 - - - - 0.00000000000000000000000001038 115.0
YYD1_k127_723834_3 Phosphate ABC transporter substrate-binding protein, PhoT family K02040 - - 0.00000000000000000000003019 110.0
YYD1_k127_723834_4 Bacterial regulatory proteins, tetR family - - - 0.000000001674 60.0
YYD1_k127_756087_0 GTP1/OBG K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 406.0
YYD1_k127_756087_1 Linear amide C-N hydrolases, choloylglycine hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000171 266.0
YYD1_k127_756087_2 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000004078 135.0
YYD1_k127_756087_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000000002766 137.0
YYD1_k127_756087_4 - - - - 0.000002722 53.0
YYD1_k127_762159_0 Amidohydrolase family K01464 - 3.5.2.2 1.531e-226 709.0
YYD1_k127_762159_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.686e-214 674.0
YYD1_k127_762159_10 Domain of unknown function (DUF1476) - - - 0.0000000000000000000000000000006781 126.0
YYD1_k127_762159_11 Putative zinc- or iron-chelating domain - - - 0.000000000000000000000000006398 122.0
YYD1_k127_762159_12 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000000008798 109.0
YYD1_k127_762159_13 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000000000000000003475 90.0
YYD1_k127_762159_14 Glycosyl transferase - - - 0.000000004918 68.0
YYD1_k127_762159_15 Ethanolamine utilisation protein EutQ - - - 0.00000001377 63.0
YYD1_k127_762159_16 Transport and Golgi organisation 2 - - - 0.00003243 50.0
YYD1_k127_762159_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 446.0
YYD1_k127_762159_3 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 446.0
YYD1_k127_762159_4 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 344.0
YYD1_k127_762159_5 Asp Glu hydantoin racemase K01799 - 5.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 314.0
YYD1_k127_762159_6 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 302.0
YYD1_k127_762159_7 Nitrile hydratase, alpha chain K01721,K20807 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000001929 244.0
YYD1_k127_762159_8 FCD - - - 0.00000000000000000000000000000000000000000000000001543 188.0
YYD1_k127_762159_9 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000004359 139.0
YYD1_k127_766793_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0 1249.0
YYD1_k127_766793_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 563.0
YYD1_k127_766793_10 acid transport K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 431.0
YYD1_k127_766793_11 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 437.0
YYD1_k127_766793_12 PFAM ABC transporter K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 424.0
YYD1_k127_766793_13 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 368.0
YYD1_k127_766793_14 sulfate adenylyltransferase (ATP) activity K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 371.0
YYD1_k127_766793_15 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 343.0
YYD1_k127_766793_16 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 341.0
YYD1_k127_766793_17 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 332.0
YYD1_k127_766793_18 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 312.0
YYD1_k127_766793_19 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 300.0
YYD1_k127_766793_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 537.0
YYD1_k127_766793_20 Binding-protein-dependent transport system inner membrane component K02029,K10019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 295.0
YYD1_k127_766793_21 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003642 276.0
YYD1_k127_766793_22 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005119 282.0
YYD1_k127_766793_23 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005646 270.0
YYD1_k127_766793_24 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005286 259.0
YYD1_k127_766793_25 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008269 243.0
YYD1_k127_766793_26 COG0725 ABC-type molybdate transport system, periplasmic component K02020 - - 0.000000000000000000000000000000000000000000000000000000000000000000003141 246.0
YYD1_k127_766793_27 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000000000002073 227.0
YYD1_k127_766793_28 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000004472 199.0
YYD1_k127_766793_29 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111,K21054 - 1.1.1.402,1.1.5.3 0.000000000000000000000000000000000000000000006119 167.0
YYD1_k127_766793_3 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 526.0
YYD1_k127_766793_30 SOS response K14160 - - 0.000000000000000000000000000000000009999 146.0
YYD1_k127_766793_31 COG3267 Type II secretory pathway, component ExeA K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000006611 151.0
YYD1_k127_766793_32 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.00000000000000000000000000001518 123.0
YYD1_k127_766793_33 - - - - 0.00000000000007489 79.0
YYD1_k127_766793_34 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.000000000001517 81.0
YYD1_k127_766793_35 Histidine kinase K14986 - 2.7.13.3 0.00000179 59.0
YYD1_k127_766793_4 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 528.0
YYD1_k127_766793_5 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009201 504.0
YYD1_k127_766793_6 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01760 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 482.0
YYD1_k127_766793_7 acid transport system permease K09970 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 478.0
YYD1_k127_766793_8 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 464.0
YYD1_k127_766793_9 Adenylylsulphate kinase K00955 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 451.0
YYD1_k127_767942_0 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 2.387e-317 988.0
YYD1_k127_767942_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.514e-205 645.0
YYD1_k127_767942_2 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
YYD1_k127_767942_3 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000001979 105.0
YYD1_k127_767942_4 Domain of unknown function (DUF4115) K15539 - - 0.000000000004267 73.0
YYD1_k127_784822_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 494.0
YYD1_k127_784822_1 Iron-containing alcohol dehydrogenase K00043 - 1.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009616 449.0
YYD1_k127_784822_2 Belongs to the DapA family K01714 - 4.3.3.7 0.000000000000000000000000000001951 122.0
YYD1_k127_784822_3 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 0.000000000000004884 78.0
YYD1_k127_812725_0 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007986 298.0
YYD1_k127_812725_1 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004071 289.0
YYD1_k127_829571_0 Glutaminyl-tRNA synthetase K01886 - 6.1.1.18 6.556e-293 906.0
YYD1_k127_829571_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 6.442e-282 872.0
YYD1_k127_829571_10 FR47-like protein - - - 0.000000000000000000000000000000000001333 145.0
YYD1_k127_829571_11 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000002404 98.0
YYD1_k127_829571_12 ABC transporter substrate binding protein - - - 0.0000000000001597 72.0
YYD1_k127_829571_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 2.543e-251 782.0
YYD1_k127_829571_3 RESPONSE REGULATOR receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 567.0
YYD1_k127_829571_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 492.0
YYD1_k127_829571_5 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 400.0
YYD1_k127_829571_6 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 386.0
YYD1_k127_829571_7 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007334 368.0
YYD1_k127_829571_8 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000003453 258.0
YYD1_k127_829571_9 - - - - 0.000000000000000000000000000000000000000000000005194 176.0
YYD1_k127_829802_0 Efflux pump membrane transporter K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005927 558.0
YYD1_k127_829802_1 Catalyzes the sodium-dependent transport of glutamate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001806 283.0
YYD1_k127_829802_2 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030,K10001 - - 0.0000000000002782 72.0
YYD1_k127_833688_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates - - - 0.0 1020.0
YYD1_k127_833688_1 AMP-binding enzyme K12508 - 6.2.1.34 6.057e-245 770.0
YYD1_k127_833688_10 PFAM flavin reductase domain protein, FMN-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 308.0
YYD1_k127_833688_11 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000721 271.0
YYD1_k127_833688_12 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000006938 142.0
YYD1_k127_833688_13 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000004346 136.0
YYD1_k127_833688_14 pfkB family carbohydrate kinase K00852,K18478 - 2.7.1.15,2.7.1.184 0.000000000000000000000000000001627 126.0
YYD1_k127_833688_15 Belongs to the carbohydrate kinase PfkB family K18478 - 2.7.1.184 0.00000000000000000006294 94.0
YYD1_k127_833688_2 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 4.586e-201 638.0
YYD1_k127_833688_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 543.0
YYD1_k127_833688_4 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004125 497.0
YYD1_k127_833688_5 SbmA/BacA-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 483.0
YYD1_k127_833688_6 Pyruvate ferredoxin/flavodoxin oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 466.0
YYD1_k127_833688_7 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 400.0
YYD1_k127_833688_8 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 332.0
YYD1_k127_833688_9 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 330.0
YYD1_k127_849112_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0 1314.0
YYD1_k127_849112_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.651e-280 878.0
YYD1_k127_849112_2 protein conserved in bacteria K07793 - - 8.048e-240 749.0
YYD1_k127_849112_3 TRAP transporter solute receptor TAXI family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 432.0
YYD1_k127_849112_4 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 361.0
YYD1_k127_849112_5 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000542 261.0
YYD1_k127_849112_6 Carbon monoxide dehydrogenase subunit G (CoxG) K09386 - - 0.000000000000000000000000000000000000000000000000000000000000003406 222.0
YYD1_k127_849112_7 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000000000000000000000000000000001444 224.0
YYD1_k127_849112_8 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000001295 164.0
YYD1_k127_849112_9 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000000000000874 156.0
YYD1_k127_880223_0 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 0.0 1112.0
YYD1_k127_880223_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 1.2e-313 989.0
YYD1_k127_880223_10 Ornithine cyclodeaminase/mu-crystallin family K01750,K19743 - 1.5.1.1,4.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 411.0
YYD1_k127_880223_11 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 404.0
YYD1_k127_880223_12 Sarcosine oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 393.0
YYD1_k127_880223_13 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K14981 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006811 364.0
YYD1_k127_880223_14 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 364.0
YYD1_k127_880223_15 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 333.0
YYD1_k127_880223_16 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 287.0
YYD1_k127_880223_17 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001405 280.0
YYD1_k127_880223_18 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000001828 235.0
YYD1_k127_880223_19 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.0000000000000000000000000000000000000000000000000000000006466 208.0
YYD1_k127_880223_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.946e-251 782.0
YYD1_k127_880223_20 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000002768 180.0
YYD1_k127_880223_21 COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 - - 0.0000000000000000000000000000000000000000003435 163.0
YYD1_k127_880223_22 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000007688 156.0
YYD1_k127_880223_23 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000003306 151.0
YYD1_k127_880223_24 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000004177 153.0
YYD1_k127_880223_25 COG1925 Phosphotransferase system, HPr-related proteins K11189 - - 0.00000000000000000000000001413 113.0
YYD1_k127_880223_26 2'-5' RNA ligase superfamily - - - 0.0000000000000000001564 95.0
YYD1_k127_880223_27 Pfam:DUF1049 - - - 0.00000000002218 69.0
YYD1_k127_880223_3 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 1.377e-224 701.0
YYD1_k127_880223_4 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 4e-220 698.0
YYD1_k127_880223_5 PAS PAC domain-containing protein - - - 1.835e-207 666.0
YYD1_k127_880223_6 Stimulus-sensing domain K14980 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 543.0
YYD1_k127_880223_7 reductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 511.0
YYD1_k127_880223_8 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 471.0
YYD1_k127_880223_9 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 431.0
YYD1_k127_893283_0 ABC transporter transmembrane region K02021 - - 3.069e-298 940.0
YYD1_k127_893283_1 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 3.501e-274 866.0
YYD1_k127_893283_10 Thioredoxin K05838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006753 357.0
YYD1_k127_893283_11 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 331.0
YYD1_k127_893283_12 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 296.0
YYD1_k127_893283_13 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001035 246.0
YYD1_k127_893283_14 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000003185 235.0
YYD1_k127_893283_15 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000004831 194.0
YYD1_k127_893283_16 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000000005718 192.0
YYD1_k127_893283_17 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000000006821 187.0
YYD1_k127_893283_18 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000004271 181.0
YYD1_k127_893283_19 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000004903 154.0
YYD1_k127_893283_2 Ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 558.0
YYD1_k127_893283_20 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000007547 143.0
YYD1_k127_893283_21 S-adenosyl-L-methionine methyltransferase - - - 0.00000000000000000000000000000000005995 147.0
YYD1_k127_893283_22 protein conserved in bacteria K09796 - - 0.00000000000000000000000002037 114.0
YYD1_k127_893283_23 Belongs to the UPF0434 family K09791 - - 0.0000000000000000000000000997 107.0
YYD1_k127_893283_24 Vibrio cholerae RfbT protein - - - 0.00000000000000000000005573 109.0
YYD1_k127_893283_25 Pfam:DUF461 K09796 - - 0.00000000006096 69.0
YYD1_k127_893283_26 Alpha beta hydrolase - - - 0.000008759 58.0
YYD1_k127_893283_3 Glycosyltransferase family 28 C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 550.0
YYD1_k127_893283_4 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 488.0
YYD1_k127_893283_5 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 469.0
YYD1_k127_893283_6 COG0436 Aspartate tyrosine aromatic aminotransferase K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 462.0
YYD1_k127_893283_7 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 398.0
YYD1_k127_893283_8 COG0708 Exonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 365.0
YYD1_k127_893283_9 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 353.0
YYD1_k127_901340_0 lytic transglycosylase activity - - - 0.0000000000000000000000000000000003156 144.0
YYD1_k127_945813_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 2.317e-256 820.0
YYD1_k127_945813_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.721e-209 671.0
YYD1_k127_945813_10 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000003404 130.0
YYD1_k127_945813_11 ABC transporter substrate binding protein K01989 - - 0.000000000000000000001394 96.0
YYD1_k127_945813_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 7.036e-200 658.0
YYD1_k127_945813_3 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 475.0
YYD1_k127_945813_4 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000577 487.0
YYD1_k127_945813_5 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K05712 - 1.14.13.127 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 427.0
YYD1_k127_945813_6 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 336.0
YYD1_k127_945813_7 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007972 317.0
YYD1_k127_945813_8 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 315.0
YYD1_k127_945813_9 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000000000000000000000001443 158.0
YYD1_k127_972948_0 COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family K18459 - 3.5.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 497.0
YYD1_k127_972948_1 Mg2 and Co2 transporter CorB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 489.0
YYD1_k127_972948_10 Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols K04101,K15755 - 1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 311.0
YYD1_k127_972948_11 Oxidoreductase FAD-binding domain K15765 - 1.18.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001443 275.0
YYD1_k127_972948_12 MlaD protein K02067,K06192 - - 0.00000000000000000000000000000000000000000000000000000000000000000001639 244.0
YYD1_k127_972948_13 COG1247 Sortase and related acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000009549 229.0
YYD1_k127_972948_14 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000000000000000000000000000000000000139 204.0
YYD1_k127_972948_15 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000001008 197.0
YYD1_k127_972948_16 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000005423 201.0
YYD1_k127_972948_17 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000000000000006454 168.0
YYD1_k127_972948_18 Haem-degrading - - - 0.000000000000000000000000000000000000000000002601 175.0
YYD1_k127_972948_19 LysE type translocator - - - 0.0000000000000000000000000000000000000000004627 165.0
YYD1_k127_972948_2 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit K15751 - 1.14.12.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 481.0
YYD1_k127_972948_20 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000007044 173.0
YYD1_k127_972948_21 - - - - 0.000000000000000000000000000000008549 147.0
YYD1_k127_972948_22 Belongs to the BolA IbaG family K05527,K22066 - - 0.0000000000000000000000000000002241 126.0
YYD1_k127_972948_23 Sterol carrier protein - - - 0.000000000000000000000000008215 123.0
YYD1_k127_972948_24 Rieske-like [2Fe-2S] domain - - - 0.0000000000000000000000007519 117.0
YYD1_k127_972948_25 DNA repair - - - 0.00000000000000000000001825 102.0
YYD1_k127_972948_27 Ankyrin repeats (3 copies) K06867 - - 0.000000002107 64.0
YYD1_k127_972948_28 Ribbon-helix-helix domain - - - 0.0000168 51.0
YYD1_k127_972948_3 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 476.0
YYD1_k127_972948_4 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004145 394.0
YYD1_k127_972948_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006507 380.0
YYD1_k127_972948_6 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 363.0
YYD1_k127_972948_7 Putative neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 364.0
YYD1_k127_972948_8 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 345.0
YYD1_k127_972948_9 hydrolase activity, acting on ester bonds K10216,K15756 - 3.7.1.13,3.7.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 320.0
YYD1_k127_981677_0 ABC transporter transmembrane region K12541 - - 3.539e-229 731.0
YYD1_k127_981677_1 Type II/IV secretion system protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 565.0
YYD1_k127_981677_10 Pilus assembly protein - - - 0.0000000000000000000000000000000000000000000000000003302 200.0
YYD1_k127_981677_11 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000006168 195.0
YYD1_k127_981677_12 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K20444 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000005837 180.0
YYD1_k127_981677_13 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000002182 178.0
YYD1_k127_981677_14 HlyD membrane-fusion protein of T1SS K02022,K12542 - - 0.000000000000000000000000000000000008008 148.0
YYD1_k127_981677_15 Glycosyltransferase family 87 - - - 0.000000000000000000000000000000000119 148.0
YYD1_k127_981677_16 - - - - 0.0000000000000000000000000298 123.0
YYD1_k127_981677_17 peptidase K02278 - 3.4.23.43 0.000000000000000000001055 102.0
YYD1_k127_981677_18 PFAM TadE family protein - - - 0.0000000000000000002085 102.0
YYD1_k127_981677_19 lysyltransferase activity K07027 - - 0.00000000000000006876 92.0
YYD1_k127_981677_2 Pilus formation protein N terminal region K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 441.0
YYD1_k127_981677_20 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000003552 79.0
YYD1_k127_981677_22 Flp Fap pilin component K02651 - - 0.000000001028 62.0
YYD1_k127_981677_23 PFAM Flp Fap pilin component K02651 - - 0.000000003931 61.0
YYD1_k127_981677_24 Ribbon-helix-helix domain - - - 0.00000001771 64.0
YYD1_k127_981677_25 Flp Fap pilin component K02651 - - 0.00000001803 58.0
YYD1_k127_981677_26 TadE-like protein - - - 0.00000009581 62.0
YYD1_k127_981677_27 - - - - 0.0005947 49.0
YYD1_k127_981677_3 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 386.0
YYD1_k127_981677_4 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 347.0
YYD1_k127_981677_5 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009865 348.0
YYD1_k127_981677_6 Flp pilus assembly protein RcpC/CpaB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000785 265.0
YYD1_k127_981677_7 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000004228 224.0
YYD1_k127_981677_8 Type II secretion system (T2SS), protein F - - - 0.000000000000000000000000000000000000000000000000000000000001776 221.0
YYD1_k127_981677_9 Type II secretion system (T2SS), protein F K12511 - - 0.0000000000000000000000000000000000000000000000000000000000514 217.0
YYD1_k127_998578_0 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000003465 228.0
YYD1_k127_998578_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000001246 188.0
YYD1_k127_998578_2 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000004064 190.0