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Overview

ID MAG04626
Name YYD1_bin.4
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family SG8-39
Genus SCGC-AG-212-J23
Species SCGC-AG-212-J23 sp025929745
Assembly information
Completeness (%) 92.76
Contamination (%) 7.25
GC content (%) 66.0
N50 (bp) 7,577
Genome size (bp) 3,489,576

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3858

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1002434_0 Belongs to the peptidase M16 family K07263 - - 1.61e-273 869.0
YYD1_k127_1002434_1 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 3.938e-222 700.0
YYD1_k127_1002434_10 Branched-chain amino acid transport protein (AzlD) - - - 0.00000004844 62.0
YYD1_k127_1002434_11 Acetyltransferase (GNAT) domain - - - 0.000686 44.0
YYD1_k127_1002434_2 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004991 362.0
YYD1_k127_1002434_3 Redoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000002836 246.0
YYD1_k127_1002434_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001052 228.0
YYD1_k127_1002434_5 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000008867 208.0
YYD1_k127_1002434_6 Branched-chain amino acid permease - - - 0.000000000000000000000000000000000000000000000004021 183.0
YYD1_k127_1002434_7 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000001045 164.0
YYD1_k127_1002434_8 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000002445 103.0
YYD1_k127_1002434_9 Acetyltransferase (GNAT) domain K03828 - - 0.000000008755 60.0
YYD1_k127_1017447_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 489.0
YYD1_k127_1017447_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007863 489.0
YYD1_k127_1017447_2 PFAM Cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000001026 181.0
YYD1_k127_1039954_0 Amidohydrolase K07045 - - 3.143e-196 626.0
YYD1_k127_1039954_1 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 455.0
YYD1_k127_1039954_2 ornithine cyclodeaminase activity K01750,K18258,K19244 - 1.4.1.1,1.5.1.25,4.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 301.0
YYD1_k127_1039954_3 Chromate resistance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004158 269.0
YYD1_k127_1039954_4 Pyruvate phosphate dikinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008351 280.0
YYD1_k127_1039954_5 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000009075 220.0
YYD1_k127_1039954_6 Flavodoxin-like fold K19784 - - 0.0000000000000000000000000000000000000000000000003606 181.0
YYD1_k127_1039954_7 protein conserved in bacteria - - - 0.000000000001239 70.0
YYD1_k127_1074843_0 Belongs to the TPP enzyme family K01577 - 4.1.1.8 1.112e-231 721.0
YYD1_k127_1074843_1 CoA-transferase family III K07749,K14471,K14472 - 2.8.3.16,2.8.3.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007874 591.0
YYD1_k127_1074843_2 PFAM formyl transferase domain protein K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 450.0
YYD1_k127_1074843_3 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 337.0
YYD1_k127_108277_0 Bifunctional transglycosylase second domain K05365 - 2.4.1.129,3.4.16.4 1.201e-243 770.0
YYD1_k127_108277_1 PFAM MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 303.0
YYD1_k127_108277_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000004355 122.0
YYD1_k127_110834_0 Hydantoinase/oxoprolinase K01469,K01473 - 3.5.2.14,3.5.2.9 1.813e-321 999.0
YYD1_k127_110834_1 Aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 396.0
YYD1_k127_110834_2 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000003487 142.0
YYD1_k127_110834_3 Hydantoinase B/oxoprolinase - - - 0.00000000000000000000000000000000001786 141.0
YYD1_k127_110834_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000374 110.0
YYD1_k127_110834_5 phosphinothricin N-acetyltransferase activity K03825 - - 0.00000000001272 72.0
YYD1_k127_1159168_0 MlrC C-terminus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008852 353.0
YYD1_k127_1159168_1 Hsp70 protein - - - 0.0000000000000000000000000000000000000000000000000000000005157 205.0
YYD1_k127_1159168_2 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.000000000000000000000000000000000000000000006974 167.0
YYD1_k127_1159168_3 Fe-S assembly protein IscX - - - 0.0000000000000000000000000006067 113.0
YYD1_k127_1164738_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1062.0
YYD1_k127_1164738_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008726 602.0
YYD1_k127_1164738_2 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 413.0
YYD1_k127_1164738_3 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 328.0
YYD1_k127_1164738_4 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 306.0
YYD1_k127_1164738_5 DEAD/H associated K03724 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008086 296.0
YYD1_k127_1164738_6 lytic transglycosylase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006664 292.0
YYD1_k127_1164738_7 FtsJ-like methyltransferase K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000001799 220.0
YYD1_k127_1164738_8 glycosyl transferase, family 2 - - - 0.000000000000000000000000001462 118.0
YYD1_k127_1166469_0 transport system fused permease components - - - 0.0 1113.0
YYD1_k127_1166469_1 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 385.0
YYD1_k127_1166469_2 abc transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 315.0
YYD1_k127_1166469_3 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007625 277.0
YYD1_k127_1166469_4 AAA domain - - - 0.000000000000000000000000000000000000000000000000000202 205.0
YYD1_k127_1166469_5 SnoaL-like domain K06893 - - 0.000000000000000000000000000000000000000000002929 171.0
YYD1_k127_1166469_6 NMT1-like family K07080 - - 0.000000000000000000000000000000000000009178 145.0
YYD1_k127_1166469_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000004124 132.0
YYD1_k127_1166469_8 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000001171 51.0
YYD1_k127_1176238_0 Alpha-amylase domain K01187 - 3.2.1.20 7.046e-297 930.0
YYD1_k127_1176238_1 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 6.447e-203 656.0
YYD1_k127_1176238_2 4-alpha-D-((1- 4)-alpha-D-glucano)trehalose trehalohydrolase K00700,K01236 - 2.4.1.18,3.2.1.141 6.458e-201 657.0
YYD1_k127_1176238_3 PFAM Conserved TM helix repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 294.0
YYD1_k127_1184360_0 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0 1409.0
YYD1_k127_1184360_1 protein related to plant photosystem II stability assembly factor - - - 2.995e-203 645.0
YYD1_k127_1184360_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 356.0
YYD1_k127_1184360_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006241 246.0
YYD1_k127_1184360_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000006557 233.0
YYD1_k127_1184360_5 UPF0126 domain - - - 0.00000000000000000000000000000000000000000000000000000001083 205.0
YYD1_k127_1184360_6 ThiS family K03636 - - 0.0000000000000000000000000354 117.0
YYD1_k127_1194492_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 561.0
YYD1_k127_1194492_1 Amidohydrolase K01686 - 4.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000001241 229.0
YYD1_k127_1194492_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000708 178.0
YYD1_k127_1194492_3 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000000004909 144.0
YYD1_k127_1200170_0 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 479.0
YYD1_k127_1200170_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 368.0
YYD1_k127_1205935_0 General secretory system II protein E domain protein K02454,K02652,K12276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 591.0
YYD1_k127_1205935_1 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 359.0
YYD1_k127_1205935_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 345.0
YYD1_k127_1205935_3 (FHA) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 320.0
YYD1_k127_1205935_4 cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 315.0
YYD1_k127_1205935_5 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000001623 184.0
YYD1_k127_1205935_6 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000001785 137.0
YYD1_k127_1205935_7 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000002542 65.0
YYD1_k127_1205935_8 CHASE2 K01768 - 4.6.1.1 0.000001211 56.0
YYD1_k127_1205935_9 Chase2 domain K01768 - 4.6.1.1 0.0002962 43.0
YYD1_k127_1209647_0 Cysteine synthase K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 488.0
YYD1_k127_1209647_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 300.0
YYD1_k127_1209647_2 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001243 284.0
YYD1_k127_1209647_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000003408 152.0
YYD1_k127_1209647_4 Evidence 4 Homologs of previously reported genes of K09700 - - 0.00000000000000000000000000111 118.0
YYD1_k127_1209647_5 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 0.000000000009201 65.0
YYD1_k127_1210546_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 4.531e-274 861.0
YYD1_k127_1210546_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 2.724e-259 807.0
YYD1_k127_1210546_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000001793 140.0
YYD1_k127_1210546_11 ATP synthase I chain K02116 - - 0.00000000000005213 76.0
YYD1_k127_1210546_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 432.0
YYD1_k127_1210546_3 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 409.0
YYD1_k127_1210546_4 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 369.0
YYD1_k127_1210546_5 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 351.0
YYD1_k127_1210546_6 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 342.0
YYD1_k127_1210546_7 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000009625 183.0
YYD1_k127_1210546_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000000000000000000000000000000000000000000000012 177.0
YYD1_k127_1210546_9 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000682 156.0
YYD1_k127_1234194_0 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 - 1.1.1.35 1.52e-205 656.0
YYD1_k127_1234194_1 Periplasmic binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 582.0
YYD1_k127_1234194_2 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 479.0
YYD1_k127_1234194_3 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000459 432.0
YYD1_k127_1234194_4 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 341.0
YYD1_k127_1234194_5 AMP-binding enzyme K20034 - 6.2.1.44 0.000000000000000000000007059 103.0
YYD1_k127_1234194_6 - - - - 0.000002124 57.0
YYD1_k127_1234194_7 ECF sigma factor - - - 0.00001818 50.0
YYD1_k127_1234964_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007535 566.0
YYD1_k127_1234964_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 507.0
YYD1_k127_1234964_2 Protein of unknown function (DUF993) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 499.0
YYD1_k127_1234964_3 Trap-type c4-dicarboxylate transport system, small permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000006805 238.0
YYD1_k127_1234964_4 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000504 214.0
YYD1_k127_1234964_5 Mandelate Racemase Muconate Lactonizing - - - 0.00000000000000000000000000000000000000000000000000001143 192.0
YYD1_k127_1234964_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000001147 169.0
YYD1_k127_1234964_7 TIGRFAM TRAP transporter, DctM subunit - - - 0.00000000000000000000000000000000000222 139.0
YYD1_k127_1241764_0 ABC transporter transmembrane region K18893 - - 4.004e-230 727.0
YYD1_k127_1241764_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006371 338.0
YYD1_k127_1241764_2 membrane protein of uknown function UCP014873 - - - 0.0000000000000005473 85.0
YYD1_k127_1267181_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 447.0
YYD1_k127_1267181_1 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 335.0
YYD1_k127_1267181_2 KR domain K00076,K08081 - 1.1.1.159,1.1.1.206 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 309.0
YYD1_k127_1267181_3 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 304.0
YYD1_k127_1267181_4 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003374 275.0
YYD1_k127_1267181_5 Mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000000000002391 241.0
YYD1_k127_1267181_6 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000002659 141.0
YYD1_k127_1272106_0 amino acid K11959 - - 7.322e-230 716.0
YYD1_k127_1272106_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008486 512.0
YYD1_k127_1272106_2 aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 501.0
YYD1_k127_1272106_3 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 436.0
YYD1_k127_1272106_4 Threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 401.0
YYD1_k127_1272106_5 COG2202 FOG PAS PAC domain - - - 0.0000000000000000000000000000000000000000000000000000002068 207.0
YYD1_k127_1272106_6 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K11712 - - 0.000000000000000000000000000000000000000000000000003344 189.0
YYD1_k127_1272106_7 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000002876 173.0
YYD1_k127_1272106_8 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000003526 117.0
YYD1_k127_1278841_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 3.383e-252 814.0
YYD1_k127_1278841_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 8.761e-239 744.0
YYD1_k127_1278841_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 538.0
YYD1_k127_1278841_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 484.0
YYD1_k127_1278841_4 LysM domain K08086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 404.0
YYD1_k127_1278841_5 Zn-dependent protease with chaperone function K07387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 328.0
YYD1_k127_1278841_6 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009307 292.0
YYD1_k127_1278841_7 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000000001006 246.0
YYD1_k127_1278841_8 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000001262 200.0
YYD1_k127_1312698_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 562.0
YYD1_k127_1312698_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.000000000000000000000000000000000000000000000000003827 184.0
YYD1_k127_1312698_3 Transcriptional regulator - - - 0.0000000000000001001 86.0
YYD1_k127_1328541_0 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 3.103e-215 683.0
YYD1_k127_1328541_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008558 254.0
YYD1_k127_1328541_2 - - - - 0.0000000000000000000000000000000003087 135.0
YYD1_k127_1343165_0 Sodium/calcium exchanger protein K07300 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 441.0
YYD1_k127_1343165_1 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 323.0
YYD1_k127_1343165_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 307.0
YYD1_k127_1343165_3 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000001797 178.0
YYD1_k127_1343165_4 Glycine zipper - - - 0.00000000000000000000000000000000000000000000001864 176.0
YYD1_k127_1343165_5 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0001273 45.0
YYD1_k127_138966_0 Major facilitator Superfamily - - - 0.000000002288 69.0
YYD1_k127_138966_1 Protein of unknown function (DUF1223) - - - 0.000000004713 68.0
YYD1_k127_138966_2 DNA-sulfur modification-associated - - - 0.0005261 52.0
YYD1_k127_1390442_0 ABC-type dipeptide transport system periplasmic component K02035 - - 1.926e-219 691.0
YYD1_k127_1390442_1 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 430.0
YYD1_k127_1390442_2 Twin-arginine translocation pathway signal sequence - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 428.0
YYD1_k127_1390442_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 397.0
YYD1_k127_1390442_4 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005237 373.0
YYD1_k127_1445189_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 7.429e-266 836.0
YYD1_k127_1445189_1 Flavin containing amine oxidoreductase - - - 1.259e-227 717.0
YYD1_k127_1445189_10 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000004448 243.0
YYD1_k127_1445189_11 TPM domain K08988 - - 0.00000000000000000000000000000000000000000000000000547 185.0
YYD1_k127_1445189_12 helix_turn_helix, mercury resistance K19591,K19592 - - 0.0000000000000000000000000000000000000000000000773 173.0
YYD1_k127_1445189_2 Bacterial extracellular solute-binding protein K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 534.0
YYD1_k127_1445189_3 Glycine cleavage T-protein C-terminal barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000759 454.0
YYD1_k127_1445189_4 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K05816,K10111,K10112 - 3.6.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 449.0
YYD1_k127_1445189_5 PFAM binding-protein-dependent transport systems inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 422.0
YYD1_k127_1445189_6 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 412.0
YYD1_k127_1445189_7 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 312.0
YYD1_k127_1445189_8 depolymerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 298.0
YYD1_k127_1445189_9 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 293.0
YYD1_k127_1449947_0 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 596.0
YYD1_k127_1449947_1 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 425.0
YYD1_k127_1449947_2 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 309.0
YYD1_k127_1449947_3 PFAM ribosomal protein L31 K02909 - - 0.000000000000000000000000000002958 122.0
YYD1_k127_1449947_4 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000445 93.0
YYD1_k127_1449947_5 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000005753 52.0
YYD1_k127_1450907_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 4.104e-298 925.0
YYD1_k127_1450907_1 SMART alpha amylase catalytic sub domain K05343 - 3.2.1.1,5.4.99.16 8.576e-248 780.0
YYD1_k127_1450907_2 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 9.959e-241 760.0
YYD1_k127_1450907_3 COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 469.0
YYD1_k127_1450907_4 Belongs to the mandelate racemase muconate lactonizing enzyme family K01684 - 4.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 376.0
YYD1_k127_1450907_5 Hsp33 protein K04083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000264 263.0
YYD1_k127_1450907_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000001772 222.0
YYD1_k127_1450907_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000003737 199.0
YYD1_k127_1450907_8 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000001756 165.0
YYD1_k127_1453602_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 550.0
YYD1_k127_1453602_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 0.000000000000000000000000005263 115.0
YYD1_k127_1453602_2 PFAM VanZ family protein - - - 0.000000000000000000001912 97.0
YYD1_k127_1458926_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 565.0
YYD1_k127_1458926_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 420.0
YYD1_k127_1458926_2 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000000000000000000416 183.0
YYD1_k127_1458926_3 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000005365 105.0
YYD1_k127_1468166_0 Hydantoinase B/oxoprolinase K01469 - 3.5.2.9 0.0 1497.0
YYD1_k127_1468166_1 Protein involved in outer membrane biogenesis - - - 0.0008571 51.0
YYD1_k127_1469968_0 SRP54-type protein, helical bundle domain K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 396.0
YYD1_k127_1469968_1 cell division K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003872 263.0
YYD1_k127_1469968_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000002426 241.0
YYD1_k127_1469968_3 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000272 64.0
YYD1_k127_1469968_4 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000001737 55.0
YYD1_k127_1471981_0 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002377 256.0
YYD1_k127_1471981_1 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003648 243.0
YYD1_k127_1471981_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000004894 194.0
YYD1_k127_1473509_0 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.97e-243 757.0
YYD1_k127_1473509_1 Radical SAM K01012 - 2.8.1.6 2.142e-201 649.0
YYD1_k127_1473509_2 Radical SAM K09711 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 486.0
YYD1_k127_1473509_3 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 450.0
YYD1_k127_1473509_4 FAD dependent oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 396.0
YYD1_k127_1473509_5 geranylgeranyl reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001895 292.0
YYD1_k127_1473509_6 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000135 225.0
YYD1_k127_1473509_7 GMP synthase (glutamine-hydrolyzing) activity - - - 0.000000000000000000000000000000000000000000000000000000000007272 230.0
YYD1_k127_1473509_8 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000000000000000005799 95.0
YYD1_k127_1487186_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 457.0
YYD1_k127_1487186_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007287 346.0
YYD1_k127_1487186_2 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000001438 187.0
YYD1_k127_1487186_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000003059 193.0
YYD1_k127_1487186_4 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000295 192.0
YYD1_k127_1487186_5 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000043 169.0
YYD1_k127_1487186_6 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000001148 153.0
YYD1_k127_1487186_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000006512 132.0
YYD1_k127_1494299_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 4.319e-216 689.0
YYD1_k127_1494299_1 Sugar kinases ribokinase family K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 324.0
YYD1_k127_1494299_2 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002599 262.0
YYD1_k127_1494299_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000001186 218.0
YYD1_k127_1494299_4 Tripartite ATP-independent periplasmic transporter, DctM component K21393 - - 0.0000000000000000000000000000000000000000000000000005089 185.0
YYD1_k127_1494299_5 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.0000000000000000000000000000000000000000000002312 179.0
YYD1_k127_1524930_0 AMP-binding enzyme K01895 - 6.2.1.1 5.277e-197 627.0
YYD1_k127_1524930_1 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 565.0
YYD1_k127_1524930_2 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 358.0
YYD1_k127_1524930_3 Leucyl/phenylalanyl-tRNA protein transferase K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 290.0
YYD1_k127_1524930_4 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004769 269.0
YYD1_k127_1524930_5 plastoquinol--plastocyanin reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002419 259.0
YYD1_k127_1524930_6 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000007238 240.0
YYD1_k127_1524930_7 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.0000000000000000000000000000000000000000000000001228 188.0
YYD1_k127_1524930_8 TIGRFAM YD repeat protein - - - 0.00000000000000000000000001893 123.0
YYD1_k127_1524930_9 Ig-like domain from next to BRCA1 gene - - - 0.000000000001649 79.0
YYD1_k127_1533300_0 Methionine synthase K00548 - 2.1.1.13 7.712e-219 690.0
YYD1_k127_1533300_1 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 4.524e-197 638.0
YYD1_k127_1533300_2 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004715 410.0
YYD1_k127_1533300_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 404.0
YYD1_k127_1533300_4 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006418,GO:0006431,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019752,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000002373 179.0
YYD1_k127_1533300_5 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000000000000000000005427 175.0
YYD1_k127_1542572_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.943e-212 673.0
YYD1_k127_1542572_1 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 606.0
YYD1_k127_1542572_10 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005918 290.0
YYD1_k127_1542572_11 enzyme of heme biosynthesis K02496,K13543 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001325 281.0
YYD1_k127_1542572_12 enzyme of heme biosynthesis K02498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003994 272.0
YYD1_k127_1542572_13 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000002607 249.0
YYD1_k127_1542572_14 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000004244 235.0
YYD1_k127_1542572_15 Polynucleotide kinase 3 phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000000001889 228.0
YYD1_k127_1542572_16 FAD binding domain K03185 - - 0.00000000000000000000000000000000000000000000000000000000005323 217.0
YYD1_k127_1542572_17 synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000002063 199.0
YYD1_k127_1542572_18 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000006015 188.0
YYD1_k127_1542572_19 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000006084 168.0
YYD1_k127_1542572_2 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 604.0
YYD1_k127_1542572_20 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000003132 104.0
YYD1_k127_1542572_21 Belongs to the transcriptional regulatory Fis family K03557 - - 0.0000000000000000000003872 97.0
YYD1_k127_1542572_3 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 565.0
YYD1_k127_1542572_4 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 462.0
YYD1_k127_1542572_5 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006691 443.0
YYD1_k127_1542572_6 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 436.0
YYD1_k127_1542572_7 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 410.0
YYD1_k127_1542572_8 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 373.0
YYD1_k127_1542572_9 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000441 347.0
YYD1_k127_1543163_0 Domain of unknown function (DUF4105) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 409.0
YYD1_k127_1543163_1 Prolyl oligopeptidase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000002205 222.0
YYD1_k127_1543163_2 Protein of unknown function (DUF3015) - - - 0.00000000000000000000000000000000000000000000000001348 184.0
YYD1_k127_1543163_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000004258 113.0
YYD1_k127_154865_0 4Fe-4S dicluster domain - - - 0.0 1178.0
YYD1_k127_154865_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 598.0
YYD1_k127_154865_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000991 293.0
YYD1_k127_154865_3 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000000004807 175.0
YYD1_k127_1549931_0 PFAM Rieske 2Fe-2S domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006017 578.0
YYD1_k127_1549931_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 331.0
YYD1_k127_1549931_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 310.0
YYD1_k127_1549931_3 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001363 246.0
YYD1_k127_1549931_4 PFAM conserved - - - 0.000000000000000000000000000000000000000001078 176.0
YYD1_k127_1549931_5 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM K03519 - 1.2.5.3 0.00000000000000000000001069 104.0
YYD1_k127_1552646_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008472 387.0
YYD1_k127_1552646_1 WYL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 351.0
YYD1_k127_1552646_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001908 282.0
YYD1_k127_1552646_3 PFAM Uncharacterised protein family UPF0150 - - - 0.000000000000000000000001309 105.0
YYD1_k127_1552646_4 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000000000000127 102.0
YYD1_k127_1552646_5 CsbD-like - - - 0.0000000000002782 72.0
YYD1_k127_1565423_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 2395.0
YYD1_k127_1565423_1 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00362 - 1.7.1.15 9.665e-311 986.0
YYD1_k127_1565423_10 - - - - 0.0000000000000000000000000000001168 138.0
YYD1_k127_1565423_11 - - - - 0.0000000000000000000000000003171 119.0
YYD1_k127_1565423_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 9.729e-286 904.0
YYD1_k127_1565423_3 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 499.0
YYD1_k127_1565423_4 ABC transporter K15555,K15578 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 295.0
YYD1_k127_1565423_5 Tetrapyrrole (Corrin/Porphyrin) Methylases K02303 - 2.1.1.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004866 270.0
YYD1_k127_1565423_6 Nitrate ABC transporter inner membrane subunit K15577 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002046 257.0
YYD1_k127_1565423_7 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000003934 240.0
YYD1_k127_1565423_8 Membrane-bound serine protease (ClpP class) K07403 - - 0.0000000000000000000000000000000000000000000002031 172.0
YYD1_k127_1565423_9 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000006925 134.0
YYD1_k127_1566628_0 GAF domain - - - 0.0 1371.0
YYD1_k127_1566628_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004565 283.0
YYD1_k127_1566628_2 helix_turn_helix, Lux Regulon K14979 - - 0.000000000000000000000000000000000000000000000000000000299 217.0
YYD1_k127_1566628_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000001723 141.0
YYD1_k127_1566628_4 Histidine kinase - - - 0.00000000000000000000000000000001636 132.0
YYD1_k127_1566628_5 response regulator, receiver - - - 0.00000000000000000005587 98.0
YYD1_k127_1566628_6 Two component transcriptional regulator, LuxR family - - - 0.0000000000000009321 82.0
YYD1_k127_156713_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 563.0
YYD1_k127_156713_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 301.0
YYD1_k127_156713_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000003509 209.0
YYD1_k127_1570775_0 Indolepyruvate ferredoxin oxidoreductase K00179 - 1.2.7.8 3.656e-301 936.0
YYD1_k127_1570775_1 indolepyruvate ferredoxin oxidoreductase K00179 - 1.2.7.8 0.00000000000000002102 94.0
YYD1_k127_1613455_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1410.0
YYD1_k127_1613455_1 DJ-1/PfpI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007045 279.0
YYD1_k127_1613455_2 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002786 272.0
YYD1_k127_1613455_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000004699 232.0
YYD1_k127_1613455_4 response to abiotic stimulus K06867 - - 0.000000000000000000000000000000000000000000000008452 181.0
YYD1_k127_1613455_5 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000001575 144.0
YYD1_k127_1613455_6 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.0000000000000000000000000000000006923 142.0
YYD1_k127_1613455_7 - - - - 0.000000000000000000002821 97.0
YYD1_k127_1638809_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 4.386e-284 879.0
YYD1_k127_1638809_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.411e-201 636.0
YYD1_k127_1638809_10 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 322.0
YYD1_k127_1638809_11 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 315.0
YYD1_k127_1638809_12 Pyrimidine 5''-nucleotidase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000008263 249.0
YYD1_k127_1638809_13 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000008773 239.0
YYD1_k127_1638809_14 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000001101 228.0
YYD1_k127_1638809_15 oxidase assembly K02258 - - 0.0000000000000000000000000000000000000000000000000000000000000005896 229.0
YYD1_k127_1638809_16 Bacterial regulatory proteins, tetR family K05501 - - 0.000000000000000000000000000000000000000000000000000000000000007847 220.0
YYD1_k127_1638809_17 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000255 224.0
YYD1_k127_1638809_18 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000003239 207.0
YYD1_k127_1638809_19 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000000000001861 189.0
YYD1_k127_1638809_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 602.0
YYD1_k127_1638809_20 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000005013 184.0
YYD1_k127_1638809_21 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000002538 168.0
YYD1_k127_1638809_22 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000005385 166.0
YYD1_k127_1638809_23 signal sequence binding - - - 0.00000000000000000000000000000000000000002165 160.0
YYD1_k127_1638809_24 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000006881 137.0
YYD1_k127_1638809_25 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0000000000000000000000000000004831 124.0
YYD1_k127_1638809_26 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000001691 120.0
YYD1_k127_1638809_27 Integral membrane protein (DUF2244) - - - 0.0000000000000000002174 96.0
YYD1_k127_1638809_28 Protein of unknown function (DUF2909) - - - 0.000006315 55.0
YYD1_k127_1638809_3 Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 460.0
YYD1_k127_1638809_4 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 449.0
YYD1_k127_1638809_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 392.0
YYD1_k127_1638809_6 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 369.0
YYD1_k127_1638809_7 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008728 368.0
YYD1_k127_1638809_8 oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007735 360.0
YYD1_k127_1638809_9 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 346.0
YYD1_k127_1644922_0 PFAM major facilitator superfamily MFS_1 K08151 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 409.0
YYD1_k127_1644922_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 353.0
YYD1_k127_1644922_2 Belongs to the SUA5 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001183 274.0
YYD1_k127_1644922_3 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003417 249.0
YYD1_k127_1644922_4 Peptidase M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000002403 234.0
YYD1_k127_1644922_5 Belongs to the binding-protein-dependent transport system permease family K01997,K01999 - - 0.000000000000000000008664 92.0
YYD1_k127_166133_0 glucose sorbosone K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 530.0
YYD1_k127_166133_1 4,5-dihydroxyphthalate decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 443.0
YYD1_k127_166133_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001349 285.0
YYD1_k127_166133_3 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003478 283.0
YYD1_k127_166133_4 ATP-independent chaperone mediated protein folding - - - 0.00000000000000000005347 96.0
YYD1_k127_166133_5 helix_turn_helix, Lux Regulon - - - 0.0004295 47.0
YYD1_k127_1665216_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 423.0
YYD1_k127_1665216_1 Alpha amylase, catalytic domain K06044 - 5.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 415.0
YYD1_k127_16713_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 1.39e-208 660.0
YYD1_k127_16713_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008584 548.0
YYD1_k127_1679953_0 DNA helicase K03657 - 3.6.4.12 1.69e-252 790.0
YYD1_k127_1679953_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001466 264.0
YYD1_k127_1679953_2 Sporulation related domain - - - 0.000000005694 61.0
YYD1_k127_1701256_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 1166.0
YYD1_k127_1701256_1 glutamate synthase K00266 - 1.4.1.13,1.4.1.14 5.889e-246 768.0
YYD1_k127_1701256_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.142e-219 693.0
YYD1_k127_1701256_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 558.0
YYD1_k127_1701256_4 MgtC family K07507 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001756 274.0
YYD1_k127_1701256_5 Protein of unknown function (DUF2891) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005341 264.0
YYD1_k127_1724306_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 368.0
YYD1_k127_1724306_1 ABC-type histidine transport system, ATPase component K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 285.0
YYD1_k127_1724306_2 Protein of unknown function (DUF938) - - - 0.00000000000000000000000000000000000000000000000000000000000568 216.0
YYD1_k127_1724306_3 Binding-protein-dependent transport system inner membrane component K02029,K10002 - - 0.0000000000000000000000000000000000002769 151.0
YYD1_k127_1724306_4 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000007014 126.0
YYD1_k127_1735919_0 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 590.0
YYD1_k127_1735919_1 protein conserved in bacteria K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 484.0
YYD1_k127_1735919_10 PFAM regulatory protein, MerR - - - 0.0000000000000000000000000000000000000000000000000003658 187.0
YYD1_k127_1735919_11 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000001487 175.0
YYD1_k127_1735919_12 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.00000000000000000000000000000000000002067 147.0
YYD1_k127_1735919_13 dehydrogenase - - - 0.00001795 48.0
YYD1_k127_1735919_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 358.0
YYD1_k127_1735919_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 330.0
YYD1_k127_1735919_4 Lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 308.0
YYD1_k127_1735919_5 Outer membrane protein, OMP85 family K07278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001219 296.0
YYD1_k127_1735919_6 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004376 276.0
YYD1_k127_1735919_7 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005277 272.0
YYD1_k127_1735919_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000002311 264.0
YYD1_k127_1735919_9 peptidase K06194 - - 0.00000000000000000000000000000000000000000000000000000005162 207.0
YYD1_k127_1761769_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1427.0
YYD1_k127_1761769_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 1.461e-266 842.0
YYD1_k127_1761769_10 Domain of unknown function (DUF4442) - - - 0.00000000000000000000000000000000000000000000000001169 191.0
YYD1_k127_1761769_11 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.0000000000000000000000000000000000000000682 156.0
YYD1_k127_1761769_12 Fe-S protein K07140 - - 0.000000000000000000000000000000008364 140.0
YYD1_k127_1761769_13 Ribonuclease K01167 - 3.1.27.3 0.00000000000000000000000000000001046 130.0
YYD1_k127_1761769_14 Regulatory protein, FmdB family - - - 0.0000000000000000000000321 109.0
YYD1_k127_1761769_15 (barnase) inhibitor - - - 0.00000000000000003236 88.0
YYD1_k127_1761769_2 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 417.0
YYD1_k127_1761769_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 369.0
YYD1_k127_1761769_4 Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 303.0
YYD1_k127_1761769_5 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001584 278.0
YYD1_k127_1761769_6 ABC transporter K02471 - - 0.0000000000000000000000000000000000000000000000000000000000002017 216.0
YYD1_k127_1761769_7 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000000000000000432 208.0
YYD1_k127_1761769_8 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000001479 201.0
YYD1_k127_1761769_9 regulatory - - - 0.000000000000000000000000000000000000000000000000000002214 201.0
YYD1_k127_1761853_0 Putative diguanylate phosphodiesterase - - - 1.235e-194 649.0
YYD1_k127_1761853_1 GMC oxidoreductase K00108 - 1.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008419 400.0
YYD1_k127_1761853_2 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000003297 260.0
YYD1_k127_1761853_3 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000003101 229.0
YYD1_k127_1761853_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000004806 126.0
YYD1_k127_1761853_5 COG0457 FOG TPR repeat - - - 0.000000000000000000000000008797 117.0
YYD1_k127_1761853_6 - - - - 0.00000000000000000000000001956 120.0
YYD1_k127_1761853_7 Protein of unknown function (DUF3301) - - - 0.00000000000000000000001456 103.0
YYD1_k127_1764850_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.962e-280 869.0
YYD1_k127_1764850_1 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005283 622.0
YYD1_k127_1764850_2 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006137 343.0
YYD1_k127_1764850_3 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 0.00000000000000000000000000000005214 126.0
YYD1_k127_176710_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 3.594e-206 651.0
YYD1_k127_176710_1 Rod shape-determining protein MreB K03569 - - 6.424e-203 634.0
YYD1_k127_176710_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006503 598.0
YYD1_k127_176710_3 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000001077 242.0
YYD1_k127_176710_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000001854 141.0
YYD1_k127_176710_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000003887 116.0
YYD1_k127_176710_6 - - - - 0.00000000000000000002329 101.0
YYD1_k127_1774861_0 Belongs to the DapA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000879 498.0
YYD1_k127_1774861_1 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 441.0
YYD1_k127_1774861_10 ChrR Cupin-like domain - - - 0.0000000000000000003048 88.0
YYD1_k127_1774861_11 Carbon monoxide dehydrogenase subunit G (CoxG) - - - 0.0000000554 64.0
YYD1_k127_1774861_2 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000794 385.0
YYD1_k127_1774861_3 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009047 368.0
YYD1_k127_1774861_4 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 337.0
YYD1_k127_1774861_5 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000668 307.0
YYD1_k127_1774861_6 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000000000000001639 237.0
YYD1_k127_1774861_7 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000002814 201.0
YYD1_k127_1774861_8 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000436 178.0
YYD1_k127_1774861_9 Methionine synthase vitamin-B12 independent K00549 - 2.1.1.14 0.00000000000000000000000002524 121.0
YYD1_k127_1780963_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1009.0
YYD1_k127_1780963_1 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 2.702e-243 757.0
YYD1_k127_1780963_2 Belongs to the malate synthase family K01638 - 2.3.3.9 1.586e-227 713.0
YYD1_k127_1780963_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 1.091e-215 677.0
YYD1_k127_1780963_4 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 496.0
YYD1_k127_1780963_5 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006668 394.0
YYD1_k127_1780963_6 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009151 332.0
YYD1_k127_1780963_7 alpha beta - - - 0.00000000000000000000000000000000000000000000000000003012 196.0
YYD1_k127_1780963_8 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000001354 183.0
YYD1_k127_1780963_9 Domain of unknown function (DUF4124) - - - 0.000000000000000000000000001159 118.0
YYD1_k127_1783823_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 575.0
YYD1_k127_1783823_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 331.0
YYD1_k127_1783823_2 Permeases of the drug metabolite transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002524 278.0
YYD1_k127_1783823_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.000000000000000000001589 97.0
YYD1_k127_1785574_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1452.0
YYD1_k127_1785574_1 FAD binding domain K20940 - 1.14.13.218 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 458.0
YYD1_k127_1785574_2 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000104 295.0
YYD1_k127_1785574_3 PFAM Haloacid dehalogenase domain protein hydrolase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005625 286.0
YYD1_k127_1785574_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000001433 236.0
YYD1_k127_1785574_5 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000002215 216.0
YYD1_k127_1785574_6 transcriptional regulator K07734 - - 0.00000000000000000000000000000000000000000000000004079 188.0
YYD1_k127_1785574_7 - - - - 0.000000000000000000000000000000000000000000000001294 179.0
YYD1_k127_1785574_8 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000003646 135.0
YYD1_k127_1785574_9 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03321 - - 0.0005787 45.0
YYD1_k127_1794385_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.005e-208 658.0
YYD1_k127_1794385_1 Flavodoxin-like fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001087 258.0
YYD1_k127_1794385_2 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000003619 251.0
YYD1_k127_1794385_3 KR domain K00038 - 1.1.1.53 0.000000000000000000000000002081 111.0
YYD1_k127_1796234_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 365.0
YYD1_k127_1796234_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 357.0
YYD1_k127_1796234_2 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000001154 162.0
YYD1_k127_1798170_0 Carbamoyl-phosphate synthetase ammonia chain K01955 - 6.3.5.5 0.0 1376.0
YYD1_k127_1798170_1 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 443.0
YYD1_k127_1798170_10 A domain family that is part of the cupin metalloenzyme superfamily. - - - 0.000000000000000000006692 106.0
YYD1_k127_1798170_11 phosphoprotein phosphatase activity - - - 0.000000000000000994 90.0
YYD1_k127_1798170_2 ATP-grasp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000572 394.0
YYD1_k127_1798170_3 WbqC-like protein family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000004693 204.0
YYD1_k127_1798170_4 prepilin-type N-terminal cleavage methylation K02456 - - 0.0000000000000000000000000000000000000000000000000000001979 198.0
YYD1_k127_1798170_5 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000269 168.0
YYD1_k127_1798170_6 Right handed beta helix region - - - 0.0000000000000000000000000000000000000003379 162.0
YYD1_k127_1798170_7 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000002789 138.0
YYD1_k127_1798170_8 Type II secretory pathway, pseudopilin - - - 0.0000000000000000000000000000000008971 141.0
YYD1_k127_1798170_9 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000003559 122.0
YYD1_k127_1798385_0 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 4.675e-224 696.0
YYD1_k127_1798385_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000223 109.0
YYD1_k127_1800252_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 613.0
YYD1_k127_1800252_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009938 576.0
YYD1_k127_1800252_10 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000454 204.0
YYD1_k127_1800252_11 PFAM CBS domain containing protein - - - 0.0000000000000000000000000000000000000000000000004653 188.0
YYD1_k127_1800252_12 DoxX family K15977 - - 0.000000000000000000000000000000000000000001022 161.0
YYD1_k127_1800252_13 Cytochrome c K08738 - - 0.00000000000000000000000000000000000002079 151.0
YYD1_k127_1800252_14 Ppx GppA phosphatase - - - 0.000000000000000000000005553 106.0
YYD1_k127_1800252_15 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000004062 107.0
YYD1_k127_1800252_16 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000004006 91.0
YYD1_k127_1800252_17 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.0000000000000001841 86.0
YYD1_k127_1800252_18 Oxidoreductase NAD-binding domain K21832 - - 0.0000000000000003185 87.0
YYD1_k127_1800252_19 Iron-binding zinc finger CDGSH type - - - 0.0000000000004752 73.0
YYD1_k127_1800252_2 PFAM Patatin K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 436.0
YYD1_k127_1800252_20 Protein of unknown function, DUF488 - - - 0.00000000001941 66.0
YYD1_k127_1800252_21 Glycosyl hydrolases family 15 - - - 0.000000001872 64.0
YYD1_k127_1800252_3 dioxygenase K15777 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0046566,GO:0051213,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709 413.0
YYD1_k127_1800252_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 399.0
YYD1_k127_1800252_5 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 368.0
YYD1_k127_1800252_6 NADPH-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 293.0
YYD1_k127_1800252_7 Domain of unknown function (DUF4439) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000153 285.0
YYD1_k127_1800252_8 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001446 253.0
YYD1_k127_1800252_9 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000128 209.0
YYD1_k127_1803668_0 Flavin-binding monooxygenase-like K07222 - - 2.05e-233 734.0
YYD1_k127_1803668_1 peptidase M20 - - - 0.000000000000000000000000000000000000000000000000000007593 192.0
YYD1_k127_1803668_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000001434 114.0
YYD1_k127_1803668_3 GIY-YIG catalytic domain K07461 - - 0.000000000000000000001735 98.0
YYD1_k127_1816897_0 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 503.0
YYD1_k127_1816897_1 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 447.0
YYD1_k127_1816897_2 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 293.0
YYD1_k127_1816897_3 Cation efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002332 238.0
YYD1_k127_1816897_4 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000007229 231.0
YYD1_k127_1816897_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000526 184.0
YYD1_k127_1816897_6 COG2010 Cytochrome c, mono- and diheme variants - - - 0.0002626 45.0
YYD1_k127_1821363_0 Domain of unknown function (DUF3400) - - - 0.0 1701.0
YYD1_k127_1821363_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1090.0
YYD1_k127_1821363_10 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 482.0
YYD1_k127_1821363_11 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 467.0
YYD1_k127_1821363_12 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 447.0
YYD1_k127_1821363_13 COG0524 Sugar kinases, ribokinase family K00856 - 2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009283 424.0
YYD1_k127_1821363_14 PFAM ABC transporter related K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 414.0
YYD1_k127_1821363_15 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003378 381.0
YYD1_k127_1821363_16 Aminotransferase class IV K00824 - 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 356.0
YYD1_k127_1821363_17 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 335.0
YYD1_k127_1821363_18 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 328.0
YYD1_k127_1821363_19 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 314.0
YYD1_k127_1821363_2 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 3.489e-242 753.0
YYD1_k127_1821363_20 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007349 293.0
YYD1_k127_1821363_21 TonB family K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009114 289.0
YYD1_k127_1821363_22 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007092 287.0
YYD1_k127_1821363_23 VanZ like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001385 284.0
YYD1_k127_1821363_24 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001694 268.0
YYD1_k127_1821363_25 PFAM ABC-2 type transporter K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000371 265.0
YYD1_k127_1821363_26 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000004902 265.0
YYD1_k127_1821363_27 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001562 249.0
YYD1_k127_1821363_28 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000162 246.0
YYD1_k127_1821363_29 Alpha beta K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008989 244.0
YYD1_k127_1821363_3 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 1.941e-205 651.0
YYD1_k127_1821363_30 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000001141 248.0
YYD1_k127_1821363_31 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000426 231.0
YYD1_k127_1821363_32 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000001093 237.0
YYD1_k127_1821363_33 Belongs to the methyltransferase superfamily K07444 - - 0.00000000000000000000000000000000000000000000000000000000000009222 221.0
YYD1_k127_1821363_34 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000000000000000000000006436 220.0
YYD1_k127_1821363_35 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000002576 204.0
YYD1_k127_1821363_36 - - - - 0.000000000000000000000000000000000000000000000000000008198 204.0
YYD1_k127_1821363_37 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000000000008536 194.0
YYD1_k127_1821363_38 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000002465 199.0
YYD1_k127_1821363_39 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000000006274 186.0
YYD1_k127_1821363_4 Mur ligase family, catalytic domain K02558 - 6.3.2.45 1.812e-201 638.0
YYD1_k127_1821363_40 Ferredoxin - - - 0.000000000000000000000000000000000000000000000001654 174.0
YYD1_k127_1821363_41 import inner membrane translocase subunit Tim44 - - - 0.0000000000000000000000000000000000000000000001774 180.0
YYD1_k127_1821363_42 Histidine triad (Hit) protein K02503 - - 0.000000000000000000000000000000000000000000007506 168.0
YYD1_k127_1821363_43 - - - - 0.00000000000000000000000000000000000000003216 159.0
YYD1_k127_1821363_44 Redoxin domain protein - - - 0.0000000000000000000000000000000000002256 151.0
YYD1_k127_1821363_45 PFAM Sterol-binding domain protein K03690 - - 0.00000000000000000000000000000003774 133.0
YYD1_k127_1821363_46 Rubredoxin - - - 0.0000000000000000000000000000000588 124.0
YYD1_k127_1821363_47 Uncharacterised protein family (UPF0227) K07000 GO:0003674,GO:0003824,GO:0016787,GO:0016788 - 0.0000000000000000000000000000001084 134.0
YYD1_k127_1821363_48 Protein of unknown function (DUF3426) - - - 0.0000000000000000000000000001301 127.0
YYD1_k127_1821363_49 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000007511 105.0
YYD1_k127_1821363_5 Protein involved in ribonuclease activity and hydrolase activity K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 610.0
YYD1_k127_1821363_50 Protein of unknown function (DUF2782) - - - 0.0000000000000000004134 90.0
YYD1_k127_1821363_51 Belongs to the UPF0250 family K09158 - - 0.000000000002581 72.0
YYD1_k127_1821363_6 Aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 584.0
YYD1_k127_1821363_7 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 582.0
YYD1_k127_1821363_8 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 550.0
YYD1_k127_1821363_9 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006246 508.0
YYD1_k127_1824370_0 Sulfatase - - - 1.695e-243 761.0
YYD1_k127_1824370_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006376 281.0
YYD1_k127_1824370_2 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003576 258.0
YYD1_k127_1824370_3 SelR domain K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000003677 248.0
YYD1_k127_1824370_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000003719 203.0
YYD1_k127_1824370_5 PFAM ABC-1 domain protein K03688 - - 0.00000002278 55.0
YYD1_k127_1836239_0 PFAM binding-protein-dependent transport systems inner membrane component K02050,K15554 - - 0.00000000000000000000000000000000000000000000499 172.0
YYD1_k127_1836239_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000005807 168.0
YYD1_k127_1836239_2 ABC transporter permease K02050 - - 0.000000000000000000000000000000003716 135.0
YYD1_k127_1836239_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000006079 130.0
YYD1_k127_1836239_4 - - - - 0.00000000000000000008186 93.0
YYD1_k127_1836239_5 Belongs to the peptidase S8 family - - - 0.00000008825 55.0
YYD1_k127_1849675_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 596.0
YYD1_k127_1849675_1 Homoaconitate hydratase family protein K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007183 513.0
YYD1_k127_1849675_2 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000299 431.0
YYD1_k127_1849675_3 acetyl-coa acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 348.0
YYD1_k127_1849675_4 flavin adenine dinucleotide binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001198 284.0
YYD1_k127_1849675_5 SnoaL-like domain - - - 0.000000000000000000000000000000000001314 141.0
YYD1_k127_1850191_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007236 281.0
YYD1_k127_1850191_1 cytochrome - - - 0.00000000000000000000000000000000000000000000000000008695 190.0
YYD1_k127_1850191_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000881 77.0
YYD1_k127_1850191_3 Cytochrome C' - - - 0.00000000001037 72.0
YYD1_k127_1853714_0 Acetyl-coenzyme A synthetase N-terminus K01908 - 6.2.1.17 1.61e-290 902.0
YYD1_k127_1853714_1 FAD binding domain K00480 - 1.14.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008888 526.0
YYD1_k127_1853714_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 284.0
YYD1_k127_1853714_3 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000001534 236.0
YYD1_k127_1853714_4 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000001136 210.0
YYD1_k127_1853714_5 Haem-degrading K11477 - - 0.000000000000000000000000000000000009809 143.0
YYD1_k127_1854366_0 regulator of disulfide bond formation K07397 - - 0.000000000000000000000000000000000000000000000000000000000000000503 222.0
YYD1_k127_1854366_1 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000009423 218.0
YYD1_k127_1854366_2 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000000006774 210.0
YYD1_k127_1854366_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000092 77.0
YYD1_k127_1854366_4 - - - - 0.000000000001062 77.0
YYD1_k127_1854366_5 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000005583 59.0
YYD1_k127_1866713_0 type II secretion system protein K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 463.0
YYD1_k127_1866713_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000001173 231.0
YYD1_k127_1866713_2 general secretion pathway protein - - - 0.000000000000000002238 99.0
YYD1_k127_1866713_3 - - - - 0.00000000000000002086 91.0
YYD1_k127_1866713_4 - - - - 0.00000000000002481 82.0
YYD1_k127_1866713_5 Prokaryotic N-terminal methylation motif - - - 0.0000000000179 68.0
YYD1_k127_1873872_0 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 475.0
YYD1_k127_1873872_1 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 409.0
YYD1_k127_1873872_2 pfkB family carbohydrate kinase K21344 - 2.7.1.167 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 365.0
YYD1_k127_1873872_3 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 325.0
YYD1_k127_1873872_4 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.000000000000000000000000000000002604 134.0
YYD1_k127_1874121_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 1.69e-233 731.0
YYD1_k127_1874121_1 Protein of unknown function (DUF1116) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005788 569.0
YYD1_k127_1874121_10 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001204 260.0
YYD1_k127_1874121_11 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.00000000000000000000000000000000000000000000000000000000003456 214.0
YYD1_k127_1874121_12 FR47-like protein - - - 0.0000000000000000000000000000000000000000000000000000000343 205.0
YYD1_k127_1874121_13 Protein of unknown function (DUF2877) - - - 0.0000000000000000000000000000000003642 141.0
YYD1_k127_1874121_14 membrane - - - 0.00000000000000000000000000004459 121.0
YYD1_k127_1874121_15 Protein of unknown function (DUF1232) - - - 0.00000000000000000000000008473 115.0
YYD1_k127_1874121_16 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000002795 120.0
YYD1_k127_1874121_2 FAD binding domain K00481 - 1.14.13.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 563.0
YYD1_k127_1874121_3 Soluble lytic murein transglycosylase L domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000932 565.0
YYD1_k127_1874121_4 COG1680 Beta-lactamase class C and other penicillin binding proteins K01286,K08641 - 3.4.13.22,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 520.0
YYD1_k127_1874121_5 TIGRFAM phosphate binding protein K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 497.0
YYD1_k127_1874121_6 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K00830,K00839 - 2.6.1.112,2.6.1.44,2.6.1.45,2.6.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 465.0
YYD1_k127_1874121_7 CoA binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 457.0
YYD1_k127_1874121_8 epimerase dehydratase K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 313.0
YYD1_k127_1874121_9 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001132 290.0
YYD1_k127_1908242_0 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 419.0
YYD1_k127_1908242_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000002219 257.0
YYD1_k127_1908242_2 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000000000000000000000009383 178.0
YYD1_k127_1908242_3 Cobalamin-independent synthase, Catalytic domain K00549,K22363 - 2.1.1.14,4.4.1.23 0.000000000003955 68.0
YYD1_k127_1914664_0 DNA segregation ATPase FtsK SpoIIIE K03466 - - 1.762e-294 922.0
YYD1_k127_1914664_1 DNA replication, recombination, and repair K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 593.0
YYD1_k127_1914664_10 Transcriptional regulator crp fnr family K10914 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 255.0
YYD1_k127_1914664_11 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000006235 250.0
YYD1_k127_1914664_12 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000000000000000000000000000000000001055 221.0
YYD1_k127_1914664_13 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.000000000000000000000000000000000000000000000000000000000001153 221.0
YYD1_k127_1914664_14 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000000000000001036 201.0
YYD1_k127_1914664_15 Protein of unknown function (DUF3025) - - - 0.00000000000000000000000000000000000000000000000003644 193.0
YYD1_k127_1914664_16 Small MutS-related domain - - - 0.0000000000000000000000000000000000000000002611 164.0
YYD1_k127_1914664_17 BON domain - - - 0.00000000000000000000000000000000000000001002 168.0
YYD1_k127_1914664_18 FAD binding domain - - - 0.0000000000000000000000000000000008321 134.0
YYD1_k127_1914664_19 HIRAN - - - 0.00000000000000000000000000000002811 134.0
YYD1_k127_1914664_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 519.0
YYD1_k127_1914664_20 Tetratricopeptide repeat - - - 0.0000000000000000000000000003431 123.0
YYD1_k127_1914664_21 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000021 113.0
YYD1_k127_1914664_22 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000009808 107.0
YYD1_k127_1914664_23 - - - - 0.000000000000000001988 93.0
YYD1_k127_1914664_24 - - - - 0.0005298 45.0
YYD1_k127_1914664_3 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 490.0
YYD1_k127_1914664_4 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 488.0
YYD1_k127_1914664_5 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 488.0
YYD1_k127_1914664_6 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 420.0
YYD1_k127_1914664_7 PFAM Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 337.0
YYD1_k127_1914664_8 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 299.0
YYD1_k127_1914664_9 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000151 263.0
YYD1_k127_1953244_0 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 9.6e-220 691.0
YYD1_k127_1953244_1 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005157 413.0
YYD1_k127_1953244_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 413.0
YYD1_k127_1953244_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000005288 201.0
YYD1_k127_1986378_0 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 0.0 1491.0
YYD1_k127_1986378_1 nitrite transporter K02575 - - 4.822e-260 804.0
YYD1_k127_202215_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 366.0
YYD1_k127_202215_1 Amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 363.0
YYD1_k127_202215_2 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000001062 252.0
YYD1_k127_202215_3 Sir2 family K12410 - - 0.000000000000000000000000000000000000000000000000000000000000006306 230.0
YYD1_k127_202215_4 proline dipeptidase activity K01262 - 3.4.11.9 0.000000000000000000000000000000000000000002894 163.0
YYD1_k127_202215_5 - - - - 0.000000000000000000000000000000002791 132.0
YYD1_k127_2023359_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 507.0
YYD1_k127_2023359_1 endoribonuclease - - - 0.0000000000000001174 83.0
YYD1_k127_2023359_2 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.00000001873 58.0
YYD1_k127_2031833_0 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 558.0
YYD1_k127_2031833_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002761 504.0
YYD1_k127_2031833_2 pfkB family carbohydrate kinase K21344 - 2.7.1.167 0.000000000000000000003404 108.0
YYD1_k127_2035234_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 7.475e-220 707.0
YYD1_k127_2035234_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 456.0
YYD1_k127_2035234_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000002684 196.0
YYD1_k127_2035234_3 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000001788 119.0
YYD1_k127_2035234_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000005271 90.0
YYD1_k127_2035735_0 tRNA processing - - - 3.123e-201 631.0
YYD1_k127_2035735_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 352.0
YYD1_k127_2035735_2 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 299.0
YYD1_k127_2035735_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000007549 232.0
YYD1_k127_2035735_4 Cytidylyltransferase K07257 - - 0.000000000000004083 76.0
YYD1_k127_2035735_5 Spore coat polysaccharide biosynthesis protein - - - 0.00004131 49.0
YYD1_k127_2047417_0 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002507 477.0
YYD1_k127_2047417_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999,K11959 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 456.0
YYD1_k127_2047417_10 - - - - 0.0000000000000000006948 92.0
YYD1_k127_2047417_11 bacterial OsmY and nodulation domain K04065 - - 0.00000000000007295 79.0
YYD1_k127_2047417_12 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000001056 72.0
YYD1_k127_2047417_13 Protein of unknown function (DUF1328) - - - 0.0000000000001888 71.0
YYD1_k127_2047417_14 Periplasmic or secreted lipoprotein K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.000105 52.0
YYD1_k127_2047417_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000674 432.0
YYD1_k127_2047417_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 307.0
YYD1_k127_2047417_4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000005792 172.0
YYD1_k127_2047417_5 Domain of unknown function (DUF4383) - - - 0.0000000000000000000000000000000000000007963 156.0
YYD1_k127_2047417_6 Domain of unknown function (DUF4383) - - - 0.000000000000000000000000000000000002225 144.0
YYD1_k127_2047417_7 Diguanylate cyclase - - - 0.000000000000000000000000000001109 129.0
YYD1_k127_2047417_8 - - - - 0.000000000000000000000000003271 111.0
YYD1_k127_2047417_9 CsbD-like - - - 0.00000000000000000000000001984 109.0
YYD1_k127_2053975_0 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 563.0
YYD1_k127_2053975_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 414.0
YYD1_k127_2053975_10 Protein of unknown function (DUF3237) - - - 0.0000000000000000000000000000000000000000000000007206 183.0
YYD1_k127_2053975_11 carbon monoxide dehydrogenase K09386 - - 0.000000000000000000000000000000000000000000000001617 180.0
YYD1_k127_2053975_12 Belongs to the UPF0307 family K09889 - - 0.000000000000000000000000000000000000005149 151.0
YYD1_k127_2053975_13 but contains a N-term CheY-like response regulator receiver domain and C-term adenylyl guanylyl cyclase catalytic domain - - - 0.0000000000001325 79.0
YYD1_k127_2053975_2 VWA domain containing CoxE-like protein K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 337.0
YYD1_k127_2053975_3 molybdenum cofactor K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 289.0
YYD1_k127_2053975_4 Threonyl and Alanyl tRNA synthetase second additional domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002298 258.0
YYD1_k127_2053975_5 Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002782 258.0
YYD1_k127_2053975_6 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000001265 241.0
YYD1_k127_2053975_7 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000921 237.0
YYD1_k127_2053975_8 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000008985 195.0
YYD1_k127_2053975_9 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000004884 180.0
YYD1_k127_2056127_0 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 523.0
YYD1_k127_2056127_1 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 507.0
YYD1_k127_2056127_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009346 299.0
YYD1_k127_2056127_3 haloacid dehalogenase-like hydrolase - - - 0.0000000000000001787 80.0
YYD1_k127_2056127_4 SMART Transport-associated and nodulation region K04065 - - 0.00000004844 62.0
YYD1_k127_2056127_5 EF hand - - - 0.000402 50.0
YYD1_k127_2059017_0 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 492.0
YYD1_k127_2059017_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001096 274.0
YYD1_k127_2059017_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000001922 89.0
YYD1_k127_2068457_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1259.0
YYD1_k127_2068457_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 552.0
YYD1_k127_2068457_2 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 522.0
YYD1_k127_2068457_3 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 417.0
YYD1_k127_2068457_4 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003971 394.0
YYD1_k127_2068457_5 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 294.0
YYD1_k127_2068457_6 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000004036 189.0
YYD1_k127_2068457_7 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000001503 188.0
YYD1_k127_2068457_8 OmpA family K03286 - - 0.0000000000000000000000000004461 121.0
YYD1_k127_2071056_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 1.177e-195 621.0
YYD1_k127_2071056_1 LytTr DNA-binding domain K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001225 281.0
YYD1_k127_2071056_2 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000001098 260.0
YYD1_k127_2072864_0 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 589.0
YYD1_k127_2072864_1 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452 488.0
YYD1_k127_2072864_2 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 402.0
YYD1_k127_2072864_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000006544 126.0
YYD1_k127_2072864_4 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02054 - - 0.0000000000007521 78.0
YYD1_k127_2076625_0 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 519.0
YYD1_k127_2076625_1 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.000000000000000000000000000000000000000005076 156.0
YYD1_k127_2076625_2 PFAM Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000001708 149.0
YYD1_k127_2076625_3 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000002945 57.0
YYD1_k127_2082454_0 Rieske [2Fe-2S] domain - - - 5.881e-202 636.0
YYD1_k127_2082454_1 glutamine synthetase K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 617.0
YYD1_k127_2082454_10 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000001316 179.0
YYD1_k127_2082454_11 glycosyl transferase, family 2 - - - 0.000000000000000008313 88.0
YYD1_k127_2082454_12 PAS domain - - - 0.0000002897 59.0
YYD1_k127_2082454_2 Aldo/keto reductase family K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 438.0
YYD1_k127_2082454_3 Cupin domain K00450 - 1.13.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007064 410.0
YYD1_k127_2082454_4 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 409.0
YYD1_k127_2082454_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 357.0
YYD1_k127_2082454_6 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008405 321.0
YYD1_k127_2082454_7 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 314.0
YYD1_k127_2082454_8 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 302.0
YYD1_k127_2082454_9 PFAM ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000001539 242.0
YYD1_k127_2085399_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 9.902e-251 793.0
YYD1_k127_2085399_1 PFAM Amylo-alpha-16-glucosidase - - - 2.816e-245 777.0
YYD1_k127_2085399_10 LysR substrate binding domain - - - 0.00000000000000000000000000000000000006281 154.0
YYD1_k127_2085399_11 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.000000000000000000000000000000000001603 139.0
YYD1_k127_2085399_12 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000006425 138.0
YYD1_k127_2085399_13 Tetratricopeptide repeat - - - 0.0000000000000000000000000501 121.0
YYD1_k127_2085399_14 ABC transporter - - - 0.0000000000000000006033 100.0
YYD1_k127_2085399_15 Domain of unknown function (DUF4184) - - - 0.0000000000000001472 91.0
YYD1_k127_2085399_16 - - - - 0.000000000000001437 80.0
YYD1_k127_2085399_17 protein ubiquitination - - - 0.0000003276 59.0
YYD1_k127_2085399_18 Immunity protein 32 - - - 0.000001046 54.0
YYD1_k127_2085399_19 Virulence factor Mce family protein K02067 - - 0.0004037 52.0
YYD1_k127_2085399_2 PFAM glycosyl transferase group 1 K12995 - 2.4.1.348 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 458.0
YYD1_k127_2085399_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 366.0
YYD1_k127_2085399_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 344.0
YYD1_k127_2085399_5 phosphoribosylamine-glycine ligase activity K01945,K01955 - 6.3.4.13,6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 290.0
YYD1_k127_2085399_6 Methyltransferase type 11 K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000000000000000004314 221.0
YYD1_k127_2085399_7 SMART cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000000000000007675 219.0
YYD1_k127_2085399_8 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000006811 170.0
YYD1_k127_2085399_9 Cold shock K03704 - - 0.00000000000000000000000000000000000000002496 164.0
YYD1_k127_2103069_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 328.0
YYD1_k127_2103069_1 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.0000000000000000000000000000000000000000000000000000000000000000006779 235.0
YYD1_k127_2103069_2 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000001396 225.0
YYD1_k127_2103069_3 transcriptional regulator K07734 - - 0.000000000000000000000000000000000000000000000000000000002989 207.0
YYD1_k127_2103069_4 Oxidative deamination of D-amino acids K00285 - 1.4.5.1 0.000000000004357 76.0
YYD1_k127_2128802_0 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001648 266.0
YYD1_k127_2128802_1 Domain of unknown function DUF108 K06989 - 1.4.1.21 0.000000000000000000000000000000000000000000000000000000000000002983 228.0
YYD1_k127_2128802_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000001987 81.0
YYD1_k127_2128802_3 transcriptional regulator - - - 0.0000000000000000357 82.0
YYD1_k127_2133238_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 590.0
YYD1_k127_2133238_1 FAD binding domain K20940 - 1.14.13.218 0.000000000000000000000000000000000000000001687 157.0
YYD1_k127_2135659_0 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 521.0
YYD1_k127_2135659_1 TOBE domain K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 513.0
YYD1_k127_2135659_2 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 443.0
YYD1_k127_2135659_3 Binding-protein-dependent transport system inner membrane component K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 393.0
YYD1_k127_2159182_0 Required for chromosome condensation and partitioning K03529 - - 2.231e-195 634.0
YYD1_k127_2159182_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 530.0
YYD1_k127_2159182_10 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071944 - 0.00003926 48.0
YYD1_k127_2159182_11 - - - - 0.0000879 45.0
YYD1_k127_2159182_2 PFAM aminotransferase class I and II K14267 - 2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 475.0
YYD1_k127_2159182_3 Type II/IV secretion system protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005923 464.0
YYD1_k127_2159182_4 Belongs to the transferase hexapeptide repeat family K00674 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008666,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 396.0
YYD1_k127_2159182_5 Belongs to the protein N5-glutamine methyltransferase family K07320 - 2.1.1.298 0.000000000000000000000000000000000000000000000000000000000000000000000002246 263.0
YYD1_k127_2159182_6 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000001682 232.0
YYD1_k127_2159182_7 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016651,GO:0016657,GO:0018130,GO:0019438,GO:0033739,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000009573 203.0
YYD1_k127_2159182_8 PFAM CHAD domain containing protein - - - 0.00000000000000000000000004455 119.0
YYD1_k127_2159182_9 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.00000000001409 65.0
YYD1_k127_2175382_0 Fumarate reductase flavoprotein C-term - - - 5.899e-227 713.0
YYD1_k127_2175382_1 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 338.0
YYD1_k127_2175382_2 Fumarate reductase subunit C - - - 0.00000000000000000000000001139 118.0
YYD1_k127_2175382_3 ubiE/COQ5 methyltransferase family K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000009383 98.0
YYD1_k127_2175382_4 Fumarate reductase subunit D - - - 0.00000000000000009155 89.0
YYD1_k127_2179234_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 4.751e-250 791.0
YYD1_k127_2179234_1 Rod shape-determining protein MreB K03569 - - 1.054e-200 631.0
YYD1_k127_2179234_2 Isocitrate lyase K01637 - 4.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006005 533.0
YYD1_k127_2179234_3 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 477.0
YYD1_k127_2179234_4 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 288.0
YYD1_k127_2179234_5 rod shape-determining protein MreD K03571 - - 0.000000000000000000000000000000000000000002782 161.0
YYD1_k127_2179234_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000001965 85.0
YYD1_k127_2181177_0 Mo-co oxidoreductase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 398.0
YYD1_k127_2181177_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006215 293.0
YYD1_k127_2181177_2 Aminotransferase class I and II K14155 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000002759 221.0
YYD1_k127_2181177_3 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000004262 166.0
YYD1_k127_2181177_4 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000006149 164.0
YYD1_k127_2181177_5 Mannose-6-phosphate isomerase - - - 0.00000000000000002034 85.0
YYD1_k127_2241004_0 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009026 436.0
YYD1_k127_2241004_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 344.0
YYD1_k127_2241004_2 Peptidase family M28 K02083 - 3.5.3.9 0.000000000000000000000000000000000000000000000008498 174.0
YYD1_k127_2241004_3 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000002414 164.0
YYD1_k127_2241004_4 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.000000000000000000000000000000000000002961 150.0
YYD1_k127_2241004_5 Polysaccharide deacetylase K00365,K01452 GO:0000003,GO:0000272,GO:0003006,GO:0005575,GO:0005618,GO:0005619,GO:0005623,GO:0005631,GO:0005975,GO:0005976,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006037,GO:0006039,GO:0006040,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009272,GO:0009277,GO:0009653,GO:0009987,GO:0010383,GO:0010927,GO:0016043,GO:0016052,GO:0016998,GO:0017144,GO:0019953,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030437,GO:0030476,GO:0031160,GO:0031505,GO:0032502,GO:0032505,GO:0032989,GO:0034218,GO:0034232,GO:0034293,GO:0042244,GO:0042546,GO:0042737,GO:0043170,GO:0043934,GO:0043935,GO:0044036,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044277,GO:0044426,GO:0044462,GO:0044464,GO:0044703,GO:0045229,GO:0046348,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051321,GO:0051704,GO:0070590,GO:0070591,GO:0070726,GO:0070910,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071853,GO:0071854,GO:0071940,GO:0071944,GO:0071966,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903046 1.7.3.3,3.5.1.41 0.0000000000000000000000000000000000005833 151.0
YYD1_k127_2241004_6 HIUase/Transthyretin family - - - 0.0000000000000000000000000000000002583 135.0
YYD1_k127_2289904_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1013.0
YYD1_k127_2289904_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 513.0
YYD1_k127_2289904_10 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.00000000004885 65.0
YYD1_k127_2289904_2 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 470.0
YYD1_k127_2289904_3 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 455.0
YYD1_k127_2289904_4 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 393.0
YYD1_k127_2289904_5 RecA-superfamily ATPases implicated in signal transduction K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006958 315.0
YYD1_k127_2289904_6 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 295.0
YYD1_k127_2289904_7 Bacterial periplasmic substrate-binding proteins K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001277 266.0
YYD1_k127_2289904_8 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000002025 201.0
YYD1_k127_2289904_9 (Lipo)protein - - - 0.00000000000004949 78.0
YYD1_k127_2314292_0 4-Hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 552.0
YYD1_k127_2314292_1 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005702 440.0
YYD1_k127_2314292_2 PFAM aromatic amino acid K00500 - 1.14.16.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004753 362.0
YYD1_k127_2314292_3 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004919 348.0
YYD1_k127_2314292_4 COG1943 Transposase and inactivated derivatives K07491 - - 0.00000000000000000000000000000000000000000000000000002119 197.0
YYD1_k127_2314292_5 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000001025 163.0
YYD1_k127_2314292_6 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000036 72.0
YYD1_k127_2314292_7 PFAM General secretory system II protein E domain protein K11740 - - 0.0000003846 60.0
YYD1_k127_2328639_0 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007849 533.0
YYD1_k127_2328639_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 309.0
YYD1_k127_2328639_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000148 216.0
YYD1_k127_2328639_3 Protein of unknown function (DUF1161) - - - 0.0000000000000003571 81.0
YYD1_k127_233707_0 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 497.0
YYD1_k127_233707_1 Cobalamin-independent synthase, Catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008619 478.0
YYD1_k127_233707_2 Belongs to the HpcH HpaI aldolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 294.0
YYD1_k127_233707_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 295.0
YYD1_k127_233707_4 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 305.0
YYD1_k127_233707_5 Amidohydrolase K18982 - 5.4.1.4 0.0000000000000000000000000000000000000000005811 173.0
YYD1_k127_233707_6 amine dehydrogenase activity - - - 0.0000000000000000000000000000006329 124.0
YYD1_k127_236056_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 353.0
YYD1_k127_236056_1 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000001794 236.0
YYD1_k127_236056_2 Helix-turn-helix XRE-family like proteins K18831 - - 0.000000000000000000000000000000000000000000000000001484 185.0
YYD1_k127_236056_3 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system K19166 - - 0.000000000000000000000000000000000000004508 147.0
YYD1_k127_236056_4 PIN domain - - - 0.00000000000000000000000000003423 125.0
YYD1_k127_236056_5 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000208 108.0
YYD1_k127_236056_6 Helix-turn-helix domain - - - 0.00000000000000000001405 94.0
YYD1_k127_236056_7 Protein of unknown function (DUF2283) - - - 0.00000000000000009077 83.0
YYD1_k127_2370873_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003293 486.0
YYD1_k127_2370873_1 HMGL-like K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003143 447.0
YYD1_k127_2370873_10 Protein-S-isoprenylcysteine methyltransferase - - - 0.000000000000000000000000000000000000000000000000004594 184.0
YYD1_k127_2370873_11 protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.0000000000000000000000000000000000001076 149.0
YYD1_k127_2370873_12 Auxin binding protein - - - 0.0000000000000000000000000000000000009626 143.0
YYD1_k127_2370873_13 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000002402 134.0
YYD1_k127_2370873_2 III protein, CoA-transferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 427.0
YYD1_k127_2370873_3 dienelactone hydrolase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000459 350.0
YYD1_k127_2370873_4 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 356.0
YYD1_k127_2370873_5 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 342.0
YYD1_k127_2370873_6 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001518 280.0
YYD1_k127_2370873_7 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000002056 265.0
YYD1_k127_2370873_8 4,5-dihydroxyphthalate decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005653 255.0
YYD1_k127_2370873_9 protocatechuate 3,4-dioxygenase, beta subunit K00449 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000287 207.0
YYD1_k127_2373218_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11745,K11747 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 516.0
YYD1_k127_2373218_1 FAD binding domain K09828 - 1.3.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 452.0
YYD1_k127_2373218_2 Domain of unknown function (DUF1993) K09983 - - 0.000000000000000000000000000000000000000000000000000000000001224 214.0
YYD1_k127_2373218_3 ABC transporter, phosphonate, periplasmic substrate-binding protein K02051 - - 0.00000000000000000000000000000000000000004393 157.0
YYD1_k127_2373218_4 - - - - 0.00000000000000000000000000000000000002114 156.0
YYD1_k127_2373218_5 - - - - 0.0000000000000000000000000944 111.0
YYD1_k127_2373218_6 - - - - 0.00000000000001225 81.0
YYD1_k127_2373218_7 Bacterial protein of unknown function (DUF883) - GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0043021,GO:0043024,GO:0044464,GO:0044877,GO:0060187,GO:0071944 - 0.00000001334 62.0
YYD1_k127_2384942_0 Formate dehydrogenase, alpha subunit K00123,K22015 - 1.17.1.9,1.17.99.7 4.48e-314 970.0
YYD1_k127_2384942_1 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 1.658e-286 888.0
YYD1_k127_2384942_2 Belongs to the universal stress protein A family - - - 0.000000000000000000000006283 106.0
YYD1_k127_2384942_3 membrane protein, terc - - - 0.00000000000000000001129 93.0
YYD1_k127_2393829_0 PFAM AsmA family protein K07289,K07290 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007834 442.0
YYD1_k127_2393829_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000004035 102.0
YYD1_k127_24092_0 Carbamoyltransferase K00612 - - 2.153e-273 853.0
YYD1_k127_24092_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 418.0
YYD1_k127_24092_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009868 294.0
YYD1_k127_24092_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000005704 226.0
YYD1_k127_24092_4 - - - - 0.0000000000000000000000000000000003655 141.0
YYD1_k127_24092_5 - - - - 0.000000000000001424 77.0
YYD1_k127_24092_6 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000008988 73.0
YYD1_k127_2413917_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 1.361e-212 681.0
YYD1_k127_2413917_1 ribosomal rna small subunit methyltransferase - - - 2.347e-198 632.0
YYD1_k127_2413917_10 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 381.0
YYD1_k127_2413917_11 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 321.0
YYD1_k127_2413917_12 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 319.0
YYD1_k127_2413917_13 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 309.0
YYD1_k127_2413917_14 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 307.0
YYD1_k127_2413917_15 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005163 293.0
YYD1_k127_2413917_16 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000003257 272.0
YYD1_k127_2413917_17 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003354 263.0
YYD1_k127_2413917_18 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000002245 214.0
YYD1_k127_2413917_19 Cobalamin synthesis protein cobW C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000005746 212.0
YYD1_k127_2413917_2 cysteine synthase K01697 - 4.2.1.22 7.739e-195 618.0
YYD1_k127_2413917_20 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000000004724 201.0
YYD1_k127_2413917_21 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000008805 176.0
YYD1_k127_2413917_22 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000000000000000000000000002542 154.0
YYD1_k127_2413917_23 MarR family - - - 0.000000000000000000000000000000006961 134.0
YYD1_k127_2413917_24 Thioesterase - - - 0.000000000000000000000000000000197 126.0
YYD1_k127_2413917_25 - - - - 0.0000000000002778 72.0
YYD1_k127_2413917_26 ChrR Cupin-like domain - - - 0.000000000005535 76.0
YYD1_k127_2413917_27 Protein of unknown function (DUF2846) - - - 0.000007195 53.0
YYD1_k127_2413917_28 TonB C terminal K03646 - - 0.000009714 56.0
YYD1_k127_2413917_3 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005302 616.0
YYD1_k127_2413917_4 4-hydroxyphenylacetate 3-hydroxylase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 589.0
YYD1_k127_2413917_5 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006935 559.0
YYD1_k127_2413917_6 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01758 - 4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 558.0
YYD1_k127_2413917_7 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 534.0
YYD1_k127_2413917_8 PFAM EAL domain, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 490.0
YYD1_k127_2413917_9 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 395.0
YYD1_k127_2447040_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 2.338e-268 839.0
YYD1_k127_2477555_0 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 556.0
YYD1_k127_2477555_1 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008313 465.0
YYD1_k127_2477555_10 short-chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000000002862 178.0
YYD1_k127_2477555_11 RDD family - - - 0.00000000000000000000000000000001105 131.0
YYD1_k127_2477555_12 protein possibly involved in aromatic compounds catabolism - - - 0.00000000000000000001313 103.0
YYD1_k127_2477555_13 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) - - - 0.0000000000000000007377 99.0
YYD1_k127_2477555_14 Copper homeostasis K06079 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0010810,GO:0016020,GO:0019867,GO:0030155,GO:0030312,GO:0030313,GO:0031975,GO:0042802,GO:0044462,GO:0044464,GO:0050789,GO:0065007,GO:0071944 - 0.000124 51.0
YYD1_k127_2477555_2 N-terminal domain of oxidoreductase K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006037 404.0
YYD1_k127_2477555_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007984 325.0
YYD1_k127_2477555_4 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 317.0
YYD1_k127_2477555_5 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 295.0
YYD1_k127_2477555_6 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 299.0
YYD1_k127_2477555_7 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002297 263.0
YYD1_k127_2477555_8 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000007509 220.0
YYD1_k127_2477555_9 - - - - 0.00000000000000000000000000000000000000000000000000000005711 206.0
YYD1_k127_2482209_0 His Kinase A (phospho-acceptor) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003693 359.0
YYD1_k127_2482209_1 response regulator K07715 - - 0.00000000000000000000000000000000000000000000000000000000000006243 218.0
YYD1_k127_2482209_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000001452 138.0
YYD1_k127_2482209_3 AAA domain K08252,K16692 - 2.7.10.1 0.00000000000000000000001588 110.0
YYD1_k127_2482209_4 Serine acetyltransferase K00640 - 2.3.1.30 0.0000000000003177 82.0
YYD1_k127_2487454_0 FAD dependent oxidoreductase - - - 2.019e-206 651.0
YYD1_k127_2487454_1 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K11747 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008324 548.0
YYD1_k127_2487454_10 Chemotaxis sensory transducer K03406 - - 0.0001344 46.0
YYD1_k127_2487454_2 Polysaccharide pyruvyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 491.0
YYD1_k127_2487454_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 386.0
YYD1_k127_2487454_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008659 297.0
YYD1_k127_2487454_5 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000007022 243.0
YYD1_k127_2487454_6 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000000001545 205.0
YYD1_k127_2487454_7 Flavin reductase like domain - - - 0.00000000000000000000000000001236 135.0
YYD1_k127_2487454_8 - - - - 0.0000000000000006895 81.0
YYD1_k127_2487454_9 Major Facilitator Superfamily - - - 0.000000000001014 79.0
YYD1_k127_2495724_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 572.0
YYD1_k127_2495724_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 450.0
YYD1_k127_2495724_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000003038 198.0
YYD1_k127_2495724_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000008369 57.0
YYD1_k127_2505385_0 general secretion pathway protein D K02453 - - 0.0000000000000000000000000000000000000000000000000000000000004025 217.0
YYD1_k127_2505385_1 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000001975 202.0
YYD1_k127_2505385_2 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000002955 180.0
YYD1_k127_2505385_3 PFAM General secretion pathway protein K K02460 - - 0.00000000000000000000000000000000000000000000002306 187.0
YYD1_k127_2505385_4 Type II secretion system (T2SS), protein N K02463 - - 0.0000000000000000000000000000000000001537 152.0
YYD1_k127_2505385_5 General secretion pathway protein I K02458 - - 0.000000000000000000000000004709 121.0
YYD1_k127_2505385_6 general secretion pathway protein K02452 - - 0.0000000000000008701 85.0
YYD1_k127_2505385_7 GspL periplasmic domain K02461 - - 0.000000000000001315 91.0
YYD1_k127_2505385_8 PFAM General secretion pathway, M protein K02462 - - 0.00000004451 64.0
YYD1_k127_2505385_9 general secretion pathway protein K02459 - - 0.0004539 51.0
YYD1_k127_2517807_0 COG0438 Glycosyltransferase - - - 0.0000000000000000000000000000000000000000002058 173.0
YYD1_k127_2517807_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000003746 164.0
YYD1_k127_2517807_2 glycosyl transferase - - - 0.0000000000000005216 78.0
YYD1_k127_2517807_3 GDSL-like Lipase/Acylhydrolase - - - 0.000003749 59.0
YYD1_k127_2523416_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 381.0
YYD1_k127_2523416_1 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 367.0
YYD1_k127_2523416_2 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 326.0
YYD1_k127_2523416_3 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 304.0
YYD1_k127_2523416_4 PFAM binding-protein-dependent transport systems inner membrane component K05773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 291.0
YYD1_k127_2523416_5 Chromate resistance exported protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000201 276.0
YYD1_k127_2523416_6 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009311 276.0
YYD1_k127_2523416_7 Transcriptional regulator of molybdate metabolism, LysR family protein - - - 0.00000000000000000000000000000000000000000000000000000000000002442 227.0
YYD1_k127_2523416_8 ABC transporter K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000119 216.0
YYD1_k127_2523416_9 Chromate K07240 - - 0.0000000000000000000000000000000000000000000003361 168.0
YYD1_k127_25435_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 312.0
YYD1_k127_25435_1 Inosine-uridine preferring nucleoside hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003784 277.0
YYD1_k127_25435_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000007951 237.0
YYD1_k127_25435_3 PhoQ Sensor - - - 0.000000000001434 78.0
YYD1_k127_2555660_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 567.0
YYD1_k127_2555660_1 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 500.0
YYD1_k127_2555660_2 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003229 466.0
YYD1_k127_2555660_3 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 362.0
YYD1_k127_2555660_4 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 304.0
YYD1_k127_2555660_5 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000000000000000002248 184.0
YYD1_k127_2555660_6 protein involved in tolerance to divalent cations K03926 - - 0.0000000000000000000000000000000000000000222 154.0
YYD1_k127_2555660_7 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000008483 111.0
YYD1_k127_2555660_8 PFAM cytochrome c, class I - - - 0.000000000000000589 84.0
YYD1_k127_2600294_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.7e-198 624.0
YYD1_k127_2600294_1 MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006842 592.0
YYD1_k127_2600294_2 DNA repair photolyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 450.0
YYD1_k127_2600294_3 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005663 359.0
YYD1_k127_2600294_4 PFAM multi antimicrobial extrusion protein MatE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 359.0
YYD1_k127_2600294_5 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005441 248.0
YYD1_k127_2600294_6 Putative serine dehydratase domain - - - 0.000000000000000000000000000000000000000000000000000007316 197.0
YYD1_k127_2600294_7 - - - - 0.000000000000000000000004509 106.0
YYD1_k127_2604932_0 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 556.0
YYD1_k127_2604932_1 Binding-protein-dependent transport system inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009361 398.0
YYD1_k127_2604932_2 Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 371.0
YYD1_k127_2604932_3 Belongs to the ABC transporter superfamily K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003331 256.0
YYD1_k127_2621619_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 3.812e-247 779.0
YYD1_k127_2621619_1 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 1.806e-245 767.0
YYD1_k127_2621619_10 CoA-binding protein K06929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000123 240.0
YYD1_k127_2621619_11 Glutathione S-Transferase K00799 GO:0003674,GO:0003824,GO:0004364,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016740,GO:0016765,GO:0030611,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0055114 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000501 243.0
YYD1_k127_2621619_12 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000005625 180.0
YYD1_k127_2621619_13 NIPSNAP - - - 0.0000000000000000000000000000000000000000001871 160.0
YYD1_k127_2621619_14 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000001449 156.0
YYD1_k127_2621619_15 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000876 152.0
YYD1_k127_2621619_16 Putative zinc- or iron-chelating domain K06940 - - 0.0000000000000000000000000000000004367 144.0
YYD1_k127_2621619_17 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000001936 139.0
YYD1_k127_2621619_18 Thioesterase superfamily - - - 0.00000000000000000000000000000007367 130.0
YYD1_k127_2621619_19 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000004366 117.0
YYD1_k127_2621619_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 6.844e-224 711.0
YYD1_k127_2621619_20 Receptor family ligand binding region K01999 - - 0.00000000000000000648 96.0
YYD1_k127_2621619_3 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.51e-205 646.0
YYD1_k127_2621619_4 glycolate oxidase subunit GlcD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 524.0
YYD1_k127_2621619_5 Zinc-binding dehydrogenase K12957,K13953,K19961 - 1.1.1.1,1.1.1.258 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 383.0
YYD1_k127_2621619_6 zinc protease protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008298 301.0
YYD1_k127_2621619_7 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 291.0
YYD1_k127_2621619_8 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002762 289.0
YYD1_k127_2621619_9 alpha/beta hydrolase fold K01066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001132 282.0
YYD1_k127_2637521_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1049.0
YYD1_k127_2637521_1 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 4.666e-296 938.0
YYD1_k127_2637521_2 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 4.147e-250 787.0
YYD1_k127_2637521_3 PFAM ABC transporter K02471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003376 457.0
YYD1_k127_2637521_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 366.0
YYD1_k127_2637521_5 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 315.0
YYD1_k127_2637521_6 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 311.0
YYD1_k127_2637521_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000008689 164.0
YYD1_k127_2637521_8 Phospholipase Carboxylesterase K06999 GO:0003674,GO:0003824,GO:0016787,GO:0016788,GO:0052689 - 0.0000000000000000000000000000000005034 140.0
YYD1_k127_2637521_9 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.00000000000000000000000000001094 127.0
YYD1_k127_2652290_0 Na H antiporter MnhB subunit-related protein K05559 - - 0.0 1362.0
YYD1_k127_2652290_1 NADH Ubiquinone plastoquinone (Complex I) K05561 - - 1.672e-195 632.0
YYD1_k127_2652290_2 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 578.0
YYD1_k127_2652290_3 uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000003258 230.0
YYD1_k127_2652290_4 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000007657 209.0
YYD1_k127_2652290_5 antiporter K05562 - - 0.0000000000000000000000000000000000000000000000000002715 193.0
YYD1_k127_2652290_6 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000003642 195.0
YYD1_k127_2652290_7 PFAM NADH-ubiquinone oxidoreductase chain 4L K05560 - - 0.000000000000000000000000000000000000000000000001125 177.0
YYD1_k127_2652290_8 PFAM Na H antiporter subunit K05564 - - 0.000000000000000000000000000002147 132.0
YYD1_k127_2652290_9 COG2212 Multisubunit Na H antiporter, MnhF subunit K05563 - - 0.000000000000000000000000001015 122.0
YYD1_k127_2653257_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000099 305.0
YYD1_k127_2653257_1 PFAM alpha beta hydrolase fold K01055 - 3.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000005087 263.0
YYD1_k127_2653257_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000005301 225.0
YYD1_k127_2653257_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000002927 166.0
YYD1_k127_2653257_4 - - - - 0.0000000000000000000000000000000000000000002306 164.0
YYD1_k127_2653257_5 DegT/DnrJ/EryC1/StrS aminotransferase family K01740 - 2.5.1.49 0.00000000000000000000000002345 108.0
YYD1_k127_2669805_0 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 5.609e-235 734.0
YYD1_k127_2669805_1 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000000000000000001258 237.0
YYD1_k127_2669805_2 Redoxin K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000001425 226.0
YYD1_k127_2669805_3 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000004831 194.0
YYD1_k127_2669805_4 Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000000000000007701 128.0
YYD1_k127_2669805_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000051 108.0
YYD1_k127_2669805_6 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000002048 57.0
YYD1_k127_2688147_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 4.071e-258 801.0
YYD1_k127_2688147_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 9.167e-196 614.0
YYD1_k127_2688147_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000001048 229.0
YYD1_k127_2688147_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000002062 165.0
YYD1_k127_2703234_0 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006244 408.0
YYD1_k127_2703234_1 phosphate transport system K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 391.0
YYD1_k127_2703234_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 396.0
YYD1_k127_2703234_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004374 349.0
YYD1_k127_2703234_4 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 304.0
YYD1_k127_2703234_5 DNA helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000001366 222.0
YYD1_k127_2728431_0 COG0467 RecA-superfamily ATPases implicated in signal K08482 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005914 604.0
YYD1_k127_2728431_1 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000001351 180.0
YYD1_k127_2728431_2 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000001119 178.0
YYD1_k127_2728431_3 Electron transfer DM13 - - - 0.0000000000000000000000000000000000000000000004442 175.0
YYD1_k127_2728431_4 Alpha/beta hydrolase family K00641 - 2.3.1.31 0.00000000000004836 73.0
YYD1_k127_2736019_0 PFAM extracellular solute-binding protein, family 5 K02035,K13893 - - 1.505e-215 688.0
YYD1_k127_2736019_1 binding-protein-dependent transport systems inner membrane component K13895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 502.0
YYD1_k127_2736019_2 transport system permease component K02033,K13894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 491.0
YYD1_k127_2736019_3 Belongs to the ABC transporter superfamily K02031,K02032,K13896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438 346.0
YYD1_k127_2736019_4 Belongs to the ABC transporter superfamily K02031,K02032,K10823,K13896,K15583 - - 0.000000000000000000000000000000005741 128.0
YYD1_k127_2774224_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1823.0
YYD1_k127_2776396_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004764 600.0
YYD1_k127_2776396_1 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000000000000000000002214 202.0
YYD1_k127_2776396_2 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000004597 145.0
YYD1_k127_2776396_3 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000000000002129 137.0
YYD1_k127_2776396_4 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.00000000000000000005268 93.0
YYD1_k127_2776670_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004228 529.0
YYD1_k127_2776670_1 Patatin phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 455.0
YYD1_k127_2776670_2 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 433.0
YYD1_k127_2776670_3 Enoyl-(Acyl carrier protein) reductase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 382.0
YYD1_k127_2776670_4 Protein of unknown function (DUF692) K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000006213 235.0
YYD1_k127_2776670_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000001515 194.0
YYD1_k127_2776670_6 Cupin - - - 0.0000000000000000000000000000000000000000000006889 171.0
YYD1_k127_2776670_7 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000002374 175.0
YYD1_k127_2776670_8 Phage SPO1 DNA K21929 - 3.2.2.27 0.000000000000000000000000001378 114.0
YYD1_k127_2776670_9 Predicted integral membrane protein (DUF2282) - - - 0.00000000000000000000000007687 115.0
YYD1_k127_2821461_0 Divalent cation transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002575 346.0
YYD1_k127_2821461_1 COG3119 Arylsulfatase A and related enzymes - - - 0.00000000000000000000000000000000000000000000000000002483 196.0
YYD1_k127_2894821_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 2.994e-230 726.0
YYD1_k127_2894821_1 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000001157 223.0
YYD1_k127_2894821_2 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.00000000000000001635 92.0
YYD1_k127_2899384_0 Receptor family ligand binding region - - - 2.109e-212 666.0
YYD1_k127_2899384_1 ATPases associated with a variety of cellular activities K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 359.0
YYD1_k127_2899384_10 Phosphatidylethanolamine-binding protein K06910 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000002459 148.0
YYD1_k127_2899384_11 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000002595 95.0
YYD1_k127_2899384_12 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000005664 85.0
YYD1_k127_2899384_13 Protein conserved in bacteria - - - 0.000002543 54.0
YYD1_k127_2899384_2 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 361.0
YYD1_k127_2899384_3 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 299.0
YYD1_k127_2899384_4 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000005997 243.0
YYD1_k127_2899384_5 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000000000000000000001835 229.0
YYD1_k127_2899384_6 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000000000000000000000000000000000000000000001065 214.0
YYD1_k127_2899384_7 L-2-amino-thiazoline-4-carboxylic acid hydrolase - - - 0.0000000000000000000000000000000000000000000000007712 179.0
YYD1_k127_2899384_8 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000002274 160.0
YYD1_k127_2899384_9 methyltransferase - - - 0.0000000000000000000000000000000000001364 149.0
YYD1_k127_2902521_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 2.926e-254 802.0
YYD1_k127_2902521_1 biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 331.0
YYD1_k127_2902521_2 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004187 299.0
YYD1_k127_2902521_3 Cytochrome c K17223 - - 0.000000000000000000000000000000000000000000000000000355 192.0
YYD1_k127_2902521_4 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000001199 182.0
YYD1_k127_2902521_5 Sulphur oxidation protein SoxZ K17227 - - 0.00000000000000001483 85.0
YYD1_k127_2909909_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 6.465e-309 958.0
YYD1_k127_291150_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 418.0
YYD1_k127_291150_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006077 412.0
YYD1_k127_291150_2 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 351.0
YYD1_k127_291150_3 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004734 326.0
YYD1_k127_291150_4 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002928 289.0
YYD1_k127_291150_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001269 266.0
YYD1_k127_291150_6 nuclease K01174 - 3.1.31.1 0.00000000000000000000000000000000002491 140.0
YYD1_k127_291150_7 serine threonine protein kinase - - - 0.0000000000000000000000000006184 119.0
YYD1_k127_291150_8 Protein of unknown function (DUF2905) - - - 0.0000000000000000000009582 95.0
YYD1_k127_291785_0 Required for insertion of 4Fe-4S clusters K15724 - - 0.000000000000000000000000000000000000000000000000000002827 191.0
YYD1_k127_291785_1 - - - - 0.000000000000000000000000000000000000000000003097 173.0
YYD1_k127_291785_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000000000005462 169.0
YYD1_k127_291785_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000002534 78.0
YYD1_k127_2921072_0 regulation of DNA-templated transcription, elongation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 435.0
YYD1_k127_2921072_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 321.0
YYD1_k127_2921072_2 Surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 313.0
YYD1_k127_2921072_3 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000009788 126.0
YYD1_k127_2929321_0 Malic enzyme K00029 - 1.1.1.40 0.0 1046.0
YYD1_k127_2929321_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 7.763e-207 645.0
YYD1_k127_2929321_10 - K11275 - - 0.00003375 50.0
YYD1_k127_2929321_2 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003882 417.0
YYD1_k127_2929321_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 411.0
YYD1_k127_2929321_4 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 346.0
YYD1_k127_2929321_5 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000000394 146.0
YYD1_k127_2929321_6 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000001459 91.0
YYD1_k127_2929321_7 - - - - 0.000000000000000002443 87.0
YYD1_k127_2929321_8 Protein of unknown function (DUF2442) - - - 0.0000000003068 64.0
YYD1_k127_2929321_9 Membrane - GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016020,GO:0033554,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - 0.00001351 55.0
YYD1_k127_2939728_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 4.909e-277 880.0
YYD1_k127_2939728_1 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 526.0
YYD1_k127_2939728_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003591 513.0
YYD1_k127_2939728_3 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003615 281.0
YYD1_k127_2939728_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000833 195.0
YYD1_k127_2939728_5 Secondary thiamine-phosphate synthase enzyme - - - 0.00000000000000000000000000000000000000000000000000002793 190.0
YYD1_k127_2939728_6 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000009474 187.0
YYD1_k127_2939728_7 PFAM MaoC like domain - - - 0.000000000000000000000004457 113.0
YYD1_k127_294079_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 7.8e-321 994.0
YYD1_k127_294079_1 Bacterial transcriptional activator domain - - - 2.647e-197 651.0
YYD1_k127_294079_10 Shikimate kinase K00851 - 2.7.1.12 0.00000000000000000000000000000000000000009472 167.0
YYD1_k127_294079_11 - - - - 0.00000000000000000000000000001205 119.0
YYD1_k127_294079_12 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000144 111.0
YYD1_k127_294079_13 - - - - 0.00000000000000000000000000849 116.0
YYD1_k127_294079_14 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000001021 101.0
YYD1_k127_294079_15 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.00000001042 58.0
YYD1_k127_294079_16 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000001738 58.0
YYD1_k127_294079_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008578 536.0
YYD1_k127_294079_3 IPP transferase K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 357.0
YYD1_k127_294079_4 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 341.0
YYD1_k127_294079_5 dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008427 316.0
YYD1_k127_294079_6 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 305.0
YYD1_k127_294079_7 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003837 311.0
YYD1_k127_294079_8 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006144 281.0
YYD1_k127_294079_9 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001353 255.0
YYD1_k127_2948847_0 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 441.0
YYD1_k127_2948847_1 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 426.0
YYD1_k127_2948847_2 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004353 389.0
YYD1_k127_2948847_3 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 299.0
YYD1_k127_2948847_4 Cytochrome c K08738 - - 0.0000000000000000000000000000591 124.0
YYD1_k127_295016_0 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 286.0
YYD1_k127_295016_1 Allophanate hydrolase subunit 2 K06350 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008291 263.0
YYD1_k127_295016_2 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000006355 191.0
YYD1_k127_295016_3 Allophanate hydrolase subunit 1 - - - 0.000000000000000000000000000000000000000000000001394 183.0
YYD1_k127_295240_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005262 496.0
YYD1_k127_295240_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 458.0
YYD1_k127_295240_2 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008331 371.0
YYD1_k127_295240_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004845 327.0
YYD1_k127_295240_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 305.0
YYD1_k127_295240_5 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000006468 218.0
YYD1_k127_295240_6 - - - - 0.00000000000000000000000000000000000000000000000486 174.0
YYD1_k127_295240_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.000000000000000000000000162 116.0
YYD1_k127_295240_8 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000003707 78.0
YYD1_k127_296726_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003026 566.0
YYD1_k127_2974035_0 COGs COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K04108 - 1.3.7.9 3.219e-254 805.0
YYD1_k127_2974035_1 C-terminal domain of 1-Cys peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 365.0
YYD1_k127_2974035_2 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000009873 216.0
YYD1_k127_2992220_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 9.078e-229 725.0
YYD1_k127_2992220_1 DNA polymerase III chi subunit, HolC - - - 0.0000000000000000000000007349 106.0
YYD1_k127_2992220_2 - - - - 0.000000005299 62.0
YYD1_k127_3007862_0 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 454.0
YYD1_k127_3007862_1 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 359.0
YYD1_k127_3007862_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000582 314.0
YYD1_k127_3007862_3 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000004975 218.0
YYD1_k127_3007862_4 Outer membrane protein beta-barrel domain - - - 0.000000000000000000001718 101.0
YYD1_k127_3036617_0 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001188 287.0
YYD1_k127_3036617_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001988 280.0
YYD1_k127_3036617_2 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.00000000000000000000000004471 110.0
YYD1_k127_304440_0 GTP-binding protein K06207 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 546.0
YYD1_k127_304440_1 Belongs to the class I fructose-bisphosphate aldolase family K01623 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005864 400.0
YYD1_k127_304440_2 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 369.0
YYD1_k127_3051162_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 349.0
YYD1_k127_3051162_1 SMART cyclic nucleotide-binding K10914 - - 0.0000000000000000000000000000000000000000000000000000000006289 210.0
YYD1_k127_3051162_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00001,K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000001504 136.0
YYD1_k127_306100_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1574.0
YYD1_k127_306100_1 Copper binding periplasmic protein CusF K07798,K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 564.0
YYD1_k127_306100_10 Copper binding periplasmic protein CusF K07810 - - 0.00000000000000002484 92.0
YYD1_k127_306100_11 Short C-terminal domain K08982 - - 0.000000000000002796 84.0
YYD1_k127_306100_12 - - - - 0.000000000000008553 80.0
YYD1_k127_306100_13 Heavy-metal-associated domain K07213 - - 0.00000000000001464 77.0
YYD1_k127_306100_14 Protein of unknown function (DUF2933) - - - 0.00000000000001721 79.0
YYD1_k127_306100_15 - - - - 0.00000000002399 69.0
YYD1_k127_306100_16 Redoxin K02199 - - 0.000000006949 61.0
YYD1_k127_306100_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003331 419.0
YYD1_k127_306100_3 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 337.0
YYD1_k127_306100_4 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 333.0
YYD1_k127_306100_5 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 318.0
YYD1_k127_306100_6 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000002083 173.0
YYD1_k127_306100_7 - - - - 0.000000000000000000000000000000000002247 150.0
YYD1_k127_306100_8 - - - - 0.0000000000000000000002596 105.0
YYD1_k127_306100_9 cellulose binding - - - 0.0000000000000000005031 94.0
YYD1_k127_3074363_0 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004775 550.0
YYD1_k127_3074363_1 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001536 263.0
YYD1_k127_3074363_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000007655 110.0
YYD1_k127_3082073_0 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005419 466.0
YYD1_k127_3082073_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 292.0
YYD1_k127_3082073_2 TIGRFAM Urea carboxylase-associated protein 1 K09967 - - 0.000000000000000000000000000000000000000000000000000000000000000000007364 239.0
YYD1_k127_3082073_3 ThiS family K03154 - - 0.00000000000000001638 84.0
YYD1_k127_3082073_4 - - - - 0.000002557 51.0
YYD1_k127_3098732_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 579.0
YYD1_k127_3098732_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 435.0
YYD1_k127_3098732_2 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000126 282.0
YYD1_k127_3098732_3 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000001431 244.0
YYD1_k127_3098732_4 COG1247 Sortase and related acyltransferases K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000000000000000003468 215.0
YYD1_k127_3098732_5 - - - - 0.000000000000000000000000000000000000002597 149.0
YYD1_k127_3098732_6 - - - - 0.0000000006291 61.0
YYD1_k127_3136703_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005229 492.0
YYD1_k127_3136703_1 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 491.0
YYD1_k127_3136703_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 425.0
YYD1_k127_3136703_3 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000003216 229.0
YYD1_k127_3136703_4 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000000004409 211.0
YYD1_k127_3136703_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000001329 162.0
YYD1_k127_3136703_6 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000003749 127.0
YYD1_k127_3138143_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 6.682e-263 818.0
YYD1_k127_3138143_1 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 434.0
YYD1_k127_3138143_2 Uncharacterized conserved protein (DUF2183) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 321.0
YYD1_k127_3138143_3 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.000000000000000000000000000000000001255 141.0
YYD1_k127_3138143_4 Putative methyltransferase - - - 0.000000000001128 70.0
YYD1_k127_3150277_0 Belongs to the GcvT family K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 374.0
YYD1_k127_3150277_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000006333 169.0
YYD1_k127_3150277_2 FIST N domain - - - 0.00000000000000000000000000000000000000009053 153.0
YYD1_k127_3153496_0 chain 5 L K00341 - 1.6.5.3 1.722e-269 848.0
YYD1_k127_3153496_1 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 1.616e-268 844.0
YYD1_k127_3153496_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000003289 164.0
YYD1_k127_3153496_11 Belongs to the pirin family K06911 - - 0.000000000000000000000009316 111.0
YYD1_k127_3153496_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 4.799e-242 754.0
YYD1_k127_3153496_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 554.0
YYD1_k127_3153496_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009173 524.0
YYD1_k127_3153496_5 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 304.0
YYD1_k127_3153496_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 297.0
YYD1_k127_3153496_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000003381 237.0
YYD1_k127_3153496_8 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000006313 239.0
YYD1_k127_3153496_9 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000007302 206.0
YYD1_k127_3185910_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 509.0
YYD1_k127_3185910_1 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008021 255.0
YYD1_k127_3185910_2 Type IV pilus biogenesis stability protein PilW - - - 0.000000000000000003258 98.0
YYD1_k127_3186434_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000007997 259.0
YYD1_k127_3186434_1 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000007218 232.0
YYD1_k127_3186434_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000002893 223.0
YYD1_k127_3186434_3 PFAM ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000004119 175.0
YYD1_k127_3186434_4 Hemerythrin HHE cation binding domain - - - 0.00000000001639 72.0
YYD1_k127_3191884_0 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003829 618.0
YYD1_k127_3191884_1 PFAM aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 515.0
YYD1_k127_3191884_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 407.0
YYD1_k127_3191884_3 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 299.0
YYD1_k127_3191884_4 cytochrome c K17223 - - 0.000000000000000000000000000000000000000000002094 169.0
YYD1_k127_3191884_5 sulfur oxidation protein (SoxY) K17226 - - 0.0000000000000000000000000000000000000000004127 168.0
YYD1_k127_3191884_6 Sulphur oxidation protein SoxZ - - - 0.00000000000000000000000000000000000000002327 154.0
YYD1_k127_3191884_7 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000003544 158.0
YYD1_k127_3191884_8 Peptidase m28 - - - 0.0000000000000000000000000000002062 126.0
YYD1_k127_3194204_0 ATP dependent DNA ligase C terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 510.0
YYD1_k127_3194204_1 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000468 197.0
YYD1_k127_3194204_2 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000000000001063 131.0
YYD1_k127_3194204_3 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000006841 128.0
YYD1_k127_3194204_4 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.000000000000000000000002649 107.0
YYD1_k127_3198441_0 Uncharacterised protein family (UPF0227) K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002765 287.0
YYD1_k127_3198441_1 Belongs to the peptidase S51 family K05995 - 3.4.13.21 0.0000000000000000000000000000000000000000000000000000000000000000000001476 246.0
YYD1_k127_3198441_2 binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000001703 234.0
YYD1_k127_3198441_3 Protein of unknown function (DUF3182) - - - 0.000000000000000000000000001307 114.0
YYD1_k127_3199171_0 ABC-type multidrug transport system ATPase and permease K02021 - - 4.685e-268 850.0
YYD1_k127_3199171_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000555 294.0
YYD1_k127_3199171_2 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000001061 162.0
YYD1_k127_3199171_3 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000282 150.0
YYD1_k127_3216425_0 PFAM Glyoxalase bleomycin resistance protein dioxygenase K08234 - - 0.00000000000000000000000000000000000000007408 156.0
YYD1_k127_3216425_1 Protein of unknown function (DUF3618) - - - 0.0000000000000000000000000000000000001356 155.0
YYD1_k127_3216425_2 ABC transporter - - - 0.000000000000000000000000000000131 126.0
YYD1_k127_3216425_3 - - - - 0.000001974 59.0
YYD1_k127_3216425_4 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.000006375 54.0
YYD1_k127_3227230_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0 1072.0
YYD1_k127_3227230_1 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 7.767e-241 763.0
YYD1_k127_3227230_10 PFAM Lytic transglycosylase catalytic - - - 0.000000000000000000000000000000002562 141.0
YYD1_k127_3227230_11 Thiol-disulfide isomerase K00384 - 1.8.1.9 0.000000000000000000000000005796 112.0
YYD1_k127_3227230_12 Domain of unknown function (DUF4864) - - - 0.00004023 50.0
YYD1_k127_3227230_2 Starch synthase catalytic domain K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003895 447.0
YYD1_k127_3227230_3 PFAM ATPase associated with various cellular activities AAA_3 K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 431.0
YYD1_k127_3227230_4 PFAM Na dependent nucleoside transporter K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 431.0
YYD1_k127_3227230_5 PFAM Serine threonine protein kinase-related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000343 393.0
YYD1_k127_3227230_6 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 346.0
YYD1_k127_3227230_7 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004358 327.0
YYD1_k127_3227230_8 UPF0761 membrane protein K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005176 273.0
YYD1_k127_3227230_9 NADPH-dependent FMN reductase K03809 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000004405 220.0
YYD1_k127_3239405_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 417.0
YYD1_k127_3239405_1 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002446 267.0
YYD1_k127_3239405_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001354 257.0
YYD1_k127_3239405_3 Membrane - - - 0.00000000000000000000000000000000000000000001486 177.0
YYD1_k127_3239405_4 Protein of unknown function DUF58 - - - 0.00003185 56.0
YYD1_k127_3244400_0 luxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001226 242.0
YYD1_k127_3244400_1 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000004004 239.0
YYD1_k127_3244400_2 Tetratricopeptide repeat - - - 0.0000000000000000002382 89.0
YYD1_k127_3244400_3 transcriptional regulatory protein K02475,K07702 - - 0.00002855 51.0
YYD1_k127_3257920_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 2.862e-277 877.0
YYD1_k127_3257920_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 499.0
YYD1_k127_3257920_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002334 249.0
YYD1_k127_3257920_3 transcriptional - - - 0.000000000000000000000000000000000000000000000000000000007165 200.0
YYD1_k127_3257920_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000001895 192.0
YYD1_k127_3257920_5 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000006241 175.0
YYD1_k127_3257920_6 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000001291 113.0
YYD1_k127_3257920_7 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000005972 88.0
YYD1_k127_3280619_0 PFAM Peptidase M48 K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 451.0
YYD1_k127_3280619_1 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002651 267.0
YYD1_k127_3280619_2 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.00000000000000000000000000000000000000000000005876 171.0
YYD1_k127_3280619_3 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000000000000000084 165.0
YYD1_k127_3280619_4 Putative prokaryotic signal transducing protein - - - 0.00000000000000001203 90.0
YYD1_k127_3289356_0 Multicopper oxidase K22348 - 1.16.3.3 1.118e-226 709.0
YYD1_k127_3289356_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 509.0
YYD1_k127_3289356_2 Copper binding proteins, plastocyanin/azurin family - - - 0.0000000000000000000000000000000000000000000005534 180.0
YYD1_k127_3289356_4 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 GO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004115,GO:0005488,GO:0005506,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006163,GO:0006195,GO:0006198,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008081,GO:0008150,GO:0008152,GO:0008199,GO:0008663,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009187,GO:0009214,GO:0009259,GO:0009261,GO:0009405,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0030145,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042301,GO:0042545,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044419,GO:0044464,GO:0045229,GO:0046058,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0051704,GO:0055086,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.4.53 0.0008264 43.0
YYD1_k127_3289494_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 593.0
YYD1_k127_3289494_1 Bacterial regulatory helix-turn-helix protein, lysR family K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002509 281.0
YYD1_k127_3289494_2 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000006899 182.0
YYD1_k127_3289494_3 NUDIX domain - - - 0.00000000000000000000000000000000000000000000002305 173.0
YYD1_k127_3289494_4 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000008571 137.0
YYD1_k127_3291639_0 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 372.0
YYD1_k127_3291639_1 Oxidoreductase family, C-terminal alpha beta domain K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 314.0
YYD1_k127_3291639_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000001406 222.0
YYD1_k127_3291639_3 Pfam:UPF0118 - - - 0.00000000000000000000000000000000000000000000000000000001157 211.0
YYD1_k127_3291639_4 - - - - 0.000000000000003574 80.0
YYD1_k127_3291639_5 Protein of unknown function (DUF2799) - - - 0.0000405 53.0
YYD1_k127_3291639_6 Protein of unknown function (DUF2799) - - - 0.00005964 49.0
YYD1_k127_3297709_0 NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 0.0 1016.0
YYD1_k127_3297709_1 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006317 507.0
YYD1_k127_3297709_2 ACT domain - - - 0.000000000000000000000000000000006981 134.0
YYD1_k127_331413_0 Ring hydroxylating alpha subunit (catalytic domain) K14748 - - 9.083e-214 670.0
YYD1_k127_331413_1 COG4618 ABC-type protease lipase transport system, ATPase and permease components K16299 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 527.0
YYD1_k127_331413_10 Protein of unknown function (DUF1178) - - - 0.00000000000000000000000000000004524 133.0
YYD1_k127_331413_11 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.0000000000000003335 94.0
YYD1_k127_331413_2 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 436.0
YYD1_k127_331413_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 374.0
YYD1_k127_331413_4 TIGRFAM type I secretion membrane fusion protein, HlyD family K02022,K12537 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 332.0
YYD1_k127_331413_5 Hemolysin-type calcium-binding repeat (2 copies) K01406 - 3.4.24.40 0.0000000000000000000000000000000000000000000000000000000000000000000005645 267.0
YYD1_k127_331413_6 DNA polymerase III, delta' K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000007897 226.0
YYD1_k127_331413_7 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000001366 208.0
YYD1_k127_331413_8 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000001885 173.0
YYD1_k127_331413_9 Ring hydroxylating beta subunit K16303 - 1.14.12.25 0.0000000000000000000000000000000000000001631 159.0
YYD1_k127_3322598_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 1.228e-196 622.0
YYD1_k127_3322598_1 enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 348.0
YYD1_k127_3322598_2 enoyl-CoA hydratase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 312.0
YYD1_k127_3322598_3 Phenylacetic acid degradation protein PaaY K02617 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001625 249.0
YYD1_k127_3322598_4 PFAM isochorismatase hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000002932 221.0
YYD1_k127_3322598_5 Histidine kinase - - - 0.00000009628 60.0
YYD1_k127_3325654_0 Histidine Phosphotransfer domain K02487,K06596 - - 5.194e-310 1006.0
YYD1_k127_3325654_1 Tripartite tricarboxylate transporter TctA family - - - 5.579e-207 654.0
YYD1_k127_3325654_10 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000008724 203.0
YYD1_k127_3325654_11 response regulator receiver K02658 - - 0.00000000000000000000000000000000000000000000001674 173.0
YYD1_k127_3325654_12 PFAM CheW domain protein K02659 - - 0.000000000000000000000000000000000000001091 153.0
YYD1_k127_3325654_13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.000000000000000000000000000000008644 136.0
YYD1_k127_3325654_15 PFAM short chain dehydrogenase K00059 - 1.1.1.100 0.00000000000000000003683 94.0
YYD1_k127_3325654_16 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.000000000005822 76.0
YYD1_k127_3325654_2 Methyl-accepting chemotaxis protein K02660 - - 1.695e-194 627.0
YYD1_k127_3325654_3 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 465.0
YYD1_k127_3325654_4 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 451.0
YYD1_k127_3325654_5 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 413.0
YYD1_k127_3325654_6 Receptor family ligand binding region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008076 398.0
YYD1_k127_3325654_7 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 343.0
YYD1_k127_3325654_8 6-phosphogluconolactonase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 316.0
YYD1_k127_3325654_9 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000006794 220.0
YYD1_k127_3335303_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.0 1146.0
YYD1_k127_3335303_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.319e-203 642.0
YYD1_k127_3335303_10 Etoposide-induced protein 2.4 (EI24) - - - 0.00000000000000000000000000000000000000004557 161.0
YYD1_k127_3335303_2 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 419.0
YYD1_k127_3335303_3 Glutaredoxin-family domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 404.0
YYD1_k127_3335303_4 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 327.0
YYD1_k127_3335303_5 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005473 291.0
YYD1_k127_3335303_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001503 284.0
YYD1_k127_3335303_7 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000001169 268.0
YYD1_k127_3335303_8 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000001684 185.0
YYD1_k127_3335303_9 Phasin protein - - - 0.000000000000000000000000000000000000000000000002136 178.0
YYD1_k127_3377234_0 SMART Tetratricopeptide domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003683 479.0
YYD1_k127_3377234_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 394.0
YYD1_k127_3377234_2 RNA polymerase sigma factor RpoH K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008114 343.0
YYD1_k127_3377234_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008185 329.0
YYD1_k127_3377234_4 ABC transporter K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 290.0
YYD1_k127_3377234_5 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000006539 240.0
YYD1_k127_3377234_6 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.00000000000000000000000000000000000000000000000000000000000000000348 236.0
YYD1_k127_3377234_7 RNA methyltransferase, RsmD family - - - 0.000000000000000000000000000000000000000000000000002169 190.0
YYD1_k127_3377234_8 SCO1/SenC - - - 0.0000000000000000001501 89.0
YYD1_k127_3384706_0 Shikimate dehydrogenase substrate binding domain K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 391.0
YYD1_k127_3384706_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 387.0
YYD1_k127_3384706_2 Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate K03785 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000005807 234.0
YYD1_k127_3384706_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000002451 207.0
YYD1_k127_3384706_4 - - - - 0.00000000000000000000000000000000000000000000000000000677 207.0
YYD1_k127_3384706_5 PFAM oxidoreductase domain protein K19181 - 1.1.1.292 0.0000001892 52.0
YYD1_k127_338824_0 twitching motility protein K02670 - - 1.682e-207 652.0
YYD1_k127_338824_1 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 8.679e-196 631.0
YYD1_k127_338824_2 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 605.0
YYD1_k127_338824_3 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001926 273.0
YYD1_k127_338824_4 Isocitrate lyase K01637 - 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000337 245.0
YYD1_k127_338824_5 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000009758 243.0
YYD1_k127_338824_6 integral membrane protein K02221 - - 0.0000000000000000000000000000000000000000157 161.0
YYD1_k127_338824_7 Protein of unknown function (DUF4239) - - - 0.0000000000000000000000000000000000004912 149.0
YYD1_k127_338824_8 Belongs to the UPF0235 family K09131 - - 0.00000000000000001122 92.0
YYD1_k127_3393153_0 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008418 333.0
YYD1_k127_3393153_1 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 328.0
YYD1_k127_3393153_2 asparaginase K13051 - 3.4.19.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 289.0
YYD1_k127_3393153_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000012 275.0
YYD1_k127_3393153_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000008458 165.0
YYD1_k127_3393153_5 Domain of unknown function (DUF4112) - - - 0.00000000000000000000000000000000000000003264 158.0
YYD1_k127_3393153_6 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000002779 147.0
YYD1_k127_34082_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 405.0
YYD1_k127_34082_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 367.0
YYD1_k127_34082_2 TIGRFAM 3-oxoacid CoA-transferase, A subunit K01031 - 2.8.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 352.0
YYD1_k127_34082_3 Coenzyme A transferase K01032 - 2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 346.0
YYD1_k127_34082_4 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000000376 160.0
YYD1_k127_34082_5 Extra-cytoplasmic solute receptor family protein 121 - - - 0.00000000000000000003809 92.0
YYD1_k127_34082_6 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000000000001643 89.0
YYD1_k127_3465820_0 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 510.0
YYD1_k127_3465820_1 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 437.0
YYD1_k127_3465820_2 Belongs to the UPF0502 family K09915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005663 282.0
YYD1_k127_3465820_3 Benzoate membrane transport protein K05782 - - 0.000000000000000000000000000000000000000000000000000000000006949 214.0
YYD1_k127_3466992_0 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 3.437e-256 824.0
YYD1_k127_3466992_1 PD-(D/E)XK nuclease superfamily K01144 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 445.0
YYD1_k127_3466992_2 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 294.0
YYD1_k127_3466992_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000003581 154.0
YYD1_k127_3466992_4 IMP dehydrogenase activity - - - 0.000000000000000000000000000009788 126.0
YYD1_k127_3466992_5 Phage regulatory protein - - - 0.00000000000000000000000000004406 120.0
YYD1_k127_3470823_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01583 - 4.1.1.19 5.818e-210 657.0
YYD1_k127_3470823_1 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 517.0
YYD1_k127_3470823_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 347.0
YYD1_k127_3482987_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 1.031e-251 787.0
YYD1_k127_3482987_1 Fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 501.0
YYD1_k127_3482987_2 Bacterial regulatory helix-turn-helix protein, lysR family K13634 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 413.0
YYD1_k127_3482987_3 Tetrapyrrole (Corrin/Porphyrin) Methylases K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000001787 229.0
YYD1_k127_3482987_4 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0000000000000000000000000000000000000001691 160.0
YYD1_k127_3482987_5 Bacterial protein of unknown function (DUF934) - - - 0.000000000000000000000002779 107.0
YYD1_k127_3484131_0 Amidohydrolase family - - - 1.94e-249 779.0
YYD1_k127_3484131_1 Belongs to the sigma-70 factor family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 508.0
YYD1_k127_3484131_2 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000001718 161.0
YYD1_k127_3484131_3 Diguanylate cyclase - - - 0.0000000000001735 80.0
YYD1_k127_3484131_4 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000003351 58.0
YYD1_k127_3498793_0 Urease alpha-subunit, N-terminal domain K01428 - 3.5.1.5 4.749e-306 946.0
YYD1_k127_3498793_1 Urea ABC transporter ATP-binding protein urtd K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 372.0
YYD1_k127_3498793_10 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000000008542 168.0
YYD1_k127_3498793_11 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000000001536 158.0
YYD1_k127_3498793_12 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.0000000000000000000000000000009252 134.0
YYD1_k127_3498793_2 ABC transporter, ATP-binding protein K11963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 350.0
YYD1_k127_3498793_3 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 349.0
YYD1_k127_3498793_4 L-phenylalanine transmembrane transporter activity K11960,K11961 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 332.0
YYD1_k127_3498793_5 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003953 266.0
YYD1_k127_3498793_6 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.000000000000000000000000000000000000000000000000000000000000000000002416 239.0
YYD1_k127_3498793_7 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000000000000000000000000000000000000000000000000000004884 229.0
YYD1_k127_3498793_8 of the double-stranded beta helix - - - 0.000000000000000000000000000000000000000000000000001252 184.0
YYD1_k127_3498793_9 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.000000000000000000000000000000000000000000000000004596 181.0
YYD1_k127_3507596_0 ABC transporter transmembrane region K02021 - - 7.824e-273 864.0
YYD1_k127_3507596_1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 363.0
YYD1_k127_3507596_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005305 301.0
YYD1_k127_3507596_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000124 237.0
YYD1_k127_3507596_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000028 206.0
YYD1_k127_3507596_5 cyclic nucleotide-binding - - - 0.0000000000000000000000000000000003597 152.0
YYD1_k127_350780_0 Uncharacterized protein conserved in bacteria (DUF2090) K03338 - 2.7.1.92 4.031e-304 944.0
YYD1_k127_350780_1 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009017 430.0
YYD1_k127_350780_2 KduI/IolB family K03337 - 5.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 409.0
YYD1_k127_350780_3 Xylose isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000698 398.0
YYD1_k127_350780_4 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 385.0
YYD1_k127_350780_5 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 359.0
YYD1_k127_350780_6 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000006969 222.0
YYD1_k127_3508632_0 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 437.0
YYD1_k127_3508632_1 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000979 248.0
YYD1_k127_3508632_2 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000001183 182.0
YYD1_k127_3508632_3 aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000003706 137.0
YYD1_k127_3511761_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007379 418.0
YYD1_k127_3511761_1 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 309.0
YYD1_k127_3511761_2 Predicted membrane protein (DUF2238) K08984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006166 289.0
YYD1_k127_3511761_3 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000000000001939 208.0
YYD1_k127_3511761_4 - - - - 0.000000000002243 70.0
YYD1_k127_352812_0 mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 526.0
YYD1_k127_352812_1 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006846 502.0
YYD1_k127_352812_2 POTRA domain TamA domain 1 - - - 0.000000000000000000000000000000000000000000000000000001702 210.0
YYD1_k127_352812_3 - - - - 0.00000000007709 66.0
YYD1_k127_3533493_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 548.0
YYD1_k127_3533493_1 MerR, DNA binding K13639 - - 0.00000000000000000000000000000000000000000000000000000000000000000009798 232.0
YYD1_k127_3533493_2 Protein of unknown function (DUF2938) - - - 0.000000000000000000000000000000000000000000000000000000000000001248 222.0
YYD1_k127_3533493_3 Cupin domain K21700 - - 0.00000000000000000000000000007706 121.0
YYD1_k127_3533493_4 Glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.0000000000000000000000000001873 121.0
YYD1_k127_3534302_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.002e-211 668.0
YYD1_k127_3534302_1 PFAM Sulfatase K01130 - 3.1.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 358.0
YYD1_k127_3534302_2 Domain of unknown function (DUF1992) - - - 0.000000000000000000299 100.0
YYD1_k127_3534426_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 9.601e-273 856.0
YYD1_k127_3534426_1 Peptidase M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002391 269.0
YYD1_k127_3534426_2 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001443 237.0
YYD1_k127_3534426_3 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000005144 189.0
YYD1_k127_3534426_4 Belongs to the sulfur carrier protein TusA family K04085 - - 0.000000000000000000003797 95.0
YYD1_k127_35424_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 1.855e-220 703.0
YYD1_k127_35424_1 luxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009286 258.0
YYD1_k127_35424_2 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000005513 229.0
YYD1_k127_35424_3 endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000004706 169.0
YYD1_k127_35424_4 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000005039 173.0
YYD1_k127_35424_5 TPR repeat - - - 0.00000000000000000000000001607 115.0
YYD1_k127_35424_6 response regulator - - - 0.0000002191 57.0
YYD1_k127_3552288_0 MltA-interacting protein MipA K07274 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005056 348.0
YYD1_k127_3552288_1 KR domain K00065 - 1.1.1.127 0.0000000000000000000000000000000000000000000000000000000000000000000000003792 248.0
YYD1_k127_3552288_2 PFAM Glutathione S-transferase, C-terminal domain K07393 - 1.8.5.7 0.0000000000000000000000000000000000000000000000000000000000000001253 224.0
YYD1_k127_3553343_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 440.0
YYD1_k127_3553343_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 330.0
YYD1_k127_3553343_2 Modulates RecA activity K03565 - - 0.00000000000000000000008663 104.0
YYD1_k127_3553343_3 - - - - 0.0000000000000002234 88.0
YYD1_k127_3553343_4 - - - - 0.0000001815 53.0
YYD1_k127_3555284_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000323 334.0
YYD1_k127_3555284_1 type II secretion system protein K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 302.0
YYD1_k127_3555284_2 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000003124 232.0
YYD1_k127_3555284_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000001586 231.0
YYD1_k127_355789_0 Tripartite tricarboxylate transporter TctA family - - - 2.074e-209 662.0
YYD1_k127_355789_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000439 601.0
YYD1_k127_355789_10 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000002689 99.0
YYD1_k127_355789_11 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000005246 72.0
YYD1_k127_355789_12 response regulator - - - 0.0000001064 58.0
YYD1_k127_355789_2 Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source K05396,K17950 GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016829,GO:0016846,GO:0019752,GO:0019842,GO:0030170,GO:0034011,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575 4.4.1.15,4.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 315.0
YYD1_k127_355789_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 316.0
YYD1_k127_355789_4 COG2206 HD-GYP domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 293.0
YYD1_k127_355789_5 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001251 267.0
YYD1_k127_355789_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000004637 162.0
YYD1_k127_355789_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000003064 166.0
YYD1_k127_355789_8 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000003899 152.0
YYD1_k127_355789_9 - - - - 0.00000000000000000000008652 111.0
YYD1_k127_3559040_0 Succinylglutamate desuccinylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 294.0
YYD1_k127_3559040_1 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001275 287.0
YYD1_k127_3559040_2 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000002126 180.0
YYD1_k127_3566934_0 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 9.604e-257 803.0
YYD1_k127_3566934_1 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 360.0
YYD1_k127_3566934_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 305.0
YYD1_k127_3566934_3 cytochrome c oxidase (Subunit II) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003871 250.0
YYD1_k127_3566934_4 - - - - 0.00000000000269 69.0
YYD1_k127_3573643_0 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 7.094e-243 768.0
YYD1_k127_3573643_1 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000002256 151.0
YYD1_k127_3573643_2 ABC-type dipeptide transport system periplasmic component K02035 - - 0.0000000000000002524 87.0
YYD1_k127_3588316_0 Cytochrome c oxidase accessory protein CcoG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006425 520.0
YYD1_k127_3588316_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008361 389.0
YYD1_k127_3588316_2 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 351.0
YYD1_k127_3588316_3 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 327.0
YYD1_k127_3588316_4 Metal-dependent phosphohydrolase K07037 - - 0.000000000001754 76.0
YYD1_k127_3588316_5 Cbb3-type cytochrome oxidase K00407 - - 0.0009594 44.0
YYD1_k127_3600605_0 Phospholipase D Active site motif K01115 - 3.1.4.4 2.198e-230 735.0
YYD1_k127_3600605_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008383 283.0
YYD1_k127_3600605_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000001452 218.0
YYD1_k127_3600605_3 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.000000000000000000000000000001338 122.0
YYD1_k127_3600605_4 glutathione transferase activity K00799 - 2.5.1.18 0.000000000000000000000000000009659 125.0
YYD1_k127_3678383_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 2.725e-288 895.0
YYD1_k127_3678383_1 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 533.0
YYD1_k127_3678383_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 516.0
YYD1_k127_3678383_3 pfkB family carbohydrate kinase K21344 - 2.7.1.167 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 329.0
YYD1_k127_3678383_4 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000006654 165.0
YYD1_k127_3678383_5 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000000000004581 81.0
YYD1_k127_3678383_6 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000001897 60.0
YYD1_k127_3744204_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 576.0
YYD1_k127_3744204_1 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003422 413.0
YYD1_k127_3755981_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.852e-303 937.0
YYD1_k127_3755981_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 506.0
YYD1_k127_3755981_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001674 260.0
YYD1_k127_3755981_3 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003729 271.0
YYD1_k127_3755981_4 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000007123 206.0
YYD1_k127_3765321_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 5.838e-304 938.0
YYD1_k127_3765321_1 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 6.106e-292 906.0
YYD1_k127_3765321_10 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000007814 57.0
YYD1_k127_3765321_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006021 584.0
YYD1_k127_3765321_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 564.0
YYD1_k127_3765321_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 481.0
YYD1_k127_3765321_5 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 450.0
YYD1_k127_3765321_6 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0000000000000000000000000000000000000000000000000000003722 194.0
YYD1_k127_3765321_7 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000001586 150.0
YYD1_k127_3765321_8 Could be involved in insertion of integral membrane proteins into the membrane K08998 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031226,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.000000000000000000008945 102.0
YYD1_k127_3765321_9 Ribosomal protein L34 - - - 0.00000000002643 64.0
YYD1_k127_3770412_0 Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family K03455 - - 1.22e-199 640.0
YYD1_k127_3770412_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008362 558.0
YYD1_k127_3770412_10 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008547 317.0
YYD1_k127_3770412_11 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.000000000000000000000000000000000000000000000000000000000175 207.0
YYD1_k127_3770412_12 - - - - 0.000000000000000000000000000000000000000000000000000000004249 220.0
YYD1_k127_3770412_13 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000000000000000000007712 195.0
YYD1_k127_3770412_14 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000000000000000000009471 197.0
YYD1_k127_3770412_15 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000002704 184.0
YYD1_k127_3770412_16 peptidase S16 K07157 - - 0.0000000000000000000000000000000000000000000006607 184.0
YYD1_k127_3770412_18 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000004789 157.0
YYD1_k127_3770412_19 ribosomal subunit interface protein K05808 - - 0.00000000000000000000000000000000001227 137.0
YYD1_k127_3770412_2 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 478.0
YYD1_k127_3770412_20 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.00000000000000000000000000000000001501 147.0
YYD1_k127_3770412_21 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000000005279 124.0
YYD1_k127_3770412_22 Prepilin-type N-terminal cleavage methylation domain - - - 0.00000000000000000000001238 105.0
YYD1_k127_3770412_23 - - - - 0.0000000001124 74.0
YYD1_k127_3770412_3 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 469.0
YYD1_k127_3770412_4 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 418.0
YYD1_k127_3770412_5 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008076 398.0
YYD1_k127_3770412_6 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 394.0
YYD1_k127_3770412_7 Lipopolysaccharide export system ATP-binding protein K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 372.0
YYD1_k127_3770412_8 a g-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000595 361.0
YYD1_k127_3770412_9 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 322.0
YYD1_k127_3775936_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 5.86e-201 635.0
YYD1_k127_3775936_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 458.0
YYD1_k127_3775936_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000000009937 262.0
YYD1_k127_3775936_3 Fructosamine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004978 267.0
YYD1_k127_3775936_4 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002519 249.0
YYD1_k127_3775936_5 Glutaredoxin K07390 - - 0.0000000000000000000000000000000000000000000001676 169.0
YYD1_k127_3775936_6 Histidine kinase K08082 - 2.7.13.3 0.0002898 49.0
YYD1_k127_3781781_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007314 357.0
YYD1_k127_3781781_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005767 351.0
YYD1_k127_3781781_2 serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006826 347.0
YYD1_k127_3781781_3 Stress-induced protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 295.0
YYD1_k127_3781781_4 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000001681 227.0
YYD1_k127_3781781_5 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000001219 204.0
YYD1_k127_3781781_6 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000003155 185.0
YYD1_k127_3781781_7 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000001523 69.0
YYD1_k127_3789283_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004557 395.0
YYD1_k127_3789283_1 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007407 377.0
YYD1_k127_3789283_2 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000001527 105.0
YYD1_k127_3790537_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 2.976e-206 660.0
YYD1_k127_3790537_1 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 583.0
YYD1_k127_3790537_2 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 563.0
YYD1_k127_3790537_3 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000000000000000000000000000000001441 144.0
YYD1_k127_3790537_4 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.000000000000000000000005215 106.0
YYD1_k127_3796683_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 541.0
YYD1_k127_3796683_1 Histidine kinase K10715 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 533.0
YYD1_k127_3796683_10 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) - - - 0.00000000000000000000000000000000000000000002447 173.0
YYD1_k127_3796683_11 Putative member of DMT superfamily (DUF486) K09922 - - 0.000000000000000000000000277 106.0
YYD1_k127_3796683_12 Protein of unknown function (DUF3618) - - - 0.0001978 49.0
YYD1_k127_3796683_2 HD domain K13815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 417.0
YYD1_k127_3796683_3 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006181 304.0
YYD1_k127_3796683_4 Pfam Enoyl-CoA hydratase isomerase K13816 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006256 305.0
YYD1_k127_3796683_5 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 294.0
YYD1_k127_3796683_6 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002654 276.0
YYD1_k127_3796683_7 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000001454 214.0
YYD1_k127_3796683_8 AIR synthase related protein domain protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000008944 201.0
YYD1_k127_3796683_9 TIGRFAM DnaA regulatory inactivator Hda K10763 - - 0.000000000000000000000000000000000000000000000000006918 187.0
YYD1_k127_3800884_0 Amidohydrolase family - - - 1.252e-253 793.0
YYD1_k127_3805280_0 FAD linked oxidase domain protein K06911 - - 0.0 1164.0
YYD1_k127_3805280_1 COG0501 Zn-dependent protease with chaperone function - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 379.0
YYD1_k127_3805280_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 360.0
YYD1_k127_3805280_3 luciferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 345.0
YYD1_k127_3805280_4 COG0501 Zn-dependent protease with chaperone function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006173 325.0
YYD1_k127_3805280_5 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001804 286.0
YYD1_k127_3805280_6 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000001496 175.0
YYD1_k127_3805280_7 LemA family K03744 - - 0.0000000000000000000000000001311 124.0
YYD1_k127_3805280_8 - - - - 0.000000000000000004404 90.0
YYD1_k127_3805280_9 ankyrin repeat K15503 - - 0.0000000001142 74.0
YYD1_k127_3818191_0 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 439.0
YYD1_k127_3818191_1 Belongs to the ABC transporter superfamily K02031,K02032,K13896 - - 0.00000000000000000000000000000000000000000000000001179 183.0
YYD1_k127_3819225_0 UDP-glucose 4-epimerase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 415.0
YYD1_k127_3819225_1 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000002087 219.0
YYD1_k127_3819225_2 - - - - 0.00000000000000000000189 95.0
YYD1_k127_3819225_3 - - - - 0.000000000000002114 77.0
YYD1_k127_3819225_4 Trap-type c4-dicarboxylate transport system, small permease component K11689 - - 0.00000000567 62.0
YYD1_k127_3819225_5 - - - - 0.000404 47.0
YYD1_k127_3828242_0 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003962 392.0
YYD1_k127_3828242_1 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004496 370.0
YYD1_k127_3828242_2 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001549 281.0
YYD1_k127_3828242_3 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000004976 106.0
YYD1_k127_3828242_4 Psort location CytoplasmicMembrane, score - - - 0.0000000006217 67.0
YYD1_k127_3834926_0 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008134 448.0
YYD1_k127_3834926_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 323.0
YYD1_k127_3834926_2 Asp Glu hydantoin racemase - - - 0.000000000000000001129 89.0
YYD1_k127_3837402_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 610.0
YYD1_k127_3837402_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 344.0
YYD1_k127_3837402_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001307 246.0
YYD1_k127_3837402_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004073 241.0
YYD1_k127_3837402_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000000000002476 227.0
YYD1_k127_3837402_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000775 166.0
YYD1_k127_3839607_0 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 576.0
YYD1_k127_3839607_1 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005741 350.0
YYD1_k127_3839607_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 325.0
YYD1_k127_3839607_3 response regulator K07715 - - 0.000000000000000000000000000000000000000000000000000000000000658 220.0
YYD1_k127_3839607_4 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000001881 180.0
YYD1_k127_3842517_0 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 381.0
YYD1_k127_3842517_1 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000005926 228.0
YYD1_k127_3842517_2 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000001262 177.0
YYD1_k127_3842517_3 MarC family integral membrane protein K05595 - - 0.0000000000000000000000000000000000000000009187 172.0
YYD1_k127_3842517_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0006651 42.0
YYD1_k127_3865768_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 602.0
YYD1_k127_3865768_1 Secretin and TonB N terminus short domain K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005494 599.0
YYD1_k127_3865768_2 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 361.0
YYD1_k127_3865768_3 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000001586 172.0
YYD1_k127_3865768_4 - - - - 0.0000000000000000000000000000000000823 143.0
YYD1_k127_3865768_5 - - - - 0.000000000000000002612 91.0
YYD1_k127_3865768_6 carbon utilization - - - 0.00000000000157 80.0
YYD1_k127_3865768_7 - - - - 0.0000000001871 68.0
YYD1_k127_386906_0 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 4.951e-228 715.0
YYD1_k127_386906_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 508.0
YYD1_k127_386906_10 COG0457 FOG TPR repeat - - - 0.00000002525 55.0
YYD1_k127_386906_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003165 502.0
YYD1_k127_386906_3 Fatty acid desaturase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 346.0
YYD1_k127_386906_4 GHMP kinases N terminal domain K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009763 299.0
YYD1_k127_386906_5 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001746 249.0
YYD1_k127_386906_6 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000001221 224.0
YYD1_k127_386906_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000564 134.0
YYD1_k127_386906_8 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.0000000000000000000000007226 111.0
YYD1_k127_386906_9 Tripartite tricarboxylate transporter family receptor - - - 0.00000000008091 64.0
YYD1_k127_3871002_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 7.258e-246 777.0
YYD1_k127_3871002_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.466e-231 727.0
YYD1_k127_3871002_2 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000005491 213.0
YYD1_k127_3871002_3 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.000000000000000000000000000000001046 141.0
YYD1_k127_3875394_0 transporter K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 549.0
YYD1_k127_3875394_1 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 483.0
YYD1_k127_3875394_2 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000007014 149.0
YYD1_k127_3895304_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01584 - 4.1.1.19 0.0 1063.0
YYD1_k127_3895304_1 Predicted Permease Membrane Region - - - 8.871e-236 739.0
YYD1_k127_3895304_2 protein conserved in bacteria K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005466 310.0
YYD1_k127_3897275_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 4.268e-218 698.0
YYD1_k127_3897275_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000001622 223.0
YYD1_k127_3899738_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 1.971e-284 889.0
YYD1_k127_3899738_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 535.0
YYD1_k127_3899738_2 PFAM ATPase family associated with various cellular activities (AAA) K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 334.0
YYD1_k127_3899738_3 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002659 274.0
YYD1_k127_3899738_4 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000001296 183.0
YYD1_k127_3899738_5 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.0000000000000000000000000000000000000005572 153.0
YYD1_k127_3899738_6 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000001929 141.0
YYD1_k127_3940208_0 Transport of potassium into the cell K03549 - - 1.395e-237 747.0
YYD1_k127_3940208_1 GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 524.0
YYD1_k127_3940208_2 Metal dependent phosphohydrolases with conserved 'HD' motif. K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009922 313.0
YYD1_k127_3960628_0 Heat shock 70 kDa protein K04043 - - 1.63e-322 997.0
YYD1_k127_3960628_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 597.0
YYD1_k127_3960628_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 569.0
YYD1_k127_3960628_3 AsmA family K07289 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 383.0
YYD1_k127_3960628_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000001367 153.0
YYD1_k127_3989401_0 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000003301 144.0
YYD1_k127_3989401_1 Gram-negative porin K03285 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000008412 110.0
YYD1_k127_3989401_2 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.00000000000000005742 80.0
YYD1_k127_399592_0 Outer membrane protein transport protein (OMPP1/FadL/TodX) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 511.0
YYD1_k127_399592_1 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 494.0
YYD1_k127_399592_2 DsrE/DsrF/DrsH-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001115 265.0
YYD1_k127_399592_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008413 245.0
YYD1_k127_399592_4 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000000000000002349 91.0
YYD1_k127_399592_5 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000001474 80.0
YYD1_k127_400838_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 1.116e-221 711.0
YYD1_k127_400838_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 2.022e-202 646.0
YYD1_k127_400838_2 transcriptional - - - 0.0000000000000000000000118 105.0
YYD1_k127_4027528_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.648e-248 774.0
YYD1_k127_4027528_1 signal peptide peptidase K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003659 381.0
YYD1_k127_4027528_2 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 356.0
YYD1_k127_4027528_3 HAD-superfamily hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000001784 241.0
YYD1_k127_4027528_4 rieske 2fe-2s - - - 0.0000000000000000000000000000000001035 145.0
YYD1_k127_4055304_0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K05921,K18336 - 4.1.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 365.0
YYD1_k127_4055304_1 ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000006001 203.0
YYD1_k127_4055304_2 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000004447 148.0
YYD1_k127_4055304_3 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000006907 135.0
YYD1_k127_4066065_0 Metallopeptidase family M24 - - - 1.579e-206 652.0
YYD1_k127_4066065_1 Amidohydrolase family - - - 3.093e-196 629.0
YYD1_k127_4066065_10 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000007857 92.0
YYD1_k127_4066065_2 Belongs to the LDH2 MDH2 oxidoreductase family K13574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007736 392.0
YYD1_k127_4066065_3 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 339.0
YYD1_k127_4066065_4 6-phosphogluconate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 340.0
YYD1_k127_4066065_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 300.0
YYD1_k127_4066065_6 Belongs to the LDH2 MDH2 oxidoreductase family K00073 - 1.1.1.350 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001601 287.0
YYD1_k127_4066065_7 Alcohol dehydrogenase GroES-like domain K00001,K00055,K00121 - 1.1.1.1,1.1.1.284,1.1.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000002639 263.0
YYD1_k127_4066065_8 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000002656 231.0
YYD1_k127_4066065_9 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000006937 170.0
YYD1_k127_4070162_0 PFAM Rieske 2Fe-2S domain protein K18068 - 1.14.12.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 515.0
YYD1_k127_4070162_1 Epoxide hydrolase N terminus K01253 - 3.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 470.0
YYD1_k127_4070162_2 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 373.0
YYD1_k127_4070162_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006937 280.0
YYD1_k127_4070162_4 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000001751 250.0
YYD1_k127_4070162_5 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic K02051 - - 0.0000000000000000000000000000000000000000000000000000000000003464 217.0
YYD1_k127_4070162_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000002093 206.0
YYD1_k127_4070162_7 Water Stress and Hypersensitive response - - - 0.000000000000000000000000000000000000000002556 160.0
YYD1_k127_4070162_8 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000002452 158.0
YYD1_k127_4070162_9 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000008985 83.0
YYD1_k127_4078003_0 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 436.0
YYD1_k127_4078003_1 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 426.0
YYD1_k127_4078003_2 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 405.0
YYD1_k127_4078003_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 322.0
YYD1_k127_4078003_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004852 278.0
YYD1_k127_4078003_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000003915 235.0
YYD1_k127_4078003_6 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000006128 151.0
YYD1_k127_4078003_7 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000005518 147.0
YYD1_k127_4078003_8 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000004239 142.0
YYD1_k127_4078003_9 Alpha beta-hydrolase K01253 - 3.3.2.9 0.00000001359 60.0
YYD1_k127_4086140_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002294 502.0
YYD1_k127_4086140_1 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 493.0
YYD1_k127_4086140_10 Nucleoside diphosphate kinase K06140 - - 0.000000000000002068 82.0
YYD1_k127_4086140_11 (Hpt) domain - - - 0.00000008388 60.0
YYD1_k127_4086140_12 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0003225 49.0
YYD1_k127_4086140_2 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 488.0
YYD1_k127_4086140_3 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 436.0
YYD1_k127_4086140_4 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 414.0
YYD1_k127_4086140_5 Dehydrogenase E1 component K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008278 344.0
YYD1_k127_4086140_6 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004654 256.0
YYD1_k127_4086140_7 Dioxygenase - - - 0.0000000000000000000000000000000000000000000000000001899 195.0
YYD1_k127_4086140_8 Metal binding domain of Ada K00567,K10778 - 2.1.1.63 0.00000000000000000000000000000000000001139 150.0
YYD1_k127_4086140_9 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000005697 91.0
YYD1_k127_4090573_0 Bacterial DNA polymerase III alpha subunit K14162 - 2.7.7.7 1.688e-303 943.0
YYD1_k127_4090573_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000002408 102.0
YYD1_k127_4090573_2 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000004059 87.0
YYD1_k127_4090573_3 Hpt domain - - - 0.0000000000000001225 83.0
YYD1_k127_4091679_0 Belongs to the GcvT family K00302 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.5.3.1 5.791e-262 822.0
YYD1_k127_4091679_1 Sarcosine oxidase beta subunit family K00303 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.5.3.1 0.0000000000000000000000000000000000000000000000000009007 183.0
YYD1_k127_4091679_2 Sarcosine oxidase, delta subunit family K00304 - 1.5.3.1 0.00000000000000000000000000000000000005034 143.0
YYD1_k127_4099383_0 Methyltransferase, type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 358.0
YYD1_k127_4099383_1 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001008 272.0
YYD1_k127_4099383_2 Putative methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000386 231.0
YYD1_k127_4099383_3 Glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000000000000000000565 205.0
YYD1_k127_4099383_4 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000009262 210.0
YYD1_k127_4099383_5 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000001834 197.0
YYD1_k127_4099383_6 Cupin domain - - - 0.0000000000000000000000000000000000000000000794 171.0
YYD1_k127_4099383_7 Cupin 2, conserved barrel domain protein - - - 0.00000000000003096 73.0
YYD1_k127_4099614_0 Bacterial protein of unknown function (DUF839) K07093 - - 2.267e-221 703.0
YYD1_k127_4099614_1 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000219 250.0
YYD1_k127_4099614_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000002661 246.0
YYD1_k127_4099614_3 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000002246 192.0
YYD1_k127_4107060_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 1.15e-225 709.0
YYD1_k127_4107060_1 PFAM type I phosphodiesterase nucleotide pyrophosphatase K19670 - 3.11.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 602.0
YYD1_k127_4107060_2 FAD dependent oxidoreductase central domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000308 228.0
YYD1_k127_4107060_3 Phosphonate utilization associated transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000001036 226.0
YYD1_k127_4108579_0 Methionine synthase K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000854 426.0
YYD1_k127_4108579_1 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 357.0
YYD1_k127_4108579_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003242 283.0
YYD1_k127_4108579_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000004049 78.0
YYD1_k127_4109703_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 3.163e-264 824.0
YYD1_k127_4109703_1 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 4.209e-228 734.0
YYD1_k127_4109703_10 OsmC-like protein - - - 0.00000000000000000000000000000000000001187 150.0
YYD1_k127_4109703_11 Transcriptional regulator - - - 0.00000000000000000000000000000000000006391 145.0
YYD1_k127_4109703_12 thiolester hydrolase activity K17362 - - 0.00000000000000000000000000002788 125.0
YYD1_k127_4109703_13 Thioesterase-like superfamily K07107 - - 0.000000000000001581 88.0
YYD1_k127_4109703_14 Fe-S protein K06938 - - 0.000000000000002689 76.0
YYD1_k127_4109703_15 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000435 66.0
YYD1_k127_4109703_2 poly(R)-hydroxyalkanoic acid synthase K03821 - - 6.316e-211 664.0
YYD1_k127_4109703_3 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 1.685e-197 621.0
YYD1_k127_4109703_4 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 603.0
YYD1_k127_4109703_5 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 495.0
YYD1_k127_4109703_6 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 451.0
YYD1_k127_4109703_7 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 357.0
YYD1_k127_4109703_8 COG1024 Enoyl-CoA hydratase carnithine racemase K13766 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 299.0
YYD1_k127_4109703_9 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000008231 156.0
YYD1_k127_4124609_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.378e-253 794.0
YYD1_k127_4124609_1 Sarcosine oxidase beta subunit family K00303 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.5.3.1 2.312e-213 678.0
YYD1_k127_4124609_10 SCO1/SenC K07152 - - 0.000000000000000000000000000000000000000000000000000001347 199.0
YYD1_k127_4124609_11 VirC1 protein K03496 - - 0.0000000000000000000000000000000000000005692 157.0
YYD1_k127_4124609_12 Sarcosine oxidase, delta subunit family K00304 - 1.5.3.1 0.0000000000000000000000000000000009118 132.0
YYD1_k127_4124609_13 Tellurite resistance protein TerB - - - 0.0000000000000000001554 93.0
YYD1_k127_4124609_14 Peptidoglycan-binding domain 1 protein K07273 - - 0.0000000001218 66.0
YYD1_k127_4124609_2 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 544.0
YYD1_k127_4124609_3 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 479.0
YYD1_k127_4124609_4 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009535 389.0
YYD1_k127_4124609_5 Isochorismatase family K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 380.0
YYD1_k127_4124609_6 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 361.0
YYD1_k127_4124609_7 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002354 344.0
YYD1_k127_4124609_8 COG0410 ABC-type branched-chain amino acid transport systems ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001217 271.0
YYD1_k127_4124609_9 PFAM 4-vinyl reductase, 4VR - - - 0.00000000000000000000000000000000000000000000000000000003013 204.0
YYD1_k127_4129000_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 592.0
YYD1_k127_4129000_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 508.0
YYD1_k127_4129000_2 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 429.0
YYD1_k127_4129000_3 PFAM aminotransferase, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009132 406.0
YYD1_k127_4129000_4 Uracil DNA glycosylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001804 279.0
YYD1_k127_4129000_5 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000001775 227.0
YYD1_k127_4129000_6 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.000000000000000000000000000000000000000158 164.0
YYD1_k127_4129000_7 alpha beta - - - 0.00000000000000000000000000000000003071 147.0
YYD1_k127_4130433_0 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 295.0
YYD1_k127_4130433_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 287.0
YYD1_k127_4130433_2 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 287.0
YYD1_k127_4130433_3 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000000007662 190.0
YYD1_k127_4130433_4 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000005534 86.0
YYD1_k127_41425_0 Aldehyde dehydrogenase family K02618,K15514 - 1.2.1.77,1.2.1.91,3.3.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009912 575.0
YYD1_k127_41425_1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 424.0
YYD1_k127_41425_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 340.0
YYD1_k127_41425_3 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 325.0
YYD1_k127_41425_4 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000002312 180.0
YYD1_k127_4206620_0 Tripartite tricarboxylate transporter TctA family - - - 4.11e-199 631.0
YYD1_k127_4206620_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 484.0
YYD1_k127_4206620_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000482 278.0
YYD1_k127_4206620_3 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000002973 239.0
YYD1_k127_4206620_4 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000004617 130.0
YYD1_k127_4239937_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000528 352.0
YYD1_k127_4239937_1 Protein of unknown function (DUF445) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007154 337.0
YYD1_k127_4239937_2 mandelate racemase muconate lactonizing K20023 - 4.2.1.156,4.2.1.42 0.00000000000000000000000000000000000000000000000000000000008576 217.0
YYD1_k127_4239937_3 - - - - 0.0000000000000000000000000000000000000000000000000000003025 203.0
YYD1_k127_4239937_4 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.00000000000000000000000000000000000345 151.0
YYD1_k127_4239937_5 UPF0391 membrane protein - - - 0.00000000001345 66.0
YYD1_k127_4244010_0 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 475.0
YYD1_k127_4244010_1 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000605 412.0
YYD1_k127_4244010_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000005363 201.0
YYD1_k127_4271632_0 Amidohydrolase K03392,K10220 - 4.1.1.45,4.2.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004391 600.0
YYD1_k127_4271632_1 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 541.0
YYD1_k127_4271632_2 - - - - 0.000000000000000000000000000000000000001501 149.0
YYD1_k127_4271632_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000347 149.0
YYD1_k127_4271632_4 Putative beta-barrel porin 2 - - - 0.00007865 48.0
YYD1_k127_4271632_5 EF hand - - - 0.0001792 48.0
YYD1_k127_4271632_6 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.0007624 50.0
YYD1_k127_4332658_0 FAD dependent oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004224 537.0
YYD1_k127_4332658_1 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 389.0
YYD1_k127_4332658_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 373.0
YYD1_k127_4332658_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000009022 253.0
YYD1_k127_4332658_4 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000005395 229.0
YYD1_k127_4339739_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1247.0
YYD1_k127_4339739_1 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 4.572e-254 793.0
YYD1_k127_4339739_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000148 83.0
YYD1_k127_4339739_11 - - - - 0.00000001807 57.0
YYD1_k127_4339739_12 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000009414 53.0
YYD1_k127_4339739_13 DsrE/DsrF-like family - - - 0.00004023 50.0
YYD1_k127_4339739_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 6.731e-216 675.0
YYD1_k127_4339739_3 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 527.0
YYD1_k127_4339739_4 extracellular solute-binding protein, family 1 K02020,K22003 - 5.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 326.0
YYD1_k127_4339739_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001751 270.0
YYD1_k127_4339739_6 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000002095 236.0
YYD1_k127_4339739_7 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000000000005734 224.0
YYD1_k127_4339739_8 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000007383 126.0
YYD1_k127_4339739_9 Forkhead associated domain - - - 0.000000000000000000000000001554 123.0
YYD1_k127_4346090_0 AcyL-CoA dehydrogenase K06445 - - 2.5e-323 1008.0
YYD1_k127_4346090_1 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 1.413e-235 746.0
YYD1_k127_4346090_2 Belongs to the thiolase family K00626 - 2.3.1.9 1.032e-203 641.0
YYD1_k127_4346090_3 Thioesterase superfamily K10806 - - 0.000000000000000000000000000000000000000000000000007785 183.0
YYD1_k127_4346090_4 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000005563 173.0
YYD1_k127_4347823_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly - - - 0.0 1076.0
YYD1_k127_435380_0 COG0210 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004691 379.0
YYD1_k127_435380_1 ABC transporter substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001377 254.0
YYD1_k127_435380_2 Protein of unknown function (DUF1643) - - - 0.0000000000000000000000000000000000000000000000000000002635 199.0
YYD1_k127_435380_3 endonuclease - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000004574 133.0
YYD1_k127_435380_4 Uncharacterized protein conserved in bacteria (DUF2171) - - - 0.000000000000000000004102 96.0
YYD1_k127_4362651_0 III protein, CoA-transferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 543.0
YYD1_k127_4362651_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 530.0
YYD1_k127_4362651_10 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001409 232.0
YYD1_k127_4362651_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000001218 224.0
YYD1_k127_4362651_12 High-affinity branched-chain amino acid transport protein (ABC superfamily K01996 - - 0.00000000000000000000000000000000000000000000000000000000002615 215.0
YYD1_k127_4362651_13 Flavodoxin-like fold K19784 - - 0.00000000000000000000000000000000000000000000000000132 188.0
YYD1_k127_4362651_14 4-carboxymuconolactone decarboxylase K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000001069 174.0
YYD1_k127_4362651_15 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000003745 110.0
YYD1_k127_4362651_16 Chromate resistance - - - 0.0000000000000001272 81.0
YYD1_k127_4362651_17 OmpA-like transmembrane domain - - - 0.00000000000009695 80.0
YYD1_k127_4362651_2 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 452.0
YYD1_k127_4362651_3 Protein conserved in bacteria K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 422.0
YYD1_k127_4362651_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009748 387.0
YYD1_k127_4362651_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 357.0
YYD1_k127_4362651_6 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 350.0
YYD1_k127_4362651_7 Belongs to the enoyl-CoA hydratase isomerase family K01692,K11264 - 4.1.1.41,4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 328.0
YYD1_k127_4362651_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000004013 240.0
YYD1_k127_4362651_9 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000001159 238.0
YYD1_k127_4365326_0 CoA binding domain K09181 - - 1.312e-210 675.0
YYD1_k127_4365326_1 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000001753 164.0
YYD1_k127_4366896_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 324.0
YYD1_k127_4366896_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 290.0
YYD1_k127_4366896_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000303 284.0
YYD1_k127_4366896_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000004283 160.0
YYD1_k127_4366896_4 Preprotein translocase subunit SecG K03075 - - 0.00000000000000000000000008044 113.0
YYD1_k127_4368950_0 NADH:flavin oxidoreductase / NADH oxidase family K00354,K09461 - 1.14.13.40,1.6.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 426.0
YYD1_k127_4368950_1 Major facilitator superfamily - - - 0.000000000000000000000000000000000000005149 151.0
YYD1_k127_4368950_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000003305 110.0
YYD1_k127_4373902_0 III protein, CoA-transferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 503.0
YYD1_k127_4373902_1 PFAM CHRD domain containing protein - - - 0.00000000000000000000000000000000573 134.0
YYD1_k127_4373902_2 protein conserved in bacteria - - - 0.0000000000000000000000005288 111.0
YYD1_k127_4373902_3 Protein conserved in bacteria - - - 0.0000000000000000006598 89.0
YYD1_k127_4374971_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 1.104e-244 769.0
YYD1_k127_4374971_1 Type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 546.0
YYD1_k127_4374971_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000176 193.0
YYD1_k127_4374971_3 AAA domain - - - 0.000000000000000005547 91.0
YYD1_k127_4374971_4 Type II secretion system K02653 - - 0.000000002917 60.0
YYD1_k127_4376702_0 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006623 462.0
YYD1_k127_4376702_1 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 398.0
YYD1_k127_4376702_2 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 316.0
YYD1_k127_4376702_3 transcriptional regulator, ArsR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002517 267.0
YYD1_k127_4376702_4 Glycine cleavage H-protein K02437 - - 0.0000000000000000000000000000000000000000000000000000000000000000001998 233.0
YYD1_k127_4376702_5 DsrE/DsrF-like family K06039 - - 0.00000000000000000000000000000000000000000001374 164.0
YYD1_k127_4376702_6 - - - - 0.0000000000000000000000000000000263 139.0
YYD1_k127_4376702_7 transcriptional regulators K22042 - - 0.0000000000000000000000001766 111.0
YYD1_k127_4376702_8 Alpha/beta hydrolase family - - - 0.00001077 50.0
YYD1_k127_4381959_0 AMP-dependent synthetase - - - 2.443e-235 744.0
YYD1_k127_4381959_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 597.0
YYD1_k127_4381959_2 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 584.0
YYD1_k127_4381959_3 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 560.0
YYD1_k127_4381959_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5,6.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006145 501.0
YYD1_k127_4381959_5 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003263 255.0
YYD1_k127_4381959_6 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000000000000000000000000000000000000000004242 227.0
YYD1_k127_4393948_0 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 430.0
YYD1_k127_4393948_1 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 314.0
YYD1_k127_4393948_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002036 285.0
YYD1_k127_4393948_3 Binding-protein-dependent transport system inner membrane component K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002807 286.0
YYD1_k127_4393948_4 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000008619 243.0
YYD1_k127_4393948_5 Tripartite tricarboxylate transporter family receptor - - - 0.0000001559 62.0
YYD1_k127_4398964_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 2.908e-232 724.0
YYD1_k127_4398964_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 544.0
YYD1_k127_4398964_10 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005452 252.0
YYD1_k127_4398964_11 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001678 241.0
YYD1_k127_4398964_12 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000002198 228.0
YYD1_k127_4398964_13 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000294 228.0
YYD1_k127_4398964_14 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000003493 224.0
YYD1_k127_4398964_15 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000007157 233.0
YYD1_k127_4398964_16 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000000000000000000000001495 203.0
YYD1_k127_4398964_17 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000001774 185.0
YYD1_k127_4398964_18 binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000000000005605 186.0
YYD1_k127_4398964_19 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000007663 151.0
YYD1_k127_4398964_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 538.0
YYD1_k127_4398964_20 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000007351 135.0
YYD1_k127_4398964_21 Ribosomal protein L30 K02907 - - 0.000000000000000002806 87.0
YYD1_k127_4398964_22 Ribosomal protein L36 K02919 - - 0.0000000000001808 70.0
YYD1_k127_4398964_3 Gentisate 1,2-dioxygenase K00450 - 1.13.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007745 446.0
YYD1_k127_4398964_4 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 446.0
YYD1_k127_4398964_5 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 361.0
YYD1_k127_4398964_6 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 331.0
YYD1_k127_4398964_7 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 302.0
YYD1_k127_4398964_8 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002264 277.0
YYD1_k127_4398964_9 esterase K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005517 284.0
YYD1_k127_4402361_0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 581.0
YYD1_k127_4402361_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 570.0
YYD1_k127_4402361_2 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 550.0
YYD1_k127_4402361_3 PFAM peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 354.0
YYD1_k127_4402361_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 347.0
YYD1_k127_4402361_5 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002363 274.0
YYD1_k127_4402361_6 Required for insertion of 4Fe-4S clusters K15724 - - 0.000000000000000000000000000000000000000000000000000000000000002984 218.0
YYD1_k127_4402361_7 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000002246 138.0
YYD1_k127_4402361_8 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000271 98.0
YYD1_k127_4402361_9 Glycoprotease family K14742 - - 0.0000000000000000001182 96.0
YYD1_k127_4446496_0 Periplasmic domain of Sensor histidine kinase RisS K07638 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 385.0
YYD1_k127_4446496_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 331.0
YYD1_k127_4446496_2 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000334 231.0
YYD1_k127_4452040_0 Adenylosuccinate lyase C-terminus K01857 - 5.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 355.0
YYD1_k127_4452040_1 COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000002038 245.0
YYD1_k127_4452040_2 Protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.0000000000000000000000000000000000000000000000002417 179.0
YYD1_k127_4452040_3 Thioesterase superfamily - - - 0.0000000000000000000000006948 110.0
YYD1_k127_4466514_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 474.0
YYD1_k127_4466514_1 - K11477 - - 0.00000000000000000000000000000000000000000000000000005283 190.0
YYD1_k127_4466514_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000002515 174.0
YYD1_k127_4466514_3 PAS fold - - - 0.000000000000000000000000000000000002272 153.0
YYD1_k127_4466514_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000002503 150.0
YYD1_k127_4466514_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000003211 119.0
YYD1_k127_4470212_0 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K05712 - 1.14.13.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 417.0
YYD1_k127_4470212_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 370.0
YYD1_k127_4470212_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000002184 169.0
YYD1_k127_4485767_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2238.0
YYD1_k127_4485767_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1025.0
YYD1_k127_4485767_2 MltA-interacting protein MipA - - - 0.00000000000000001076 83.0
YYD1_k127_4496665_0 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components K06147 - - 1.68e-239 757.0
YYD1_k127_4496665_1 AcyL-CoA dehydrogenase K06445 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 405.0
YYD1_k127_4496665_2 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 301.0
YYD1_k127_4496665_3 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009082 284.0
YYD1_k127_4496665_4 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000005937 223.0
YYD1_k127_4498441_0 TRAP transporter, 4TM 12TM fusion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 535.0
YYD1_k127_4498441_1 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 503.0
YYD1_k127_4498441_2 Helix-turn-helix domain, rpiR family - - - 0.000000000000000000000000000000000009452 147.0
YYD1_k127_4498441_3 Domain of unknown function (DUF4387) - - - 0.00000000000000000000000000000000003678 147.0
YYD1_k127_4498441_4 NMT1-like family - - - 0.0000000000000000000007004 111.0
YYD1_k127_4498441_5 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000005419 66.0
YYD1_k127_4504968_0 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007081 587.0
YYD1_k127_4504968_1 NnrS protein K07234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008596 358.0
YYD1_k127_4504968_2 CRP FNR family K21563 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000702 254.0
YYD1_k127_4504968_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21563 - - 0.0000000000000000000000000000000000000000000000000000000215 208.0
YYD1_k127_4504968_4 - - - - 0.00000000000000000000000000000000000000000000000000000003916 207.0
YYD1_k127_4504968_5 - - - - 0.00000000000000000000000000000000000000002147 160.0
YYD1_k127_4504968_6 Glyoxalase-like domain K01759,K08234 - 4.4.1.5 0.0000000000000000000000000000004853 128.0
YYD1_k127_4504968_7 Cytochrome c K08738 - - 0.000000000000000000000000001275 119.0
YYD1_k127_4504968_8 Uncharacterized conserved protein (DUF2249) - - - 0.000000004589 64.0
YYD1_k127_4506462_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 5.152e-208 663.0
YYD1_k127_4506462_1 3HB-oligomer hydrolase (3HBOH) K07518 - 3.1.1.22 8.322e-203 652.0
YYD1_k127_4506462_2 Belongs to the peptidase S1C family K04691,K04772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 491.0
YYD1_k127_4506462_3 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000001011 258.0
YYD1_k127_4506462_4 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.0000000000000000000000000001637 115.0
YYD1_k127_4506462_5 PFAM Cytochrome C1 K00413 - - 0.00000000000000004457 89.0
YYD1_k127_4520311_0 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 1.618e-306 946.0
YYD1_k127_4520311_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002713 596.0
YYD1_k127_4520311_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006921 551.0
YYD1_k127_4520311_3 Permease YjgP YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 398.0
YYD1_k127_4520311_4 Permease, YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 392.0
YYD1_k127_4520311_5 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001865 259.0
YYD1_k127_4520311_6 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000003838 256.0
YYD1_k127_4520311_7 RDD family - - - 0.00000000000000000000000001488 115.0
YYD1_k127_4520311_8 Protein of unknown function (DUF3106) - - - 0.0000000000000000000000001953 112.0
YYD1_k127_4520311_9 Protein of unknown function (DUF3619) - - - 0.00000000000006308 79.0
YYD1_k127_4619489_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 531.0
YYD1_k127_4619489_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 409.0
YYD1_k127_4619489_2 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007787 352.0
YYD1_k127_4619489_3 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 366.0
YYD1_k127_4619489_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000499 356.0
YYD1_k127_4619489_5 PFAM amidohydrolase 2 K03392 - 4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 331.0
YYD1_k127_4619489_6 COG0411 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.000000000000000000000000000000000004313 155.0
YYD1_k127_4619489_7 Voltage-dependent anion channel K03304 - - 0.00000000000000000000000000000000005595 146.0
YYD1_k127_4646164_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K04090 - 1.2.7.8 0.0 1217.0
YYD1_k127_4646164_1 COG1943 Transposase and inactivated derivatives K07491 - - 0.000000004404 60.0
YYD1_k127_4647432_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 7.146e-318 986.0
YYD1_k127_4647432_1 Protein of unknown function (DUF3141) - - - 7.62e-293 917.0
YYD1_k127_4647432_2 phosphate K00625 - 2.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 428.0
YYD1_k127_4647432_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 425.0
YYD1_k127_4647432_4 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001535 273.0
YYD1_k127_4647432_5 - - - - 0.00000000000002762 75.0
YYD1_k127_4648567_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 592.0
YYD1_k127_4648567_1 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004877 554.0
YYD1_k127_4648567_2 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 - 1.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007164 402.0
YYD1_k127_4648567_3 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0000000000000000000000000007976 116.0
YYD1_k127_4650161_0 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 465.0
YYD1_k127_4650161_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000943 278.0
YYD1_k127_4650161_2 KR domain K00019 - 1.1.1.30 0.00000000000000000000000000000000000000000000000000000000000005621 218.0
YYD1_k127_4650161_3 PFAM Short-chain dehydrogenase reductase SDR K00059,K03366 - 1.1.1.100,1.1.1.304,1.1.1.76 0.000000000000000000000000000000000000000000000000000000001224 209.0
YYD1_k127_4650161_4 - - - - 0.00000000000000000000000000000000000000000000009995 174.0
YYD1_k127_4650161_5 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000004229 176.0
YYD1_k127_4651590_0 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 4.856e-198 630.0
YYD1_k127_4651590_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000004794 198.0
YYD1_k127_4651590_2 integral membrane protein K02221 - - 0.000000000000000000000000000000000000000004482 162.0
YYD1_k127_4651590_3 Belongs to the UPF0235 family K09131 - - 0.00000000000000002165 91.0
YYD1_k127_4652453_0 type II secretion system protein K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 609.0
YYD1_k127_4652453_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 587.0
YYD1_k127_4652453_10 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000008507 124.0
YYD1_k127_4652453_11 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000006113 109.0
YYD1_k127_4652453_12 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000000006655 76.0
YYD1_k127_4652453_2 Major facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009286 418.0
YYD1_k127_4652453_3 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004081 327.0
YYD1_k127_4652453_4 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 335.0
YYD1_k127_4652453_5 CBS domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 325.0
YYD1_k127_4652453_6 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005193 266.0
YYD1_k127_4652453_7 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000004543 225.0
YYD1_k127_4652453_8 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000009208 216.0
YYD1_k127_4652453_9 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000000000000000000000000001169 159.0
YYD1_k127_4679680_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.0 1122.0
YYD1_k127_4679680_1 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 555.0
YYD1_k127_4679680_2 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 431.0
YYD1_k127_4679680_3 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 310.0
YYD1_k127_4679680_4 low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000000000000000002046 229.0
YYD1_k127_4679680_5 Regulatory protein ArsR K03892 - - 0.00000000000000000000000000000001965 128.0
YYD1_k127_4679680_6 PFAM cytoplasmic chaperone TorD family protein - - - 0.00000000000000000000000006583 115.0
YYD1_k127_4679680_7 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000006931 94.0
YYD1_k127_4679680_8 Copper binding periplasmic protein CusF - - - 0.00006179 45.0
YYD1_k127_4693501_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.004e-212 667.0
YYD1_k127_4693501_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007378 363.0
YYD1_k127_4693501_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000001634 202.0
YYD1_k127_4693501_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000006929 167.0
YYD1_k127_4694117_0 B12 binding domain K00548 - 2.1.1.13 0.0 1196.0
YYD1_k127_4694117_1 ammonium transporter K03320 - - 2.948e-210 663.0
YYD1_k127_4694117_10 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000000000000005565 199.0
YYD1_k127_4694117_11 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000005357 126.0
YYD1_k127_4694117_12 Thioesterase superfamily - - - 0.000000000000000000000000002221 116.0
YYD1_k127_4694117_13 Membrane fusogenic activity K09806 - - 0.000000000000000008997 87.0
YYD1_k127_4694117_14 oxidoreductase FAD NAD(P)-binding domain protein K14581 - 1.18.1.7 0.0000000000000001258 84.0
YYD1_k127_4694117_2 Magnesium chelatase, subunit ChlI K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 450.0
YYD1_k127_4694117_3 Protocatechuate 3,4-dioxygenase K00449 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 359.0
YYD1_k127_4694117_4 Catalyzes the cycloisomerization of cis,cis-muconate K01857 - 5.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 323.0
YYD1_k127_4694117_5 PFAM fumarylacetoacetate (FAA) hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001325 293.0
YYD1_k127_4694117_6 AMP-binding enzyme C-terminal domain K04110,K20458 - 6.2.1.25,6.2.1.27,6.2.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001377 296.0
YYD1_k127_4694117_7 TIGRFAM maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001181 261.0
YYD1_k127_4694117_8 Protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000167 232.0
YYD1_k127_4694117_9 Bacterial protein of unknown function (Gcw_chp) - - - 0.000000000000000000000000000000000000000000000000000000000003152 218.0
YYD1_k127_4699724_0 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 475.0
YYD1_k127_4699724_1 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 388.0
YYD1_k127_4699724_2 membrane protein TerC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008094 286.0
YYD1_k127_4699724_3 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001779 280.0
YYD1_k127_4699724_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000002158 194.0
YYD1_k127_4699724_5 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.00000000000000000000000000003576 126.0
YYD1_k127_4699724_6 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 0.00000000000000003206 83.0
YYD1_k127_4699724_7 Universal stress protein family - - - 0.000000000007168 70.0
YYD1_k127_4699724_8 Universal stress protein - - - 0.0000008463 58.0
YYD1_k127_4723201_0 NADPH quinone oxidoreductase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 463.0
YYD1_k127_4723201_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002843 274.0
YYD1_k127_4723201_2 NMT1-like family K07080 - - 0.000000000000000000000009477 114.0
YYD1_k127_4723201_3 Tautomerase enzyme - - - 0.00000007341 54.0
YYD1_k127_4723201_4 Protein of unknown function (DUF2917) - - - 0.000355 46.0
YYD1_k127_4742471_0 PFAM amidohydrolase K01464,K01466 - 3.5.2.2,3.5.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 592.0
YYD1_k127_4742471_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 414.0
YYD1_k127_4742471_2 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004604 291.0
YYD1_k127_4742471_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001255 251.0
YYD1_k127_4742471_4 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005385 257.0
YYD1_k127_4742471_5 Amidase - - - 0.000000000000000000000000000000000000000000000000000000000000001881 239.0
YYD1_k127_476281_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 2.073e-313 968.0
YYD1_k127_476281_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 434.0
YYD1_k127_476281_2 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004479 360.0
YYD1_k127_476281_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000001643 120.0
YYD1_k127_4796930_0 benzoyl-CoA oxygenase K15512 - 1.14.13.208 2.01e-245 764.0
YYD1_k127_4796930_1 enoyl-CoA hydratase K15513 - 4.1.2.44 1.135e-227 717.0
YYD1_k127_4796930_10 Belongs to the BolA IbaG family K05527 - - 0.00000000000000000000000001583 111.0
YYD1_k127_4796930_11 phosphatase homologous to the C-terminal domain of histone macroH2A1 K07478 - - 0.00000000000000000000000004387 114.0
YYD1_k127_4796930_12 - - - - 0.000000000000002692 77.0
YYD1_k127_4796930_13 2-Nitropropane dioxygenase - - - 0.0000000001016 71.0
YYD1_k127_4796930_2 AMP-binding enzyme K12508 - 6.2.1.34 7.448e-224 716.0
YYD1_k127_4796930_3 mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 291.0
YYD1_k127_4796930_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002008 287.0
YYD1_k127_4796930_5 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000431 259.0
YYD1_k127_4796930_6 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000002196 262.0
YYD1_k127_4796930_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000000001405 213.0
YYD1_k127_4796930_8 - - - - 0.0000000000000000000000000000000000000000157 161.0
YYD1_k127_4796930_9 EamA-like transporter family - - - 0.000000000000000000000000000000000000009205 156.0
YYD1_k127_4804105_0 Serine aminopeptidase, S33 - - - 2.49e-198 626.0
YYD1_k127_4804105_1 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 593.0
YYD1_k127_4804105_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 457.0
YYD1_k127_4804105_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 465.0
YYD1_k127_4804105_4 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000008487 246.0
YYD1_k127_4804105_5 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000004469 231.0
YYD1_k127_4915062_0 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000009563 190.0
YYD1_k127_4915062_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000002139 173.0
YYD1_k127_4915062_2 LytR cell envelope-related transcriptional attenuator - - - 0.00000000000000000000000000000000000000000003281 173.0
YYD1_k127_4919718_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 7.835e-287 895.0
YYD1_k127_4919718_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006158 546.0
YYD1_k127_4919718_2 Protein of unknown function (DUF2817) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 430.0
YYD1_k127_4919718_3 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 391.0
YYD1_k127_4919718_4 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 344.0
YYD1_k127_4919718_5 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007877 275.0
YYD1_k127_4919742_0 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008667 329.0
YYD1_k127_4919742_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006641 262.0
YYD1_k127_4919742_2 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000009814 226.0
YYD1_k127_4919742_3 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000003958 193.0
YYD1_k127_4919742_4 OmpA family K02557 - - 0.00000000000000000000000000000000000000000004342 171.0
YYD1_k127_4919742_5 regulatory protein TetR - - - 0.0000000000000000126 91.0
YYD1_k127_4920577_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 3.357e-310 963.0
YYD1_k127_4920577_1 membrane - - - 0.00000000000000000000000000000000004844 135.0
YYD1_k127_4920577_3 - - - - 0.0001907 45.0
YYD1_k127_4921562_0 Haloacid dehalogenase, type II K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 406.0
YYD1_k127_4921562_1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.00000000000000000000002174 111.0
YYD1_k127_4921562_2 - - - - 0.00000000000000000001018 96.0
YYD1_k127_4921562_3 helix_turn_helix, Lux Regulon - - - 0.00000000000321 74.0
YYD1_k127_4948313_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 1.525e-220 698.0
YYD1_k127_4948313_1 Cysteine-rich domain - - - 1.586e-211 672.0
YYD1_k127_4948313_10 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.0000000000000000000000000000000000000287 154.0
YYD1_k127_4948313_11 - - - - 0.00000000000000000000000000003789 126.0
YYD1_k127_4948313_12 subunit of a heme lyase K02200 - - 0.00000000000000000000004855 100.0
YYD1_k127_4948313_13 Pilus assembly protein, PilO - - - 0.000000000000000006889 91.0
YYD1_k127_4948313_14 - - - - 0.00000000004941 71.0
YYD1_k127_4948313_15 - - - - 0.000000003819 68.0
YYD1_k127_4948313_2 Secretin and TonB N terminus short domain K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 552.0
YYD1_k127_4948313_3 Type II secretion system (T2SS), protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003629 374.0
YYD1_k127_4948313_4 Cytochrome c-type biogenesis protein K02200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001255 277.0
YYD1_k127_4948313_5 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008322 258.0
YYD1_k127_4948313_6 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000004881 206.0
YYD1_k127_4948313_7 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000000000000000000001159 205.0
YYD1_k127_4948313_8 Type II secretory pathway pseudopilin - - - 0.000000000000000000000000000000000000000000000000151 181.0
YYD1_k127_4948313_9 prepilin-type N-terminal cleavage methylation K02456 - - 0.0000000000000000000000000000000000000001193 159.0
YYD1_k127_4977181_0 Belongs to the amidase family K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 599.0
YYD1_k127_4977181_1 ribonuclease, Rne Rng family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 440.0
YYD1_k127_4977181_2 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 422.0
YYD1_k127_4981861_0 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000252 289.0
YYD1_k127_4981861_1 PFAM alanine racemase domain protein K20757 - 4.3.1.27 0.0000000000000000000000000000000000000000001011 162.0
YYD1_k127_4981861_2 - - - - 0.000000000000000000000000000000000005372 144.0
YYD1_k127_4981861_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000001943 133.0
YYD1_k127_4981861_4 Major Facilitator Superfamily - - - 0.0000000000000000000000000005486 115.0
YYD1_k127_4981861_5 - - - - 0.00000000000000000475 93.0
YYD1_k127_4994699_0 Periplasmic binding protein domain K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 587.0
YYD1_k127_4994699_1 ABC transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 374.0
YYD1_k127_4994699_2 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007656 345.0
YYD1_k127_4994699_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000003623 203.0
YYD1_k127_4994699_4 Amidohydrolase K10221 - 3.1.1.57 0.0000000000000000000000000000000000000003589 150.0
YYD1_k127_4998718_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 1.317e-255 807.0
YYD1_k127_4998718_1 Amidohydrolase family K01465 - 3.5.2.3 9.415e-198 625.0
YYD1_k127_4998718_2 Belongs to the citrate synthase family K01659 - 2.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004988 549.0
YYD1_k127_4998718_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 480.0
YYD1_k127_4998718_4 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K03417 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006113,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015980,GO:0016042,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019752,GO:0032787,GO:0042737,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0046421,GO:0046459,GO:0046872,GO:0055114,GO:0071704,GO:0072329,GO:1901575 4.1.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 424.0
YYD1_k127_4998718_5 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000003893 149.0
YYD1_k127_4998718_6 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 - - 0.0000000000000000000000000000000001774 141.0
YYD1_k127_4998718_7 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000004603 124.0
YYD1_k127_5001856_0 Protein of unknown function (DUF521) K09123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 403.0
YYD1_k127_5001856_1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000000199 205.0
YYD1_k127_5001856_2 Cache domain - - - 0.00000000002138 69.0
YYD1_k127_5026489_0 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004242 246.0
YYD1_k127_5026489_1 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000000002791 132.0
YYD1_k127_5026489_2 helix_turn_helix, Lux Regulon - - - 0.00000000000003154 72.0
YYD1_k127_5026489_3 Type II secretory pathway, pseudopilin - - - 0.00006681 45.0
YYD1_k127_5026489_4 PAS fold - - - 0.000351 51.0
YYD1_k127_5035939_0 Protein of unknown function - - - 2.137e-279 901.0
YYD1_k127_5035939_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.199e-269 857.0
YYD1_k127_5035939_10 COG2057 Acyl CoA acetate 3-ketoacid CoA transferase, beta subunit K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000006635 257.0
YYD1_k127_5035939_11 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000001679 228.0
YYD1_k127_5035939_12 Small integral membrane protein - - - 0.00000000000000000000000000000000000000000000001822 175.0
YYD1_k127_5035939_13 Protein of unknown function (DUF3047) - - - 0.00000000000000000000000000000000000000003768 163.0
YYD1_k127_5035939_14 SnoaL-like domain - - - 0.00000000000000000000000000000000002068 139.0
YYD1_k127_5035939_15 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000007688 93.0
YYD1_k127_5035939_16 Zinc-finger domain - - - 0.000000000000000003947 87.0
YYD1_k127_5035939_2 Putative modulator of DNA gyrase K03568 - - 4.52e-227 711.0
YYD1_k127_5035939_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 491.0
YYD1_k127_5035939_4 heptosyltransferase II K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 331.0
YYD1_k127_5035939_5 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 328.0
YYD1_k127_5035939_6 alpha/beta hydrolase fold K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 322.0
YYD1_k127_5035939_7 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01039 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 328.0
YYD1_k127_5035939_8 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 310.0
YYD1_k127_5035939_9 lactoylglutathione lyase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 299.0
YYD1_k127_5039534_0 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 6.585e-232 732.0
YYD1_k127_5039534_1 Extracellular liganD-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007519 552.0
YYD1_k127_5039534_2 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 400.0
YYD1_k127_5039534_3 Dimerisation domain of Zinc Transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 378.0
YYD1_k127_5039534_4 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 353.0
YYD1_k127_5039534_5 Acetyl-CoA hydrolase/transferase N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 351.0
YYD1_k127_5039534_6 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 312.0
YYD1_k127_5039534_7 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001143 286.0
YYD1_k127_5039534_8 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001147 269.0
YYD1_k127_5088577_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 3.82e-280 872.0
YYD1_k127_5088577_1 Outer membrane protein beta-barrel domain K16079 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000004913 159.0
YYD1_k127_5088577_2 Belongs to the ompA family - - - 0.000000000000000000000000325 109.0
YYD1_k127_50903_0 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000977 591.0
YYD1_k127_50903_1 Lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 302.0
YYD1_k127_50903_2 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002386 284.0
YYD1_k127_50903_3 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000936 264.0
YYD1_k127_50903_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000003002 256.0
YYD1_k127_50903_5 peptidase K06194 - - 0.000000000000000000000000000000000000000000000000000000001593 210.0
YYD1_k127_50903_6 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0000000000001812 70.0
YYD1_k127_5117420_0 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 3.971e-266 828.0
YYD1_k127_5117420_1 Fumarate reductase flavoprotein C-term - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005765 602.0
YYD1_k127_5117420_2 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 541.0
YYD1_k127_5117420_3 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009351 424.0
YYD1_k127_5117420_4 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003515 372.0
YYD1_k127_5117420_5 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 322.0
YYD1_k127_5117420_6 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001496 276.0
YYD1_k127_5117420_7 abc transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002435 251.0
YYD1_k127_5125885_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004368 588.0
YYD1_k127_5125885_1 Major Facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004119 505.0
YYD1_k127_5125885_10 Glycoprotease family K14742 - - 0.0000000000000000000000000000000000000000000000000000000008495 207.0
YYD1_k127_5125885_11 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000000000000007227 151.0
YYD1_k127_5125885_12 COG0437 Fe-S-cluster-containing hydrogenase components 1 K00184 - - 0.000000000000000000000000000003038 135.0
YYD1_k127_5125885_13 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000009513 106.0
YYD1_k127_5125885_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 467.0
YYD1_k127_5125885_3 Phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005861 397.0
YYD1_k127_5125885_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 382.0
YYD1_k127_5125885_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 336.0
YYD1_k127_5125885_6 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 352.0
YYD1_k127_5125885_7 phytoene K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002661 321.0
YYD1_k127_5125885_8 Tartrate dehydrogenase K07246 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 297.0
YYD1_k127_5125885_9 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 286.0
YYD1_k127_5126337_0 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 383.0
YYD1_k127_5126337_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 325.0
YYD1_k127_5126337_2 PFAM conserved - - - 0.000000000000000000000000000000000000000000002668 173.0
YYD1_k127_5126337_3 Isocitrate/isopropylmalate dehydrogenase K00052 GO:0006082,GO:0006575,GO:0006732,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0019297,GO:0019298,GO:0019752,GO:0032787,GO:0042398,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576 1.1.1.85 0.000000000000000000000000000001862 122.0
YYD1_k127_5176904_0 type II and III secretion system protein K02666 - - 7.109e-241 770.0
YYD1_k127_5176904_1 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 9.669e-212 669.0
YYD1_k127_5176904_2 Pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 469.0
YYD1_k127_5176904_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 432.0
YYD1_k127_5176904_4 Pilus assembly protein PilO K02664 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003874 250.0
YYD1_k127_5176904_5 Shikimate kinase K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000000000001266 238.0
YYD1_k127_5176904_6 fimbrial biogenesis protein PilN K02663 - - 0.0000000000000000000000000000000000000000000000000000002551 199.0
YYD1_k127_5176904_7 pilus assembly protein PilP K02665 - - 0.0000000000000000000000000000000000000000001131 165.0
YYD1_k127_5208121_0 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 307.0
YYD1_k127_5208121_1 PFAM peptidase M48 Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000713 298.0
YYD1_k127_5208121_2 - - - - 0.00000000000000000000000000000000000000000000000000000000005462 212.0
YYD1_k127_5214618_0 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000000000000003731 200.0
YYD1_k127_5214618_1 YCII-related domain - - - 0.0000000000000000000000000000000000000000000003119 173.0
YYD1_k127_5214618_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.0000000000000000000000000000000000000000001257 163.0
YYD1_k127_5214618_3 YCII-related domain - - - 0.0000000000000000000000000000000000000002877 151.0
YYD1_k127_5214618_4 Phosphoribosyl transferase domain K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000001495 93.0
YYD1_k127_5214618_5 lactoylglutathione lyase activity - - - 0.000001373 50.0
YYD1_k127_5217751_0 Ribonucleotide reductase, all-alpha domain - - - 0.0 1412.0
YYD1_k127_5217751_1 PFAM sigma-54 factor interaction domain-containing protein K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 510.0
YYD1_k127_5217751_10 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000000004156 70.0
YYD1_k127_5217751_11 - - - - 0.000000003744 63.0
YYD1_k127_5217751_12 - K06950 - - 0.0000001844 59.0
YYD1_k127_5217751_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008418 443.0
YYD1_k127_5217751_3 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009107 390.0
YYD1_k127_5217751_4 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 382.0
YYD1_k127_5217751_5 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 332.0
YYD1_k127_5217751_6 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001893 297.0
YYD1_k127_5217751_7 PFAM N-acetylmuramoyl-L-alanine amidase K03806 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000002283 232.0
YYD1_k127_5217751_8 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000002353 146.0
YYD1_k127_5217751_9 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000006569 131.0
YYD1_k127_5223744_0 Catalyzes the sodium-dependent transport of glutamate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000057 356.0
YYD1_k127_5223744_1 TRAP transporter solute receptor TAXI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001191 291.0
YYD1_k127_5223744_2 Gram-negative porin - - - 0.000000000000000000000000000000000000000000000000000000000000001382 234.0
YYD1_k127_5223744_3 Predicted Permease Membrane Region K07085 - - 0.0000000000000000000000000000000002521 132.0
YYD1_k127_5228291_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122 - 1.17.1.9 1.602e-238 749.0
YYD1_k127_5228291_1 TIGRFAM formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 492.0
YYD1_k127_5228291_2 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086 471.0
YYD1_k127_5228291_3 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000008727 114.0
YYD1_k127_5228354_0 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 419.0
YYD1_k127_5228354_1 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006887 252.0
YYD1_k127_5228354_2 Acyl-CoA dehydrogenase, C-terminal domain K16047 - 1.14.14.12 0.000000000000000000000000000000000000000000000000000000000001671 215.0
YYD1_k127_5228354_3 Methylenetetrahydrofolate reductase - - - 0.00000000000000000000000000000000000000000000000000000003554 200.0
YYD1_k127_5241595_0 Membrane-bound lytic murein transglycosylase K08304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 388.0
YYD1_k127_5241595_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 338.0
YYD1_k127_5241595_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000000000000000000000000000000000000000000000000005688 203.0
YYD1_k127_5241595_3 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000000000007614 196.0
YYD1_k127_5241595_4 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000001213 188.0
YYD1_k127_5241595_5 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.00000000000000000000000000000001254 129.0
YYD1_k127_5245129_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 312.0
YYD1_k127_5245129_1 Histidine kinase K07641 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003981 296.0
YYD1_k127_5247256_0 ribonuclease, Rne Rng family K08301 - - 4.972e-205 646.0
YYD1_k127_5247256_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 553.0
YYD1_k127_5247256_2 Flavin containing amine oxidoreductase K02293 - 1.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 519.0
YYD1_k127_5247256_3 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000008018 214.0
YYD1_k127_5247256_4 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000003853 170.0
YYD1_k127_5247256_5 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000008973 152.0
YYD1_k127_5247256_6 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000001533 152.0
YYD1_k127_5247256_7 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000337 101.0
YYD1_k127_5250945_0 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 2.069e-195 614.0
YYD1_k127_5250945_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007751 297.0
YYD1_k127_5250945_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000001287 77.0
YYD1_k127_5262624_0 Belongs to the IlvD Edd family - - - 3.378e-276 857.0
YYD1_k127_5262624_1 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006936 554.0
YYD1_k127_5262624_2 PFAM Bacterial protein of - - - 0.0000000000000000000000000000000000000000000000000000000006738 209.0
YYD1_k127_5262624_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000004415 148.0
YYD1_k127_5262624_4 - - - - 0.00000000000000000005072 95.0
YYD1_k127_5262772_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1043.0
YYD1_k127_5262772_1 COG0017 Aspartyl asparaginyl-tRNA synthetases K01893 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 8.927e-214 672.0
YYD1_k127_5262772_10 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 315.0
YYD1_k127_5262772_11 TRAP dicarboxylate transporter - - - 0.000000000000000000000000000000000000000000000000000000002387 213.0
YYD1_k127_5262772_12 - - - - 0.00000000000000000000000000000000000000000000000000000242 196.0
YYD1_k127_5262772_13 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000001962 190.0
YYD1_k127_5262772_14 transcriptional - - - 0.0000000000000000000000000000000000000000003313 166.0
YYD1_k127_5262772_15 - - - - 0.000000000000000000000000000000000000000000655 172.0
YYD1_k127_5262772_16 Low molecular weight phosphotyrosine protein phosphatase K01104 GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576 3.1.3.48 0.000000000000000000000000000000000000000003381 175.0
YYD1_k127_5262772_17 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.0000000000000000000000000000000000009766 154.0
YYD1_k127_5262772_18 Cupin domain K01607 - 4.1.1.44 0.0000000000000000000000000000000444 135.0
YYD1_k127_5262772_19 Cell Wall Hydrolase - - - 0.000000000000000000000000003196 118.0
YYD1_k127_5262772_2 Peptidase family M20/M25/M40 - - - 5.321e-206 656.0
YYD1_k127_5262772_20 PFAM alanine racemase domain protein K20757 - 4.3.1.27 0.0000000000000005375 91.0
YYD1_k127_5262772_21 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000837 68.0
YYD1_k127_5262772_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 544.0
YYD1_k127_5262772_4 Psort location Cytoplasmic, score K00813,K00832 - 2.6.1.1,2.6.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 509.0
YYD1_k127_5262772_5 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 517.0
YYD1_k127_5262772_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 503.0
YYD1_k127_5262772_7 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007464 320.0
YYD1_k127_5262772_8 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 337.0
YYD1_k127_5262772_9 Maltose acetyltransferase K00661 - 2.3.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 306.0
YYD1_k127_5265516_0 elongation factor G K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 391.0
YYD1_k127_5265516_1 Domain of unknown function (DUF4340) - - - 0.0000000000000000000002202 110.0
YYD1_k127_5265516_2 Protein of unknown function (DUF2721) - - - 0.00000000000000000008286 94.0
YYD1_k127_5265516_3 ABC-type uncharacterized transport system - - - 0.0000005972 53.0
YYD1_k127_5298345_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1015.0
YYD1_k127_5298345_1 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 2.161e-201 646.0
YYD1_k127_5298345_10 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000000000000000000005917 212.0
YYD1_k127_5298345_2 D-amino acid dehydrogenase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 435.0
YYD1_k127_5298345_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005515 351.0
YYD1_k127_5298345_4 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009044 351.0
YYD1_k127_5298345_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005182 321.0
YYD1_k127_5298345_6 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001202 275.0
YYD1_k127_5298345_7 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001437 262.0
YYD1_k127_5298345_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000265 246.0
YYD1_k127_5298345_9 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000001293 250.0
YYD1_k127_5309240_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1349.0
YYD1_k127_5309240_1 MmgE/PrpD family K01720 - 4.2.1.79 5.15e-245 764.0
YYD1_k127_5309240_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006519 307.0
YYD1_k127_5309240_3 also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity K01659 - 2.3.3.5 0.0000000000000000000000000000001243 123.0
YYD1_k127_5309240_4 Protein required for attachment to host cells - - - 0.000000000009522 69.0
YYD1_k127_5309240_5 Protein of unknown function (DUF3460) - - - 0.000000004753 60.0
YYD1_k127_5333994_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 9.721e-264 831.0
YYD1_k127_5333994_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 557.0
YYD1_k127_5333994_10 Gram-negative-bacterium-type cell outer membrane assembly K21572 - - 0.000005387 54.0
YYD1_k127_5333994_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 432.0
YYD1_k127_5333994_3 Tyrosine recombinase xerD K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 357.0
YYD1_k127_5333994_4 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004535 258.0
YYD1_k127_5333994_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000005686 211.0
YYD1_k127_5333994_6 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily - - - 0.00000000000000000000000000000000000000000000000000000002253 208.0
YYD1_k127_5333994_7 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000000000000001817 181.0
YYD1_k127_5333994_8 Methylated-DNA- protein -cysteine S-methyltransferase K00567 - 2.1.1.63 0.000000000000000000000000000000000000000007817 158.0
YYD1_k127_5333994_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000000000000694 122.0
YYD1_k127_5351306_0 4Fe-4S dicluster domain K00124,K07307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 400.0
YYD1_k127_5351306_1 chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009239 359.0
YYD1_k127_5351306_2 Prokaryotic cytochrome b561 K00127 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 323.0
YYD1_k127_5351306_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000007351 169.0
YYD1_k127_5351306_4 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000001342 116.0
YYD1_k127_5351306_5 - - - - 0.000002546 58.0
YYD1_k127_5352199_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 1.056e-217 692.0
YYD1_k127_5352199_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 614.0
YYD1_k127_5352199_2 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 516.0
YYD1_k127_5352199_3 Histidine kinase K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 460.0
YYD1_k127_5352199_4 - - - - 0.00000000000000000007025 90.0
YYD1_k127_5352199_5 Protein of unknown function (DUF3617) - - - 0.0000007738 57.0
YYD1_k127_5391563_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 535.0
YYD1_k127_5391563_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000001464 77.0
YYD1_k127_5391563_2 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.0000000000000871 75.0
YYD1_k127_5391563_3 hyperosmotic response - - - 0.00006573 53.0
YYD1_k127_5423883_0 Single-stranded-DNA-specific exonuclease RecJ K07462 - - 2.126e-216 686.0
YYD1_k127_5423883_1 GIY-YIG type nucleases (URI domain) K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 404.0
YYD1_k127_5423883_2 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 330.0
YYD1_k127_5423883_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000928 321.0
YYD1_k127_5423883_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002532 261.0
YYD1_k127_5423883_5 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000008416 174.0
YYD1_k127_5423883_6 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000004516 166.0
YYD1_k127_5427425_0 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 324.0
YYD1_k127_5427425_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 302.0
YYD1_k127_5427425_2 C4-dicarboxylate ABC transporter permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006267 296.0
YYD1_k127_5427425_3 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.0000003519 59.0
YYD1_k127_5444645_0 Major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008218 604.0
YYD1_k127_5444645_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008742 569.0
YYD1_k127_5444645_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 498.0
YYD1_k127_5444645_3 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 367.0
YYD1_k127_5444645_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 354.0
YYD1_k127_5444645_5 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000004804 241.0
YYD1_k127_5444645_6 PFAM Amidohydrolase 2 K03392,K07045 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000002735 222.0
YYD1_k127_5444645_7 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000002863 220.0
YYD1_k127_5444645_8 - - - - 0.000000000000000003311 96.0
YYD1_k127_5444645_9 - - - - 0.0001397 54.0
YYD1_k127_5490747_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 488.0
YYD1_k127_5490747_1 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 465.0
YYD1_k127_5490747_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006099 346.0
YYD1_k127_5490747_3 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 317.0
YYD1_k127_5490747_4 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 299.0
YYD1_k127_5490747_5 SWI complex, BAF60b domains - - - 0.0000000000000000000000000000000001367 136.0
YYD1_k127_5490926_0 AAA domain (Cdc48 subfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 490.0
YYD1_k127_5490926_1 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004353 420.0
YYD1_k127_5490926_10 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000001317 113.0
YYD1_k127_5490926_11 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000577 82.0
YYD1_k127_5490926_12 Lipocalin-like domain - - - 0.000000000000002125 83.0
YYD1_k127_5490926_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 343.0
YYD1_k127_5490926_3 Polysaccharide deacetylase K22278 - 3.5.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001908 281.0
YYD1_k127_5490926_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003034 296.0
YYD1_k127_5490926_5 Domain of unknown function (DUF2437) - - - 0.0000000000000000000000000000000000000000000000000000000000000000004274 235.0
YYD1_k127_5490926_6 DinB family - - - 0.00000000000000000000000000000000000000000000000006766 186.0
YYD1_k127_5490926_7 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000000000000000000000000000004546 160.0
YYD1_k127_5490926_8 Amidohydrolase K10221 - 3.1.1.57 0.00000000000000000000000000000000000004853 146.0
YYD1_k127_5490926_9 Cytochrome c - - - 0.00000000000000000000000008827 111.0
YYD1_k127_5493432_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 591.0
YYD1_k127_5493432_1 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006499 524.0
YYD1_k127_5493432_10 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 318.0
YYD1_k127_5493432_11 Peptidase dimerisation domain K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 305.0
YYD1_k127_5493432_12 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004811 279.0
YYD1_k127_5493432_13 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002035 274.0
YYD1_k127_5493432_14 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001057 248.0
YYD1_k127_5493432_15 2-dehydropantoate 2-reductase activity K00077,K01295 - 1.1.1.169,3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000002846 253.0
YYD1_k127_5493432_16 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000000000000001593 214.0
YYD1_k127_5493432_17 - - - - 0.000000000000000000000000000000000000000001066 156.0
YYD1_k127_5493432_18 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000002634 127.0
YYD1_k127_5493432_19 Belongs to the short-chain dehydrogenases reductases (SDR) family K00019 - 1.1.1.30 0.000000000000000000000001822 105.0
YYD1_k127_5493432_2 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032,K13892 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 529.0
YYD1_k127_5493432_3 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 452.0
YYD1_k127_5493432_4 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002575 423.0
YYD1_k127_5493432_5 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 398.0
YYD1_k127_5493432_6 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 374.0
YYD1_k127_5493432_7 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007349 371.0
YYD1_k127_5493432_8 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 338.0
YYD1_k127_5493432_9 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 330.0
YYD1_k127_5495133_0 dna topoisomerase III K03169 - 5.99.1.2 1.571e-201 639.0
YYD1_k127_5495133_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 336.0
YYD1_k127_5503470_0 Pfam Sulfatase K01133 - 3.1.6.6 1.271e-231 725.0
YYD1_k127_5503470_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 1.172e-213 675.0
YYD1_k127_5503470_10 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007667 317.0
YYD1_k127_5503470_11 Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008121 309.0
YYD1_k127_5503470_12 Bacterial regulatory proteins, gntR family - - - 0.0000000000000000000000000000000000000000000000000000007383 218.0
YYD1_k127_5503470_13 PFAM Asp Glu hydantoin racemase - - - 0.0000000000000000000000000000000000000000000000000000945 192.0
YYD1_k127_5503470_14 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000001791 168.0
YYD1_k127_5503470_15 PFAM (2R)-phospho-3-sulfolactate synthase ComA K08097 - 4.4.1.19 0.000000000000000000000006545 117.0
YYD1_k127_5503470_16 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000009507 88.0
YYD1_k127_5503470_2 TIGRFAM amidase, hydantoinase carbamoylase family K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 532.0
YYD1_k127_5503470_3 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004774 473.0
YYD1_k127_5503470_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 443.0
YYD1_k127_5503470_5 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 451.0
YYD1_k127_5503470_6 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 428.0
YYD1_k127_5503470_7 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 418.0
YYD1_k127_5503470_8 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008056 359.0
YYD1_k127_5503470_9 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 319.0
YYD1_k127_5507911_0 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 470.0
YYD1_k127_5507911_1 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000483 207.0
YYD1_k127_5507911_2 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000000000000001274 177.0
YYD1_k127_5507911_3 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000001982 162.0
YYD1_k127_5508539_0 PFAM fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 542.0
YYD1_k127_5508539_1 sulfide dehydrogenase K05301 - 1.8.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 490.0
YYD1_k127_5508539_10 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000002456 95.0
YYD1_k127_5508539_11 Protein of unknown function (DUF3108) - - - 0.0000000000639 71.0
YYD1_k127_5508539_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 482.0
YYD1_k127_5508539_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 432.0
YYD1_k127_5508539_4 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002132 276.0
YYD1_k127_5508539_5 Belongs to the ClpA ClpB family K03694 - - 0.000000000000000000000000000000000000000000000000000000000000000438 222.0
YYD1_k127_5508539_6 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000000000000000000000000000000000491 224.0
YYD1_k127_5508539_7 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000001384 221.0
YYD1_k127_5508539_8 Ribosomal L28 family K02902 - - 0.00000000000000000000000000001569 120.0
YYD1_k127_5508539_9 cytochrome - - - 0.00000000000000000000009577 103.0
YYD1_k127_5523271_0 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009731 428.0
YYD1_k127_5523271_1 Divalent cation transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 361.0
YYD1_k127_5523271_2 Phospholipase A1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 296.0
YYD1_k127_5523271_3 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000003626 232.0
YYD1_k127_5523271_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000005608 128.0
YYD1_k127_5529233_0 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 356.0
YYD1_k127_5529233_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001679 259.0
YYD1_k127_5529233_2 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.0000000000000000000000000000000005224 139.0
YYD1_k127_5529233_3 Dodecin K09165 - - 0.000000000000000000000006686 103.0
YYD1_k127_5529574_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.925e-282 873.0
YYD1_k127_5529574_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 8.745e-214 673.0
YYD1_k127_5529574_10 PFAM ABC transporter K02049,K15555 - - 0.00000000000000000000003126 99.0
YYD1_k127_5529574_12 Protein of unknown function VcgC/VcgE (DUF2780) - - - 0.00000000001501 71.0
YYD1_k127_5529574_2 Pfam:DUF1446 - - - 1.018e-209 664.0
YYD1_k127_5529574_3 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 422.0
YYD1_k127_5529574_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 379.0
YYD1_k127_5529574_5 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009894 361.0
YYD1_k127_5529574_6 - - - - 0.0000000000000000000000000000000000000000001173 166.0
YYD1_k127_5529574_7 Histidine phosphatase superfamily (branch 1) - - - 0.000000000000000000000000000000000000000009653 156.0
YYD1_k127_5529574_8 Domain of unknown function (DUF4387) - - - 0.000000000000000000000000000000105 132.0
YYD1_k127_5529574_9 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.00000000000000000000000000002878 123.0
YYD1_k127_5537947_0 Branched-chain amino acid transport system / permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000007823 233.0
YYD1_k127_5537947_1 Fumarate reductase flavoprotein C-term - - - 0.00000000000000000000000000000000000000000000000000004298 203.0
YYD1_k127_5537947_2 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000001966 183.0
YYD1_k127_5537947_3 - - - - 0.000000000001491 72.0
YYD1_k127_5538534_0 Dehydratase family K13875 - 4.2.1.25 2.274e-295 912.0
YYD1_k127_5538534_1 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K01685,K01708,K16846 - 4.2.1.42,4.2.1.7,4.4.1.24 3.124e-221 699.0
YYD1_k127_5538534_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000002557 261.0
YYD1_k127_5538534_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000964 233.0
YYD1_k127_5538534_4 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0005997 43.0
YYD1_k127_5538612_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000778 505.0
YYD1_k127_5538612_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007701 429.0
YYD1_k127_5538612_2 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008671 296.0
YYD1_k127_5538612_3 Ankyrin repeats (3 copies) - - - 0.0000002232 55.0
YYD1_k127_5540127_0 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 450.0
YYD1_k127_5540127_1 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007545 314.0
YYD1_k127_5540127_2 ornithine cyclodeaminase activity K01750,K18258,K19244 - 1.4.1.1,1.5.1.25,4.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002344 290.0
YYD1_k127_5540127_3 Pyruvate phosphate dikinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006116 283.0
YYD1_k127_5540127_4 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000005491 235.0
YYD1_k127_5540127_5 Chromate resistance exported protein - - - 0.000000000001191 69.0
YYD1_k127_5542886_0 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001884 494.0
YYD1_k127_5542886_1 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000008795 165.0
YYD1_k127_5542886_2 - - - - 0.0000000000000000000000000001076 120.0
YYD1_k127_5542886_3 COG0559 Branched-chain amino acid ABC-type transport system, permease components K01997 - - 0.00001041 48.0
YYD1_k127_5544598_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 5.952e-205 657.0
YYD1_k127_5544598_1 SPFH Band 7 PHB domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 398.0
YYD1_k127_5544598_2 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 360.0
YYD1_k127_5544598_3 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.0000000000000000000000000000000000000000000000001937 180.0
YYD1_k127_5544598_4 NfeD-like C-terminal, partner-binding - - - 0.00007211 49.0
YYD1_k127_5547602_0 ABC transporter C-terminal domain K15738 - - 1.152e-200 640.0
YYD1_k127_5547602_1 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 346.0
YYD1_k127_5547602_2 acetylesterase activity K01046 - 3.1.1.3 0.0000000000000000000000000000000000000000000000000000000002834 212.0
YYD1_k127_5547602_3 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000001148 140.0
YYD1_k127_5547602_5 membrane transporter protein K07090 - - 0.0000000000000004429 87.0
YYD1_k127_5547602_6 Periplasmic or secreted lipoprotein - - - 0.00000001204 62.0
YYD1_k127_5549886_0 Catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate K07404 - 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 340.0
YYD1_k127_5549886_1 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000002698 231.0
YYD1_k127_5549886_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001308 228.0
YYD1_k127_5549886_3 glyoxalase bleomycin resistance protein - - - 0.0000000000000000000000000000000000000000000000006256 178.0
YYD1_k127_5549886_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000006103 159.0
YYD1_k127_5549886_5 PFAM NLP P60 protein - - - 0.000000000000000000000000000001638 126.0
YYD1_k127_5549886_6 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000361 120.0
YYD1_k127_5549886_7 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000004401 112.0
YYD1_k127_5549886_8 GCN5-related N-acetyl-transferase K06975 - - 0.0000000000000000000000004086 107.0
YYD1_k127_5555619_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 1.94e-258 808.0
YYD1_k127_5555619_1 Cobalamin-independent synthase, Catalytic domain K00549,K22363 - 2.1.1.14,4.4.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 555.0
YYD1_k127_5555619_10 - - - - 0.0000000008907 63.0
YYD1_k127_5555619_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 402.0
YYD1_k127_5555619_3 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 332.0
YYD1_k127_5555619_4 PFAM pyridoxamine 5-phosphate K07006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001122 245.0
YYD1_k127_5555619_5 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000001173 248.0
YYD1_k127_5555619_6 Cupin 2, conserved barrel - - - 0.000000000000000000000000000000000000000000000000000000000474 203.0
YYD1_k127_5555619_7 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000000000004852 194.0
YYD1_k127_5555619_8 response regulator - - - 0.000000000000000000000000000000000000000067 161.0
YYD1_k127_5555619_9 - - - - 0.0000000008792 68.0
YYD1_k127_5574571_0 Transposase IS116 IS110 IS902 family protein K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000333 409.0
YYD1_k127_5574571_1 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001539 244.0
YYD1_k127_5574571_2 - - - - 0.0000000007082 61.0
YYD1_k127_5579050_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 7.415e-273 856.0
YYD1_k127_5579050_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 364.0
YYD1_k127_5579050_2 oxidoreductase DsbE K02199 - - 0.000000000000000000000000000000000000000000000000000000000000002101 228.0
YYD1_k127_5579050_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000000000000000003776 213.0
YYD1_k127_5579050_4 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000002592 203.0
YYD1_k127_5579050_5 Uncharacterized protein conserved in bacteria (DUF2237) K09966 - - 0.0000000000000000000000000000000000000008171 149.0
YYD1_k127_5579050_6 subunit of a heme lyase K02200 - - 0.0000000000000000000000000001038 117.0
YYD1_k127_5579050_7 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00006045 46.0
YYD1_k127_5583129_0 Transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.0 1354.0
YYD1_k127_5583129_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 531.0
YYD1_k127_5583129_10 Thioesterase - - - 0.000000000000000000000000000000001266 135.0
YYD1_k127_5583129_11 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.000000000000000000000000003262 119.0
YYD1_k127_5583129_12 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000001458 118.0
YYD1_k127_5583129_13 Heavy metal transport detoxification protein K07213 - - 0.0000000000000001579 82.0
YYD1_k127_5583129_2 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002892 396.0
YYD1_k127_5583129_3 Outer membrane efflux protein K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 396.0
YYD1_k127_5583129_4 DnaJ C terminal domain K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 334.0
YYD1_k127_5583129_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K18145 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 340.0
YYD1_k127_5583129_6 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000003694 230.0
YYD1_k127_5583129_7 PFAM Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000001469 218.0
YYD1_k127_5583129_8 COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes - - - 0.0000000000000000000000000000000000000001429 154.0
YYD1_k127_5583129_9 Bacterial transcriptional repressor C-terminal - - - 0.000000000000000000000000000000000004888 143.0
YYD1_k127_5604803_0 Aldehyde oxidase and xanthine dehydrogenase K03520 - 1.2.5.3 0.0 1104.0
YYD1_k127_5604803_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 5.344e-196 618.0
YYD1_k127_5604803_10 Lumazine binding domain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000002876 206.0
YYD1_k127_5604803_11 protein conserved in bacteria containing a divergent form of TPR repeats - - - 0.000000000000000000000000000000000000000003775 167.0
YYD1_k127_5604803_12 Molybdopterin-guanine dinucleotide biosynthesis protein MobA K07141 - 2.7.7.76 0.0000000000000000000000000000000000000002037 168.0
YYD1_k127_5604803_13 serine threonine protein kinase K12132 - 2.7.11.1 0.0000001484 63.0
YYD1_k127_5604803_14 SPW repeat - - - 0.000001113 59.0
YYD1_k127_5604803_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 430.0
YYD1_k127_5604803_3 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 414.0
YYD1_k127_5604803_4 histidine kinase HAMP region domain protein K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 351.0
YYD1_k127_5604803_5 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001951 265.0
YYD1_k127_5604803_6 Arginase family K01476 - 3.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000009811 245.0
YYD1_k127_5604803_7 carbon monoxide dehydrogenase K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000001523 233.0
YYD1_k127_5604803_8 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000008604 203.0
YYD1_k127_5604803_9 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000000001176 208.0
YYD1_k127_5620022_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 551.0
YYD1_k127_5620022_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 518.0
YYD1_k127_5620022_10 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001307 275.0
YYD1_k127_5620022_11 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005044 268.0
YYD1_k127_5620022_12 VacJ family lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000000000003027 246.0
YYD1_k127_5620022_13 MlaC protein K07323 - - 0.000000000000000000000000000000000000000000000000000000000001127 221.0
YYD1_k127_5620022_14 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000000105 200.0
YYD1_k127_5620022_15 protein kinase activity - - - 0.000000000000000000000000000000000000000000003829 168.0
YYD1_k127_5620022_16 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000000000003887 169.0
YYD1_k127_5620022_17 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.000000000000000000000000000000000009483 138.0
YYD1_k127_5620022_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000000000764 121.0
YYD1_k127_5620022_19 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000003261 103.0
YYD1_k127_5620022_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 383.0
YYD1_k127_5620022_20 Belongs to the BolA IbaG family - - - 0.0000000000000000112 94.0
YYD1_k127_5620022_21 STAS domain K07122 - - 0.0000000171 63.0
YYD1_k127_5620022_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 389.0
YYD1_k127_5620022_4 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 386.0
YYD1_k127_5620022_5 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 379.0
YYD1_k127_5620022_6 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006346 337.0
YYD1_k127_5620022_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007134 344.0
YYD1_k127_5620022_8 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 332.0
YYD1_k127_5620022_9 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 318.0
YYD1_k127_562067_0 Belongs to the TPP enzyme family K01577 - 4.1.1.8 1.76e-310 959.0
YYD1_k127_562067_1 CoA-transferase family III K07749,K14471,K14472 - 2.8.3.16,2.8.3.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 501.0
YYD1_k127_562067_2 Tripartite tricarboxylate transporter TctA family K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006171 344.0
YYD1_k127_562067_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008475 262.0
YYD1_k127_5621002_0 Amidohydrolase family K05603 - 3.5.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009594 439.0
YYD1_k127_5621002_1 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 432.0
YYD1_k127_5621002_2 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895,K01907 - 6.2.1.1,6.2.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 408.0
YYD1_k127_5623369_0 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000001939 188.0
YYD1_k127_5623369_1 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000000000000000000000000000000000000001421 190.0
YYD1_k127_5623369_2 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000008251 179.0
YYD1_k127_5634315_0 PFAM FAD dependent oxidoreductase - - - 2.739e-201 639.0
YYD1_k127_5634315_1 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 540.0
YYD1_k127_5634315_10 polyketide cyclase - - - 0.000000000000000000000000000014 122.0
YYD1_k127_5634315_11 oxidation-reduction process - - - 0.000000000000000000000000001419 123.0
YYD1_k127_5634315_2 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 448.0
YYD1_k127_5634315_3 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 404.0
YYD1_k127_5634315_4 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 326.0
YYD1_k127_5634315_5 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001315 274.0
YYD1_k127_5634315_6 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000009869 211.0
YYD1_k127_5634315_7 Tautomerase enzyme - - - 0.0000000000000000000000000000000000000000001455 162.0
YYD1_k127_5634315_8 membrane transporter protein K07090 - - 0.00000000000000000000000000000000001578 144.0
YYD1_k127_5634315_9 - - - - 0.0000000000000000000000000000009903 133.0
YYD1_k127_5638693_0 Bacterial protein of unknown function (DUF853) K06915 - - 1.421e-201 641.0
YYD1_k127_5638693_1 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 375.0
YYD1_k127_5638693_2 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 367.0
YYD1_k127_5638693_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001122 267.0
YYD1_k127_5638693_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000006539 224.0
YYD1_k127_5638693_5 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000000008209 231.0
YYD1_k127_5638693_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000001193 203.0
YYD1_k127_5643456_0 PFAM ATPase associated with various cellular activities AAA_3 K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007657 425.0
YYD1_k127_5643456_1 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005106 412.0
YYD1_k127_5643456_2 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000001136 205.0
YYD1_k127_5671753_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 9.808e-202 650.0
YYD1_k127_5671753_1 Universal stress protein family - - - 0.000000000000000000000000000000000000000132 157.0
YYD1_k127_5671753_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000003053 61.0
YYD1_k127_5680145_0 response regulator K02481 - - 3.736e-195 632.0
YYD1_k127_5680145_1 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 538.0
YYD1_k127_5680145_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000001688 211.0
YYD1_k127_5680145_3 cytochrome - - - 0.000000000000000000000001568 104.0
YYD1_k127_5707270_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 510.0
YYD1_k127_5707270_1 Protein of unknown function (DUF520) K09767 - - 0.000000000003364 66.0
YYD1_k127_5776108_0 Tartrate K01677 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 433.0
YYD1_k127_5776108_1 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 387.0
YYD1_k127_5776108_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 351.0
YYD1_k127_5776108_3 Fumarase C-terminus K01678,K03780 - 4.2.1.2,4.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 308.0
YYD1_k127_5776108_4 Chalcone isomerase-like - - - 0.00000000000000000000000000000000000000000000000000000000005557 211.0
YYD1_k127_5776108_5 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 - 1.3.5.4 0.00000000000000000000000000000000000000000000000001441 180.0
YYD1_k127_5776108_6 succinate dehydrogenase K00246 - - 0.0000000000000000000000000002445 119.0
YYD1_k127_5776108_7 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.00000000000000000000000007941 115.0
YYD1_k127_5776445_0 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006284 385.0
YYD1_k127_5776445_1 Glutathione S-transferase K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000007047 156.0
YYD1_k127_5776445_2 Tetratricopeptide repeat - - - 0.00000000003128 74.0
YYD1_k127_5787358_0 methyltransferase - - - 3.459e-229 730.0
YYD1_k127_5787358_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 515.0
YYD1_k127_5787358_2 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007945 514.0
YYD1_k127_5787358_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000001134 199.0
YYD1_k127_5787358_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000907 197.0
YYD1_k127_5787358_5 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000005536 196.0
YYD1_k127_5787358_6 Lysine exporter protein (Lyse ygga) K11250 - - 0.00000000000000000000001549 100.0
YYD1_k127_5789637_0 DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003991 556.0
YYD1_k127_5789637_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000001706 227.0
YYD1_k127_5789637_2 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000001815 164.0
YYD1_k127_5789637_3 cheY-homologous receiver domain K02657 - - 0.00000000000000000000001317 104.0
YYD1_k127_5790516_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 9.653e-287 894.0
YYD1_k127_5790516_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 2.792e-244 767.0
YYD1_k127_5790516_2 COG1132 ABC-type multidrug transport system, ATPase and permease components K06147 - - 4.733e-202 645.0
YYD1_k127_5790516_3 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 521.0
YYD1_k127_5790516_4 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000003834 254.0
YYD1_k127_5790516_5 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.0000000000000000000000005963 113.0
YYD1_k127_579299_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 6.888e-276 866.0
YYD1_k127_579299_1 Nitrate ABC transporter K02051,K15576,K22067 - - 1.78e-203 639.0
YYD1_k127_579299_2 Nitrate ABC transporter inner membrane subunit K15577 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 391.0
YYD1_k127_579299_3 abc transporter K02049,K15578 - - 0.0000000000000000000000000000000000000000000000000000000000000000004052 233.0
YYD1_k127_579299_4 ANTAR K07183 - - 0.00000000000000000000000000000000000000000000000001681 186.0
YYD1_k127_5795220_0 Bacterial extracellular solute-binding protein K02027 - - 4.166e-206 650.0
YYD1_k127_5795220_1 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 411.0
YYD1_k127_5795220_2 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009505 312.0
YYD1_k127_5795220_3 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000002684 196.0
YYD1_k127_5795220_4 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.00000000000000000000000000000000000002353 146.0
YYD1_k127_5795220_5 Helix-turn-helix XRE-family like proteins K21498 - - 0.000000000000000000000000000003988 121.0
YYD1_k127_579563_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 582.0
YYD1_k127_579563_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 421.0
YYD1_k127_579563_2 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 352.0
YYD1_k127_579563_3 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 317.0
YYD1_k127_579563_4 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 300.0
YYD1_k127_579563_5 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005067 249.0
YYD1_k127_579563_6 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008897,GO:0009058,GO:0016740,GO:0016772,GO:0016780,GO:0044238,GO:0071704,GO:1901576 2.7.8.7 0.00000000000000000000000000001321 125.0
YYD1_k127_5806265_0 PAS fold - - - 2.441e-207 662.0
YYD1_k127_5806265_1 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000007339 188.0
YYD1_k127_5806265_2 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000004778 187.0
YYD1_k127_5806265_3 PFAM response regulator receiver - - - 0.000000000000000000000000242 109.0
YYD1_k127_5811544_0 DNA ligase K01971 - 6.5.1.1 4.932e-228 731.0
YYD1_k127_5811544_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 509.0
YYD1_k127_5811544_2 ROK family K00845,K00886 - 2.7.1.2,2.7.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 292.0
YYD1_k127_5811544_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000109 203.0
YYD1_k127_5811544_4 Protein of unknown function (DUF421) - - - 0.0000000000000000000000000000000000000000000003077 171.0
YYD1_k127_5811544_5 - - - - 0.00000000000000000000000000000003773 132.0
YYD1_k127_5820270_0 belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 3.573e-219 707.0
YYD1_k127_5820270_1 Belongs to the GcvT family K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000906 378.0
YYD1_k127_5820270_2 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 366.0
YYD1_k127_5820270_3 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000001231 221.0
YYD1_k127_5820270_4 - - - - 0.000000000000000000000000000000000000434 150.0
YYD1_k127_5822161_0 Phospholipase D Active site motif K01115 - 3.1.4.4 2.807e-244 777.0
YYD1_k127_5822161_1 endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008734 271.0
YYD1_k127_5822161_2 Protein of unknown function (DUF3300) - - - 0.00000000000000000000000000000000000000000000302 175.0
YYD1_k127_5822161_3 membrane - - - 0.0000000000000000000000004866 105.0
YYD1_k127_5822161_4 EF-hand domain pair - - - 0.00004968 51.0
YYD1_k127_582309_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1293.0
YYD1_k127_582309_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 4.681e-265 826.0
YYD1_k127_582309_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 8.54e-201 644.0
YYD1_k127_582309_3 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 452.0
YYD1_k127_582309_4 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 304.0
YYD1_k127_582309_5 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 299.0
YYD1_k127_582309_6 RNA methyltransferase K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000002029 216.0
YYD1_k127_582309_7 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000000000000009418 160.0
YYD1_k127_5825955_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1035.0
YYD1_k127_5825955_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1019.0
YYD1_k127_5825955_2 Participates in both transcription termination and antitermination K02600 - - 8.533e-216 679.0
YYD1_k127_5825955_3 tRNA pseudouridylate synthase B C-terminal domain K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000223 282.0
YYD1_k127_5825955_4 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000000000004178 230.0
YYD1_k127_5825955_5 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000000648 173.0
YYD1_k127_5825955_6 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000003042 127.0
YYD1_k127_5825955_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000002043 129.0
YYD1_k127_5825955_8 PFAM CHAD domain containing protein - - - 0.0000000000000000001231 98.0
YYD1_k127_5825955_9 S4 RNA-binding domain K06178 - 5.4.99.22 0.0000000000000000003795 88.0
YYD1_k127_583308_0 ABC-type Fe3 transport system permease component K02011 - - 1.784e-292 913.0
YYD1_k127_583308_1 Belongs to the TPP enzyme family K03336 - 3.7.1.22 6.067e-279 868.0
YYD1_k127_583308_2 ABC-type Fe3 transport system, periplasmic component K02012,K11081 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 528.0
YYD1_k127_583308_3 Xylose isomerase K03335 - 4.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 385.0
YYD1_k127_583308_4 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 379.0
YYD1_k127_583308_5 PFAM Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002109 277.0
YYD1_k127_583308_6 ATP-dependent helicase hrpA K03578 - 3.6.4.13 0.000000000000000000000000000000000000000000000000001971 187.0
YYD1_k127_583308_7 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.000000000000000000001859 103.0
YYD1_k127_584295_0 Protein conserved in bacteria - - - 1.829e-201 644.0
YYD1_k127_584295_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008616 392.0
YYD1_k127_584295_2 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003297 260.0
YYD1_k127_584295_3 PFAM small multidrug resistance protein K11741 - - 0.0000000000000003651 78.0
YYD1_k127_5858410_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.038e-243 765.0
YYD1_k127_5858410_1 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 505.0
YYD1_k127_5858410_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 325.0
YYD1_k127_5858410_3 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007361 278.0
YYD1_k127_5858410_4 G-rich domain on putative tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001987 282.0
YYD1_k127_5858410_5 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004223 279.0
YYD1_k127_5858410_6 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000002921 242.0
YYD1_k127_5858410_7 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000000000000000000000000001119 220.0
YYD1_k127_5858410_8 SurA N-terminal domain - - - 0.000000000000000000000000000000000000000000000006203 186.0
YYD1_k127_5858410_9 O-Antigen ligase - - - 0.000000000000000000000000000000000000006736 162.0
YYD1_k127_5863946_0 NMT1-like family K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 476.0
YYD1_k127_5863946_1 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 406.0
YYD1_k127_5863946_2 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003442 266.0
YYD1_k127_5863946_3 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000007617 62.0
YYD1_k127_587910_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 3.275e-204 654.0
YYD1_k127_587910_1 VWA domain containing CoxE-like protein K09989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 571.0
YYD1_k127_587910_2 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 292.0
YYD1_k127_587910_3 Bacterial extracellular solute-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000002264 223.0
YYD1_k127_587910_4 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K11072 - 3.6.3.30,3.6.3.31 0.00000000000000000000000000000000000000000000000000000006388 199.0
YYD1_k127_587910_5 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000007382 197.0
YYD1_k127_587910_6 Binding-protein-dependent transport systems inner membrane component - - - 0.00000000000000000000000000000000000000000000004086 185.0
YYD1_k127_587910_7 Belongs to the ArsC family K00537 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.20.4.1 0.00000000000000000000000000000000002472 138.0
YYD1_k127_587910_8 FMN-dependent dehydrogenase K00104 - 1.1.3.15 0.0000000000000000000000000002063 117.0
YYD1_k127_590086_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005653 353.0
YYD1_k127_590086_1 PFAM intradiol ring-cleavage dioxygenase K04098 - 1.13.11.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005927 294.0
YYD1_k127_590086_2 META domain K03929 - - 0.000000000000000000000000000000000004828 154.0
YYD1_k127_590086_3 Cupin domain - - - 0.0000000000000001237 85.0
YYD1_k127_590086_4 Patatin-like phospholipase - - - 0.0002039 47.0
YYD1_k127_594455_0 Bacterial DNA polymerase III alpha subunit K14162 - 2.7.7.7 0.0 1262.0
YYD1_k127_594455_1 DNA ligase K01971 - 6.5.1.1 0.0 1255.0
YYD1_k127_594455_10 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001387 291.0
YYD1_k127_594455_11 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001535 273.0
YYD1_k127_594455_12 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006282,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031668,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001020,GO:2001141 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000001405 256.0
YYD1_k127_594455_13 adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000009288 258.0
YYD1_k127_594455_14 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001907 267.0
YYD1_k127_594455_15 IMS family HHH motif K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000006276 247.0
YYD1_k127_594455_16 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002405 243.0
YYD1_k127_594455_17 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000005612 251.0
YYD1_k127_594455_18 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.0000000000000000000000000000000000000000000000003848 183.0
YYD1_k127_594455_19 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000009477 181.0
YYD1_k127_594455_2 Tripartite tricarboxylate transporter TctA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 610.0
YYD1_k127_594455_20 cheY-homologous receiver domain - - - 0.000000000000000000000000000123 120.0
YYD1_k127_594455_21 COG0457 FOG TPR repeat - - - 0.000000000000000000001151 102.0
YYD1_k127_594455_22 PFAM Hpt domain protein - - - 0.0000000000000000003013 91.0
YYD1_k127_594455_3 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 544.0
YYD1_k127_594455_4 surface antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 558.0
YYD1_k127_594455_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 428.0
YYD1_k127_594455_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 429.0
YYD1_k127_594455_7 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 326.0
YYD1_k127_594455_8 major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 325.0
YYD1_k127_594455_9 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 320.0
YYD1_k127_5944580_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004297 509.0
YYD1_k127_5944580_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 373.0
YYD1_k127_5944580_2 Required for insertion of 4Fe-4S clusters K15724 - - 0.00000000000000000000000000000000000000000000000000000000000001499 216.0
YYD1_k127_5944580_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000001844 214.0
YYD1_k127_5944580_4 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000000002628 211.0
YYD1_k127_5944580_5 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000000000000000000000000004807 203.0
YYD1_k127_5944580_6 - - - - 0.0000000000000000000000000000000000000000000000005392 187.0
YYD1_k127_5944580_7 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000004141 166.0
YYD1_k127_5944580_8 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000003477 64.0
YYD1_k127_5977089_0 of ABC transporters with duplicated ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 539.0
YYD1_k127_5977089_1 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.0000000000000000000000000000000000000008231 156.0
YYD1_k127_5977089_2 SMART Cold shock protein K03704 - - 0.000000000000000000000000000038 122.0
YYD1_k127_5985789_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0 1112.0
YYD1_k127_5985789_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 575.0
YYD1_k127_5985789_2 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 413.0
YYD1_k127_5985789_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000006447 188.0
YYD1_k127_5985789_4 Catalyzes the transfer of an acetyl group from acetyl- CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring K18816 GO:0003674,GO:0003824,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0034069,GO:0042221,GO:0046677,GO:0047663,GO:0050896 2.3.1.82 0.00000000000000000000000000000000000000000000000008394 182.0
YYD1_k127_5985789_5 PFAM glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000003133 120.0
YYD1_k127_5985789_6 Protein of unknown function, DUF488 - - - 0.0000000000000000000002511 99.0
YYD1_k127_601775_0 Protein of unknown function (DUF1343) - - - 8.195e-203 638.0
YYD1_k127_601775_1 Amino acid adenylation enzyme thioester reductase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 529.0
YYD1_k127_601775_10 histidine kinase A domain protein - - - 0.000000000000000000000002013 107.0
YYD1_k127_601775_2 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 490.0
YYD1_k127_601775_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 398.0
YYD1_k127_601775_4 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 309.0
YYD1_k127_601775_5 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001118 260.0
YYD1_k127_601775_6 Thioesterase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001939 259.0
YYD1_k127_601775_7 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.000000000000000000000000000000000000000000000000000002339 193.0
YYD1_k127_601775_8 - - - - 0.0000000000000000000000000000000000000334 155.0
YYD1_k127_601775_9 Belongs to the P-Pant transferase superfamily K06133 - - 0.00000000000000000000000000000000000017 156.0
YYD1_k127_6018927_0 Succinyl-CoA ligase like flavodoxin domain - - - 0.0 1238.0
YYD1_k127_6018927_1 ATP citrate lyase citrate-binding - - - 7.639e-230 716.0
YYD1_k127_6018927_2 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 525.0
YYD1_k127_6018927_3 PFAM amine oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001089 295.0
YYD1_k127_6052540_0 elongation factor G K02355 - - 4.416e-290 905.0
YYD1_k127_6052540_1 Domain of unknown function DUF21 K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 542.0
YYD1_k127_6052540_2 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001061 258.0
YYD1_k127_6052540_3 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000003091 204.0
YYD1_k127_6052540_4 Protein of unknown function (DUF2721) - - - 0.00000000000000000005819 98.0
YYD1_k127_6072494_0 FAD dependent oxidoreductase central domain - - - 8.025e-258 812.0
YYD1_k127_6072494_1 binding-protein-dependent transport systems inner membrane component K02011 - - 1.25e-238 753.0
YYD1_k127_6072494_10 transcriptional - - - 0.000000000000000000000000000000000001926 150.0
YYD1_k127_6072494_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000875 561.0
YYD1_k127_6072494_3 Acyl-CoA dehydrogenase, C-terminal domain K06446 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009879 556.0
YYD1_k127_6072494_4 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 492.0
YYD1_k127_6072494_5 TIGRFAM 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 481.0
YYD1_k127_6072494_6 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 471.0
YYD1_k127_6072494_7 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006589 345.0
YYD1_k127_6072494_8 MaoC like domain K18290 - 4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000002697 228.0
YYD1_k127_6072494_9 TIGRFAM HAD-superfamily subfamily IB hydrolase, TIGR01490 - - - 0.000000000000000000000000000000000000000000000000000000000000013 225.0
YYD1_k127_6073382_0 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000002753 211.0
YYD1_k127_6073382_1 Outer membrane protein beta-barrel domain - - - 0.00000000001565 73.0
YYD1_k127_6076737_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 1.542e-200 640.0
YYD1_k127_6076737_1 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 576.0
YYD1_k127_6076737_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 419.0
YYD1_k127_6076737_3 Rubrerythrin - - - 0.0000001681 61.0
YYD1_k127_6081860_0 reductase, alpha subunit K00394 - 1.8.99.2 0.0 1195.0
YYD1_k127_6081860_1 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 359.0
YYD1_k127_6081860_10 - - - - 0.0000000000000000003013 102.0
YYD1_k127_6081860_11 haloacid dehalogenase K01560 - 3.8.1.2 0.0000209 51.0
YYD1_k127_6081860_2 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 345.0
YYD1_k127_6081860_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003517 322.0
YYD1_k127_6081860_4 reductase beta subunit K00395 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 314.0
YYD1_k127_6081860_5 PFAM lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005534 260.0
YYD1_k127_6081860_6 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000000000000000000000000000000000000001051 230.0
YYD1_k127_6081860_7 PUA-like domain K00958 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000001336 219.0
YYD1_k127_6081860_8 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000001594 223.0
YYD1_k127_6081860_9 - - - - 0.0000000000000000001872 88.0
YYD1_k127_6095462_0 Amidohydrolase K03392 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 486.0
YYD1_k127_6095462_1 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001016 269.0
YYD1_k127_6095462_2 HsdM N-terminal domain K03427 - 2.1.1.72 0.000000000000000000000000000499 115.0
YYD1_k127_6095462_3 response regulator receiver - - - 0.0000000000000000000000419 104.0
YYD1_k127_6095462_4 Response regulator receiver - - - 0.0000000000000000000000721 99.0
YYD1_k127_6095564_0 RQC K03654 - 3.6.4.12 2.252e-262 821.0
YYD1_k127_6095564_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 5.598e-204 644.0
YYD1_k127_6095564_10 synthesis repressor, PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000789 250.0
YYD1_k127_6095564_11 ZIP Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000000009426 183.0
YYD1_k127_6095564_12 Cyclophilin-like K09143 - - 0.000000000000000000000000000000000000297 145.0
YYD1_k127_6095564_13 Glycine zipper 2TM domain - - - 0.000000000000000000000000000006712 128.0
YYD1_k127_6095564_14 Polysaccharide biosynthesis protein K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000004229 103.0
YYD1_k127_6095564_15 KTSC domain - - - 0.000000005089 63.0
YYD1_k127_6095564_2 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 1.903e-199 632.0
YYD1_k127_6095564_3 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 9.297e-196 625.0
YYD1_k127_6095564_4 Belongs to the thiolase family K00626 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 592.0
YYD1_k127_6095564_5 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 545.0
YYD1_k127_6095564_6 PFAM Short-chain dehydrogenase reductase SDR K00023 - 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 396.0
YYD1_k127_6095564_7 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 368.0
YYD1_k127_6095564_8 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 332.0
YYD1_k127_6095564_9 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 328.0
YYD1_k127_6100203_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.519e-210 662.0
YYD1_k127_6100203_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006796 577.0
YYD1_k127_6100203_2 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 493.0
YYD1_k127_6100203_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 460.0
YYD1_k127_6100203_4 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007002 458.0
YYD1_k127_6100203_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 462.0
YYD1_k127_6100203_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 444.0
YYD1_k127_6100203_7 cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 364.0
YYD1_k127_6100203_8 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 313.0
YYD1_k127_6100203_9 Cell wall formation K01921 - 6.3.2.4 0.00000000000000000000000000000000000001977 147.0
YYD1_k127_6102447_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 411.0
YYD1_k127_6102447_1 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 381.0
YYD1_k127_6102447_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 346.0
YYD1_k127_6102447_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000004047 248.0
YYD1_k127_6102447_4 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000006991 209.0
YYD1_k127_6102447_5 Permease MlaE K02066 - - 0.00000000000001751 82.0
YYD1_k127_6104209_0 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 1.212e-312 975.0
YYD1_k127_6104209_1 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003832 441.0
YYD1_k127_6104209_2 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 432.0
YYD1_k127_6104209_3 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.00000000000000000000000000002159 120.0
YYD1_k127_6109637_0 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 5.981e-242 752.0
YYD1_k127_6109637_1 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000000000000000005582 196.0
YYD1_k127_6109637_2 mRNA catabolic process - - - 0.000000000000000000000001224 107.0
YYD1_k127_6122644_0 AMP-binding enzyme K12508 - 6.2.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006147 582.0
YYD1_k127_6122644_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 397.0
YYD1_k127_6122644_2 Branched-chain amino acid transport system / permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 381.0
YYD1_k127_6122644_3 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 358.0
YYD1_k127_6122644_4 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000008741 214.0
YYD1_k127_6122644_5 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000001788 189.0
YYD1_k127_6128384_0 Penicillin amidase K01434 - 3.5.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008756 619.0
YYD1_k127_6128384_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000007399 175.0
YYD1_k127_6128384_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000143 185.0
YYD1_k127_6133553_0 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 601.0
YYD1_k127_6133553_1 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005504 461.0
YYD1_k127_6133553_2 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 346.0
YYD1_k127_614023_0 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 444.0
YYD1_k127_614023_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000002522 203.0
YYD1_k127_614023_2 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000002847 163.0
YYD1_k127_614023_3 transcriptional regulator - - - 0.000000000000000000000000000000004777 138.0
YYD1_k127_614023_4 PFAM Cyclic nucleotide-binding K01420,K21563 - - 0.0000000000000000001413 98.0
YYD1_k127_6142936_0 metal-dependent phosphohydrolase HD sub domain - - - 7.514e-230 722.0
YYD1_k127_6142936_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - 4.987e-198 621.0
YYD1_k127_6142936_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 307.0
YYD1_k127_6149367_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 409.0
YYD1_k127_6149367_1 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006629 395.0
YYD1_k127_6149367_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000001681 174.0
YYD1_k127_6149367_3 PFAM response regulator receiver K11443 - - 0.0000000000000000000000000000000001611 136.0
YYD1_k127_6152138_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007396 546.0
YYD1_k127_6152138_1 Pfam Aminotransferase class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 365.0
YYD1_k127_6152138_2 [2Fe-2S] binding domain K00256,K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000007236 227.0
YYD1_k127_6152138_3 Taurine catabolism dioxygenase TauD, TfdA family K03119,K22303 - 1.14.11.17 0.00000000000000000000000000000003003 125.0
YYD1_k127_615912_0 FAD binding domain K10676 - 1.14.13.20 1.11e-229 725.0
YYD1_k127_615912_1 PFAM monooxygenase FAD-binding K05712 - 1.14.13.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 521.0
YYD1_k127_615912_2 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 302.0
YYD1_k127_615912_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 306.0
YYD1_k127_615912_4 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 299.0
YYD1_k127_615912_5 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000007982 243.0
YYD1_k127_615912_6 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000006204 191.0
YYD1_k127_615912_7 Tripartite tricarboxylate transporter family receptor - - - 0.0004132 43.0
YYD1_k127_6162002_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 522.0
YYD1_k127_6162002_1 Queuosine biosynthesis protein K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000489 383.0
YYD1_k127_6162002_2 preprotein translocase subunit YajC K03210 - - 0.0000000000000004137 85.0
YYD1_k127_6165795_0 PrkA AAA domain K07180 - - 3.699e-314 972.0
YYD1_k127_6165795_1 Protein of unknown function (DUF444) K09786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 432.0
YYD1_k127_6165795_2 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 383.0
YYD1_k127_6165795_3 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000245 225.0
YYD1_k127_6165795_4 MAPEG family - - - 0.000000000000000000000000000000000000000002608 158.0
YYD1_k127_6165795_5 - - - - 0.00000000000001803 78.0
YYD1_k127_6166601_0 His Kinase A (phosphoacceptor) domain - - - 1.505e-199 655.0
YYD1_k127_6166601_1 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 612.0
YYD1_k127_6166601_11 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.0000000000004398 76.0
YYD1_k127_6166601_12 ribosome binding - - - 0.0000001691 59.0
YYD1_k127_6166601_13 Serine aminopeptidase, S33 - - - 0.000004882 55.0
YYD1_k127_6166601_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 589.0
YYD1_k127_6166601_3 CoA-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 578.0
YYD1_k127_6166601_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 541.0
YYD1_k127_6166601_5 PFAM MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009567 503.0
YYD1_k127_6166601_6 aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 467.0
YYD1_k127_6166601_7 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007693 359.0
YYD1_k127_6166601_8 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001437 292.0
YYD1_k127_6166601_9 Sterol carrier protein - - - 0.0000000000000000000008779 108.0
YYD1_k127_6170604_0 L-lactate dehydrogenase K00101,K00104 - 1.1.2.3,1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006226 545.0
YYD1_k127_6170604_1 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 500.0
YYD1_k127_6178979_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K04116 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 527.0
YYD1_k127_6178979_1 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 469.0
YYD1_k127_6178979_10 ferredoxin - - - 0.000000000000000000000000000000009444 131.0
YYD1_k127_6178979_11 Short C-terminal domain K08982 - - 0.0000000000000000002748 89.0
YYD1_k127_6178979_12 Protein of unknown function (DUF2892) - - - 0.0000000000003093 75.0
YYD1_k127_6178979_13 Pfam Hemerythrin HHE - - - 0.00000001895 63.0
YYD1_k127_6178979_2 amidohydrolase K03392,K07045 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 393.0
YYD1_k127_6178979_3 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002193 260.0
YYD1_k127_6178979_4 KR domain K07535 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002252 253.0
YYD1_k127_6178979_5 amino acid ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000001868 228.0
YYD1_k127_6178979_6 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000399 213.0
YYD1_k127_6178979_7 COG0559 Branched-chain amino acid ABC-type transport system, permease components - - - 0.0000000000000000000000000000000000000000000000000000000009843 220.0
YYD1_k127_6178979_8 COG4177 ABC-type branched-chain amino acid transport system, permease component - - - 0.00000000000000000000000000000000000000000000000000001304 207.0
YYD1_k127_6178979_9 DGC domain - - - 0.000000000000000000000000000000000000000001884 161.0
YYD1_k127_617927_0 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 1.371e-217 689.0
YYD1_k127_617927_1 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 507.0
YYD1_k127_617927_2 Class II aldolase K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000000000006783 232.0
YYD1_k127_617927_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000001858 149.0
YYD1_k127_617927_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000176 103.0
YYD1_k127_6186688_0 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 381.0
YYD1_k127_6186688_1 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000945 192.0
YYD1_k127_6186688_2 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000426 194.0
YYD1_k127_6193153_0 Redoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000009955 223.0
YYD1_k127_6193153_1 Domain of unknown function (DUF4112) - - - 0.00000000000000000000000000000000000001118 149.0
YYD1_k127_6193153_2 protein conserved in bacteria - - - 0.0000000000000000000008003 100.0
YYD1_k127_6193153_3 Hydrolase, TatD family K03424 - - 0.000000002094 66.0
YYD1_k127_6200743_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1230.0
YYD1_k127_6200743_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 1.892e-195 616.0
YYD1_k127_6200743_10 Protein of unknown function (DUF721) - - - 0.0002242 50.0
YYD1_k127_6200743_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 483.0
YYD1_k127_6200743_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006393 415.0
YYD1_k127_6200743_4 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007142 417.0
YYD1_k127_6200743_5 Peptidase family M23 K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 313.0
YYD1_k127_6200743_6 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.0000000000000000000000000000000000000000000001886 175.0
YYD1_k127_6200743_7 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000535 97.0
YYD1_k127_6200743_8 PAS fold - - - 0.000000000000002607 86.0
YYD1_k127_6200743_9 Cell wall formation K00075 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008762,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0055114,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 1.3.1.98 0.00000000001471 65.0
YYD1_k127_6202721_0 PFAM cytochrome bd ubiquinol oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006374 559.0
YYD1_k127_6202721_1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003429 518.0
YYD1_k127_6202721_2 cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 365.0
YYD1_k127_6202721_3 Phosphoenolpyruvate phosphomutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007053 349.0
YYD1_k127_6202721_4 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000002188 138.0
YYD1_k127_6204737_0 ACT domain K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005648 595.0
YYD1_k127_6204737_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 525.0
YYD1_k127_6204737_10 metal-dependent enzyme of the double-stranded beta helix superfamily - - - 0.0000000007279 67.0
YYD1_k127_6204737_2 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 438.0
YYD1_k127_6204737_3 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 433.0
YYD1_k127_6204737_4 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 431.0
YYD1_k127_6204737_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 315.0
YYD1_k127_6204737_6 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008414 278.0
YYD1_k127_6204737_7 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007968 259.0
YYD1_k127_6204737_8 PAS fold - - - 0.0000000000000000000000000000000007493 142.0
YYD1_k127_6204737_9 peptidase S1 and S6, chymotrypsin Hap - - - 0.000000000000000000000000000295 113.0
YYD1_k127_6208599_0 homoserine dehydrogenase K00003 - 1.1.1.3 2.732e-202 637.0
YYD1_k127_6208599_1 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 614.0
YYD1_k127_6208599_2 Aminotransferase class I and II K14261 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 437.0
YYD1_k127_6208599_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005064 260.0
YYD1_k127_6208599_4 Uncharacterized protein conserved in bacteria (DUF2237) K09966 - - 0.0000000000002318 74.0
YYD1_k127_6230817_0 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 430.0
YYD1_k127_6230817_1 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008722 407.0
YYD1_k127_6230817_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007293 293.0
YYD1_k127_6230817_3 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003566 263.0
YYD1_k127_6230817_4 ABC transporter, phosphonate, periplasmic substrate-binding protein K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002638 259.0
YYD1_k127_6230817_5 Electron transfer flavoprotein-ubiquinone K00311 - 1.5.5.1 0.0000000000000000000000009143 119.0
YYD1_k127_6238080_0 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000644 430.0
YYD1_k127_6238080_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 396.0
YYD1_k127_6238080_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 386.0
YYD1_k127_6238080_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006911 331.0
YYD1_k127_6247344_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 440.0
YYD1_k127_6247344_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 410.0
YYD1_k127_6247344_2 Transcriptional regulatory protein, C terminal K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 307.0
YYD1_k127_6247344_3 Pfam Sulfatase K01133 - 3.1.6.6 0.0000000000000000000000000000000000000000000000000000000000000000001796 235.0
YYD1_k127_6247344_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000006839 220.0
YYD1_k127_6247344_5 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000001115 168.0
YYD1_k127_6247344_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K12976 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008653,GO:0009279,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0016788,GO:0019637,GO:0019867,GO:0030312,GO:0030313,GO:0031224,GO:0031975,GO:0042802,GO:0042803,GO:0043170,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044425,GO:0044462,GO:0044464,GO:0046493,GO:0046983,GO:0050528,GO:0052689,GO:0071704,GO:0071944,GO:1901135,GO:1901269,GO:1903509 - 0.0000000000000008414 80.0
YYD1_k127_6247344_7 PFAM response regulator receiver K13599 - - 0.000000000002359 74.0
YYD1_k127_6260657_0 FAD binding domain K00480 - 1.14.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 429.0
YYD1_k127_6260657_1 Major facilitator superfamily K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 348.0
YYD1_k127_6260657_2 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 301.0
YYD1_k127_6260657_3 Esterase PHB depolymerase K05973 - 3.1.1.75 0.000000000000000000000000000000000000000000000000000001823 204.0
YYD1_k127_6281772_0 GcpE protein K03526 - 1.17.7.1,1.17.7.3 3.556e-196 619.0
YYD1_k127_6281772_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 572.0
YYD1_k127_6281772_10 type 4 pilus biogenesis protein K02656 - - 0.000000000000000000000000000000000000000000000000000000000000000000006039 243.0
YYD1_k127_6281772_11 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000009097 228.0
YYD1_k127_6281772_12 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000004011 205.0
YYD1_k127_6281772_13 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000639 207.0
YYD1_k127_6281772_14 Transcriptional regulator K15539 - - 0.000000000000000000000000000000000001102 151.0
YYD1_k127_6281772_15 WHG domain - - - 0.00000000000000000000000007154 113.0
YYD1_k127_6281772_16 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000001176 94.0
YYD1_k127_6281772_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 507.0
YYD1_k127_6281772_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 509.0
YYD1_k127_6281772_4 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669 422.0
YYD1_k127_6281772_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005359 377.0
YYD1_k127_6281772_6 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 334.0
YYD1_k127_6281772_7 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009815 306.0
YYD1_k127_6281772_8 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003041 268.0
YYD1_k127_6281772_9 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000005879 245.0
YYD1_k127_6284_0 ABC transporter K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 490.0
YYD1_k127_6284_1 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007558 391.0
YYD1_k127_6284_2 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 366.0
YYD1_k127_6284_3 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002289 248.0
YYD1_k127_6284_4 Twin-arginine translocation pathway signal protein - - - 0.0000000000000000000000000000000000000000000000000000000000005196 220.0
YYD1_k127_6284_5 NMT1-like family - - - 0.00000000000000000000005004 100.0
YYD1_k127_629161_0 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 416.0
YYD1_k127_629161_1 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 439.0
YYD1_k127_629161_2 acid transport K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 387.0
YYD1_k127_629161_3 acid transport system permease K09970 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008035 360.0
YYD1_k127_629161_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 299.0
YYD1_k127_629161_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001435 276.0
YYD1_k127_629161_6 Peptidase family M3 - - - 0.000000000000000000000000000000000000000000000000000006292 194.0
YYD1_k127_6337608_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1200.0
YYD1_k127_6337608_1 Sporulation related domain - - - 0.00000000000000000001244 100.0
YYD1_k127_6337608_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000002709 86.0
YYD1_k127_6353446_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 5.927e-296 943.0
YYD1_k127_6353446_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 2.205e-291 912.0
YYD1_k127_6353446_10 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003365 351.0
YYD1_k127_6353446_11 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 379.0
YYD1_k127_6353446_12 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 349.0
YYD1_k127_6353446_13 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000949 351.0
YYD1_k127_6353446_14 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 314.0
YYD1_k127_6353446_15 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000001336 261.0
YYD1_k127_6353446_16 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000019 256.0
YYD1_k127_6353446_17 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000008544 254.0
YYD1_k127_6353446_18 phosphoribosyltransferase K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000001408 216.0
YYD1_k127_6353446_19 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000001112 234.0
YYD1_k127_6353446_2 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 487.0
YYD1_k127_6353446_20 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000002144 191.0
YYD1_k127_6353446_21 Belongs to the skp family K06142 - - 0.000000000000000000000000000000000000000000000221 175.0
YYD1_k127_6353446_22 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000004494 179.0
YYD1_k127_6353446_23 Putative peptidoglycan binding domain - - - 0.00000000000000000004961 96.0
YYD1_k127_6353446_3 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002071 459.0
YYD1_k127_6353446_4 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 428.0
YYD1_k127_6353446_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 419.0
YYD1_k127_6353446_6 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000997 407.0
YYD1_k127_6353446_7 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 397.0
YYD1_k127_6353446_8 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 400.0
YYD1_k127_6353446_9 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 365.0
YYD1_k127_6358315_0 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 6.169e-279 867.0
YYD1_k127_6358315_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 339.0
YYD1_k127_6358315_2 Belongs to the LDH2 MDH2 oxidoreductase family K13574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003961 273.0
YYD1_k127_6358315_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000332 258.0
YYD1_k127_6360162_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 1.205e-264 818.0
YYD1_k127_6360162_1 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 7.357e-221 692.0
YYD1_k127_6360162_10 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 355.0
YYD1_k127_6360162_11 Lipid A Biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 328.0
YYD1_k127_6360162_12 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 311.0
YYD1_k127_6360162_13 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 291.0
YYD1_k127_6360162_14 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001069 284.0
YYD1_k127_6360162_15 COG0685 5,10-methylenetetrahydrofolate reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002584 277.0
YYD1_k127_6360162_16 PFAM oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003249 273.0
YYD1_k127_6360162_17 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000001775 278.0
YYD1_k127_6360162_18 Lipid A Biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.000000000000000000000000000000000000000000000000000000000000000000000000000176 266.0
YYD1_k127_6360162_19 membrane-bound metal-dependent K07038 - - 0.00000000000000000000000000000000000000000000000000000000000000000001832 240.0
YYD1_k127_6360162_2 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 5.401e-194 613.0
YYD1_k127_6360162_20 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000000008353 231.0
YYD1_k127_6360162_21 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000004496 211.0
YYD1_k127_6360162_22 Protein of unknown function (DUF3299) K09950 - - 0.000000000000000000000000000000000000000002323 161.0
YYD1_k127_6360162_23 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.000000000000000000000000000001394 128.0
YYD1_k127_6360162_24 - - - - 0.00000000000000000001582 93.0
YYD1_k127_6360162_25 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000003382 61.0
YYD1_k127_6360162_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 605.0
YYD1_k127_6360162_4 Cobalamin synthesis protein cobW C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009205 465.0
YYD1_k127_6360162_5 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 457.0
YYD1_k127_6360162_6 Methionine synthase K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000746 389.0
YYD1_k127_6360162_7 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006726 387.0
YYD1_k127_6360162_8 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 389.0
YYD1_k127_6360162_9 PFAM Extradiol ring-cleavage dioxygenase, class III K04101 - 1.13.11.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000973 351.0
YYD1_k127_6374021_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 2.564e-243 773.0
YYD1_k127_6374021_1 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009363 475.0
YYD1_k127_6374021_10 membrane transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000003073 226.0
YYD1_k127_6374021_11 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000163 189.0
YYD1_k127_6374021_12 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs - - - 0.000000000000000000000000000000000000000000000000005052 188.0
YYD1_k127_6374021_13 Protein of unknown function (DUF1428) - - - 0.00000000000000000000000000000000000000000000000002218 182.0
YYD1_k127_6374021_14 Domain of unknown function (DUF427) - - - 0.0000000000000000000000000000001484 132.0
YYD1_k127_6374021_15 SnoaL-like domain - - - 0.000000000000001245 87.0
YYD1_k127_6374021_16 translation initiation factor activity K06996 - - 0.00002597 51.0
YYD1_k127_6374021_2 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004925 447.0
YYD1_k127_6374021_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006167 385.0
YYD1_k127_6374021_4 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 387.0
YYD1_k127_6374021_5 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003053 369.0
YYD1_k127_6374021_6 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000592 283.0
YYD1_k127_6374021_7 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000001769 273.0
YYD1_k127_6374021_8 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001978 252.0
YYD1_k127_6374021_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000005958 230.0
YYD1_k127_6379124_0 haloacid dehalogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 282.0
YYD1_k127_6379124_1 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000000000000000000000000000000000000000000000000109 207.0
YYD1_k127_6379124_2 transcriptional regulator - - - 0.00000000000000000000000000000000000000001651 160.0
YYD1_k127_6380817_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 1.451e-250 782.0
YYD1_k127_6380817_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000007818 231.0
YYD1_k127_6394362_0 epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008786 454.0
YYD1_k127_6394362_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005213 362.0
YYD1_k127_6394362_2 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008918 358.0
YYD1_k127_6394362_3 Bacterial regulatory helix-turn-helix protein, lysR family K18900 - - 0.000000000000000000000000000000000000000000000000000000000000000000007987 244.0
YYD1_k127_6394362_4 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000003329 179.0
YYD1_k127_6394362_5 PAS fold - - - 0.000000000000000000000000000000008552 131.0
YYD1_k127_6396213_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008912 404.0
YYD1_k127_6396213_1 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 394.0
YYD1_k127_6396213_2 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 346.0
YYD1_k127_6396213_3 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000004709 239.0
YYD1_k127_6396213_4 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000001823 230.0
YYD1_k127_6396213_5 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000002564 228.0
YYD1_k127_6396213_6 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000003291 208.0
YYD1_k127_6396213_7 rieske 2fe-2s - - - 0.000000000000000000000000000000001134 135.0
YYD1_k127_6396213_8 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.0000000000000000000000005136 113.0
YYD1_k127_6396213_9 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000004658 102.0
YYD1_k127_6397696_0 DEAD DEAH box K03724 - - 9.144e-286 896.0
YYD1_k127_6397696_1 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 9.451e-216 678.0
YYD1_k127_6397696_2 KR domain K00038 - 1.1.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 344.0
YYD1_k127_6405957_0 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 291.0
YYD1_k127_6405957_1 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000000000000000000105 121.0
YYD1_k127_6405957_3 COG4206 Outer membrane cobalamin receptor protein K02014,K16092 - - 0.0001872 48.0
YYD1_k127_6409530_0 TIGRFAM ATP-dependent Clp protease ATP-binding subunit clpA K03694 - - 0.0 1036.0
YYD1_k127_6409530_1 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000003137 162.0
YYD1_k127_6409530_2 Cold shock K03704 - - 0.00000000000000000000000000000000002392 135.0
YYD1_k127_6409530_3 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000008491 89.0
YYD1_k127_6414931_0 4Fe-4S dicluster domain - - - 7.474e-232 738.0
YYD1_k127_6414931_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 481.0
YYD1_k127_6414931_10 Protein of unknown function (DUF3306) - - - 0.00000000000000000005764 95.0
YYD1_k127_6414931_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 474.0
YYD1_k127_6414931_3 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 377.0
YYD1_k127_6414931_4 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 391.0
YYD1_k127_6414931_5 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000294 248.0
YYD1_k127_6414931_6 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000000000000000000009949 256.0
YYD1_k127_6414931_7 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002739 254.0
YYD1_k127_6414931_8 Protein of unknown function (DUF3305) - - - 0.00000000000000000000000000000000000001602 149.0
YYD1_k127_6414931_9 Nitrate reductase delta subunit - - - 0.0000000000000000000000000000000000001931 150.0
YYD1_k127_6415508_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1374.0
YYD1_k127_6415508_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 2.278e-313 977.0
YYD1_k127_6415508_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 468.0
YYD1_k127_6415508_3 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 387.0
YYD1_k127_6415508_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001548 274.0
YYD1_k127_6415508_5 Isochorismatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001818 244.0
YYD1_k127_6415508_6 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.0000000000000000000000000000000000000000000000000000000000000001036 228.0
YYD1_k127_6415508_7 Inorganic ion transport and metabolism K06202 - - 0.0000000000000000000000000000009096 123.0
YYD1_k127_6415508_8 - - - - 0.0000000000000000243 91.0
YYD1_k127_6415508_9 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.0000879 45.0
YYD1_k127_6430140_0 Branched-chain amino acid transport system permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 398.0
YYD1_k127_6430140_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000002069 175.0
YYD1_k127_6430140_2 branched-chain amino acid K01995,K01996 - - 0.00000000000000000000000000000000001252 138.0
YYD1_k127_6431397_0 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004873 507.0
YYD1_k127_6431397_1 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004144 358.0
YYD1_k127_6431397_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 329.0
YYD1_k127_6431397_3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020,K00042 - 1.1.1.31,1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000006376 228.0
YYD1_k127_6431397_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000003219 102.0
YYD1_k127_644668_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005822 299.0
YYD1_k127_644668_1 KR domain K07535 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 301.0
YYD1_k127_644668_2 translation initiation inhibitor, yjgF family - - - 0.0000000000000000000000000000000000000000000000389 182.0
YYD1_k127_644668_3 Rubrerythrin - - - 0.00000000000000000000000000000000185 143.0
YYD1_k127_644668_4 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.00000000001435 66.0
YYD1_k127_644668_5 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000001472 59.0
YYD1_k127_6447000_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 5.03e-267 835.0
YYD1_k127_6447000_1 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 577.0
YYD1_k127_6447000_10 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005372 372.0
YYD1_k127_6447000_11 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 351.0
YYD1_k127_6447000_12 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 338.0
YYD1_k127_6447000_13 Hydantoinase B/oxoprolinase K01469 - 3.5.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 291.0
YYD1_k127_6447000_14 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 294.0
YYD1_k127_6447000_15 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003555 283.0
YYD1_k127_6447000_16 Sugar (and other) transporter K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000003041 237.0
YYD1_k127_6447000_17 Bacterial protein of unknown function (DUF899) K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000006253 213.0
YYD1_k127_6447000_18 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000003429 199.0
YYD1_k127_6447000_19 Domain of unknown function (DUF1835) - - - 0.000000000000000000000000000000000000000000000000002611 198.0
YYD1_k127_6447000_2 SMART phosphoesterase PHP domain protein K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007614 557.0
YYD1_k127_6447000_20 transport system small permease component - - - 0.00000000000000000000000000000000000000000000004778 174.0
YYD1_k127_6447000_21 pathogenesis - - - 0.0000000000000000000000000000000000000000005495 170.0
YYD1_k127_6447000_22 FKBP-type peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000000000000000000000000009948 143.0
YYD1_k127_6447000_23 - - - - 0.00000000000000000006178 102.0
YYD1_k127_6447000_24 IA, variant 3 K07025,K20866 - 3.1.3.10 0.00000000001201 74.0
YYD1_k127_6447000_3 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 491.0
YYD1_k127_6447000_4 Fad dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 469.0
YYD1_k127_6447000_5 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 446.0
YYD1_k127_6447000_6 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 427.0
YYD1_k127_6447000_7 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 433.0
YYD1_k127_6447000_8 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 419.0
YYD1_k127_6447000_9 (Lipo)protein K07287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004454 386.0
YYD1_k127_645225_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 3.67e-307 948.0
YYD1_k127_645225_1 4,5-dihydroxyphthalate decarboxylase K04102 - 4.1.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 351.0
YYD1_k127_645225_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004021 282.0
YYD1_k127_6482798_0 histidine kinase A domain protein - - - 7.237e-243 770.0
YYD1_k127_6482798_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001532 276.0
YYD1_k127_6482798_2 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000004744 188.0
YYD1_k127_6482798_3 TIGRFAM PAS sensor protein - - - 0.00000000000000000000000000000001051 139.0
YYD1_k127_6488174_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01583 - 4.1.1.19 1.236e-279 872.0
YYD1_k127_6488174_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 7.334e-196 623.0
YYD1_k127_6488174_2 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000005945 243.0
YYD1_k127_6488174_3 Protein of unknown function (DUF962) - - - 0.000000000000000000000000000000000000000000002818 174.0
YYD1_k127_6488174_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000009096 123.0
YYD1_k127_6488174_5 OmpA-like transmembrane domain - - - 0.0000000000000000000000000007722 120.0
YYD1_k127_6488174_6 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000001292 91.0
YYD1_k127_6489069_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 1.543e-205 648.0
YYD1_k127_6489069_1 PFAM fumarylacetoacetate (FAA) hydrolase K18336 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 404.0
YYD1_k127_6489069_2 Short-chain dehydrogenase reductase sdr K18335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 313.0
YYD1_k127_6489069_3 Enoyl-(Acyl carrier protein) reductase K21883 - 1.1.1.401 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 312.0
YYD1_k127_6489069_4 Dehydratase family K13875 - 4.2.1.25 0.00000000000000000000000005598 106.0
YYD1_k127_6528556_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 4.252e-240 746.0
YYD1_k127_6528556_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005228 276.0
YYD1_k127_6528556_2 ubiE/COQ5 methyltransferase family K03183 - 2.1.1.163,2.1.1.201 0.00001934 48.0
YYD1_k127_6572963_0 Aldehyde oxidase and xanthine dehydrogenase K03520 - 1.2.5.3 5.46e-257 814.0
YYD1_k127_6572963_1 amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 503.0
YYD1_k127_6572963_2 aminopeptidase activity K18028 - 1.13.11.9 0.0000000000000000000000000000000000000000000000000000000000000000004848 241.0
YYD1_k127_6572963_3 Haem-degrading - - - 0.0000000000000000000000000000000000000000000000000000000000004263 220.0
YYD1_k127_6572963_4 CoA-transferase family III - - - 0.0000000000000000000000000000188 121.0
YYD1_k127_6572963_5 Cupin domain K00450 - 1.13.11.4 0.0000000000003462 72.0
YYD1_k127_6581816_0 AcrB/AcrD/AcrF family K03296,K18138,K18902 - - 1.053e-262 816.0
YYD1_k127_6581816_1 Outer membrane efflux protein K18903 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 546.0
YYD1_k127_6581816_2 - - - - 0.000000000000000000000000005414 117.0
YYD1_k127_658925_0 Ketopantoate hydroxymethyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008636 506.0
YYD1_k127_658925_1 Fatty acid hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007006 393.0
YYD1_k127_658925_2 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001742 263.0
YYD1_k127_658925_3 Zinc-binding dehydrogenase K00344 GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003960,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016651,GO:0016655,GO:0017091,GO:0033554,GO:0034599,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097159,GO:1901363 1.6.5.5 0.0000000000582 64.0
YYD1_k127_6624662_0 AMP-binding enzyme K01895 - 6.2.1.1 7.972e-202 636.0
YYD1_k127_6624662_1 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000001251 236.0
YYD1_k127_6643649_0 Putative neutral zinc metallopeptidase K07054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 321.0
YYD1_k127_6643649_1 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005196 247.0
YYD1_k127_6643649_2 Exonuclease - - - 0.00000000000000000000000000000000000000004906 159.0
YYD1_k127_6643649_3 psiF repeat - - - 0.000000000000000000000000000001079 126.0
YYD1_k127_6643649_4 Bacterial protein of unknown function (DUF937) - - - 0.00000000007246 66.0
YYD1_k127_6643649_5 CBS domain containing protein K07182 - - 0.000000000273 67.0
YYD1_k127_6643649_6 PFAM Bacterial protein of - - - 0.000000109 57.0
YYD1_k127_6643649_7 Protein of unknown function (DUF2934) - - - 0.000005307 51.0
YYD1_k127_6644073_0 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 460.0
YYD1_k127_6644073_1 Dehydrogenase K15054 - 1.1.99.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 396.0
YYD1_k127_6644073_10 Rhodanese Homology Domain - - - 0.0002688 44.0
YYD1_k127_6644073_2 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 395.0
YYD1_k127_6644073_3 nuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004425 375.0
YYD1_k127_6644073_4 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007497 370.0
YYD1_k127_6644073_5 Ring hydroxylating alpha subunit (catalytic domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009977 317.0
YYD1_k127_6644073_6 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000402 203.0
YYD1_k127_6644073_7 esterase K01432 - 3.5.1.9 0.0000000000000000000000000000000000000000000000000000003649 203.0
YYD1_k127_6644073_8 PFAM aromatic-ring-hydroxylating dioxygenase beta subunit - - - 0.0000000000000000000000000196 114.0
YYD1_k127_6644073_9 Predicted membrane protein (DUF2061) - - - 0.00000000000000002355 84.0
YYD1_k127_6646095_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 3.916e-301 932.0
YYD1_k127_6646095_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008083 586.0
YYD1_k127_6646095_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 396.0
YYD1_k127_6646095_3 negative regulator of sigma E activity K03598 - - 0.000000000000000000000000000000000000000000000000000000000000000000004333 252.0
YYD1_k127_6646095_4 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000005251 193.0
YYD1_k127_6646095_5 Anti sigma-E protein RseA, N-terminal domain K03597 - - 0.000000000000000000000001942 108.0
YYD1_k127_6646095_6 Domain of unknown function (DUF4845) - - - 0.00000000002756 68.0
YYD1_k127_6646095_7 Glutaredoxin-like domain (DUF836) - - - 0.0000000001631 65.0
YYD1_k127_6651433_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 539.0
YYD1_k127_6651433_1 PFAM MotA TolQ ExbB proton channel K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 315.0
YYD1_k127_6651433_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001863 271.0
YYD1_k127_6651433_3 TonB C terminal K03646 - - 0.0000000000000000000000000000000000008903 149.0
YYD1_k127_6651433_4 Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000002975 131.0
YYD1_k127_6651433_5 PFAM thioesterase superfamily protein K07107 - - 0.0000000000000000000000000000003831 128.0
YYD1_k127_665497_0 FtsX-like permease family K02004 - - 3.894e-226 726.0
YYD1_k127_665497_1 Lipocalin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 366.0
YYD1_k127_665497_2 Thioredoxin-like K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 334.0
YYD1_k127_665497_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002366 315.0
YYD1_k127_665497_4 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005119 283.0
YYD1_k127_665497_5 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.0000000000000000000000000000000000000000000000000000000000000000006712 232.0
YYD1_k127_665497_6 Solute carrier family 35 - - - 0.0000000000000000000000000000000000000003004 160.0
YYD1_k127_665497_7 Protein of unknown function (DUF3568) - - - 0.00000000000000000003366 101.0
YYD1_k127_665497_8 Rubrerythrin - - - 0.0000000271 60.0
YYD1_k127_6662235_0 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 608.0
YYD1_k127_6662235_1 amino acid transport system, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 420.0
YYD1_k127_6662235_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007741 244.0
YYD1_k127_6663346_0 Trap dicarboxylate transporter, dctm subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007506 554.0
YYD1_k127_6663346_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 524.0
YYD1_k127_6663346_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 505.0
YYD1_k127_6663346_3 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 442.0
YYD1_k127_6663346_4 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 383.0
YYD1_k127_6663346_5 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 361.0
YYD1_k127_6663346_6 LysR substrate binding domain K10972 - - 0.000000000000000000000000000000000000000000000000000000000000009522 227.0
YYD1_k127_6663346_7 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.00000000000000000000000000000000000000000000002112 176.0
YYD1_k127_6663346_8 SMART Cold shock protein K03704 - - 0.00000000000000000000000000004443 119.0
YYD1_k127_6663346_9 Translation initiation factor 1A / IF-1 K02518 - - 0.000000000000000000000002785 114.0
YYD1_k127_6663485_0 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749,K14471,K14472 - 2.8.3.16,2.8.3.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 495.0
YYD1_k127_6663485_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 483.0
YYD1_k127_6663485_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000001628 206.0
YYD1_k127_6663485_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000002117 166.0
YYD1_k127_6663485_4 Histidine kinase - - - 0.0000000000000000000003249 106.0
YYD1_k127_6663485_5 histidine kinase HAMP region domain protein - - - 0.0000000000000001488 87.0
YYD1_k127_6663485_6 N-terminal half of MaoC dehydratase - - - 0.00005036 45.0
YYD1_k127_6663485_7 - - - - 0.000885 46.0
YYD1_k127_6667825_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 6.643e-247 772.0
YYD1_k127_6667825_1 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 490.0
YYD1_k127_6667825_2 Ketopantoate reductase PanE/ApbA C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 429.0
YYD1_k127_6667825_3 Taurine catabolism dioxygenase TauD, TfdA family K03119,K22303 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005873 379.0
YYD1_k127_6667825_4 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003181 242.0
YYD1_k127_6667825_5 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000008464 207.0
YYD1_k127_6669854_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007568 536.0
YYD1_k127_6669854_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003359 392.0
YYD1_k127_6669854_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008598 352.0
YYD1_k127_6669854_3 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 330.0
YYD1_k127_6669854_4 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003199 288.0
YYD1_k127_6669854_5 Benzoate-CoA ligase family K04110 - 6.2.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000004651 255.0
YYD1_k127_6669854_6 Vitamin k epoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002942 263.0
YYD1_k127_6669854_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000004908 170.0
YYD1_k127_6670510_0 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006298 591.0
YYD1_k127_6670510_1 Pyridine nucleotide-disulphide oxidoreductase K07222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 495.0
YYD1_k127_6670510_2 - - - - 0.000000000000000000000004702 102.0
YYD1_k127_6670510_3 GGDEF domain - - - 0.000000005184 63.0
YYD1_k127_6681732_0 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749,K14471,K14472 - 2.8.3.16,2.8.3.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 503.0
YYD1_k127_6681732_1 Maleate cis-trans isomerase K01799 - 5.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 297.0
YYD1_k127_6681732_2 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000000000000004147 173.0
YYD1_k127_6681732_3 TRAP transporter solute receptor TAXI family protein - - - 0.0000000000000000000000000000000000000000000001876 173.0
YYD1_k127_6681732_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000003695 164.0
YYD1_k127_6681732_5 AraC-like ligand binding domain - - - 0.00000000000002183 82.0
YYD1_k127_668187_0 UDP binding domain K02474 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 610.0
YYD1_k127_668187_1 epimerase dehydratase K02473,K08679 - 5.1.3.6,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 394.0
YYD1_k127_668187_2 polysaccharide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000004113 243.0
YYD1_k127_668187_3 Glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000001524 249.0
YYD1_k127_6682668_0 Tripartite tricarboxylate transporter TctA family - - - 1.994e-195 620.0
YYD1_k127_6682668_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005935 489.0
YYD1_k127_6682668_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005427 272.0
YYD1_k127_6682668_3 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000002851 245.0
YYD1_k127_6682668_4 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000005215 124.0
YYD1_k127_66851_0 Peptidase M48 Ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 370.0
YYD1_k127_66851_1 - - - - 0.00000000000000000000000000000000000000000000000000000007785 203.0
YYD1_k127_66851_2 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.00000000000000000000000000000000000000009053 153.0
YYD1_k127_66851_3 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000001723 149.0
YYD1_k127_66851_4 - - - - 0.00000000000000000000000000000000000292 153.0
YYD1_k127_6689645_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 2.328e-212 680.0
YYD1_k127_6689645_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 7.647e-210 664.0
YYD1_k127_6689645_10 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000411 122.0
YYD1_k127_6689645_11 - - - - 0.000000000000004399 76.0
YYD1_k127_6689645_2 TonB dependent receptor K02014 - - 1.155e-200 646.0
YYD1_k127_6689645_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007675 466.0
YYD1_k127_6689645_4 PFAM glycosyl transferase family 9 K02849 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 430.0
YYD1_k127_6689645_5 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003171 282.0
YYD1_k127_6689645_6 EVE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002975 229.0
YYD1_k127_6689645_7 Thiol disulfide interchange protein K03673 - - 0.000000000000000000000000000000000000000000001442 188.0
YYD1_k127_6689645_8 PFAM Sporulation domain protein - - - 0.000000000000000000000000000000000000000005964 163.0
YYD1_k127_6689645_9 KR domain - - - 0.00000000000000000000000000000000000004041 148.0
YYD1_k127_6711127_0 Extracellular ligand-binding receptor K01999 - - 3.413e-205 651.0
YYD1_k127_6711127_1 methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 423.0
YYD1_k127_6711127_10 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01995 - - 0.00000000000000000000000000000000000000000000000000001018 199.0
YYD1_k127_6711127_11 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000001666 116.0
YYD1_k127_6711127_12 Luciferase-like monooxygenase - - - 0.000000000001752 68.0
YYD1_k127_6711127_2 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 412.0
YYD1_k127_6711127_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000994 408.0
YYD1_k127_6711127_4 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006109 322.0
YYD1_k127_6711127_5 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009077 310.0
YYD1_k127_6711127_6 NAD dependent epimerase/dehydratase family K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 287.0
YYD1_k127_6711127_7 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004866 252.0
YYD1_k127_6711127_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000005256 248.0
YYD1_k127_6711127_9 Sugar isomerase (SIS) - - - 0.0000000000000000000000000000000000000000000000000000000000000001388 232.0
YYD1_k127_6738527_0 Flavin-binding monooxygenase-like - - - 5.998e-244 778.0
YYD1_k127_6738527_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 320.0
YYD1_k127_6738527_2 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000004763 154.0
YYD1_k127_6738527_3 Fumarate reductase flavoprotein C-term - - - 0.0000000000000002594 81.0
YYD1_k127_673974_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1780.0
YYD1_k127_6747292_0 Catalytic subunit of the nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC. Essential function for nitrate assimilation and may have a role in anaerobic metabolism K02567 - - 0.0 1351.0
YYD1_k127_6747292_1 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 0.0 1033.0
YYD1_k127_6747292_10 universal stress protein - - - 0.0000000000000000000000000000119 131.0
YYD1_k127_6747292_11 Rubrerythrin - - - 0.0000000000000000003574 95.0
YYD1_k127_6747292_12 bacterial OsmY and nodulation domain K04065 - - 0.000000000000002609 80.0
YYD1_k127_6747292_13 Hemerythrin HHE cation binding domain - - - 0.0000007509 53.0
YYD1_k127_6747292_14 - - - - 0.00001508 53.0
YYD1_k127_6747292_15 COG4459 Periplasmic nitrate reductase system, NapE component K02571 - - 0.00001745 55.0
YYD1_k127_6747292_2 Respiratory nitrate reductase beta C-terminal K00371,K17051 - 1.7.5.1 1.246e-285 891.0
YYD1_k127_6747292_3 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 522.0
YYD1_k127_6747292_4 NapC/NirT cytochrome c family, N-terminal region K02569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 329.0
YYD1_k127_6747292_5 Nitrate reductase K00374 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 295.0
YYD1_k127_6747292_6 Nitrate reductase, delta subunit K00373 - - 0.0000000000000000000000000000000000000000000001592 178.0
YYD1_k127_6747292_7 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.00000000000000000000000000000000000000000008311 171.0
YYD1_k127_6747292_8 - - - - 0.0000000000000000000000000000000000000003665 156.0
YYD1_k127_6747292_9 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000006159 151.0
YYD1_k127_6768614_0 catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-acp K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 9.385e-198 622.0
YYD1_k127_6768614_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 442.0
YYD1_k127_6768614_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 381.0
YYD1_k127_6768614_3 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007934 332.0
YYD1_k127_6768614_4 TIGRFAM RNA polymerase sigma factor RpoE K03088 - - 0.000000000000000000000000000000000000001946 149.0
YYD1_k127_6768614_5 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000003204 135.0
YYD1_k127_6768614_6 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000009307 102.0
YYD1_k127_6769122_0 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 1.042e-235 741.0
YYD1_k127_6769122_1 NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 1.455e-206 657.0
YYD1_k127_6769122_2 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000003384 250.0
YYD1_k127_6769122_3 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000008692 182.0
YYD1_k127_6835964_0 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 529.0
YYD1_k127_6835964_1 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008654 523.0
YYD1_k127_6835964_2 Periplasmic binding protein domain K01999,K11959 - - 0.000000000000002608 75.0
YYD1_k127_6835964_3 Urea ABC transporter ATP-binding protein urtd K11962 - - 0.00000000721 66.0
YYD1_k127_685313_0 Carbamoyltransferase C-terminus K00612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 297.0
YYD1_k127_685313_1 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002654 293.0
YYD1_k127_685313_2 Acyltransferase family - - - 0.0000000000000000000000000000000000000000019 177.0
YYD1_k127_685313_3 Right handed beta helix region - - - 0.00002074 52.0
YYD1_k127_6856851_0 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008713 283.0
YYD1_k127_6856851_1 signal peptide protein - - - 0.000000000000000000000000000000000000000003018 161.0
YYD1_k127_6856851_2 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.00000000000000000000000000000009524 124.0
YYD1_k127_6856851_3 - - - - 0.000000000000000007429 87.0
YYD1_k127_6856851_4 - - - - 0.00000004357 61.0
YYD1_k127_6873935_0 Phytanoyl-CoA dioxygenase (PhyH) K10674 - 1.14.11.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 453.0
YYD1_k127_6873935_1 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007581 415.0
YYD1_k127_6873935_2 SAF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002722 255.0
YYD1_k127_6873935_3 Histidine phosphatase superfamily (branch 1) - - - 0.00000000000000000000000000115 115.0
YYD1_k127_6890661_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 3.695e-258 800.0
YYD1_k127_6890661_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 9.062e-197 629.0
YYD1_k127_6890661_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002431 258.0
YYD1_k127_6890661_3 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000002244 226.0
YYD1_k127_6890661_4 Protein of unknown function (DUF2946) - - - 0.0000000000000000000000000000000000000002034 155.0
YYD1_k127_6890661_5 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000004563 102.0
YYD1_k127_6904801_0 Peptidase dimerisation domain K01438,K01439 - 3.5.1.16,3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007014 362.0
YYD1_k127_6904801_1 Protein of unknown function (DUF3182) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 318.0
YYD1_k127_6904801_2 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000000008632 132.0
YYD1_k127_6904801_3 - - - - 0.000000000000009663 84.0
YYD1_k127_6904801_4 - - - - 0.00001137 57.0
YYD1_k127_697220_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 503.0
YYD1_k127_697220_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 443.0
YYD1_k127_697220_10 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000001893 184.0
YYD1_k127_697220_11 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000000005656 173.0
YYD1_k127_697220_12 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000002898 161.0
YYD1_k127_697220_13 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000001318 147.0
YYD1_k127_697220_14 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000001314 141.0
YYD1_k127_697220_15 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000258 138.0
YYD1_k127_697220_16 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000008032 120.0
YYD1_k127_697220_17 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000001338 83.0
YYD1_k127_697220_18 Ribosomal protein L30 K02907 - - 0.0000000000000349 82.0
YYD1_k127_697220_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 335.0
YYD1_k127_697220_3 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001559 279.0
YYD1_k127_697220_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001051 286.0
YYD1_k127_697220_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002357 251.0
YYD1_k127_697220_6 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000311 234.0
YYD1_k127_697220_7 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000000001029 221.0
YYD1_k127_697220_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000000000001611 213.0
YYD1_k127_697220_9 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000000000004358 182.0
YYD1_k127_702671_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005415 421.0
YYD1_k127_702671_1 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 308.0
YYD1_k127_702671_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000001144 239.0
YYD1_k127_702671_3 Globin - - - 0.000000000000000000000000000000000000000001185 164.0
YYD1_k127_702671_4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000001377 157.0
YYD1_k127_702683_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 563.0
YYD1_k127_702683_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000003123 172.0
YYD1_k127_702683_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000003516 158.0
YYD1_k127_702683_3 Aldolase/RraA - - - 0.00000000000000000000000000000000000002306 151.0
YYD1_k127_702683_4 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000002721 140.0
YYD1_k127_703610_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 614.0
YYD1_k127_703610_1 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002737 592.0
YYD1_k127_703610_2 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 432.0
YYD1_k127_703610_3 Aminotransferase class-V K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 323.0
YYD1_k127_705161_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1116.0
YYD1_k127_705161_1 COG0457 FOG TPR repeat - - - 2.888e-215 681.0
YYD1_k127_705161_10 EamA-like transporter family - - - 0.0000000000000000000000000006789 122.0
YYD1_k127_705161_11 Double zinc ribbon - - - 0.0000000000002384 78.0
YYD1_k127_705161_2 Glutaminase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 593.0
YYD1_k127_705161_3 Glutathione S-transferase K03599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 328.0
YYD1_k127_705161_4 Cytochrome C1 family K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000001403 240.0
YYD1_k127_705161_5 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000001635 241.0
YYD1_k127_705161_6 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000002225 158.0
YYD1_k127_705161_7 Stringent starvation protein B K03600 - - 0.00000000000000000000000000000000000000005876 157.0
YYD1_k127_705161_8 light absorption K06893 - - 0.000000000000000000000000000000002512 135.0
YYD1_k127_705161_9 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000000006487 119.0
YYD1_k127_711969_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 8.092e-282 879.0
YYD1_k127_711969_1 - - - - 0.00000000000000000000000000000000000000000001198 170.0
YYD1_k127_711969_2 PFAM ATPase family associated with various cellular activities (AAA) K01338 - 3.4.21.53 0.00000000000000000000000000000000000002353 146.0
YYD1_k127_711969_3 - - - - 0.000000000000000000000000000000000004124 154.0
YYD1_k127_715006_0 AMP-binding enzyme C-terminal domain K00666,K01897 - 6.2.1.3 1.99e-208 662.0
YYD1_k127_715006_1 Phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 505.0
YYD1_k127_715006_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 433.0
YYD1_k127_715006_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 385.0
YYD1_k127_715006_4 phosphate transport regulator K07220 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003979 280.0
YYD1_k127_715006_5 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000001532 267.0
YYD1_k127_715006_6 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004687 251.0
YYD1_k127_715006_7 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000000000001072 124.0
YYD1_k127_738295_0 Acyl-CoA dehydrogenase N terminal K20035 - - 1.189e-227 718.0
YYD1_k127_738295_1 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 451.0
YYD1_k127_738295_2 MscS Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009538 436.0
YYD1_k127_738295_3 Protein of unknown function (DUF962) - - - 0.00000000000000000000000000000000000000006075 153.0
YYD1_k127_738295_4 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000005583 122.0
YYD1_k127_738295_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000005389 94.0
YYD1_k127_739_0 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0 1353.0
YYD1_k127_739_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 2.773e-227 709.0
YYD1_k127_739_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 534.0
YYD1_k127_739_3 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000316 359.0
YYD1_k127_739_4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 0.0000000000000000000000000000000000000000000000000003336 187.0
YYD1_k127_739_5 Flavinator of succinate dehydrogenase K09159 - - 0.0000000001276 64.0
YYD1_k127_739_6 PspC domain K03973 - - 0.000000859 55.0
YYD1_k127_74022_0 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 463.0
YYD1_k127_74022_1 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 456.0
YYD1_k127_74022_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 338.0
YYD1_k127_74022_3 Domain of unknown function (DUF1850) - - - 0.0006689 46.0
YYD1_k127_7484_0 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 422.0
YYD1_k127_7484_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 373.0
YYD1_k127_7484_10 Peptidase family M48 K03799 - - 0.0000000000002171 76.0
YYD1_k127_7484_2 PFAM ABC transporter related K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 359.0
YYD1_k127_7484_3 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 340.0
YYD1_k127_7484_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 348.0
YYD1_k127_7484_5 ATP ADP translocase K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 328.0
YYD1_k127_7484_6 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006267 268.0
YYD1_k127_7484_7 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005847 256.0
YYD1_k127_7484_8 Luciferase-like monooxygenase K15854 - 1.14.14.3 0.00000000000000000000000000000000000000000000000000000000000001937 233.0
YYD1_k127_7484_9 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000003503 159.0
YYD1_k127_779078_0 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 442.0
YYD1_k127_779078_1 Serine aminopeptidase, S33 K01253,K08253 - 2.7.10.2,3.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 415.0
YYD1_k127_779078_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001139 247.0
YYD1_k127_79717_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007547 405.0
YYD1_k127_79717_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000172 277.0
YYD1_k127_79717_2 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007283 273.0
YYD1_k127_79717_3 Adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000002722 238.0
YYD1_k127_79717_4 oxidation-reduction process - - - 0.0000000000000000000000000000000000000000000199 164.0
YYD1_k127_79717_5 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000001193 125.0
YYD1_k127_79717_6 CHASE - - - 0.0000000000000001547 89.0
YYD1_k127_809432_0 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 2.09e-247 773.0
YYD1_k127_809432_1 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 518.0
YYD1_k127_809432_2 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003428 522.0
YYD1_k127_809432_3 Thioesterase superfamily K07107 - - 0.00000000000000000000000000000000000007309 145.0
YYD1_k127_809432_4 Histidine kinase A domain protein - - - 0.000000000000000000000000004075 116.0
YYD1_k127_809432_5 Histidine kinase A domain protein - - - 0.00000000000001214 85.0
YYD1_k127_813001_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 4.915e-248 782.0
YYD1_k127_813001_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009926 442.0
YYD1_k127_813001_2 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000004143 222.0
YYD1_k127_813001_3 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.0000000000000000001623 98.0
YYD1_k127_868041_0 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 493.0
YYD1_k127_868041_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000378 293.0
YYD1_k127_868041_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000007473 67.0
YYD1_k127_868467_0 elongation factor G K02355 - - 2.942e-290 904.0
YYD1_k127_868467_1 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 370.0
YYD1_k127_868467_2 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002796 276.0
YYD1_k127_868467_3 Domain of unknown function (DUF4340) - - - 0.0000000000000000000006244 109.0
YYD1_k127_868467_4 Protein of unknown function (DUF2721) - - - 0.00000000000000000001256 96.0
YYD1_k127_868706_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.419e-289 912.0
YYD1_k127_868706_1 Bacterial extracellular solute-binding protein K02027,K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003128 584.0
YYD1_k127_868706_2 ABC-type sugar transport system, permease component K05815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 420.0
YYD1_k127_868706_3 ABC-type sugar transport systems permease components K02025,K05814,K10118,K17242,K17245 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008219 409.0
YYD1_k127_868706_4 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007477 265.0
YYD1_k127_868706_5 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000004033 231.0
YYD1_k127_868706_6 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000001696 154.0
YYD1_k127_877713_0 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 564.0
YYD1_k127_877713_1 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009162 443.0
YYD1_k127_877713_2 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000157 241.0
YYD1_k127_877713_4 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.00000000000000000000000007797 108.0
YYD1_k127_879571_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 2.089e-218 686.0
YYD1_k127_879571_1 type II secretion system protein K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 505.0
YYD1_k127_879571_2 - - - - 0.00000000000000000000000000000000001858 141.0
YYD1_k127_882509_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 8.865e-297 922.0
YYD1_k127_882509_1 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000001599 160.0
YYD1_k127_891477_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 1.766e-286 905.0
YYD1_k127_891477_1 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 4.517e-196 623.0
YYD1_k127_891477_2 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.0000000000000000000000000000000000000004065 158.0
YYD1_k127_892411_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 3687.0
YYD1_k127_892411_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 457.0
YYD1_k127_892411_11 RNA recognition motif - - - 0.0000000003988 69.0
YYD1_k127_892411_12 Two component sensor histidine kinase - - - 0.00000335 59.0
YYD1_k127_892411_13 helix_turn_helix, Lux Regulon - - - 0.0001744 49.0
YYD1_k127_892411_14 helix_turn_helix, Lux Regulon - - - 0.0005941 48.0
YYD1_k127_892411_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007104 451.0
YYD1_k127_892411_3 Esterase PHB depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001176 244.0
YYD1_k127_892411_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000002736 202.0
YYD1_k127_892411_5 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000679 198.0
YYD1_k127_892411_6 positive regulation of growth K07746 - - 0.000000000000000000000000000000000000000000000004543 175.0
YYD1_k127_892411_7 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000008645 113.0
YYD1_k127_892411_8 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000003301 98.0
YYD1_k127_892411_9 Predicted membrane protein (DUF2231) - - - 0.000000000000000002917 86.0
YYD1_k127_892663_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.171e-241 754.0
YYD1_k127_892663_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 6.049e-220 686.0
YYD1_k127_892663_10 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.00000000000000000000000000003238 119.0
YYD1_k127_892663_11 PFAM Colicin V production protein K03558 - - 0.0000000000000000000000001513 117.0
YYD1_k127_892663_12 - - - - 0.00000000000000006566 88.0
YYD1_k127_892663_13 PFAM Sporulation domain protein K03749 - - 0.0000000000000001366 85.0
YYD1_k127_892663_2 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 568.0
YYD1_k127_892663_3 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008253 527.0
YYD1_k127_892663_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077 454.0
YYD1_k127_892663_5 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 443.0
YYD1_k127_892663_6 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 368.0
YYD1_k127_892663_7 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000483 288.0
YYD1_k127_892663_8 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000000000000000000002919 239.0
YYD1_k127_892663_9 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000001586 184.0
YYD1_k127_896506_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 516.0
YYD1_k127_896506_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003515 378.0
YYD1_k127_896506_2 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000000000000000000005925 178.0
YYD1_k127_896506_3 Amidohydrolase family - - - 0.0000000002502 65.0
YYD1_k127_89651_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001457 261.0
YYD1_k127_89651_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000007125 58.0
YYD1_k127_901878_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 448.0
YYD1_k127_901878_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 439.0
YYD1_k127_901878_2 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 377.0
YYD1_k127_901878_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003747 282.0
YYD1_k127_901878_4 Phosphoglycolate phosphatase K22292 - 3.1.3.105 0.000000000000000000000000000000000000000000000000000000000000000000001854 241.0
YYD1_k127_901878_5 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000005685 154.0
YYD1_k127_901878_6 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008289,GO:0008689,GO:0008757,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042180,GO:0042181,GO:0042538,GO:0043167,GO:0043168,GO:0043431,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0061542,GO:0071704,GO:1901576,GO:1901611,GO:1901661,GO:1901663 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000001679 133.0
YYD1_k127_901878_7 COGs COG4925 conserved - - - 0.000000000000111 74.0
YYD1_k127_904927_0 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007366 421.0
YYD1_k127_904927_1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 378.0
YYD1_k127_904927_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 331.0
YYD1_k127_904927_3 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006165 297.0
YYD1_k127_904927_4 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005184 257.0
YYD1_k127_904927_5 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000001278 211.0
YYD1_k127_904927_6 TIGRFAM type I secretion outer membrane protein, TolC family K12340 - - 0.0000000000000000007781 86.0
YYD1_k127_912488_0 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 2.014e-269 840.0
YYD1_k127_912488_1 Belongs to the LDH2 MDH2 oxidoreductase family K13609,K16844 - 1.1.1.338,1.5.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 363.0
YYD1_k127_912488_2 dienelactone hydrolase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000002698 261.0
YYD1_k127_912488_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000003162 225.0
YYD1_k127_912488_4 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000007966 209.0
YYD1_k127_912488_5 Domain of unknown function (DUF3394) - - - 0.00000000006714 64.0
YYD1_k127_928060_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1115.0
YYD1_k127_928060_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.916e-235 734.0
YYD1_k127_928060_10 Belongs to the UPF0125 (RnfH) family K09801 - - 0.000000000003619 73.0
YYD1_k127_928060_11 Domain of unknown function (DUF4124) - - - 0.00000003129 66.0
YYD1_k127_928060_2 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008473 351.0
YYD1_k127_928060_3 Methyl-transferase K18912 - 1.14.99.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 357.0
YYD1_k127_928060_4 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 352.0
YYD1_k127_928060_5 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 288.0
YYD1_k127_928060_6 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000000000000000001303 227.0
YYD1_k127_928060_7 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000003136 193.0
YYD1_k127_928060_8 Oligoketide cyclase lipid transport protein - - - 0.0000000000000000000000000000000000000004195 153.0
YYD1_k127_928060_9 Alpha/beta hydrolase family K07020 - - 0.000000000000000000000000005344 113.0
YYD1_k127_928816_0 D-galactarate dehydratase Altronate hydrolase, C terminus K01685,K01708,K16846 - 4.2.1.42,4.2.1.7,4.4.1.24 7.256e-210 656.0
YYD1_k127_928816_1 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 535.0
YYD1_k127_928816_2 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 421.0
YYD1_k127_928816_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000774 327.0
YYD1_k127_928816_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000001783 201.0
YYD1_k127_928816_5 SAF K16845 - 4.4.1.24 0.0000000000000000000000000000000000000001093 151.0
YYD1_k127_930714_0 ABC transporter K06020 - 3.6.3.25 1.042e-261 813.0
YYD1_k127_930714_1 PFAM glycoside hydrolase 15-related - - - 1.483e-234 739.0
YYD1_k127_930714_2 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 494.0
YYD1_k127_930714_3 Domain present in PSD-95, Dlg, and ZO-1/2. K08070 - 1.3.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006506 456.0
YYD1_k127_941717_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 4.661e-210 659.0
YYD1_k127_941717_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 4.525e-209 658.0
YYD1_k127_941717_10 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 0.00000000000000000000000000000004072 125.0
YYD1_k127_941717_11 Belongs to the ompA family K03286 - - 0.00000000000000000000000001742 121.0
YYD1_k127_941717_2 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 295.0
YYD1_k127_941717_3 TIGRFAM Serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 293.0
YYD1_k127_941717_4 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000001836 256.0
YYD1_k127_941717_5 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000004103 235.0
YYD1_k127_941717_6 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly K13643 - - 0.00000000000000000000000000000000000000000000000000000000000000002697 226.0
YYD1_k127_941717_7 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000008069 206.0
YYD1_k127_941717_8 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.000000000000000000000000000000000000000000000000002717 188.0
YYD1_k127_941717_9 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000002008 181.0
YYD1_k127_947589_0 Belongs to the ABC transporter superfamily K02031,K02032 - - 1.782e-212 684.0
YYD1_k127_947589_1 PFAM extracellular solute-binding protein, family 5 K02035 - - 1.661e-201 640.0
YYD1_k127_947589_10 Domain of unknown function (DUF4124) - - - 0.00000000000000000001106 95.0
YYD1_k127_947589_11 domain protein - - - 0.0000008603 53.0
YYD1_k127_947589_2 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008321 520.0
YYD1_k127_947589_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 431.0
YYD1_k127_947589_4 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 315.0
YYD1_k127_947589_5 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000002307 213.0
YYD1_k127_947589_6 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000314 167.0
YYD1_k127_947589_7 PFAM Sporulation domain protein - - - 0.0000000000000000000000000000009195 132.0
YYD1_k127_947589_9 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000004116 97.0
YYD1_k127_948940_0 Cytochrome b(N-terminal)/b6/petB - - - 9.672e-227 718.0
YYD1_k127_948940_1 Cytochrome C and Quinol oxidase polypeptide I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 523.0
YYD1_k127_948940_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 370.0
YYD1_k127_948940_3 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000002156 230.0
YYD1_k127_948940_4 PFAM electron transport protein SCO1 SenC K07152 - - 0.000000000000000000000000000000000000000000000000000000000000001307 230.0
YYD1_k127_948940_5 - - - - 0.000000000000000000000000001277 129.0
YYD1_k127_949790_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.023e-259 807.0
YYD1_k127_949790_1 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000854 592.0
YYD1_k127_949790_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002323 424.0
YYD1_k127_949790_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000927 343.0
YYD1_k127_949790_4 Two component transcriptional regulator, winged helix family K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000011 284.0
YYD1_k127_949790_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000000000000000000000000000000000000000005247 184.0
YYD1_k127_949790_6 Sortase family K07284 - 3.4.22.70 0.0000000000000000000000000000000000000000000005887 174.0
YYD1_k127_9567_0 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 504.0
YYD1_k127_9567_1 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 409.0
YYD1_k127_9567_10 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.000000000000000000000000000000000000000000000000000000000000000000000001482 260.0
YYD1_k127_9567_11 - - - - 0.00000000000000000000000000000000000000000000000000000000000007962 226.0
YYD1_k127_9567_12 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000002318 169.0
YYD1_k127_9567_13 PFAM small multidrug resistance protein K11741 - - 0.000000000000000000000000000000000003345 139.0
YYD1_k127_9567_2 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 409.0
YYD1_k127_9567_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000683 400.0
YYD1_k127_9567_4 ABC transporter K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 400.0
YYD1_k127_9567_5 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 358.0
YYD1_k127_9567_6 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006658 339.0
YYD1_k127_9567_7 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 308.0
YYD1_k127_9567_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K03793 - 1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003325 276.0
YYD1_k127_9567_9 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000009509 259.0
YYD1_k127_970540_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1290.0
YYD1_k127_970540_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.156e-255 803.0
YYD1_k127_970540_2 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003613 297.0
YYD1_k127_970540_3 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000003226 191.0
YYD1_k127_970540_4 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000001092 94.0
YYD1_k127_970540_5 Metallo-beta-lactamase superfamily - - - 0.0000001717 58.0
YYD1_k127_970540_6 eight transmembrane protein EpsH - - - 0.0007236 47.0
YYD1_k127_981410_0 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003928 549.0
YYD1_k127_981410_1 TonB-dependent receptor plug K02014 - - 0.00000000000000000000000000000000000000000000000000000000003566 213.0
YYD1_k127_981410_2 cytochrome - - - 0.00000000000000000000000000000000000000002941 165.0
YYD1_k127_981410_3 Protein required for attachment to host cells - - - 0.00000748 52.0
YYD1_k127_990039_0 2-oxoacid ferredoxin oxidoreductase, alpha subunit K00169,K19070 GO:0003674,GO:0003824,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 509.0
YYD1_k127_990039_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 444.0
YYD1_k127_990039_2 aerobic-type carbon monoxide dehydrogenase, small subunit CoxS K03518,K04107 - 1.2.5.3,1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000007582 230.0
YYD1_k127_990039_3 PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.000000000000000000000000000000000000000000000000005571 189.0
YYD1_k127_990039_4 oxidoreductase gamma subunit K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000001843 177.0
YYD1_k127_990039_5 - - - - 0.0000000000000000000000000003298 119.0
YYD1_k127_990039_6 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K04108 - 1.3.7.9 0.00000001864 63.0
YYD1_k127_99417_0 DNA polymerase K02337 - 2.7.7.7 1.945e-257 837.0
YYD1_k127_99417_1 Helix-turn-helix domain protein - - - 0.0000000000000000000000000000000000001039 154.0
YYD1_k127_99417_2 FAD binding domain K09828 - 1.3.1.72 0.0000000000006926 79.0