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Overview

ID MAG04627
Name YYD1_bin.6
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Gemmatimonadales
Family GWC2-71-9
Genus JAICEH01
Species JAICEH01 sp035457305
Assembly information
Completeness (%) 63.3
Contamination (%) 0.26
GC content (%) 73.0
N50 (bp) 7,280
Genome size (bp) 1,655,147

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1546

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1026988_0 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000006248 261.0
YYD1_k127_1026988_1 Phosphoribosyl transferase domain K07101 - - 0.00000000000000000000000000000000000000006801 168.0
YYD1_k127_1026988_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000004747 162.0
YYD1_k127_1026988_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000004519 106.0
YYD1_k127_1026988_4 4-vinyl reductase, 4VR - - - 0.000000000000005991 83.0
YYD1_k127_1052729_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006987 479.0
YYD1_k127_1052729_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 291.0
YYD1_k127_1052729_10 - - - - 0.0000000297 62.0
YYD1_k127_1052729_2 Multicopper oxidase K00368 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000002648 257.0
YYD1_k127_1052729_3 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000001495 180.0
YYD1_k127_1052729_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000001586 177.0
YYD1_k127_1052729_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000107 164.0
YYD1_k127_1052729_6 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000001324 155.0
YYD1_k127_1052729_7 Thioredoxin-like domain K03671 - - 0.00000000000000000000000000000000000000171 149.0
YYD1_k127_1052729_8 - - - - 0.00000000000000005205 95.0
YYD1_k127_1052729_9 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000002073 80.0
YYD1_k127_1061092_0 Bacterial transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 597.0
YYD1_k127_1067735_0 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 372.0
YYD1_k127_1067735_1 SpoU rRNA Methylase family K02533,K15396 - 2.1.1.200 0.000000000000000000000000000000000000000000000005143 181.0
YYD1_k127_1067735_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000003091 141.0
YYD1_k127_1067735_3 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000008901 111.0
YYD1_k127_1126075_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.572e-264 826.0
YYD1_k127_1126075_1 Cys/Met metabolism PLP-dependent enzyme K01758 - 4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 517.0
YYD1_k127_1126075_2 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009398 490.0
YYD1_k127_1126075_3 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 396.0
YYD1_k127_1126075_4 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 325.0
YYD1_k127_1126075_5 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004981 317.0
YYD1_k127_1126075_6 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000002208 257.0
YYD1_k127_1126075_7 GIY-YIG type nucleases (URI domain) K03703 - - 0.000000000000000000000000000000000000000003505 166.0
YYD1_k127_1127362_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 364.0
YYD1_k127_1127362_1 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 364.0
YYD1_k127_1127362_10 Type II transport protein GspH K08084 - - 0.0000002297 59.0
YYD1_k127_1127362_11 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.0006269 47.0
YYD1_k127_1127362_2 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 290.0
YYD1_k127_1127362_3 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000167 288.0
YYD1_k127_1127362_4 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000001036 194.0
YYD1_k127_1127362_5 metalloendopeptidase activity K03799 - - 0.0000000000000000000000000000000000000000000000001159 190.0
YYD1_k127_1127362_6 MerR HTH family regulatory protein - - - 0.0000000000000000000000000000000002276 142.0
YYD1_k127_1127362_7 - - - - 0.000000000000000000003757 104.0
YYD1_k127_1127362_8 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000008356 101.0
YYD1_k127_1127362_9 HEAT repeat - - - 0.00000000000000009377 96.0
YYD1_k127_1146135_0 FAD linked oxidases, C-terminal domain K18930 - - 3.942e-300 954.0
YYD1_k127_1146135_1 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 524.0
YYD1_k127_1146135_10 ATP-independent chaperone mediated protein folding - - - 0.00000000000000000000000386 117.0
YYD1_k127_1146135_11 HxlR-like helix-turn-helix - - - 0.00000000000000000002854 94.0
YYD1_k127_1146135_12 Protein of unknown function (DUF1579) - - - 0.000000000000000005973 93.0
YYD1_k127_1146135_13 - - - - 0.000000000001379 77.0
YYD1_k127_1146135_2 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 516.0
YYD1_k127_1146135_3 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006869 376.0
YYD1_k127_1146135_4 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 358.0
YYD1_k127_1146135_5 PFAM Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001237 287.0
YYD1_k127_1146135_6 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000006805 217.0
YYD1_k127_1146135_7 Phosphodiester glycosidase - - - 0.0000000000000000000000000000000000000000000000002957 188.0
YYD1_k127_1146135_8 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0000000000000000000000000000000001141 149.0
YYD1_k127_1146135_9 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000003008 146.0
YYD1_k127_1202446_0 Peptidase family M48 K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006373 325.0
YYD1_k127_1202446_1 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008422 328.0
YYD1_k127_1202446_2 Integral membrane protein TerC family K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 310.0
YYD1_k127_1202446_3 Enoyl-(Acyl carrier protein) reductase K07124 - - 0.0000000000000000000000000000000000000000000004192 177.0
YYD1_k127_1202446_4 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000005557 126.0
YYD1_k127_1202446_5 molybdopterin-guanine dinucleotide biosynthesis protein K03753,K13818 - 2.7.7.77 0.000000000000000004018 96.0
YYD1_k127_1202446_6 Major facilitator K06902 - - 0.0000000000000002182 83.0
YYD1_k127_1240719_0 cellulase activity - - - 1.57e-211 682.0
YYD1_k127_1240719_1 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000127 179.0
YYD1_k127_1241159_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009508 563.0
YYD1_k127_1241159_1 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004707 384.0
YYD1_k127_1241159_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000002303 278.0
YYD1_k127_1241159_3 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000004715 218.0
YYD1_k127_1241159_4 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000005763 150.0
YYD1_k127_1242969_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005207 337.0
YYD1_k127_1242969_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 306.0
YYD1_k127_1242969_2 VanZ like family - - - 0.000003484 53.0
YYD1_k127_1242969_3 WD40 repeat-like protein - - - 0.00001064 58.0
YYD1_k127_1247465_0 PHP domain protein K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 366.0
YYD1_k127_1247465_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000004153 266.0
YYD1_k127_1247465_2 Dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000671 163.0
YYD1_k127_1258557_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 584.0
YYD1_k127_1258557_1 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 358.0
YYD1_k127_1258557_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 300.0
YYD1_k127_1258557_3 PFAM cytochrome c biogenesis protein, transmembrane region K06196 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002518 273.0
YYD1_k127_1258557_4 Protein kinase domain K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000286 263.0
YYD1_k127_1258557_5 Glycosyl hydrolase family 3 N terminal domain K05349 - 3.2.1.21 0.00000000000000000000000000000000000002043 157.0
YYD1_k127_1258557_6 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000286 141.0
YYD1_k127_1258557_7 peptidyl-tyrosine sulfation - - - 0.0000000000000000007547 102.0
YYD1_k127_1258557_8 peptidyl-tyrosine sulfation - - - 0.0000000000000004029 93.0
YYD1_k127_1258557_9 Glutaredoxin-like domain (DUF836) - - - 0.000002167 58.0
YYD1_k127_1272367_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 404.0
YYD1_k127_1272367_1 Major facilitator Superfamily K08223 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001763 259.0
YYD1_k127_1272367_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000001272 110.0
YYD1_k127_1272367_11 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000001988 78.0
YYD1_k127_1272367_12 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000001378 73.0
YYD1_k127_1272367_2 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000479 240.0
YYD1_k127_1272367_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000000006803 191.0
YYD1_k127_1272367_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000005427 186.0
YYD1_k127_1272367_5 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000005785 172.0
YYD1_k127_1272367_6 transcriptional regulator, ArsR family - - - 0.00000000000000000000000000000000000278 160.0
YYD1_k127_1272367_7 4 iron, 4 sulfur cluster binding K02573 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000005506 142.0
YYD1_k127_1272367_8 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000005382 141.0
YYD1_k127_1272367_9 Protein of unknown function, DUF481 - - - 0.00000000000000000000000001337 122.0
YYD1_k127_1277814_0 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 478.0
YYD1_k127_1277814_1 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000002101 179.0
YYD1_k127_1277814_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000001979 105.0
YYD1_k127_1330952_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 368.0
YYD1_k127_1330952_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 297.0
YYD1_k127_1330952_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000005717 202.0
YYD1_k127_1330952_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000001327 161.0
YYD1_k127_1330952_4 ATPase P-type (Transporting), HAD superfamily, subfamily IC K01535,K01537 - 3.6.3.6,3.6.3.8 0.0000000000000000000000000001301 126.0
YYD1_k127_1330952_5 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000005774 109.0
YYD1_k127_1330952_6 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.0000000000000000000003249 104.0
YYD1_k127_1347065_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.955e-211 683.0
YYD1_k127_1347065_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 481.0
YYD1_k127_1347065_2 AMIN domain K02666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006675 444.0
YYD1_k127_1347065_3 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 440.0
YYD1_k127_1347065_4 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008719 294.0
YYD1_k127_1347065_5 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000834 138.0
YYD1_k127_1347065_6 - - - - 0.000000000000000126 92.0
YYD1_k127_1347065_7 Pilus assembly protein PilO K02664 - - 0.0002211 51.0
YYD1_k127_1348083_0 Malate synthase K01638 - 2.3.3.9 6.801e-219 692.0
YYD1_k127_1348083_1 Isocitrate lyase family K01637 GO:0001101,GO:0001666,GO:0003674,GO:0003824,GO:0004451,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0006102,GO:0006950,GO:0008150,GO:0008152,GO:0009268,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0010033,GO:0010034,GO:0010447,GO:0016020,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0019899,GO:0032787,GO:0033554,GO:0033993,GO:0035375,GO:0036293,GO:0036294,GO:0042221,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046421,GO:0046487,GO:0046677,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0070482,GO:0070542,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071944,GO:0072350,GO:0075136,GO:0075141,GO:1901700 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 597.0
YYD1_k127_1348083_2 MOFRL family K11529 - 2.7.1.165 0.00000000000000000000000000000002582 129.0
YYD1_k127_1359266_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003157 268.0
YYD1_k127_1359266_1 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002805 246.0
YYD1_k127_1359266_2 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.00000000000000000000000000000000000000000000000000000000004886 216.0
YYD1_k127_1359266_3 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.000000000000000000000000000000000000000000000000000001096 213.0
YYD1_k127_1359266_4 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.000000000000000000000000000000002292 137.0
YYD1_k127_1408036_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 495.0
YYD1_k127_1408036_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008817 445.0
YYD1_k127_1408036_2 Fe-S protein K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000001996 231.0
YYD1_k127_1408036_3 transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000002798 207.0
YYD1_k127_1408036_4 Beta-eliminating lyase K01620 - 4.1.2.48 0.00000000000000000000000001876 121.0
YYD1_k127_1408036_5 - - - - 0.000000000000000000000000105 109.0
YYD1_k127_1408036_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000005667 91.0
YYD1_k127_1452218_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.0 1034.0
YYD1_k127_1452218_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 608.0
YYD1_k127_1452218_2 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 501.0
YYD1_k127_1452218_3 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 395.0
YYD1_k127_1452218_4 Beta-lactamase class C and other penicillin binding - - - 0.00000000000000000000000000000000000000000000000000000000000000001266 234.0
YYD1_k127_1452218_5 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000006625 223.0
YYD1_k127_1452218_6 Mazg nucleotide pyrophosphohydrolase K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000001208 187.0
YYD1_k127_1452218_7 - - - - 0.000000000447 70.0
YYD1_k127_1452547_0 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 295.0
YYD1_k127_1452547_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003753 275.0
YYD1_k127_1452547_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000006306 248.0
YYD1_k127_1452547_3 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000006756 106.0
YYD1_k127_1452547_4 Septum formation initiator K05589 - - 0.0000000001304 71.0
YYD1_k127_1526906_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 467.0
YYD1_k127_1526906_1 - - - - 0.00000000000000000000000000000000000000000000008272 178.0
YYD1_k127_1526906_2 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) - - - 0.0000000000000000000000000000000000000003956 155.0
YYD1_k127_1526906_3 SCP-2 sterol transfer family - - - 0.000000000000000000003866 108.0
YYD1_k127_1526906_4 Anti-sigma-K factor rskA - - - 0.00001046 56.0
YYD1_k127_1526906_5 Putative adhesin - - - 0.00007011 54.0
YYD1_k127_1529693_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 477.0
YYD1_k127_1529693_1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005639 478.0
YYD1_k127_1529693_2 Telomere recombination K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000009329 198.0
YYD1_k127_1529693_3 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000005251 152.0
YYD1_k127_1529693_4 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000006635 149.0
YYD1_k127_1529693_5 Low molecular weight phosphatase family K01104 - 3.1.3.48 0.000000000000000000000000000000000005025 151.0
YYD1_k127_1529693_6 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000009855 91.0
YYD1_k127_1570825_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 612.0
YYD1_k127_1570825_1 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 381.0
YYD1_k127_1570825_2 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000008549 264.0
YYD1_k127_1597608_0 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 6.128e-209 662.0
YYD1_k127_1597608_1 isocitrate dehydrogenase activity K00031 GO:0003674,GO:0003824,GO:0003862,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022900,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000965 534.0
YYD1_k127_1597608_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003428 272.0
YYD1_k127_1597608_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000005805 84.0
YYD1_k127_1661752_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003945 582.0
YYD1_k127_1661752_1 secondary active sulfate transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002957 544.0
YYD1_k127_1661752_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000005515 201.0
YYD1_k127_1661752_3 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000003278 104.0
YYD1_k127_1679145_0 Prolyl oligopeptidase family - - - 9.104e-272 859.0
YYD1_k127_1679145_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006011 396.0
YYD1_k127_1679145_2 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000001685 207.0
YYD1_k127_1679145_3 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000004851 164.0
YYD1_k127_1679145_6 - - - - 0.00000001363 59.0
YYD1_k127_1709086_0 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 423.0
YYD1_k127_1709086_1 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 402.0
YYD1_k127_1712566_0 AIR synthase related protein, N-terminal domain K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 291.0
YYD1_k127_1712566_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000001873 190.0
YYD1_k127_1712566_2 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.00000000000000000000000000000000000000000007078 175.0
YYD1_k127_1712566_3 Belongs to the NiCoT transporter (TC 2.A.52) family K07241 - - 0.0000000000000000000000006979 115.0
YYD1_k127_1712566_4 SnoaL-like domain - - - 0.00000000000001078 88.0
YYD1_k127_1712566_5 Belongs to the glycosyl hydrolase 13 family K01176 - 3.2.1.1 0.00000005734 63.0
YYD1_k127_1712566_6 - - - - 0.00004421 55.0
YYD1_k127_1733741_0 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 391.0
YYD1_k127_1733741_1 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 383.0
YYD1_k127_1733741_2 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000001026 196.0
YYD1_k127_1733741_3 ferredoxin-NADP+ reductase activity - - - 0.00000000000000000000000000000002305 139.0
YYD1_k127_1824953_0 choline dehydrogenase activity K03333 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009405,GO:0016491,GO:0016614,GO:0016899,GO:0016995,GO:0044419,GO:0051704,GO:0055114 1.1.3.6 1.192e-233 735.0
YYD1_k127_1824953_1 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007421 293.0
YYD1_k127_1824953_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000002872 276.0
YYD1_k127_1824953_3 Pfam:Arch_ATPase K06921 - - 0.0000000000000047 87.0
YYD1_k127_1838441_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1176.0
YYD1_k127_1838441_1 AcrB/AcrD/AcrF family K03296 - - 0.0 1066.0
YYD1_k127_1838441_2 diguanylate cyclase K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 434.0
YYD1_k127_1838441_3 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 397.0
YYD1_k127_1838441_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000001207 263.0
YYD1_k127_1838441_5 PFAM Bacterial regulatory proteins, tetR family - - - 0.0000000004876 68.0
YYD1_k127_1885057_0 MatE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 536.0
YYD1_k127_1885057_1 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001878 252.0
YYD1_k127_1885057_2 repeat protein - - - 0.000000000000000000008836 93.0
YYD1_k127_1917188_0 Surface antigen K07277 - - 1.052e-206 667.0
YYD1_k127_1917188_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 509.0
YYD1_k127_1917188_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 335.0
YYD1_k127_1917188_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 319.0
YYD1_k127_1917188_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 293.0
YYD1_k127_1917188_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000008885 262.0
YYD1_k127_1917188_6 Domain of unknown function (DUF374) K09778 - - 0.000000000000000000000000000000000000000000006154 177.0
YYD1_k127_1917188_7 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000002081 148.0
YYD1_k127_1917188_8 Outer membrane protein (OmpH-like) K06142 - - 0.000000000000000001323 96.0
YYD1_k127_1926682_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0016740,GO:0016765,GO:0019899,GO:0030312,GO:0035375,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 439.0
YYD1_k127_1926682_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 440.0
YYD1_k127_1926682_10 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.000002278 57.0
YYD1_k127_1926682_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 398.0
YYD1_k127_1926682_3 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 390.0
YYD1_k127_1926682_4 PTS system sorbose subfamily IIB component K19507 - - 0.0000000000000000000000000000000000000000001461 169.0
YYD1_k127_1926682_5 PTS system mannose/fructose/sorbose family IID component K02796 - - 0.00000000000000000000000002198 124.0
YYD1_k127_1926682_6 PTS system sorbose-specific iic component K02795 - - 0.000000000000000000002062 107.0
YYD1_k127_1926682_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000001091 93.0
YYD1_k127_1926682_8 phosphocarrier protein Hpr K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000009656 95.0
YYD1_k127_1926682_9 system, fructose subfamily IIA component K02793,K02794 - 2.7.1.191 0.0000000003037 66.0
YYD1_k127_1982167_0 TonB dependent receptor K02014 - - 6.802e-203 664.0
YYD1_k127_1982167_1 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000002224 145.0
YYD1_k127_1982167_2 VWA domain containing CoxE-like protein K07114 - - 0.0000000000135 72.0
YYD1_k127_198231_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003153 292.0
YYD1_k127_198231_1 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.00000000000000000000000000000000000000004708 166.0
YYD1_k127_1985205_0 Domain of unknown function (DUF5117) - - - 1.272e-278 893.0
YYD1_k127_1985205_1 Helicase associated domain (HA2) Add an annotation K03579 - 3.6.4.13 5.635e-210 669.0
YYD1_k127_1985205_2 Chalcone isomerase-like - - - 0.00000000000000000000000000000000000000000000000025 184.0
YYD1_k127_1985205_3 PDZ domain - - - 0.000000000000000000003284 108.0
YYD1_k127_1987889_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 400.0
YYD1_k127_1987889_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 383.0
YYD1_k127_1987889_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 376.0
YYD1_k127_1987889_3 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000000000000006832 210.0
YYD1_k127_1987889_4 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000001609 166.0
YYD1_k127_1987889_5 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000001002 64.0
YYD1_k127_2024089_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008273 547.0
YYD1_k127_2024089_1 CHAT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 311.0
YYD1_k127_2024089_2 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000058 140.0
YYD1_k127_2118239_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005728 574.0
YYD1_k127_2118239_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 460.0
YYD1_k127_2118239_2 HEAT repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 342.0
YYD1_k127_2118239_3 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005264 299.0
YYD1_k127_2118239_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003473 274.0
YYD1_k127_2118239_5 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000006653 216.0
YYD1_k127_2118239_6 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000003208 216.0
YYD1_k127_2118239_7 Belongs to the TrpC family K13498 - 4.1.1.48,5.3.1.24 0.0000000000000001672 89.0
YYD1_k127_2118239_8 PucR C-terminal helix-turn-helix domain - - - 0.0005393 53.0
YYD1_k127_2180562_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 569.0
YYD1_k127_2180562_1 Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 317.0
YYD1_k127_2180562_2 Sugar nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000001328 243.0
YYD1_k127_2180562_3 ECF sigma factor - - - 0.000000000000000000000000000000000000000000004087 169.0
YYD1_k127_2180562_4 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000137 170.0
YYD1_k127_2180562_5 - - - - 0.000000000000002151 83.0
YYD1_k127_2180562_6 distant relative of homeotic protein bithoraxoid K07131 - - 0.00000376 54.0
YYD1_k127_2193948_0 DNA restriction-modification system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 432.0
YYD1_k127_2193948_1 Glycosyl transferase family 21 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000001535 270.0
YYD1_k127_2193948_2 Microcin C7 resistance K01297 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009050,GO:0009056,GO:0009254,GO:0009987,GO:0016787,GO:0019538,GO:0030203,GO:0034641,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000001142 265.0
YYD1_k127_2193948_3 SNF2 family N-terminal domain - - - 0.0000000000000000000000000000000006827 151.0
YYD1_k127_2193948_4 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.0000000000000000000000000002235 127.0
YYD1_k127_2212540_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 571.0
YYD1_k127_2212540_1 Zinc-uptake complex component A periplasmic K11707 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000000000000000000000000001198 189.0
YYD1_k127_2212540_2 cell adhesion involved in biofilm formation - - - 0.000000009349 68.0
YYD1_k127_2212540_3 SnoaL-like domain - - - 0.000001397 56.0
YYD1_k127_2212540_4 Tetratrico peptide repeat - - - 0.000002741 60.0
YYD1_k127_2212540_5 Alpha beta hydrolase fold - - - 0.0009779 51.0
YYD1_k127_2221425_0 alginic acid biosynthetic process - - - 3.13e-245 776.0
YYD1_k127_2221425_1 Anthranilate synthase component I, N terminal region K01657,K01665 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 377.0
YYD1_k127_2221425_2 with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000001551 243.0
YYD1_k127_2221425_3 Formiminotransferase-cyclodeaminase K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.00000000000000000000000000000000000000000000000000000000000000000004254 244.0
YYD1_k127_2221425_4 peptidyl-tyrosine sulfation K13992 - - 0.00000000000000000000000000000000000000000000000000000000000000001774 235.0
YYD1_k127_2221425_5 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000002278 148.0
YYD1_k127_2221425_6 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000007638 133.0
YYD1_k127_2221425_7 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.0008368 51.0
YYD1_k127_2293588_0 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009213 501.0
YYD1_k127_2293588_1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 456.0
YYD1_k127_2293588_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000003251 149.0
YYD1_k127_2293588_3 - - - - 0.00000002173 61.0
YYD1_k127_2301980_0 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 431.0
YYD1_k127_2301980_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 423.0
YYD1_k127_2301980_2 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 411.0
YYD1_k127_2301980_3 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K00857,K01920,K01935 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.21,6.3.2.3,6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 342.0
YYD1_k127_2301980_4 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 309.0
YYD1_k127_2301980_5 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 309.0
YYD1_k127_2301980_6 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000002185 225.0
YYD1_k127_2301980_7 permease - - - 0.000000000000000000000000000000000000222 162.0
YYD1_k127_2301980_8 redox protein regulator of disulfide bond formation K04063 - - 0.0000000000000008331 78.0
YYD1_k127_2301980_9 NHL repeat - - - 0.000000002037 70.0
YYD1_k127_2334784_0 Sodium/hydrogen exchanger family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006478 485.0
YYD1_k127_2334784_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005102 246.0
YYD1_k127_2334784_2 transport - - - 0.00000000002654 77.0
YYD1_k127_2334784_3 Sigma-70 region 2 K03088 - - 0.0000002754 61.0
YYD1_k127_2368638_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 459.0
YYD1_k127_2368638_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008191 438.0
YYD1_k127_2368638_10 transport - - - 0.0000000000000000000003013 111.0
YYD1_k127_2368638_11 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000007331 108.0
YYD1_k127_2368638_2 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 385.0
YYD1_k127_2368638_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 365.0
YYD1_k127_2368638_4 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 364.0
YYD1_k127_2368638_5 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000002012 216.0
YYD1_k127_2368638_6 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000000000003118 195.0
YYD1_k127_2368638_7 Methylates ribosomal protein L11 K02687 - - 0.000000000000000000000000000000000001432 158.0
YYD1_k127_2368638_8 Yqey-like protein K09117 - - 0.00000000000000000000000000000002714 134.0
YYD1_k127_2368638_9 PFAM histidine triad (HIT) protein K02503 - - 0.0000000000000000000000000000001368 139.0
YYD1_k127_2429794_0 ABC transporter transmembrane region K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 617.0
YYD1_k127_2429794_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006112 280.0
YYD1_k127_2429794_2 lysyltransferase activity K07027 - - 0.0000000000000000000002336 109.0
YYD1_k127_2429794_3 Forkhead associated domain - - - 0.000000000007474 76.0
YYD1_k127_2468607_0 Formate dehydrogenase alpha subunit K00123,K05299 - 1.17.1.10,1.17.1.9 5.648e-230 744.0
YYD1_k127_2468607_1 - - - - 0.0000000000000546 87.0
YYD1_k127_2474932_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007078 536.0
YYD1_k127_2474932_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 446.0
YYD1_k127_2474932_2 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 453.0
YYD1_k127_2474932_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009716 361.0
YYD1_k127_2474932_4 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 346.0
YYD1_k127_2474932_5 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 310.0
YYD1_k127_2474932_6 rod shape-determining protein MreD K03571 - - 0.00000000000000000000000000003991 123.0
YYD1_k127_2481296_0 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007862 407.0
YYD1_k127_2481296_1 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 350.0
YYD1_k127_2481296_2 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 292.0
YYD1_k127_2537808_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 554.0
YYD1_k127_2537808_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000006091 146.0
YYD1_k127_2537808_2 Gaf domain - - - 0.00000003319 66.0
YYD1_k127_2537808_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0001341 45.0
YYD1_k127_2548327_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 3.462e-214 688.0
YYD1_k127_2548327_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 466.0
YYD1_k127_2548327_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001118 278.0
YYD1_k127_2548327_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000008049 58.0
YYD1_k127_2572381_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 7.694e-261 820.0
YYD1_k127_2572381_1 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008709 492.0
YYD1_k127_2572381_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 438.0
YYD1_k127_2572381_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 338.0
YYD1_k127_2572381_4 Transglutaminase/protease-like homologues - - - 0.00000000000000000000006067 113.0
YYD1_k127_2572381_5 subunit of a heme lyase K02200 - - 0.00000000000000000001442 108.0
YYD1_k127_2572381_6 23S rRNA-intervening sequence protein - - - 0.0000000000000000001942 92.0
YYD1_k127_2572381_7 - - - - 0.000000000000007441 87.0
YYD1_k127_2572381_8 PFAM Appr-1-p processing domain protein - - - 0.0000004332 60.0
YYD1_k127_2572381_9 Tetratricopeptide TPR_2 repeat protein - - - 0.0001347 53.0
YYD1_k127_2581948_0 Acyl-CoA oxidase K00232 - 1.3.3.6 3.568e-199 644.0
YYD1_k127_2581948_1 Belongs to the aldehyde dehydrogenase family K00154,K22445 - 1.2.1.68,1.2.99.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 322.0
YYD1_k127_2581948_2 CDGSH-type zinc finger. Function unknown. - - - 0.0000000000000000000000000000000000000000000000000007558 203.0
YYD1_k127_2581948_3 Ribose/Galactose Isomerase - - - 0.0000000000000000000000000000000000000000000000005649 200.0
YYD1_k127_2581948_4 Protein of unknown function, DUF - - - 0.00000000000000000000000000000000000000003788 157.0
YYD1_k127_2581948_5 - - - - 0.0000000000000000000000000000000001913 137.0
YYD1_k127_2593358_0 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000112 273.0
YYD1_k127_2593358_1 Part of the ABC transporter FtsEX involved in K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000001439 238.0
YYD1_k127_2593358_2 diguanylate cyclase K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000007283 236.0
YYD1_k127_2593358_3 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000001944 149.0
YYD1_k127_2599805_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438 439.0
YYD1_k127_2599805_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006021 324.0
YYD1_k127_2599805_2 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000004059 165.0
YYD1_k127_2599805_3 Glycine cleavage T-protein C-terminal barrel domain K06980 - - 0.00000000000000000000000000003205 129.0
YYD1_k127_2599805_4 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000001186 101.0
YYD1_k127_2599805_5 FAD binding domain K11472 - - 0.0000000000001261 83.0
YYD1_k127_2616631_0 malic enzyme K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 5.852e-258 815.0
YYD1_k127_2616631_1 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 7.893e-225 709.0
YYD1_k127_2616631_2 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 391.0
YYD1_k127_2616631_3 Zinc-dependent metalloprotease - - - 0.00000005566 63.0
YYD1_k127_2620919_0 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009647 417.0
YYD1_k127_2620919_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 353.0
YYD1_k127_2620919_2 Transcriptional regulatory protein, C terminal K02483,K07665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 314.0
YYD1_k127_2620919_3 PFAM Amylo-alpha-16-glucosidase - - - 0.00000000000000000000000000000000000000000000000000000000000144 229.0
YYD1_k127_2620919_4 Putative lumazine-binding - - - 0.0006963 48.0
YYD1_k127_2663412_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.0 3344.0
YYD1_k127_2663412_1 cytochrome P450 K22492 - 1.14.15.24 0.000000000000000000000000000000000000000000000000000000000000000000003745 246.0
YYD1_k127_2663412_2 HD domain - - - 0.000000004266 64.0
YYD1_k127_2685585_0 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004906 375.0
YYD1_k127_2685585_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000003532 270.0
YYD1_k127_2685585_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000001299 160.0
YYD1_k127_2685585_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000002954 69.0
YYD1_k127_2685585_4 - - - - 0.000001898 59.0
YYD1_k127_2699892_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008354 455.0
YYD1_k127_2699892_1 PFAM glycosyl transferase group 1 K12995 - 2.4.1.348 0.0000000000000000000000000000000000000000000000000000003497 209.0
YYD1_k127_2699892_2 MgsA AAA+ ATPase C terminal K07478 - - 0.00000000000000000000000000000000000000000000000000117 185.0
YYD1_k127_2699892_3 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000005472 154.0
YYD1_k127_2699892_4 Late embryogenesis abundant protein - - - 0.000000000006426 76.0
YYD1_k127_2766424_0 DALR_2 K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 404.0
YYD1_k127_2766424_1 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 327.0
YYD1_k127_2766424_2 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000001483 243.0
YYD1_k127_2766424_3 mechanosensitive ion channel K22044 - - 0.0000000000000000000000000000000000000000000000000000000000000002758 235.0
YYD1_k127_2766424_4 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000001489 219.0
YYD1_k127_2766424_5 Universal stress protein family K07090 - - 0.00000448 58.0
YYD1_k127_2766424_6 E1-E2 ATPase - - - 0.0002679 52.0
YYD1_k127_2775849_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 379.0
YYD1_k127_2775849_1 Transcriptional - - - 0.00000000000000000000001087 105.0
YYD1_k127_2783873_0 Protein of unknown function (DUF512) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005113 468.0
YYD1_k127_2783873_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 457.0
YYD1_k127_2783873_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 353.0
YYD1_k127_2783873_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003996 331.0
YYD1_k127_2783873_4 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003728 328.0
YYD1_k127_2783873_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001883 239.0
YYD1_k127_2783873_6 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000001927 152.0
YYD1_k127_2783873_7 Acid phosphatase - GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000000000000000000000000001155 128.0
YYD1_k127_2783873_8 peptidyl-tyrosine sulfation - - - 0.00002424 55.0
YYD1_k127_2783873_9 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0009216 50.0
YYD1_k127_2788859_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006 - 2.7.9.1 0.0 1054.0
YYD1_k127_2788859_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 631.0
YYD1_k127_2788859_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 535.0
YYD1_k127_2788859_3 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 476.0
YYD1_k127_2788859_4 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001941 276.0
YYD1_k127_2788859_5 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000006492 224.0
YYD1_k127_2792432_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 516.0
YYD1_k127_2792432_1 DNA methylase K00571 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008841 357.0
YYD1_k127_2792432_10 - - - - 0.0000000000000000000000000002769 118.0
YYD1_k127_2792432_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007423 329.0
YYD1_k127_2792432_3 glyoxalase bleomycin resistance protein dioxygenase K07104 - 1.13.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000002866 254.0
YYD1_k127_2792432_4 Clp protease K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000001094 242.0
YYD1_k127_2792432_5 GTP cyclohydrolase K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000001561 169.0
YYD1_k127_2792432_6 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000002517 175.0
YYD1_k127_2792432_7 Transcriptional regulator - - - 0.000000000000000000000000000000000000000842 156.0
YYD1_k127_2792432_8 PFAM Fe-S metabolism associated K02426 - - 0.0000000000000000000000000000000002438 136.0
YYD1_k127_2792432_9 Protein of unknown function (DUF664) - - - 0.000000000000000000000000000000006287 137.0
YYD1_k127_2811495_0 ABC transporter transmembrane region K18889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 571.0
YYD1_k127_2811495_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 536.0
YYD1_k127_2811495_2 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 453.0
YYD1_k127_2811495_3 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 415.0
YYD1_k127_2811495_4 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002362 273.0
YYD1_k127_2811495_5 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000000000682 156.0
YYD1_k127_2863532_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 408.0
YYD1_k127_2863532_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 300.0
YYD1_k127_2863532_2 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 297.0
YYD1_k127_2863532_3 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000001985 250.0
YYD1_k127_2863532_4 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000001004 244.0
YYD1_k127_2863532_5 Cytochrome c K07243 - - 0.000000000000000000000000000000000000000000000000000000000000005636 235.0
YYD1_k127_2863532_6 Glutathione peroxidase - - - 0.00000000000000000000000000000000000000003597 162.0
YYD1_k127_2863532_7 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.000000000000001786 91.0
YYD1_k127_2863532_8 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788,K10810 - 2.5.1.3,5.3.99.10 0.000000000000003414 79.0
YYD1_k127_2863532_9 Bifunctional sulfur carrier protein thiazole synthase K03154 - - 0.000000000005649 73.0
YYD1_k127_2873673_0 ATP-dependent helicase nuclease subunit A K16898 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000001372 216.0
YYD1_k127_2873673_1 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000000186 158.0
YYD1_k127_2873673_2 - - - - 0.00000000000000000001677 102.0
YYD1_k127_2873673_3 - - - - 0.00000000000000000004873 102.0
YYD1_k127_2873673_4 Putative restriction endonuclease - - - 0.0000000000249 72.0
YYD1_k127_291448_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005459 547.0
YYD1_k127_291448_1 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 368.0
YYD1_k127_291448_2 Sugar (and other) transporter K08153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 354.0
YYD1_k127_291448_3 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000004252 252.0
YYD1_k127_291448_4 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000000000000000002473 138.0
YYD1_k127_2940223_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1330.0
YYD1_k127_2940223_1 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 318.0
YYD1_k127_2940223_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 308.0
YYD1_k127_2940223_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000008254 250.0
YYD1_k127_2940223_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000001156 245.0
YYD1_k127_2940223_5 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000001823 165.0
YYD1_k127_2940223_6 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000001187 155.0
YYD1_k127_2940223_7 Biotin/lipoate A/B protein ligase family K03800 - 6.3.1.20 0.0000000000000000000000000000000000001678 152.0
YYD1_k127_2940223_8 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000002962 91.0
YYD1_k127_3040666_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.000000000000000000000000000000000000000000000000000000000000002408 222.0
YYD1_k127_3040666_1 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000003128 219.0
YYD1_k127_3040666_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000008251 134.0
YYD1_k127_3040666_3 pfam nlp p60 - - - 0.00000000000000000000003067 112.0
YYD1_k127_3040666_5 Molecular chaperone. Has ATPase activity K04079 - - 0.00004244 54.0
YYD1_k127_3040666_6 PFAM Biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.0001969 49.0
YYD1_k127_3153306_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 297.0
YYD1_k127_3153306_1 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.0000000000000000000000000000000000000000000000000001326 195.0
YYD1_k127_3153306_2 Participates in the control of copper homeostasis K06201 - - 0.000000000000000000000000000000000000000000002819 175.0
YYD1_k127_3153306_3 Glycosyl transferase, family 9 K02843 - - 0.000000000000000000000000000000000002552 151.0
YYD1_k127_3170443_0 D-aminopeptidase K16203 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 295.0
YYD1_k127_3170443_1 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000000000000000000000000034 200.0
YYD1_k127_3170443_2 TonB-dependent Receptor Plug - - - 0.00000000000000000000000000000002104 146.0
YYD1_k127_3170443_3 Peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.0004391 52.0
YYD1_k127_321997_0 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 420.0
YYD1_k127_321997_1 ApaG domain K06195 - - 0.000000000000000000000000000000000000000000000001257 179.0
YYD1_k127_321997_2 - - - - 0.00000000000000000000000002174 116.0
YYD1_k127_321997_3 YceI-like domain - - - 0.0000000000000000000007504 108.0
YYD1_k127_321997_4 Domain of unknown function (DUF4142) K08995 - - 0.000000000000000000001346 108.0
YYD1_k127_321997_5 Belongs to the acetyltransferase family. ArgA subfamily K00619 - 2.3.1.1 0.000000000000000000001691 104.0
YYD1_k127_321997_6 Endoribonuclease L-PSP - - - 0.0002089 49.0
YYD1_k127_3222867_0 Anthranilate synthase component I, N terminal region K01657 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 443.0
YYD1_k127_3222867_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004974 412.0
YYD1_k127_3222867_10 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000001005 184.0
YYD1_k127_3222867_11 methylated-DNA-[protein]-cysteine S-methyltransferase activity K00567,K10778 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.0000000000000000000000000000000000000000000000001977 194.0
YYD1_k127_3222867_12 Protein of unknown function (DUF1697) - - - 0.000000000000000000000000000000000000000004939 160.0
YYD1_k127_3222867_13 Protein of unknown function (DUF3574) - - - 0.0000000000000000000000000000000000000002157 153.0
YYD1_k127_3222867_14 Alpha beta hydrolase - - - 0.00000000000000000000000000000002249 129.0
YYD1_k127_3222867_15 Arginase family K01476 - 3.5.3.1 0.0000000000000000000000000000001006 141.0
YYD1_k127_3222867_16 Putative stress-induced transcription regulator - - - 0.0000000000000000000000001359 114.0
YYD1_k127_3222867_2 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 392.0
YYD1_k127_3222867_3 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 353.0
YYD1_k127_3222867_4 Oxygenase, catalysing oxidative methylation of damaged DNA K09990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002334 286.0
YYD1_k127_3222867_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001203 298.0
YYD1_k127_3222867_6 methylisocitrate lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002738 267.0
YYD1_k127_3222867_7 AlkA N-terminal domain K13529,K13530 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000005103 236.0
YYD1_k127_3222867_8 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000002838 197.0
YYD1_k127_3222867_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.000000000000000000000000000000000000000000000000001824 188.0
YYD1_k127_3223926_0 PFAM DSBA oxidoreductase - - - 0.0000000000000000000000000000000009761 146.0
YYD1_k127_3223926_1 nucleotidyltransferase activity - - - 0.0000000000000000000000025 115.0
YYD1_k127_3223926_2 TPM domain K06872 - - 0.0000000000000000001461 104.0
YYD1_k127_3228153_0 Elongation factor SelB winged helix 3 K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003973 289.0
YYD1_k127_3228153_1 cobalamin-transporting ATPase activity K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003888 285.0
YYD1_k127_3228153_2 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000001607 104.0
YYD1_k127_3228153_3 amine dehydrogenase activity - - - 0.000000000000000003455 99.0
YYD1_k127_3261235_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 434.0
YYD1_k127_3261235_1 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001421 246.0
YYD1_k127_3261235_2 Conserved Protein - - - 0.00000000000000000002889 93.0
YYD1_k127_3261235_3 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5 0.00000000000000000007041 93.0
YYD1_k127_3298666_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 336.0
YYD1_k127_3298666_1 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007326 304.0
YYD1_k127_3298666_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000001302 251.0
YYD1_k127_3298666_3 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000005633 227.0
YYD1_k127_3298666_4 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.00000006764 59.0
YYD1_k127_3298666_5 Regulates arginine biosynthesis genes K03402 - - 0.0002446 53.0
YYD1_k127_3303891_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 GO:0000018,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009892,GO:0009987,GO:0010605,GO:0016020,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031324,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0045910,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051716,GO:0060255,GO:0060542,GO:0060543,GO:0065007,GO:0071944,GO:0080090 - 4.245e-275 863.0
YYD1_k127_3303891_1 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 2.137e-274 867.0
YYD1_k127_3303891_2 amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001535 297.0
YYD1_k127_3303891_3 Serine dehydratase beta chain K01752 - 4.3.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000001036 256.0
YYD1_k127_3303891_4 Serine dehydratase alpha chain K01752 - 4.3.1.17 0.0000000000000000000000000000000000000000000000000000000000003937 241.0
YYD1_k127_3488578_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008295 455.0
YYD1_k127_3488578_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002884 261.0
YYD1_k127_3488578_2 Putative glycosyl hydrolase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006833 270.0
YYD1_k127_3488578_3 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000002081 232.0
YYD1_k127_3488578_4 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000007601 213.0
YYD1_k127_3488578_5 pilus organization K07004 - - 0.00000000000000000000000000000000000000007982 170.0
YYD1_k127_3488578_6 Serine aminopeptidase, S33 - - - 0.000000000000000000003993 105.0
YYD1_k127_3488578_7 Rdx family K07401 - - 0.00000000004805 64.0
YYD1_k127_350048_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007827 401.0
YYD1_k127_350048_1 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 377.0
YYD1_k127_350048_2 Competence-damaged protein K03742 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004816 383.0
YYD1_k127_350048_3 Roadblock/LC7 domain - - - 0.000000000000000000000000000000000000000000000000004137 186.0
YYD1_k127_350048_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000003168 172.0
YYD1_k127_350048_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000003923 128.0
YYD1_k127_350048_6 - - - - 0.0000000001766 65.0
YYD1_k127_3516589_0 Glucose inhibited division protein A K21401 - 1.3.99.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000005577 282.0
YYD1_k127_3516589_1 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000172 156.0
YYD1_k127_3516589_2 Integral membrane protein DUF92 - GO:0005575,GO:0016020 - 0.000000000000000000000000000000000003287 147.0
YYD1_k127_3516589_3 Flavin reductase like domain - - - 0.00000000000000000000000000000000003429 146.0
YYD1_k127_3516589_4 - - - - 0.0000000000001188 82.0
YYD1_k127_3516589_5 Methyltransferase domain - - - 0.0000000000001964 79.0
YYD1_k127_3516589_6 AntiSigma factor - GO:0000988,GO:0000989,GO:0003674,GO:0005488,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009593,GO:0009628,GO:0009889,GO:0010556,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0042221,GO:0043167,GO:0043169,GO:0043934,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051606,GO:0051775,GO:0051776,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.0000007433 61.0
YYD1_k127_3538045_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 435.0
YYD1_k127_3538045_1 Zn_pept - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002545 253.0
YYD1_k127_3538045_2 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000002522 237.0
YYD1_k127_3538045_3 of the major facilitator superfamily K08151 - - 0.000000000000000000000000000000000000000000000000000000000000000986 233.0
YYD1_k127_3538045_4 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000001257 202.0
YYD1_k127_3538045_5 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000004801 213.0
YYD1_k127_3538045_6 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000005645 112.0
YYD1_k127_3540528_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 1.615e-226 731.0
YYD1_k127_3540528_1 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007188 586.0
YYD1_k127_3540528_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000472 372.0
YYD1_k127_3540528_3 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000001009 199.0
YYD1_k127_3540528_4 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000002861 174.0
YYD1_k127_3540528_5 Sporulation related domain - - - 0.0000000000000000002572 104.0
YYD1_k127_3540528_6 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000001049 75.0
YYD1_k127_3562449_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 562.0
YYD1_k127_3562449_1 Fumarylacetoacetase N-terminal K01555 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 522.0
YYD1_k127_3562449_10 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000003089 67.0
YYD1_k127_3562449_11 Iron-binding zinc finger CDGSH type K05710 - - 0.000004396 59.0
YYD1_k127_3562449_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008684 378.0
YYD1_k127_3562449_3 Zn-dependent protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 352.0
YYD1_k127_3562449_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 336.0
YYD1_k127_3562449_5 histidyl-tRNA synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000003976 234.0
YYD1_k127_3562449_6 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000001871 160.0
YYD1_k127_3562449_7 Rhomboid family - - - 0.000000000000000000000000000000000483 141.0
YYD1_k127_3562449_8 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000000000001721 129.0
YYD1_k127_3562449_9 Ribosomal protein L34 K02914 - - 0.0000000000000001559 79.0
YYD1_k127_3584847_0 Homoserine dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 561.0
YYD1_k127_3584847_1 epimerase dehydratase K01710,K01784 - 4.2.1.46,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 507.0
YYD1_k127_3584847_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00066 - 1.1.1.132 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 487.0
YYD1_k127_3584847_3 GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001404 254.0
YYD1_k127_3584847_4 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008830,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.1.3.13 0.00000000000000000000000000000000000000000000000001913 196.0
YYD1_k127_3584847_5 Glycosyl Transferase - - - 0.0000000000000000000000000000000001908 144.0
YYD1_k127_359542_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009589 516.0
YYD1_k127_359542_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001939 482.0
YYD1_k127_359542_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000005132 232.0
YYD1_k127_359542_3 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000003628 183.0
YYD1_k127_359542_4 - - - - 0.0000000000000000000000000000000005027 137.0
YYD1_k127_359542_5 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000002608 75.0
YYD1_k127_3610681_0 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006661 546.0
YYD1_k127_3610681_1 Peptidase, M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005899 471.0
YYD1_k127_3610681_2 Deoxyribodipyrimidine photo-lyase K01669 - 4.1.99.3 0.000000000000000000000000000007738 125.0
YYD1_k127_3633071_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 477.0
YYD1_k127_3633071_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 473.0
YYD1_k127_3633071_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 308.0
YYD1_k127_3633071_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006231 312.0
YYD1_k127_3633071_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000003031 172.0
YYD1_k127_3633071_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000002598 157.0
YYD1_k127_3633071_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000268 152.0
YYD1_k127_3633071_7 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488 - 3.5.4.4 0.000000000000000000000000000000002249 131.0
YYD1_k127_3633071_8 PFAM glycosyl transferase family 9 K02843 - - 0.000000000000000000000000003337 112.0
YYD1_k127_3633071_9 COG1862 Preprotein translocase subunit YajC K03210 - - 0.00000000000009234 84.0
YYD1_k127_3730631_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000003067 246.0
YYD1_k127_3730631_1 Domain of unknown function (DUF3943) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001795 248.0
YYD1_k127_3730631_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000003342 241.0
YYD1_k127_3730631_3 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000000004327 163.0
YYD1_k127_3753206_0 Multicopper oxidase K00368,K22348 - 1.16.3.3,1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008534 424.0
YYD1_k127_3753206_1 mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004105 365.0
YYD1_k127_3753206_2 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000001183 282.0
YYD1_k127_3753206_3 Predicted membrane protein (DUF2238) K08984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000187 258.0
YYD1_k127_3753206_4 membrane - - - 0.0000000000000000000000000000000000000000000000000000000216 201.0
YYD1_k127_3753206_5 Putative lumazine-binding - - - 0.0000000000000000000000000000000001042 139.0
YYD1_k127_3753206_6 translation initiation factor activity K06996 - - 0.0000000000000000000000000000001845 138.0
YYD1_k127_3753206_7 acetyltransferase K06975 - - 0.00000000000004814 81.0
YYD1_k127_3753206_8 ketosteroid isomerase - - - 0.00008123 52.0
YYD1_k127_3777544_0 belongs to the sigma-70 factor family K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009646 580.0
YYD1_k127_3777544_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000004876 197.0
YYD1_k127_3777544_2 cobalamin binding K22491 - - 0.00000000000000000000000000000000000000000000000000005143 197.0
YYD1_k127_3777544_3 COG2335 Secreted and surface protein containing fasciclin-like repeats - - - 0.0000000000000000000000000000000000000000000000000000576 191.0
YYD1_k127_3777544_4 - - - - 0.0000000000000000000000000000000000000000000000003196 185.0
YYD1_k127_3777544_5 PFAM YCII-related - - - 0.00000000000000000000000000000000000000000000001493 185.0
YYD1_k127_3777544_6 - - - - 0.0000000000000000001007 98.0
YYD1_k127_3777544_7 peptidase activity - - - 0.0000000006493 63.0
YYD1_k127_3777544_8 SnoaL-like domain - - - 0.0001765 46.0
YYD1_k127_3797477_0 lipopolysaccharide 3-alpha-galactosyltransferase activity - - - 0.000000000000000000000000001883 123.0
YYD1_k127_3797477_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000005186 68.0
YYD1_k127_3839740_0 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 582.0
YYD1_k127_3839740_1 PFAM Integral membrane protein TerC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 295.0
YYD1_k127_3839740_3 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000006676 222.0
YYD1_k127_3839740_4 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000001564 189.0
YYD1_k127_3839740_5 ArsC family - - - 0.0000000000000000000000000000000000000000002498 162.0
YYD1_k127_3839740_6 AI-2E family transporter - - - 0.000000000000000000000000000000000000000007753 175.0
YYD1_k127_3864532_0 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 551.0
YYD1_k127_3864532_1 Apoptosis-inducing factor, mitochondrion-associated, C-term - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 347.0
YYD1_k127_3864532_2 membrane - - - 0.00000000000000000000000004668 118.0
YYD1_k127_3864532_3 Dodecin K09165 - - 0.0000000000000000001235 89.0
YYD1_k127_3864532_4 DinB family - - - 0.0000000000000000001332 96.0
YYD1_k127_3881011_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 623.0
YYD1_k127_3881011_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005363 487.0
YYD1_k127_3881011_2 Phosphoglucose isomerase K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006919 408.0
YYD1_k127_3881011_3 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 317.0
YYD1_k127_3881011_4 thiolester hydrolase activity K06889 - - 0.00000000000000000000002423 109.0
YYD1_k127_3881011_5 SMART Tetratricopeptide domain protein - - - 0.000000001405 61.0
YYD1_k127_3913320_0 protein kinase activity - - - 4.081e-285 901.0
YYD1_k127_3913320_1 protein kinase activity - - - 2.012e-203 683.0
YYD1_k127_3913320_2 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006159 400.0
YYD1_k127_3913320_3 protein kinase activity - - - 0.000000000000000000000000006225 118.0
YYD1_k127_3913320_4 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.00000000000222 70.0
YYD1_k127_3938816_0 Elongation factor G, domain IV K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007671 589.0
YYD1_k127_3938816_1 DinB superfamily - - - 0.00000000000000000000000000000000000000000000007933 174.0
YYD1_k127_3938816_3 Tetratricopeptide repeat - - - 0.000000000000000472 81.0
YYD1_k127_3938816_4 BFD-like [2Fe-2S] binding domain - - - 0.0000000004084 66.0
YYD1_k127_4004597_0 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772,K03815 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009652 316.0
YYD1_k127_4004597_1 Domain of unknown function (DUF892) - - - 0.000000000000000000000000000000000000001207 163.0
YYD1_k127_4004597_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000001153 143.0
YYD1_k127_4004597_3 Protein of unknown function (DUF4242) - - - 0.00000000000000000000000000000000008996 135.0
YYD1_k127_4004597_4 positive regulation of type IV pilus biogenesis K07343 - - 0.00000000000000000000000001452 120.0
YYD1_k127_4004597_5 - - - - 0.00000000000000000000000003698 117.0
YYD1_k127_4011180_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001841 274.0
YYD1_k127_4011180_1 ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component - - - 0.0000000000000000000000000000000000000000000000000003045 192.0
YYD1_k127_4011180_2 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000001807 147.0
YYD1_k127_4011180_3 - - - - 0.000000000000000000000000000000000005039 158.0
YYD1_k127_4011180_4 EamA-like transporter family - - - 0.00000000000000000000000000002774 125.0
YYD1_k127_4011180_5 Thioesterase superfamily K07107 - - 0.000000000000000000000001456 109.0
YYD1_k127_4011180_7 Two component, sigma54 specific, transcriptional regulator, Fis family K07714,K19641 - - 0.000002134 56.0
YYD1_k127_4028257_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006658 464.0
YYD1_k127_4028257_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000002344 190.0
YYD1_k127_4028257_2 Lipopolysaccharide-assembly - - - 0.00000000000000000000000000000000000000002544 158.0
YYD1_k127_4028257_3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.000000000000000000000000000000000000000153 160.0
YYD1_k127_4028257_4 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000002068 139.0
YYD1_k127_4028257_5 Sodium/hydrogen exchanger family - - - 0.000000000000000000002699 100.0
YYD1_k127_4028257_6 - - - - 0.000002431 57.0
YYD1_k127_4045935_0 Ribosomal protein S2 K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 342.0
YYD1_k127_4045935_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000001003 220.0
YYD1_k127_4045935_2 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000001842 228.0
YYD1_k127_4045935_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000005672 207.0
YYD1_k127_4045935_4 Ribosomal protein S9/S16 K02996 - - 0.00000000000000000000000000000000000000000000006441 180.0
YYD1_k127_4045935_5 Biotin-requiring enzyme - - - 0.00000000000000000000000000004491 132.0
YYD1_k127_4045935_6 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000001333 83.0
YYD1_k127_4045935_7 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000001254 58.0
YYD1_k127_4055719_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004813 567.0
YYD1_k127_4055719_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 322.0
YYD1_k127_4055719_2 CarboxypepD_reg-like domain K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 332.0
YYD1_k127_4055719_3 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000003288 275.0
YYD1_k127_4055719_4 zinc D-Ala-D-Ala carboxypeptidase activity K08641 - 3.4.13.22 0.0000000000000000000000000000000000000000000000000000000000000324 235.0
YYD1_k127_4055719_5 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.000000000000000000000000000000000000000000000567 169.0
YYD1_k127_4055719_6 Transcription elongation factor, N-terminal K03624 - - 0.00000000000000000000000000000000000000000003267 167.0
YYD1_k127_4055719_7 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - - - 0.000000000000000000000000000000000000006119 148.0
YYD1_k127_4055719_8 - - - - 0.000000000000000000000000000006813 133.0
YYD1_k127_4076669_0 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003583 425.0
YYD1_k127_4076669_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002295 331.0
YYD1_k127_4076669_2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004503 319.0
YYD1_k127_4076669_3 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000302 143.0
YYD1_k127_4076669_4 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.0000000000000000000000000000000005004 147.0
YYD1_k127_4076669_5 SMART nuclease (SNase domain-containing protein) K01174 - 3.1.31.1 0.0000000000000000000002722 103.0
YYD1_k127_4076669_6 Peptidase family M50 K06402 - - 0.000009252 51.0
YYD1_k127_4076669_7 Histidine kinase - - - 0.0007442 43.0
YYD1_k127_4084437_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.0 1108.0
YYD1_k127_4084437_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000002728 149.0
YYD1_k127_4084437_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.0000000000000000000001015 111.0
YYD1_k127_415214_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005599 486.0
YYD1_k127_415214_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000006234 256.0
YYD1_k127_415214_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000007104 215.0
YYD1_k127_415214_3 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000009271 169.0
YYD1_k127_415214_4 Two component regulator propeller - - - 0.000000000000000000000000000000001144 150.0
YYD1_k127_415214_5 - - - - 0.00000000000000000000000000472 111.0
YYD1_k127_415214_6 Anthranilate synthase K01658 - 4.1.3.27 0.0000639 48.0
YYD1_k127_4154587_0 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 527.0
YYD1_k127_4154587_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 456.0
YYD1_k127_4154587_2 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 357.0
YYD1_k127_4248475_0 POT family K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 501.0
YYD1_k127_4248475_1 histidine kinase A domain protein K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000003075 265.0
YYD1_k127_4248475_2 - - - - 0.000000000000000000000000000000000000000000000000000000002278 211.0
YYD1_k127_4248475_3 - - - - 0.000000000000002318 83.0
YYD1_k127_4248475_4 PFAM Glycosyl transferase, group 1 - - - 0.000002681 60.0
YYD1_k127_4252929_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008135 454.0
YYD1_k127_4252929_1 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000001071 178.0
YYD1_k127_4299704_0 PFAM multicopper oxidase type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 408.0
YYD1_k127_4299704_1 transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006048 280.0
YYD1_k127_4299704_2 NUDIX domain - - - 0.000000000000000000000000000000000001654 146.0
YYD1_k127_4299704_3 3-Beta hydroxysteroid dehydrogenase isomerase K21271,K22320 - 1.1.1.394,1.1.1.412 0.0001175 53.0
YYD1_k127_4360251_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 359.0
YYD1_k127_4360251_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 309.0
YYD1_k127_4360251_2 Cell cycle protein K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003378 261.0
YYD1_k127_4360251_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008764,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.9 0.0000000000000000000001753 99.0
YYD1_k127_4463503_0 Required for chromosome condensation and partitioning K03529 - - 1.437e-274 889.0
YYD1_k127_4463503_1 Involved in the tonB-independent uptake of proteins - - - 5.942e-262 843.0
YYD1_k127_4463503_10 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000007689 136.0
YYD1_k127_4463503_11 Sporulation related domain - - - 0.000000000000000000000000009508 125.0
YYD1_k127_4463503_12 Control of competence regulator ComK, YlbF/YmcA - - - 0.00000000000000000006045 94.0
YYD1_k127_4463503_2 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 482.0
YYD1_k127_4463503_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 449.0
YYD1_k127_4463503_4 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005557 448.0
YYD1_k127_4463503_5 Dihydroxyacetone kinase family K07030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 307.0
YYD1_k127_4463503_6 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000003715 188.0
YYD1_k127_4463503_7 PFAM NADP oxidoreductase coenzyme F420-dependent - - - 0.00000000000000000000000000000000000000001941 165.0
YYD1_k127_4463503_8 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000002858 151.0
YYD1_k127_4463503_9 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000001511 127.0
YYD1_k127_4515380_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 3.091e-198 629.0
YYD1_k127_4515380_1 decarboxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 428.0
YYD1_k127_4515380_2 Type I phosphodiesterase / nucleotide pyrophosphatase K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 348.0
YYD1_k127_4515380_3 Domain of unknown function (DUF4382) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007952 274.0
YYD1_k127_4515380_4 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000001434 191.0
YYD1_k127_4515380_5 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000002051 164.0
YYD1_k127_4515380_6 Rhomboid family - - - 0.000000000000000000000000000002486 132.0
YYD1_k127_4515380_7 amine dehydrogenase activity - - - 0.000000000000000004239 100.0
YYD1_k127_4536835_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1049.0
YYD1_k127_4536835_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005957 291.0
YYD1_k127_4536835_2 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000001011 206.0
YYD1_k127_4536835_3 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000000000000000000000000000000000000000002545 200.0
YYD1_k127_4536835_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000008047 164.0
YYD1_k127_4536835_5 Chemotaxis protein CheA K03407 - 2.7.13.3 0.00000000000003938 82.0
YYD1_k127_4536835_6 COG0835 Chemotaxis signal transduction protein K03408 - - 0.00000000003239 74.0
YYD1_k127_4541376_0 pilus organization - - - 0.0000000000000000000000000000000000000001437 163.0
YYD1_k127_4541376_3 Domain of unknown function (DUF4402) - - - 0.0004157 50.0
YYD1_k127_457249_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 418.0
YYD1_k127_457249_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 327.0
YYD1_k127_457249_2 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000000000000001463 222.0
YYD1_k127_457249_3 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000009832 216.0
YYD1_k127_457249_4 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000005 191.0
YYD1_k127_457249_5 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000006163 189.0
YYD1_k127_457249_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.00000000000000000000000000000000000000001502 164.0
YYD1_k127_4592459_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 512.0
YYD1_k127_4592459_1 Elongator protein 3, MiaB family, Radical SAM K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 500.0
YYD1_k127_4592459_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002819 296.0
YYD1_k127_4592459_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001359 246.0
YYD1_k127_4592459_4 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.0000000000000000000000000000000000000000000000001095 187.0
YYD1_k127_4592459_5 FtsZ-dependent cytokinesis - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00002366 51.0
YYD1_k127_4612067_0 Anthranilate synthase component I, N terminal region K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007012 309.0
YYD1_k127_4612067_1 - - - - 0.00000000000000000000000000000000000000000000000000000000002914 213.0
YYD1_k127_464649_0 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 450.0
YYD1_k127_464649_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003743 337.0
YYD1_k127_464649_2 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 321.0
YYD1_k127_464649_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005458 304.0
YYD1_k127_4669861_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.146e-264 860.0
YYD1_k127_4669861_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 463.0
YYD1_k127_4669861_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 323.0
YYD1_k127_4669861_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009057 263.0
YYD1_k127_4669861_4 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000001871 200.0
YYD1_k127_4669861_5 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000002045 191.0
YYD1_k127_4669861_6 LppC putative lipoprotein - - - 0.00000000000000000004354 94.0
YYD1_k127_4669867_0 LVIVD repeat - - - 5.623e-266 869.0
YYD1_k127_4669867_1 Alpha-L-fucosidase K01206 - 3.2.1.51 4.154e-203 639.0
YYD1_k127_4669867_2 Metallopeptidase family M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 408.0
YYD1_k127_4669867_3 Domain of unknown function (DUF305) - - - 0.00000000000000000000000000000000000000000000000000000000005985 213.0
YYD1_k127_4669867_4 Putative esterase K07017 - - 0.000000000000000000000000000000000000000000000000000000000293 218.0
YYD1_k127_4669867_5 - - - - 0.0000000000000000000000000000000000000000000000000000017 202.0
YYD1_k127_4669867_6 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000001636 143.0
YYD1_k127_4684014_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 2.626e-223 730.0
YYD1_k127_4684014_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002546 252.0
YYD1_k127_4684014_2 protein tyrosine phosphatase activity K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000006586 189.0
YYD1_k127_4684014_3 regulation of DNA repair K03565 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000005676 83.0
YYD1_k127_4684014_4 SIS domain K03271 - 5.3.1.28 0.000000004388 64.0
YYD1_k127_470839_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009358 418.0
YYD1_k127_470839_1 Aminotransferase class-V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002846 386.0
YYD1_k127_470839_2 Prolyl oligopeptidase family - - - 0.000000000000000000001059 106.0
YYD1_k127_4713815_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 422.0
YYD1_k127_4713815_1 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 349.0
YYD1_k127_4713815_11 - - - - 0.0006667 44.0
YYD1_k127_4713815_2 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 306.0
YYD1_k127_4713815_3 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001256 253.0
YYD1_k127_4713815_4 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000003194 229.0
YYD1_k127_4713815_5 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000001239 210.0
YYD1_k127_4713815_6 NUDIX domain - - - 0.0000000000000000000000000000000000000000000279 173.0
YYD1_k127_4713815_7 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000005279 151.0
YYD1_k127_4713815_8 cAMP biosynthetic process K12132 - 2.7.11.1 0.00000000000000000000000000000001538 144.0
YYD1_k127_4713815_9 - - - - 0.000000004289 63.0
YYD1_k127_4715344_0 Asparaginase K01444 - 3.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 376.0
YYD1_k127_4715344_1 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008864 282.0
YYD1_k127_4715344_2 Acyl-ACP thioesterase - - - 0.0000000000000000000000000000000000000000004582 162.0
YYD1_k127_4715344_3 Thioredoxin - - - 0.0000000000000000000000000000000000001376 157.0
YYD1_k127_4715344_4 Calcineurin-like phosphoesterase - - - 0.00008768 54.0
YYD1_k127_4715344_5 Outer membrane protein beta-barrel domain - - - 0.0001466 52.0
YYD1_k127_4755808_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 324.0
YYD1_k127_4755808_1 Serine phosphatase RsbU, regulator of sigma subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 322.0
YYD1_k127_4755808_2 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000003043 254.0
YYD1_k127_4755808_3 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000116 221.0
YYD1_k127_4755808_4 ECF transporter, substrate-specific component K16923 - - 0.0000000000000000000000008522 111.0
YYD1_k127_4755808_5 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000000000000001651 109.0
YYD1_k127_4755808_6 STAS domain K06378 - - 0.0000000000001573 74.0
YYD1_k127_4755808_7 Histidine kinase-like ATPase domain - - - 0.00000000002462 67.0
YYD1_k127_4772318_0 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 331.0
YYD1_k127_4772318_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000003948 192.0
YYD1_k127_4772318_2 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000005081 181.0
YYD1_k127_4772318_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000002869 127.0
YYD1_k127_4782403_0 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 572.0
YYD1_k127_4782403_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 326.0
YYD1_k127_4782403_2 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000001597 174.0
YYD1_k127_4782403_3 - - - - 0.0000000000000000000000000000000009642 138.0
YYD1_k127_4782403_4 Predicted membrane protein (DUF2214) K08983 - - 0.00000000000000000000003184 104.0
YYD1_k127_4782403_6 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000006699 97.0
YYD1_k127_4811822_0 ATP-dependent peptidase activity K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 439.0
YYD1_k127_4811822_1 - - - - 0.00000000000000000000000000000000000000000000000000000007433 209.0
YYD1_k127_4811822_2 peptidase - - - 0.00000000000000000000000000000000000000000000000118 184.0
YYD1_k127_4811822_3 Sugar-specific transcriptional regulator TrmB - - - 0.00000000004696 76.0
YYD1_k127_4829478_0 PglZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 595.0
YYD1_k127_4829478_1 ABC transporter transmembrane region K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 475.0
YYD1_k127_4829478_2 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000001981 200.0
YYD1_k127_4829478_3 DUF based on E. rectale Gene description (DUF3880) K06320 - - 0.0000000000000000000006529 113.0
YYD1_k127_4829478_4 DUF based on E. rectale Gene description (DUF3880) K06320 - - 0.00000000129 70.0
YYD1_k127_4829478_5 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02841,K02843,K02849 - - 0.00000001519 59.0
YYD1_k127_4829478_6 Glycosyl transferases group 1 K13668 GO:0000009,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0033164,GO:0040007,GO:0043750,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.4.1.346 0.00008544 47.0
YYD1_k127_4829478_7 ribosomal protein - - - 0.000426 53.0
YYD1_k127_4888959_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 406.0
YYD1_k127_4888959_1 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000003857 203.0
YYD1_k127_4888959_2 Ham1 family K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000036 190.0
YYD1_k127_4888959_3 Methyltransferase domain - - - 0.0000000000000000000000000000001891 129.0
YYD1_k127_4888959_4 chitin binding - - - 0.00000000000000000000000003084 121.0
YYD1_k127_4888959_5 Methyltransferase domain - - - 0.00000000000142 79.0
YYD1_k127_4888959_6 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.0000000009855 60.0
YYD1_k127_4895820_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 387.0
YYD1_k127_4895820_1 Conserved TM helix - - - 0.0000000000000000000000000000000000000000000000009429 190.0
YYD1_k127_4895820_2 - - - - 0.00000000000000000000000000000000000000000002021 167.0
YYD1_k127_4895820_3 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000002259 160.0
YYD1_k127_4895820_4 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000000000000001199 154.0
YYD1_k127_4895820_5 - - - - 0.000000000000000001895 98.0
YYD1_k127_4895820_6 2Fe-2S iron-sulfur cluster binding domain K05299 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016651,GO:0044237,GO:0044424,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.17.1.10 0.00000000000000004172 88.0
YYD1_k127_4895820_7 NHL repeat - - - 0.00000000001319 76.0
YYD1_k127_4895820_8 - - - - 0.0000000003139 73.0
YYD1_k127_4895820_9 Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily - - - 0.0003834 46.0
YYD1_k127_4902875_0 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.0000000000000000000000000000000000005104 152.0
YYD1_k127_4902875_1 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000005412 122.0
YYD1_k127_4902875_2 PBS lyase HEAT-like repeat - - - 0.0000000000009047 81.0
YYD1_k127_4909481_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1484.0
YYD1_k127_4909481_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 521.0
YYD1_k127_4909481_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 391.0
YYD1_k127_4909481_3 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 364.0
YYD1_k127_4909481_4 Domain of unknown function (DUF4142) K08995 - - 0.00000000000000000000000000000000000000000000000000000001919 202.0
YYD1_k127_4909481_5 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000007817 187.0
YYD1_k127_4909481_6 DinB family - - - 0.00000000000000000000000000000000000009505 149.0
YYD1_k127_4909481_7 COG4635 Flavodoxin K00230 - 1.3.5.3 0.00000000000000000000000000000005158 136.0
YYD1_k127_4909481_8 efflux transmembrane transporter activity - - - 0.000000000000000000000000004366 117.0
YYD1_k127_4909481_9 Acetyltransferase (GNAT) domain - - - 0.000000006998 61.0
YYD1_k127_4933874_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 370.0
YYD1_k127_4933874_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004907 276.0
YYD1_k127_4933874_2 - - - - 0.000000000004788 72.0
YYD1_k127_4942603_0 depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000001122 214.0
YYD1_k127_4942603_1 cytochrome c oxidase K02351,K02862 - - 0.0000000000000000000000000000000000000000000000000004968 197.0
YYD1_k127_4942603_2 Copper chaperone PCu(A)C K03619,K07152,K09796 GO:0003674,GO:0005048,GO:0005488,GO:0033218,GO:0042277 - 0.00000000000000000000000000000000000000000000000002931 195.0
YYD1_k127_4942603_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000002247 153.0
YYD1_k127_4942603_4 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000002581 111.0
YYD1_k127_4942603_6 TonB-dependent receptor - - - 0.0000000000000000008412 99.0
YYD1_k127_4943708_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 6.39e-267 841.0
YYD1_k127_4943708_1 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008018 563.0
YYD1_k127_4943708_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000001196 237.0
YYD1_k127_4943708_3 Protein of unknown function (DUF721) - - - 0.0000000000000008973 82.0
YYD1_k127_4943708_4 Tetratricopeptide repeat - - - 0.000000000587 65.0
YYD1_k127_4955469_0 DNA polymerase beta thumb K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 599.0
YYD1_k127_4955469_1 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 338.0
YYD1_k127_4955469_10 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000002749 79.0
YYD1_k127_4955469_11 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000249 72.0
YYD1_k127_4955469_12 - - - - 0.00006711 46.0
YYD1_k127_4955469_13 Acetyltransferase (GNAT) family - - - 0.0002541 53.0
YYD1_k127_4955469_2 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003614 289.0
YYD1_k127_4955469_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003564 241.0
YYD1_k127_4955469_4 phosphoribosyltransferase K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000009835 235.0
YYD1_k127_4955469_5 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000000000000000000000008929 217.0
YYD1_k127_4955469_6 phosphoribosyltransferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000003918 213.0
YYD1_k127_4955469_7 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000001413 158.0
YYD1_k127_4955469_8 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000000000000000000000000000000007056 164.0
YYD1_k127_4955469_9 DNA-directed DNA polymerase activity K02347,K03581,K04477 - 3.1.11.5 0.000000000000000000002863 96.0
YYD1_k127_4958201_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 488.0
YYD1_k127_4958201_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 426.0
YYD1_k127_4958201_2 MacB-like periplasmic core domain K09808 - - 0.0000000000000000000000000000000000000000000000000000000004682 212.0
YYD1_k127_4958201_3 - - - - 0.000000000000000000000000000000000000000000005446 171.0
YYD1_k127_498620_0 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 341.0
YYD1_k127_498620_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000001925 265.0
YYD1_k127_498620_2 lipid kinase activity - - - 0.000000000000000000000000000000000003301 144.0
YYD1_k127_498620_3 DinB superfamily - - - 0.0000000000000003658 85.0
YYD1_k127_4990062_0 Lytic transglycosylase catalytic K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000007659 233.0
YYD1_k127_4990062_1 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000007576 222.0
YYD1_k127_4990062_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000001581 184.0
YYD1_k127_4990062_3 Transglycosylase SLT domain - - - 0.0000000000000000000000000000002664 132.0
YYD1_k127_4990062_4 cAMP biosynthetic process - - - 0.000000000003659 68.0
YYD1_k127_5011798_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008601 622.0
YYD1_k127_5011798_1 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 426.0
YYD1_k127_5011798_2 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 349.0
YYD1_k127_5011798_3 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000001705 160.0
YYD1_k127_5011798_4 - - - - 0.000000000000000000000000000000000000001014 168.0
YYD1_k127_5011798_5 Lipopolysaccharide-assembly, LptC-related - - - 0.000000000000000001395 94.0
YYD1_k127_5011798_6 SIS domain K06041 - 5.3.1.13 0.00000000000002253 74.0
YYD1_k127_5027105_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 540.0
YYD1_k127_5027105_1 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004946 266.0
YYD1_k127_5027105_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000004949 239.0
YYD1_k127_5027105_3 Polymer-forming cytoskeletal - - - 0.00000000000000000000000131 119.0
YYD1_k127_5027105_4 - - - - 0.0000001463 60.0
YYD1_k127_5043084_0 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 484.0
YYD1_k127_5043084_1 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 443.0
YYD1_k127_5043084_2 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 347.0
YYD1_k127_5043084_3 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000009811 205.0
YYD1_k127_5043084_4 DUF218 domain - - - 0.000000000000000000000000000000002297 148.0
YYD1_k127_5043084_5 Transcriptional regulator - - - 0.000000000000000000001537 111.0
YYD1_k127_5043084_6 AAA ATPase domain - - - 0.00000006186 66.0
YYD1_k127_5088062_0 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001532 262.0
YYD1_k127_5088062_1 creatininase K01470,K22232 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000001799 192.0
YYD1_k127_5106750_0 UbiA prenyltransferase family K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003688 285.0
YYD1_k127_5106750_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000003361 263.0
YYD1_k127_5106750_2 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000003322 137.0
YYD1_k127_5106750_3 GIY-YIG type nucleases (URI domain) K03703 - - 0.00000000000000000000000298 108.0
YYD1_k127_5106750_4 Peptidase family M23 - - - 0.000007043 55.0
YYD1_k127_5108170_0 Putative zinc-binding metallo-peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 460.0
YYD1_k127_5108170_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 426.0
YYD1_k127_5108170_2 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000008963 170.0
YYD1_k127_5108170_3 Histidine kinase - - - 0.000000000000000000173 101.0
YYD1_k127_5139082_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 1.122e-281 892.0
YYD1_k127_5139082_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 595.0
YYD1_k127_5139082_2 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 604.0
YYD1_k127_5139082_3 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.000000000000000000000000000000000000000008192 166.0
YYD1_k127_5139082_4 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000003262 119.0
YYD1_k127_5139082_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000002926 111.0
YYD1_k127_5139082_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000009373 106.0
YYD1_k127_5139082_7 Protein of unknown function (DUF503) K09764 - - 0.000000000004491 70.0
YYD1_k127_5139082_8 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family - - - 0.000000003643 66.0
YYD1_k127_5139082_9 Rieske [2Fe-2S] domain K15060 - - 0.0001686 48.0
YYD1_k127_5185094_0 phosphoribosyltransferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000002637 187.0
YYD1_k127_5185094_1 Histidine kinase - - - 0.000000000000000000000000000000000000000002145 162.0
YYD1_k127_5185094_2 AMP binding - - - 0.000000000000001302 87.0
YYD1_k127_5185094_3 Archease protein family (MTH1598/TM1083) - - - 0.0000000004512 71.0
YYD1_k127_5187899_0 Transglycosylase K21464 - 2.4.1.129,3.4.16.4 1.552e-203 655.0
YYD1_k127_5187899_1 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 499.0
YYD1_k127_5187899_10 Zn-dependent protease - - - 0.000000005078 66.0
YYD1_k127_5187899_11 Heat shock protein K03668 - - 0.00000002165 67.0
YYD1_k127_5187899_2 Putative neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007668 351.0
YYD1_k127_5187899_3 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 342.0
YYD1_k127_5187899_4 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001426 253.0
YYD1_k127_5187899_5 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000478 214.0
YYD1_k127_5187899_6 DinB family - - - 0.0000000000000000000000000000000000000000003018 165.0
YYD1_k127_5187899_7 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000008854 127.0
YYD1_k127_5187899_8 CGNR zinc finger - - - 0.000000000000000000000000005233 122.0
YYD1_k127_5187899_9 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000001979 81.0
YYD1_k127_5193251_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01354 - 3.4.21.83 1.581e-236 770.0
YYD1_k127_5193251_1 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 433.0
YYD1_k127_5193251_2 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 354.0
YYD1_k127_5193251_3 antibiotic biosynthetic process K01434,K07116 - 3.5.1.11,3.5.1.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006197 292.0
YYD1_k127_5211163_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 514.0
YYD1_k127_5211163_1 PHP domain protein K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008792 427.0
YYD1_k127_5211163_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000002098 276.0
YYD1_k127_5215851_0 Multicopper oxidase K04753 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 345.0
YYD1_k127_5215851_1 Bacterial regulatory proteins, tetR family K16137 - - 0.0000000000000000000000000000000000000000000000000000000000000007494 228.0
YYD1_k127_5215851_10 - - - - 0.000000000000009505 83.0
YYD1_k127_5215851_2 Cytochrome c K00376,K02305,K17760 - 1.1.9.1,1.7.2.4 0.0000000000000000000000000000000000000000000000000000000000002316 219.0
YYD1_k127_5215851_3 Cytochrome c K00376,K02305,K17760 - 1.1.9.1,1.7.2.4 0.0000000000000000000000000000000000000000000000000000000009302 226.0
YYD1_k127_5215851_4 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000005912 202.0
YYD1_k127_5215851_6 - - - - 0.000000000000000000000000000000000000000002198 170.0
YYD1_k127_5215851_7 - - - - 0.00000000000000000000000000001564 136.0
YYD1_k127_5215851_8 - - - - 0.0000000000000000000000003276 119.0
YYD1_k127_5215851_9 - - - - 0.0000000000000000005581 94.0
YYD1_k127_522923_0 Protein export membrane protein - - - 0.0 1428.0
YYD1_k127_522923_1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 1.684e-281 875.0
YYD1_k127_522923_10 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000005432 127.0
YYD1_k127_522923_11 Protein of unknown function (DUF2892) - - - 0.000000000000000000007325 99.0
YYD1_k127_522923_12 DNA-binding transcription factor activity K03892 - - 0.000000000000000001023 89.0
YYD1_k127_522923_13 SnoaL-like domain - - - 0.00000000000000004164 95.0
YYD1_k127_522923_2 ThiC-associated domain K03147 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 7.99e-253 786.0
YYD1_k127_522923_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003744 621.0
YYD1_k127_522923_4 Rhodanese Homology Domain K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000545 515.0
YYD1_k127_522923_5 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 318.0
YYD1_k127_522923_6 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001096 271.0
YYD1_k127_522923_7 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000006833 261.0
YYD1_k127_522923_8 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000008519 213.0
YYD1_k127_522923_9 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000000004814 212.0
YYD1_k127_5237201_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 9.838e-199 638.0
YYD1_k127_5237201_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 493.0
YYD1_k127_5237201_2 Domain of unknown function DUF87 K06915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 424.0
YYD1_k127_5237201_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00006371 46.0
YYD1_k127_5272444_0 MatE - - - 3.413e-209 672.0
YYD1_k127_5272444_1 Protein of unknown function (DUF1211) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 292.0
YYD1_k127_5272444_2 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000002671 242.0
YYD1_k127_5272444_3 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000002361 194.0
YYD1_k127_5272444_4 - - - - 0.0000000000000000000000000000000000001002 151.0
YYD1_k127_5272444_5 Putative thioesterase (yiiD_Cterm) - - - 0.0000000000000000000000000000004768 136.0
YYD1_k127_5286953_0 - - - - 0.0 1109.0
YYD1_k127_5286953_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 326.0
YYD1_k127_5286953_2 Methyltransferase domain K15256 - - 0.0000000000000000000000000000000000000000001368 166.0
YYD1_k127_5286953_3 Protein of unknown function (DUF1326) - - - 0.0000000003311 63.0
YYD1_k127_5343869_0 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 372.0
YYD1_k127_5343869_1 Threonine/Serine exporter, ThrE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006996 351.0
YYD1_k127_5343869_2 SNARE associated Golgi protein - - - 0.00000000003518 73.0
YYD1_k127_5389027_0 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 308.0
YYD1_k127_5389027_1 TonB C terminal K03832 - - 0.0000000000000000000000000000000000001281 147.0
YYD1_k127_5389027_2 OmpA family K03640 - - 0.0000000000000000000000000000000001157 145.0
YYD1_k127_5389027_3 Outer membrane lipoprotein - - - 0.000000000000000005196 96.0
YYD1_k127_5393030_0 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009754 467.0
YYD1_k127_5393030_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001083 287.0
YYD1_k127_5393030_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.00000000000000000000000000000391 128.0
YYD1_k127_5393030_3 - - - - 0.000000000000000000000009527 115.0
YYD1_k127_5393030_4 - - - - 0.0000000005182 72.0
YYD1_k127_5423605_0 GMC oxidoreductase - - - 2.102e-279 868.0
YYD1_k127_5423605_1 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 1.551e-205 677.0
YYD1_k127_5423605_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004359 605.0
YYD1_k127_5423605_3 Gluconate 2-dehydrogenase subunit 3 - - - 0.00000000000000000000000000000000000000000000000004689 199.0
YYD1_k127_5423605_4 ABC-type amino acid transport signal transduction systems periplasmic component domain K10001 GO:0003333,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0015711,GO:0015740,GO:0015800,GO:0015807,GO:0015813,GO:0015849,GO:0015893,GO:0016595,GO:0016597,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0034220,GO:0036094,GO:0042221,GO:0042493,GO:0042597,GO:0043167,GO:0043168,GO:0043177,GO:0044464,GO:0046942,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070335,GO:0070778,GO:0071702,GO:0071705,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.000000000000001376 87.0
YYD1_k127_5445115_0 Cupin domain - - - 0.0000000000000000000000000003869 123.0
YYD1_k127_5445115_1 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000001039 117.0
YYD1_k127_5445115_2 Cupin domain - - - 0.00000000000000000000009957 105.0
YYD1_k127_5445115_3 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000003232 72.0
YYD1_k127_5445115_4 HEAT repeat - - - 0.000000001651 66.0
YYD1_k127_5473440_0 TonB dependent receptor - - - 1.816e-238 768.0
YYD1_k127_5473440_1 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 415.0
YYD1_k127_5473440_2 histidine kinase A domain protein K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000004956 246.0
YYD1_k127_5473440_3 - - - - 0.0000000000000000000000000000393 131.0
YYD1_k127_551544_0 Aldehyde dehydrogenase family K22187 - - 3.038e-260 808.0
YYD1_k127_551544_1 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007267 564.0
YYD1_k127_551544_10 RF-1 domain K15034 - - 0.000000000000000000000000002618 116.0
YYD1_k127_551544_11 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.0000000000000000000002696 106.0
YYD1_k127_551544_12 - - - - 0.0000000000000000001352 104.0
YYD1_k127_551544_13 Intracellular proteinase inhibitor - - - 0.0000000397 63.0
YYD1_k127_551544_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 453.0
YYD1_k127_551544_3 Peptidase inhibitor I9 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 397.0
YYD1_k127_551544_4 Homoserine dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 317.0
YYD1_k127_551544_5 VWA domain containing CoxE-like protein K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 331.0
YYD1_k127_551544_6 Stage II sporulation protein K06381 - - 0.000000000000000000000000000000000000000000000000000000008788 217.0
YYD1_k127_551544_7 Domain of unknown function (DUF4105) - - - 0.000000000000000000000000000000000000000000000000000001879 215.0
YYD1_k127_551544_8 Alternative locus ID K06864 - - 0.0000000000000000000000000000000000000000000000000005323 212.0
YYD1_k127_551544_9 Protein of unknown function (DUF520) K09767 - - 0.00000000000000000000000000000000000000000000000007778 182.0
YYD1_k127_5525486_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 437.0
YYD1_k127_5525486_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000897 170.0
YYD1_k127_5525486_2 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000009044 126.0
YYD1_k127_5525486_3 metallopeptidase activity - - - 0.0000000000000000005975 100.0
YYD1_k127_5525564_0 Methylmalonyl-CoA mutase K01848,K11942 - 5.4.99.13,5.4.99.2 1.607e-254 795.0
YYD1_k127_5525564_1 ABC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 390.0
YYD1_k127_5525564_2 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 403.0
YYD1_k127_552606_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 503.0
YYD1_k127_552606_1 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000002826 124.0
YYD1_k127_5534197_0 Bacterial transcriptional activator domain K12132 - 2.7.11.1 8.046e-194 641.0
YYD1_k127_5534197_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 569.0
YYD1_k127_5534197_10 Polymer-forming cytoskeletal - - - 0.00000000007517 72.0
YYD1_k127_5534197_11 Globin - - - 0.00000007122 64.0
YYD1_k127_5534197_12 Glyoxalase-like domain - - - 0.000002147 57.0
YYD1_k127_5534197_2 ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006939 416.0
YYD1_k127_5534197_3 Cellulose biosynthesis protein BcsQ K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004246 361.0
YYD1_k127_5534197_4 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 299.0
YYD1_k127_5534197_5 Branched-chain amino acid transport system / permease component K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001409 305.0
YYD1_k127_5534197_6 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002846 281.0
YYD1_k127_5534197_7 ParB-like nuclease domain K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000104 267.0
YYD1_k127_5534197_8 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001838 250.0
YYD1_k127_5534197_9 Peptidase, M23 - - - 0.000000000000000000005473 108.0
YYD1_k127_5566639_0 antibiotic catabolic process K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004552 430.0
YYD1_k127_5566639_1 Cytochrome C oxidase, cbb3-type, subunit III K00368 - 1.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000006713 270.0
YYD1_k127_5566639_11 UPF0391 membrane protein - - - 0.0000000001598 69.0
YYD1_k127_5566639_12 conserved protein (DUF2249) - - - 0.000000664 62.0
YYD1_k127_5566639_2 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor - - - 0.00000000000000000000000000000000000000000000000000000000001124 230.0
YYD1_k127_5566639_3 Protein of unknown function (DUF664) - - - 0.000000000000000000000000000000000000000000000000001968 189.0
YYD1_k127_5566639_4 redox-sensitive transcriptional activator SoxR K13639 - - 0.000000000000000000000000000000000000000000000000002785 186.0
YYD1_k127_5566639_5 Cupin domain - - - 0.000000000000000000000000000000000000000000003408 181.0
YYD1_k127_5566639_6 - - - - 0.000000000000000000000000000000000005078 143.0
YYD1_k127_5566639_7 Transcriptional regulator - - - 0.00000000000000000000000000001026 127.0
YYD1_k127_5566639_8 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.000000000000000004167 91.0
YYD1_k127_5566639_9 Tetratricopeptide repeat - - - 0.00000000000003592 84.0
YYD1_k127_5591549_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 2.572e-237 748.0
YYD1_k127_5591549_1 Telomere recombination K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006137 577.0
YYD1_k127_5591549_2 small subunit K06282 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 423.0
YYD1_k127_5591549_3 COG0378 Ni2 -binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000387 237.0
YYD1_k127_5591549_4 respiratory electron transport chain K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.000000000000000000000000000000000000000000000000000002086 202.0
YYD1_k127_5591549_5 PFAM peptidase M52 hydrogen uptake protein K03605 - - 0.000000000000000000000000000000002825 138.0
YYD1_k127_5591549_6 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000002885 89.0
YYD1_k127_5600211_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 467.0
YYD1_k127_5600211_1 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 392.0
YYD1_k127_5600211_2 Pyridine nucleotide-disulphide oxidoreductase K21567 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004194 357.0
YYD1_k127_5600211_3 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000001326 241.0
YYD1_k127_5600211_4 Diacylglycerol kinase catalytic domain - - - 0.000000000000000000000000000000000003927 159.0
YYD1_k127_5600211_5 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000005577 83.0
YYD1_k127_5600211_6 Glycosyltransferase family 87 K13671 - - 0.0000005376 62.0
YYD1_k127_5608013_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1610.0
YYD1_k127_5608013_1 UDP binding domain K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003355 567.0
YYD1_k127_5608013_2 UDP binding domain K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008133 543.0
YYD1_k127_5608013_3 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 450.0
YYD1_k127_5608013_4 O-acyltransferase activity K13018 - 2.3.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007923 270.0
YYD1_k127_5608013_5 RmlD substrate binding domain K15856 - 1.1.1.281 0.0000000000000000000000000000000000000000000001692 184.0
YYD1_k127_5608013_6 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000003536 166.0
YYD1_k127_5608013_7 PFAM NAD dependent epimerase dehydratase family K08679 - 5.1.3.6 0.00000000000002126 81.0
YYD1_k127_5612112_0 Domain of unknown function (DUF4388) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 449.0
YYD1_k127_5612112_1 Bacterial dnaA protein K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000409 349.0
YYD1_k127_5612112_10 Two component signalling adaptor domain K03408 - - 0.0000000000000004953 91.0
YYD1_k127_5612112_11 Two component signalling adaptor domain K03408 - - 0.0001769 53.0
YYD1_k127_5612112_2 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007798 351.0
YYD1_k127_5612112_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 327.0
YYD1_k127_5612112_4 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 293.0
YYD1_k127_5612112_5 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006323 261.0
YYD1_k127_5612112_6 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000001373 244.0
YYD1_k127_5612112_7 - - - - 0.00000000000000000000000000000002677 141.0
YYD1_k127_5612112_8 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.00000000000000000000000000002515 131.0
YYD1_k127_5612112_9 Tetratricopeptide repeat - - - 0.000000000000000000000001802 120.0
YYD1_k127_568904_0 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009747 351.0
YYD1_k127_568904_1 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000001301 188.0
YYD1_k127_568904_2 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03770 - 5.2.1.8 0.0000000000000000000000000125 126.0
YYD1_k127_568904_3 Tetratricopeptide repeat - - - 0.00000000000000000003191 105.0
YYD1_k127_5717574_0 esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 375.0
YYD1_k127_5717574_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000363 197.0
YYD1_k127_5717574_2 PHB/PHA accumulation regulator DNA-binding domain - - - 0.0000000000000001091 90.0
YYD1_k127_5717574_3 Poly(hydroxyalcanoate) granule associated protein (phasin) - - - 0.00000000003517 74.0
YYD1_k127_5742381_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 606.0
YYD1_k127_5742381_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 395.0
YYD1_k127_5742381_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 372.0
YYD1_k127_5742381_3 tRNA synthetases class I (E and Q), catalytic domain K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005205 346.0
YYD1_k127_5742381_4 protein conserved in bacteria - - - 0.000000000000006916 89.0
YYD1_k127_5750349_0 NAD(P)H-binding - - - 0.000000000000000000000000000000000000000000004389 177.0
YYD1_k127_5750349_1 DinB family - - - 0.000000000000000000000000001283 121.0
YYD1_k127_5750349_4 Transcription factor zinc-finger - - - 0.000005703 54.0
YYD1_k127_5753715_0 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 542.0
YYD1_k127_5753715_1 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 382.0
YYD1_k127_5753715_2 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 383.0
YYD1_k127_5753715_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 298.0
YYD1_k127_5753715_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001881 255.0
YYD1_k127_5753715_5 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000006596 226.0
YYD1_k127_5753715_6 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000002034 193.0
YYD1_k127_5753715_7 Transcription factor zinc-finger K09981 - - 0.0000000000000000004134 90.0
YYD1_k127_5753715_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000001727 95.0
YYD1_k127_5772649_0 glutamine synthetase K01915 - 6.3.1.2 7.438e-268 843.0
YYD1_k127_5772649_1 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 356.0
YYD1_k127_5772649_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 306.0
YYD1_k127_5772649_3 CYTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003027 276.0
YYD1_k127_5772649_4 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000001087 261.0
YYD1_k127_5772649_5 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000209 117.0
YYD1_k127_5772649_6 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000006093 110.0
YYD1_k127_5772649_7 Alpha beta hydrolase K00433 - 1.11.1.10 0.000000000000000000417 91.0
YYD1_k127_5772649_9 Protein conserved in bacteria - - - 0.0000000000001232 73.0
YYD1_k127_5829104_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009446 484.0
YYD1_k127_5829104_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 486.0
YYD1_k127_5829104_2 lytic transglycosylase activity K08309 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009274,GO:0016740,GO:0016757,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000007314 161.0
YYD1_k127_5836941_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 4.666e-195 629.0
YYD1_k127_5836941_1 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 322.0
YYD1_k127_5836941_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006808 326.0
YYD1_k127_5836941_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 312.0
YYD1_k127_5836941_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000002017 257.0
YYD1_k127_5836941_5 Nicastrin K01301 - 3.4.17.21 0.00000000000000000000000000000000000000000000000000000000000000000001245 244.0
YYD1_k127_5836941_6 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000008105 248.0
YYD1_k127_5836941_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000009496 134.0
YYD1_k127_5859701_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 437.0
YYD1_k127_5859701_1 2 iron, 2 sulfur cluster binding K13643 - - 0.000000000000000000000000005763 117.0
YYD1_k127_5882417_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 496.0
YYD1_k127_5882417_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 420.0
YYD1_k127_5882417_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009449 340.0
YYD1_k127_5882417_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002345 287.0
YYD1_k127_5882417_4 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.000000000000000000000002513 109.0
YYD1_k127_58904_0 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 450.0
YYD1_k127_58904_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002696 255.0
YYD1_k127_58904_2 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000004082 151.0
YYD1_k127_58904_3 D-aminopeptidase K16203 - - 0.000000000000000000000000000000000008582 148.0
YYD1_k127_58904_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000002347 111.0
YYD1_k127_58904_5 - - - - 0.000000000000000002031 93.0
YYD1_k127_58904_6 Amino-transferase class IV K02619,K03342 - 2.6.1.85,4.1.3.38 0.000000000000000028 91.0
YYD1_k127_5908559_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009939 516.0
YYD1_k127_5908559_1 Glycosyl transferase 4-like K00754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007482 433.0
YYD1_k127_5908559_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000005464 263.0
YYD1_k127_5908559_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000001489 240.0
YYD1_k127_5908559_4 Oxygen tolerance - - - 0.0000000000000000000000000000000000000000002567 182.0
YYD1_k127_5908559_5 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000005382 101.0
YYD1_k127_5908559_6 von Willebrand factor type A domain K07114 - - 0.00001608 50.0
YYD1_k127_5934092_0 ATP synthase alpha/beta family, beta-barrel domain K02118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 459.0
YYD1_k127_5934092_1 KR domain - - - 0.000000000000000000000000000000000000000118 169.0
YYD1_k127_5934092_2 Protein of unknown function, DUF481 K07283 - - 0.0000000000000000000000000000001343 136.0
YYD1_k127_5934092_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.0000000000000000000002596 105.0
YYD1_k127_5934092_4 Copper binding proteins, plastocyanin/azurin family - - - 0.000006902 57.0
YYD1_k127_5953321_0 COG0433 Predicted ATPase K06915 - - 8.41e-238 751.0
YYD1_k127_5953321_1 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 348.0
YYD1_k127_5953321_2 AAA domain K03546 - - 0.000000000000000000000000000000000000000000000000000000000000000008203 232.0
YYD1_k127_5953321_3 COGs COG2380 conserved - - - 0.0000000000000000000000000000000000000054 158.0
YYD1_k127_5978614_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 1.506e-200 640.0
YYD1_k127_5978614_1 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 417.0
YYD1_k127_5978614_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004029 382.0
YYD1_k127_5978614_3 MOFRL family K11529 - 2.7.1.165 0.00000000000000000000000000000000003956 147.0
YYD1_k127_5978614_4 Helix-turn-helix domain K07729 - - 0.0000000000000000001971 88.0
YYD1_k127_5978614_5 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02768 - 2.7.1.202 0.000000000000000001665 91.0
YYD1_k127_6005891_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 6.026e-218 693.0
YYD1_k127_6005891_1 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000004906 158.0
YYD1_k127_6005891_2 PFAM Diacylglycerol kinase, catalytic - - - 0.0000007935 58.0
YYD1_k127_6013919_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 600.0
YYD1_k127_6013919_1 SnoaL-like polyketide cyclase - - - 0.0000000000000000000000000414 113.0
YYD1_k127_6013919_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000002206 93.0
YYD1_k127_6016353_0 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009245 272.0
YYD1_k127_6016353_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000001085 239.0
YYD1_k127_6016353_2 nuclear chromosome segregation - - - 0.0000000000000000000000000002184 128.0
YYD1_k127_6070707_0 cellulase activity - - - 1.209e-195 638.0
YYD1_k127_6070707_1 - - - - 0.000000000000000000000000185 114.0
YYD1_k127_6070707_2 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00362,K05297 - 1.18.1.1,1.7.1.15 0.0000000000000000000001564 113.0
YYD1_k127_6081028_0 B12 binding domain K00548 - 2.1.1.13 0.0 1517.0
YYD1_k127_6081028_1 Fatty acid desaturase K03921 - 1.14.19.11,1.14.19.2,1.14.19.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007241 413.0
YYD1_k127_6081028_2 C4-dicarboxylate anaerobic carrier - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 405.0
YYD1_k127_6081028_3 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 310.0
YYD1_k127_6081028_4 YGGT family K02221 - - 0.000000000000000000000000000005524 131.0
YYD1_k127_6081028_5 Belongs to the UPF0235 family K09131 - - 0.000000000000000000000344 108.0
YYD1_k127_6081028_6 FR47-like protein K03789 - 2.3.1.128 0.0002641 50.0
YYD1_k127_6089505_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0000502,GO:0002020,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009376,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019899,GO:0019904,GO:0030163,GO:0030164,GO:0030312,GO:0030554,GO:0031333,GO:0031597,GO:0032271,GO:0032272,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043254,GO:0043335,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051301,GO:0051704,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097718,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000513 546.0
YYD1_k127_6089505_1 - K12065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 373.0
YYD1_k127_6089505_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007717 355.0
YYD1_k127_6089505_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000718 275.0
YYD1_k127_6089505_4 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000004837 160.0
YYD1_k127_6089505_5 FMN_bind - - - 0.0000000000000000000005596 103.0
YYD1_k127_6089505_6 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000009591 96.0
YYD1_k127_6089505_7 - - - - 0.0000000000000000003127 101.0
YYD1_k127_6099636_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 4.091e-209 674.0
YYD1_k127_6099636_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000007877 241.0
YYD1_k127_6099636_2 PFAM ABC transporter related K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000008262 222.0
YYD1_k127_6099636_3 PFAM Bacterial regulatory proteins, tetR family K09017,K22295 - - 0.000000000000000000000000000000000005541 145.0
YYD1_k127_6101443_0 Zn_pept - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 457.0
YYD1_k127_6101443_1 Amino acid permease K03756,K03759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 428.0
YYD1_k127_6101443_2 Protein of unknown function (DUF2950) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 357.0
YYD1_k127_6101443_3 LysE type translocator - - - 0.000000000000000000000000000000000000000000000001145 181.0
YYD1_k127_6112712_0 Pfam:DUF955 K07110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 494.0
YYD1_k127_6112712_1 3-methyl-2-oxobutanoate hydroxymethyltransferase activity K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 313.0
YYD1_k127_6112712_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003199 279.0
YYD1_k127_6112712_3 HD superfamily hydrolase involved in NAD metabolism K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000003207 164.0
YYD1_k127_6112712_4 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000006161 160.0
YYD1_k127_6112712_5 HD superfamily hydrolase involved in NAD metabolism K00950 - 2.7.6.3 0.0000000000000000000000000000000001135 142.0
YYD1_k127_6112712_6 chemotaxis K03406 - - 0.000000000000000000003436 102.0
YYD1_k127_6112712_7 LytR cell envelope-related transcriptional attenuator - - - 0.0000000001199 74.0
YYD1_k127_6122729_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005118 588.0
YYD1_k127_6122729_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007156 496.0
YYD1_k127_6122729_2 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 367.0
YYD1_k127_6122729_3 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003087 347.0
YYD1_k127_6122729_4 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 306.0
YYD1_k127_6122729_5 Lumazine binding domain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000001519 223.0
YYD1_k127_6122729_6 - - - - 0.000000000000000000003555 106.0
YYD1_k127_6122729_7 Regulatory protein, FmdB family - - - 0.00000000000000000002015 94.0
YYD1_k127_6122729_8 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000002886 91.0
YYD1_k127_6122729_9 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000398 62.0
YYD1_k127_6128381_0 Cytochrome C and Quinol oxidase polypeptide I K02274 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 496.0
YYD1_k127_6128381_1 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 376.0
YYD1_k127_6128381_2 E1-E2 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009368 278.0
YYD1_k127_6128381_3 PspA/IM30 family K03969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002208 274.0
YYD1_k127_6128381_4 E1-E2 ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003624 269.0
YYD1_k127_6128381_5 Serine dehydratase alpha chain K01752 - 4.3.1.17 0.000000000000000000000000000000000000000000000001205 175.0
YYD1_k127_6128381_6 Cytochrome c oxidase, subunit II K02275 - 1.9.3.1 0.0000000000000000000000000000004648 132.0
YYD1_k127_6128381_7 - - - - 0.0000000000000004786 89.0
YYD1_k127_6143086_0 PFAM Cys Met metabolism pyridoxal-phosphate-dependent K01761 - 4.4.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 524.0
YYD1_k127_6143086_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 413.0
YYD1_k127_6143086_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 323.0
YYD1_k127_6143086_3 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000185 265.0
YYD1_k127_6143086_4 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000007503 245.0
YYD1_k127_6143086_5 - - - - 0.0000000000000000002572 96.0
YYD1_k127_6143086_6 Zincin-like metallopeptidase - - - 0.00000000000004169 86.0
YYD1_k127_6143086_7 Mycolic acid cyclopropane synthetase - - - 0.0000002152 61.0
YYD1_k127_6145343_0 membrane organization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 437.0
YYD1_k127_6145343_1 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 406.0
YYD1_k127_6145343_2 metallophosphoesterase - - - 0.00000000000000000000000000000000000000000000000001322 194.0
YYD1_k127_6145343_3 SURF1 family K14998 - - 0.00000000000000000000000000000000897 139.0
YYD1_k127_6145343_4 SdiA-regulated - - - 0.0000000000000000005317 99.0
YYD1_k127_6147658_0 B3/4 domain K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 632.0
YYD1_k127_6147658_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 608.0
YYD1_k127_6147658_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008165 359.0
YYD1_k127_6147658_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 318.0
YYD1_k127_6147658_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000678 286.0
YYD1_k127_6147658_5 YjbR - - - 0.000000000000006787 77.0
YYD1_k127_6147658_6 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000002863 65.0
YYD1_k127_6166988_0 Enoyl-CoA hydratase/isomerase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 1.764e-213 683.0
YYD1_k127_6166988_1 Peptidase family M28 - - - 1.141e-195 631.0
YYD1_k127_6166988_10 DoxX K15977 - - 0.0000000000000000000000000000000000003343 146.0
YYD1_k127_6166988_11 light absorption - - - 0.0000000000000000000000000000000000004422 143.0
YYD1_k127_6166988_12 Tellurite resistance protein TehB - - - 0.000000000000000000000001463 112.0
YYD1_k127_6166988_13 - - - - 0.000000001424 70.0
YYD1_k127_6166988_2 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 549.0
YYD1_k127_6166988_3 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006822 478.0
YYD1_k127_6166988_4 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 351.0
YYD1_k127_6166988_5 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004547 276.0
YYD1_k127_6166988_6 2-oxoglutarate dehydrogenase C-terminal K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000002836 287.0
YYD1_k127_6166988_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000009494 261.0
YYD1_k127_6166988_8 OmpA family - - - 0.000000000000000000000000000000000000000000000000002443 190.0
YYD1_k127_6166988_9 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000002711 148.0
YYD1_k127_6186127_0 Cys/Met metabolism PLP-dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007173 458.0
YYD1_k127_6186127_1 ROK family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 425.0
YYD1_k127_6186127_2 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 340.0
YYD1_k127_6186127_3 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 329.0
YYD1_k127_6186127_4 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003461 258.0
YYD1_k127_6186127_5 - - - - 0.00000000000000000001716 106.0
YYD1_k127_6199476_0 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005562 307.0
YYD1_k127_6229181_0 HELICc2 K03722 - 3.6.4.12 3.28e-284 896.0
YYD1_k127_6229181_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 522.0
YYD1_k127_6229181_2 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 423.0
YYD1_k127_6229181_3 Aminotransferase class I and II K10206 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004163 409.0
YYD1_k127_6229344_0 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000003229 187.0
YYD1_k127_6229344_1 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000000007789 109.0
YYD1_k127_6229344_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000003124 96.0
YYD1_k127_6229344_4 - - - - 0.0000000000000000004188 89.0
YYD1_k127_6252141_0 Beta-eliminating lyase K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006968 572.0
YYD1_k127_6252141_1 Zinc-binding dehydrogenase K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008957 397.0
YYD1_k127_6252141_2 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.00000000000000000000000000000000000000000000000201 188.0
YYD1_k127_6260834_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 475.0
YYD1_k127_6260834_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000006326 194.0
YYD1_k127_6285263_0 PFAM AMP-dependent synthetase and ligase K04110 - 6.2.1.25 5.189e-224 720.0
YYD1_k127_6285263_1 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 457.0
YYD1_k127_6285263_2 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 362.0
YYD1_k127_6285263_3 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000919 302.0
YYD1_k127_6285263_4 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002989 292.0
YYD1_k127_6291839_0 cobalamin-transporting ATPase activity K02014,K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 426.0
YYD1_k127_6291839_1 ABC transporter K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000006466 233.0
YYD1_k127_6291839_2 FecCD transport family K02015 - - 0.00000000000000000000000000000000000000000000000000000000001423 228.0
YYD1_k127_6291839_3 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000000000000001542 177.0
YYD1_k127_6291839_4 Periplasmic binding protein K02016,K06858 - - 0.000000000000000000000000000009593 136.0
YYD1_k127_6291839_5 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0016740,GO:0016765,GO:0019899,GO:0030312,GO:0035375,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.5.1.6 0.0000000000000000000000001195 108.0
YYD1_k127_6291839_6 Cytochrome c - - - 0.0000000000000000000003151 110.0
YYD1_k127_6295291_0 PFAM ABC-3 protein K11709 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003589 424.0
YYD1_k127_6295291_1 PFAM ABC transporter related K11710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000679 365.0
YYD1_k127_6295291_2 ABC 3 transport family K11708 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0042221,GO:0044464,GO:0050896,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 368.0
YYD1_k127_6295291_3 Belongs to the bacterial solute-binding protein 9 family K09818,K11707 - - 0.000000000000000000000000000000000000000000000000000000001322 203.0
YYD1_k127_629588_0 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 383.0
YYD1_k127_629588_1 FAD dependent oxidoreductase K00285,K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19,1.4.5.1 0.000000000000000000000000000000000000000000000000000000005175 218.0
YYD1_k127_629588_2 Glycosyl transferase family 2 K08301 - - 0.0000000000000000000000000000000000000000000000000000001155 203.0
YYD1_k127_629588_3 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000004337 164.0
YYD1_k127_629588_4 glycosyl transferase group 1 - - - 0.000000000000000001959 91.0
YYD1_k127_629588_5 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000001873 93.0
YYD1_k127_629588_6 - - - - 0.0000004763 53.0
YYD1_k127_643304_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 4.008e-291 926.0
YYD1_k127_643304_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 2.611e-206 662.0
YYD1_k127_643304_2 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 517.0
YYD1_k127_643304_3 Biotin biosynthesis protein BioY of Proteobacteria UniRef RepID B8F6V1_HAEPS K03523 - - 0.0000000000000000000000002146 122.0
YYD1_k127_6466921_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 6.873e-198 629.0
YYD1_k127_6466921_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000001415 106.0
YYD1_k127_6466921_2 - - - - 0.00000000000000000001856 107.0
YYD1_k127_6466921_3 TIGRFAM 6-pyruvoyl tetrahydropterin synthase QueD family protein K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000645 92.0
YYD1_k127_6466921_4 - - - - 0.0000000000000007482 83.0
YYD1_k127_6483230_0 ErfK YbiS YcfS YnhG family protein K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 391.0
YYD1_k127_6483230_1 thiolester hydrolase activity K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006209 266.0
YYD1_k127_6483230_2 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000002096 177.0
YYD1_k127_6483230_3 Thioredoxin-like domain K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000001843 169.0
YYD1_k127_6483230_4 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000001333 167.0
YYD1_k127_6483230_5 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000000002482 126.0
YYD1_k127_6483230_7 SnoaL-like domain - - - 0.000000008711 67.0
YYD1_k127_6483230_8 Outer membrane protein beta-barrel domain - - - 0.00007821 53.0
YYD1_k127_6484071_0 Peptidase family M3 K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 392.0
YYD1_k127_6484071_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005805 301.0
YYD1_k127_6484071_2 Cold shock protein domain K03704 - - 0.0000000000000000000000000000435 120.0
YYD1_k127_6484071_3 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.00000000000000000000002097 109.0
YYD1_k127_6484071_4 CGNR zinc finger - - - 0.00000223 53.0
YYD1_k127_6487837_0 Peptidase family M1 domain - - - 7.878e-248 780.0
YYD1_k127_6487837_1 DEAD-like helicases superfamily K11927 - 3.6.4.13 4.018e-204 645.0
YYD1_k127_6487837_10 - - - - 0.0000001643 64.0
YYD1_k127_6487837_2 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000001147 262.0
YYD1_k127_6487837_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000008697 192.0
YYD1_k127_6487837_4 serine-type peptidase activity K01278 - 3.4.14.5 0.000000000000000000000000000000000000000006938 168.0
YYD1_k127_6487837_5 - - - - 0.000000000000000000000001124 107.0
YYD1_k127_6487837_6 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000000000000000000000224 115.0
YYD1_k127_6487837_7 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000007175 110.0
YYD1_k127_6487837_8 Membrane - - - 0.000000000002235 74.0
YYD1_k127_651626_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 426.0
YYD1_k127_651626_1 protein secretion K21449 - - 0.00000000000000002591 88.0
YYD1_k127_651626_2 Elongation factor SelB, winged helix K03833 - - 0.0000000000007919 78.0
YYD1_k127_651627_0 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 451.0
YYD1_k127_651627_1 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006257 291.0
YYD1_k127_651627_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.000000000000000000000000000000000000000000000000000002553 195.0
YYD1_k127_651627_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000002911 183.0
YYD1_k127_651627_4 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000001053 192.0
YYD1_k127_651627_5 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000921 111.0
YYD1_k127_6533253_0 lysine 2,3-aminomutase K01843 - 5.4.3.2 1.74e-196 619.0
YYD1_k127_6533253_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 574.0
YYD1_k127_6533253_2 endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000000000000000008865 204.0
YYD1_k127_6533253_3 lysine 2,3-aminomutase K01843 - 5.4.3.2 0.00000000000000000000007326 100.0
YYD1_k127_6553681_0 cellulose binding - - - 4.467e-220 688.0
YYD1_k127_6553681_1 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000000000000000000000000000000000000000000002748 204.0
YYD1_k127_6553681_2 RNA signal recognition particle 4.5S RNA - - - 0.0000000000000000000000000000000000000000000000009667 176.0
YYD1_k127_6553681_3 DinB family - - - 0.000000000000000000000000000000000000000000000001893 179.0
YYD1_k127_6553681_4 Bacterial transcriptional repressor C-terminal - - - 0.000000000000000000000000000000000000000000001388 173.0
YYD1_k127_6553681_5 DinB family - - - 0.000000000000000000000000000000000005866 152.0
YYD1_k127_6553681_6 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.00000000000000000000000000000004439 139.0
YYD1_k127_6553681_7 COG0262 Dihydrofolate reductase - - - 0.00000000000000000000001375 108.0
YYD1_k127_6563460_0 Drug exporters of the RND superfamily K06994,K07003,K20466,K20470 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0009273,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0033036,GO:0040007,GO:0042546,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071554,GO:0071702,GO:0071766,GO:0071840,GO:0071944,GO:1901264 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 418.0
YYD1_k127_6563460_1 3'-5' exonuclease K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 374.0
YYD1_k127_6563460_2 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005379 260.0
YYD1_k127_6563460_3 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000001146 225.0
YYD1_k127_6563460_4 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000002568 214.0
YYD1_k127_6563460_5 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000003037 160.0
YYD1_k127_6563460_6 Iron-sulfur cluster assembly protein - - - 0.00000000000000000000000000000009081 128.0
YYD1_k127_6563460_7 Matrixin - - - 0.00000000000000000001272 101.0
YYD1_k127_6563460_8 Thioesterase K07107,K12500 - - 0.0000000000000000009756 100.0
YYD1_k127_6565435_0 tRNA synthetases class I (M) K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 540.0
YYD1_k127_6565435_1 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000005153 201.0
YYD1_k127_6565435_2 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000001812 177.0
YYD1_k127_663135_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 9.628e-203 639.0
YYD1_k127_663135_1 secondary active sulfate transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003667 338.0
YYD1_k127_663135_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005993 290.0
YYD1_k127_663135_3 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K00950,K01633 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042221,GO:0042364,GO:0042398,GO:0042493,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046655,GO:0046656,GO:0050896,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.13.11.81,2.5.1.15,2.7.6.3,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000000000000000000000000000000000000004444 263.0
YYD1_k127_663135_4 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000009966 213.0
YYD1_k127_663135_5 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000007877 93.0
YYD1_k127_668147_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008431 473.0
YYD1_k127_668147_1 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 410.0
YYD1_k127_668147_2 Competence protein K02238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 311.0
YYD1_k127_6730310_0 Sulfatase K01138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 433.0
YYD1_k127_6730310_1 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 310.0
YYD1_k127_6730310_10 Low affinity iron permease - - - 0.000000000000000000000000000000000000000000003789 178.0
YYD1_k127_6730310_11 Putative glycolipid-binding K09957 - - 0.000000000000000000000000000000000000000000005438 177.0
YYD1_k127_6730310_12 SnoaL-like domain - - - 0.000000000000000000000000000000000000000001022 161.0
YYD1_k127_6730310_13 Protein of unknown function (DUF3224) - - - 0.0000000000000000000000000000000000000002437 162.0
YYD1_k127_6730310_14 Domain of unknown function (DUF4260) - - - 0.0000000000000000000000000000000000000003712 153.0
YYD1_k127_6730310_15 -acetyltransferase - - - 0.00000000000000000000000000000000000000127 156.0
YYD1_k127_6730310_16 - - - - 0.000000000000000000000000000000000009865 144.0
YYD1_k127_6730310_17 - - - - 0.0000000000000000000000000000002801 139.0
YYD1_k127_6730310_18 O-methyltransferase - - - 0.000000000000000007295 84.0
YYD1_k127_6730310_19 Domain of unknown function (DUF4442) - - - 0.00000000000000117 91.0
YYD1_k127_6730310_2 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000917 243.0
YYD1_k127_6730310_21 - - - - 0.0001412 49.0
YYD1_k127_6730310_3 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000008077 241.0
YYD1_k127_6730310_4 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000004984 248.0
YYD1_k127_6730310_5 HD domain K07023 - - 0.000000000000000000000000000000000000000000000000000000000000004285 224.0
YYD1_k127_6730310_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000002626 216.0
YYD1_k127_6730310_7 Appr-1'-p processing enzyme - - - 0.00000000000000000000000000000000000000000000000000000001352 210.0
YYD1_k127_6730310_8 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000003014 193.0
YYD1_k127_6730310_9 acetyltransferase K22441 - 2.3.1.57 0.00000000000000000000000000000000000000000000008237 173.0
YYD1_k127_673452_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1148.0
YYD1_k127_673452_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 497.0
YYD1_k127_673452_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 417.0
YYD1_k127_673452_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 325.0
YYD1_k127_673452_4 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001243 249.0
YYD1_k127_673452_5 Peptidase family S41 - - - 0.0000000000000000000000000000000000000000001008 178.0
YYD1_k127_673452_6 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000004138 111.0
YYD1_k127_673452_7 NAD(P) transhydrogenase, alpha subunit K00324 - 1.6.1.2 0.000000000000000000000001073 118.0
YYD1_k127_673452_8 - - - - 0.000000000000000000000416 110.0
YYD1_k127_673452_9 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.0000000000001942 80.0
YYD1_k127_6740842_0 LVIVD repeat - - - 9.145e-256 820.0
YYD1_k127_6740842_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000512 408.0
YYD1_k127_6740842_2 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 385.0
YYD1_k127_6740842_3 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 358.0
YYD1_k127_6740842_4 haloacid dehalogenase-like hydrolase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000008443 186.0
YYD1_k127_6772349_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000839 475.0
YYD1_k127_6772349_1 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00499,K16319 - 1.14.12.1,1.14.15.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009167 372.0
YYD1_k127_6772349_2 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 346.0
YYD1_k127_6772349_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 313.0
YYD1_k127_6772349_4 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000005503 219.0
YYD1_k127_6779603_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 335.0
YYD1_k127_6779603_1 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 310.0
YYD1_k127_6779603_2 Stage II sporulation protein K06381 - - 0.00000000000000000000000000000000000000000000000000000000000001031 231.0
YYD1_k127_6779603_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000008888 78.0
YYD1_k127_6781258_0 Fibronectin type 3 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002818 378.0
YYD1_k127_6781258_1 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000001959 239.0
YYD1_k127_6781258_2 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000001841 137.0
YYD1_k127_6781258_3 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000006457 124.0
YYD1_k127_6781258_4 Bacterial Ig-like domain 2 - - - 0.000000004244 64.0
YYD1_k127_6781258_5 - - - - 0.000000087 64.0
YYD1_k127_6781258_6 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0000006172 60.0
YYD1_k127_6794401_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 9.086e-263 836.0
YYD1_k127_6794401_1 DAHP synthetase I family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 323.0
YYD1_k127_6794401_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002181 308.0
YYD1_k127_6794401_3 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000005753 213.0
YYD1_k127_6794401_4 Anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000556 193.0
YYD1_k127_6794401_5 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.000000000000000000000000000000361 138.0
YYD1_k127_6801763_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 445.0
YYD1_k127_6801763_1 4Fe-4S binding domain K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 372.0
YYD1_k127_6801763_2 Nicastrin K01301 - 3.4.17.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 334.0
YYD1_k127_6801763_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005764 297.0
YYD1_k127_6801763_4 LVIVD repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000596 255.0
YYD1_k127_6821757_0 FAD dependent oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 310.0
YYD1_k127_6821757_1 Belongs to the xylose isomerase family K01805 - 5.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 288.0
YYD1_k127_6821757_2 Glycosyltransferase Family 4 K14335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000491 297.0
YYD1_k127_6821757_3 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000004899 263.0
YYD1_k127_6821757_4 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000001554 215.0
YYD1_k127_6821757_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000004365 201.0
YYD1_k127_6821757_6 - - - - 0.00000000000000000000000000000000000000000000000000009095 212.0
YYD1_k127_6821757_7 Short-chain dehydrogenase reductase sdr - - - 0.0000000000000000000000000001678 124.0
YYD1_k127_6821757_8 - - - - 0.00000000000000002313 89.0
YYD1_k127_6821757_9 Cupin 2, conserved barrel domain protein - - - 0.000000000000001407 85.0
YYD1_k127_6849926_0 Na dependent nucleoside transporter K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 432.0
YYD1_k127_6849926_1 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005858 329.0
YYD1_k127_6849926_2 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004004 299.0
YYD1_k127_6849926_3 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000001492 256.0
YYD1_k127_6849926_4 - - - - 0.000000000001708 70.0
YYD1_k127_6851106_0 O-acyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 369.0
YYD1_k127_6851106_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000007424 56.0
YYD1_k127_6851106_2 GAF domain - - - 0.00007961 55.0
YYD1_k127_689475_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 442.0
YYD1_k127_689475_1 phosphorelay signal transduction system K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 406.0
YYD1_k127_689475_2 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 387.0
YYD1_k127_689475_3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 317.0
YYD1_k127_689475_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001657 289.0
YYD1_k127_689475_5 Domain of unknown function (DUF4403) - - - 0.000000000000000000000000000000000000000000000000000000000000000005399 244.0
YYD1_k127_689475_6 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000001571 194.0
YYD1_k127_689475_8 peptidyl-tyrosine sulfation - - - 0.0000000000000000000003538 107.0
YYD1_k127_689475_9 - - - - 0.0003295 51.0
YYD1_k127_6907928_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 2.229e-218 690.0
YYD1_k127_6907928_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 436.0
YYD1_k127_6907928_2 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001266 293.0
YYD1_k127_6907928_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K19340 - - 0.00000000000000000000000000000000000000000000000000000000000000000006549 254.0
YYD1_k127_6907928_4 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000003293 228.0
YYD1_k127_6907928_5 tungstate binding K15495 - - 0.000000000000000000000000000000000000000000000000001929 195.0
YYD1_k127_6919019_0 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 413.0
YYD1_k127_6919019_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006382 299.0
YYD1_k127_6919019_2 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.00003401 48.0
YYD1_k127_694125_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 2.882e-314 974.0
YYD1_k127_694125_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000000000000002936 195.0
YYD1_k127_694125_2 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000007131 175.0
YYD1_k127_694125_3 EVE domain - - - 0.000000000000000000000000000000000000007351 151.0
YYD1_k127_694125_4 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925,K07102 - 2.7.1.221 0.0000000000000000000000000007772 117.0
YYD1_k127_694125_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000008426 103.0
YYD1_k127_694125_6 protein containing LysM domain - - - 0.00000000000000111 90.0
YYD1_k127_694125_7 COG1214 Inactive homolog of metal-dependent proteases K01409,K14742 - 2.3.1.234 0.0000000000003437 81.0
YYD1_k127_702782_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1065.0
YYD1_k127_702782_1 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 571.0
YYD1_k127_702782_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 533.0
YYD1_k127_702782_3 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 421.0
YYD1_k127_702782_4 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000000000003266 203.0
YYD1_k127_702782_5 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.0000000000000000000000000000000000008373 142.0
YYD1_k127_702782_6 - - - - 0.0000000000000381 76.0
YYD1_k127_758176_0 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 317.0
YYD1_k127_758176_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 319.0
YYD1_k127_758176_2 4Fe-4S single cluster domain K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001291 273.0
YYD1_k127_758176_3 glycosyl transferase group 1 K13668 - 2.4.1.346 0.0000000000000000000000000000000000000000000000000001343 198.0
YYD1_k127_758176_4 Bacterial protein of unknown function (DUF853) K06915 - - 0.00000000000000000000000000000001472 143.0
YYD1_k127_758176_5 Putative cyclase - - - 0.00000004274 61.0
YYD1_k127_771779_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000002628 259.0
YYD1_k127_771779_2 - - - - 0.00000004278 58.0
YYD1_k127_77346_0 COG0659 Sulfate permease and related transporters (MFS superfamily) K01673,K03321 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 545.0
YYD1_k127_77346_1 Belongs to the peptidase S1B family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 342.0
YYD1_k127_77346_2 - - - - 0.000000000000000000000000000000000003044 151.0
YYD1_k127_77346_3 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000000000000000000002385 128.0
YYD1_k127_77346_4 - - - - 0.000000000000000000000000000183 128.0
YYD1_k127_77346_5 DinB superfamily - - - 0.000000000000001665 86.0
YYD1_k127_778463_0 - - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008757,GO:0016278,GO:0016740,GO:0016741,GO:0032259 - 1.458e-284 947.0
YYD1_k127_778463_1 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 601.0
YYD1_k127_778463_2 PFAM amino acid permease-associated region K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 414.0
YYD1_k127_778463_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 344.0
YYD1_k127_778463_4 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001393 297.0
YYD1_k127_778463_5 Predicted permease YjgP/YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002918 274.0
YYD1_k127_778463_6 Glutamine cyclotransferase - - - 0.00000000000000000000000000000000000000000000000000001663 213.0
YYD1_k127_778463_7 Helix-hairpin-helix motif K02237 - - 0.0000000000000001536 87.0
YYD1_k127_778463_8 ABC transporter transmembrane region - - - 0.000000005175 60.0
YYD1_k127_830678_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008533 381.0
YYD1_k127_830678_1 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000000000005255 213.0
YYD1_k127_830678_2 PFAM glycosyl transferase group 1 - - - 0.000000000000000002189 88.0
YYD1_k127_830678_3 TonB-dependent Receptor Plug Domain - - - 0.00000000000000001079 98.0
YYD1_k127_830678_4 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000149 76.0
YYD1_k127_836560_0 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 443.0
YYD1_k127_836560_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000001487 203.0
YYD1_k127_836560_2 PFAM acyltransferase 3 - - - 0.000000000000000000004932 102.0
YYD1_k127_836560_3 Copper resistance protein CopC K14166 - - 0.000000001202 69.0
YYD1_k127_836560_4 CopC domain K07156 - - 0.0008004 51.0
YYD1_k127_949697_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 426.0
YYD1_k127_949697_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 323.0
YYD1_k127_949697_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 310.0
YYD1_k127_949697_3 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000905 208.0
YYD1_k127_949697_4 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000001357 184.0
YYD1_k127_949697_5 zinc metalloprotease K11749 - - 0.00000000000003434 85.0