Overview

ID MAG04629
Name YYD1_bin.8
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Blastocatellia
Order Pyrinomonadales
Family Pyrinomonadaceae
Genus PSRF01
Species
Assembly information
Completeness (%) 52.35
Contamination (%) 0.3
GC content (%) 53.0
N50 (bp) 4,687
Genome size (bp) 2,145,494

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1827

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1000692_0 von Willebrand factor, type A - - - 0.00000000000000000001163 107.0
YYD1_k127_1000692_1 von Willebrand factor type A domain K07114 - - 0.00000006776 64.0
YYD1_k127_102087_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 2e-323 1007.0
YYD1_k127_102087_1 Integral membrane protein TerC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007145 331.0
YYD1_k127_102087_2 copper resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 335.0
YYD1_k127_102087_3 Chromate transporter K07240 - - 0.00000000000000000001282 93.0
YYD1_k127_1035534_0 Peptidase dimerisation domain K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000001918 239.0
YYD1_k127_1035534_1 protein containing SIS (Sugar ISomerase) phosphosugar binding domain - - - 0.0000000000000000000000000000000000000000000000000000002435 202.0
YYD1_k127_1035534_2 BadF BadG BcrA BcrD K00884,K02616 - 2.7.1.59 0.00000000000000000000000000000000000000002821 164.0
YYD1_k127_1035534_3 Participates in the control of copper homeostasis K06201 GO:0006873,GO:0006875,GO:0006878,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0046688,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771 - 0.0000000000000000000000000000000000001211 150.0
YYD1_k127_1035534_4 Peptidase S9 prolyl oligopeptidase active site - - - 0.000000000001305 70.0
YYD1_k127_1036304_0 ABC-2 type transporter K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 413.0
YYD1_k127_1036304_1 Wzt C-terminal domain K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 339.0
YYD1_k127_1036304_2 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000000000000004495 164.0
YYD1_k127_1036304_3 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000001751 109.0
YYD1_k127_1036304_4 helix_turn_helix, Lux Regulon K03556 - - 0.00000006147 61.0
YYD1_k127_1049532_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 343.0
YYD1_k127_1053489_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000004182 221.0
YYD1_k127_1053489_1 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000002604 198.0
YYD1_k127_1053489_2 Histidine kinase K02668,K07708 - 2.7.13.3 0.00000000000000000000001605 111.0
YYD1_k127_1053489_3 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000004138 102.0
YYD1_k127_1055127_0 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005624 413.0
YYD1_k127_1055127_1 PFAM peptidylprolyl isomerase FKBP-type K01802,K03772 - 5.2.1.8 0.0000000000000000000000000000000000000001733 157.0
YYD1_k127_1055127_2 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000002394 105.0
YYD1_k127_105884_0 Biopterin-dependent aromatic amino acid hydroxylase K00500 - 1.14.16.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001548 284.0
YYD1_k127_105884_1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000001026 263.0
YYD1_k127_105884_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000001356 106.0
YYD1_k127_105884_3 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.0000000000000005769 79.0
YYD1_k127_1060832_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1313.0
YYD1_k127_1060832_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003826 247.0
YYD1_k127_1060832_2 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000002546 209.0
YYD1_k127_1060832_3 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000000001261 188.0
YYD1_k127_1060832_4 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000001468 165.0
YYD1_k127_1060832_5 beta-lactamase domain protein - - - 0.0000000000000000000000000000007067 132.0
YYD1_k127_1060832_6 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000002442 81.0
YYD1_k127_1060832_8 ribosome binding - - - 0.0001277 49.0
YYD1_k127_1081269_0 Phosphoenolpyruvate carboxykinase K01610 - 4.1.1.49 1.659e-210 666.0
YYD1_k127_1081269_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 466.0
YYD1_k127_1081269_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001016 231.0
YYD1_k127_1081269_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000004698 192.0
YYD1_k127_1081269_4 HIT domain K02503 - - 0.00000000000000000000000000000000000000006118 154.0
YYD1_k127_1081269_5 - - - - 0.000000000000000000000000000000000000003207 150.0
YYD1_k127_1086173_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 477.0
YYD1_k127_1086173_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 398.0
YYD1_k127_1086173_2 PFAM Peptidase M19, renal dipeptidase K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 319.0
YYD1_k127_1086173_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 304.0
YYD1_k127_1086173_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 299.0
YYD1_k127_1086173_5 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000008614 246.0
YYD1_k127_1086173_6 - - - - 0.0000000000000000000000000000003835 139.0
YYD1_k127_1101804_0 4Fe-4S dicluster domain K00184 - - 4.461e-279 882.0
YYD1_k127_1108358_0 Proline dehydrogenase K00318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 327.0
YYD1_k127_1108358_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000001016 238.0
YYD1_k127_1108358_2 von Willebrand factor, type A K07114 - - 0.0000000000000000000002732 111.0
YYD1_k127_1119570_0 PFAM type II secretion system protein E K02283,K03609 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 569.0
YYD1_k127_1119570_1 pilus assembly protein K02282 - - 0.0000000000000000000000000000000000000002232 160.0
YYD1_k127_1119570_2 Type II secretion system K12510 - - 0.0000000000000000000000000000001773 133.0
YYD1_k127_1125537_0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002151 293.0
YYD1_k127_1125537_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004069 260.0
YYD1_k127_1125537_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009851 267.0
YYD1_k127_1125537_3 nucleotide metabolic process - - - 0.00000000000000000000000000000000000000000000000000000845 199.0
YYD1_k127_1125537_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000004528 158.0
YYD1_k127_1125537_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.000000000000000000000000000000002854 137.0
YYD1_k127_1125537_6 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000002968 129.0
YYD1_k127_1140032_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 2.617e-196 618.0
YYD1_k127_1140032_1 response to heat K03668,K09914 - - 0.0000000000000007083 89.0
YYD1_k127_1140032_2 Putative restriction endonuclease - - - 0.00000000001337 65.0
YYD1_k127_115610_0 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 306.0
YYD1_k127_115610_1 Spermine/spermidine synthase domain - - - 0.0000000000000000000000000000000000000000002756 164.0
YYD1_k127_1160094_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009844 582.0
YYD1_k127_1160094_1 Domain of unknown function (DUF4956) - - - 0.00000000002331 74.0
YYD1_k127_1161843_0 PFAM Glycoside hydrolase family 2 K01192 - 3.2.1.25 6.89e-238 762.0
YYD1_k127_1161843_1 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000001582 59.0
YYD1_k127_1162193_0 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 569.0
YYD1_k127_1162193_1 amino acid K03294 - - 0.00001208 48.0
YYD1_k127_1175863_0 Thioredoxin domain - - - 0.0000000000000113 79.0
YYD1_k127_1175863_1 Lysin motif - - - 0.00003552 55.0
YYD1_k127_1180834_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 622.0
YYD1_k127_1180834_1 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 461.0
YYD1_k127_1181039_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 4.214e-237 749.0
YYD1_k127_1181039_1 Deoxyhypusine synthase K00809 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009987,GO:0010467,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019538,GO:0034038,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 300.0
YYD1_k127_1189242_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008021 373.0
YYD1_k127_1189242_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 338.0
YYD1_k127_1189242_2 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 296.0
YYD1_k127_1189242_3 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000000000001294 216.0
YYD1_k127_1189242_4 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000000000000000003472 183.0
YYD1_k127_1189242_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000006599 146.0
YYD1_k127_1189242_6 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0000000000000000000000000000000003227 142.0
YYD1_k127_1189242_7 Cupin domain - - - 0.000000000003508 74.0
YYD1_k127_1201761_0 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 387.0
YYD1_k127_1201761_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 355.0
YYD1_k127_1201761_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009415 296.0
YYD1_k127_1201761_3 aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000003194 263.0
YYD1_k127_1222622_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.755e-223 711.0
YYD1_k127_1222622_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000001048 98.0
YYD1_k127_1222622_2 Metallo-beta-lactamase superfamily - - - 0.0000000000006261 70.0
YYD1_k127_123409_0 Heparinase II/III-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 353.0
YYD1_k127_123409_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000002245 261.0
YYD1_k127_1235882_0 L-seryl-tRNA selenium transferase K01042 - 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 366.0
YYD1_k127_1235882_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 304.0
YYD1_k127_1235882_2 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001005 271.0
YYD1_k127_1235882_3 CHASE2 - - - 0.000000000000000000000000000000000000000000000000002119 206.0
YYD1_k127_1235882_4 SET domain K07117 - - 0.0000000000000000000000000000009402 126.0
YYD1_k127_1235882_5 - - - - 0.000000000000000000001009 100.0
YYD1_k127_1235882_6 Putative restriction endonuclease - - - 0.00004116 48.0
YYD1_k127_1240559_0 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000001317 211.0
YYD1_k127_1251192_0 Hydrophobe Amphiphile Efflux-1 (HAE1) Family K03296,K18138 - - 1.138e-229 725.0
YYD1_k127_1251192_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 426.0
YYD1_k127_1251192_2 Integral membrane sensor signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001799 283.0
YYD1_k127_1251192_3 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000005427 185.0
YYD1_k127_1256316_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003863 543.0
YYD1_k127_1256316_1 PFAM Short-chain dehydrogenase reductase SDR K00065 - 1.1.1.127 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 331.0
YYD1_k127_125824_0 Tricorn protease homolog - - - 0.0 1297.0
YYD1_k127_125824_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 297.0
YYD1_k127_125824_2 RNA 2'-phosphotransferase, Tpt1 / KptA family K07559 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005826 253.0
YYD1_k127_125824_3 DinB family - - - 0.0000000000000000000000000000000000000000000000000000000002744 206.0
YYD1_k127_125824_4 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000001074 181.0
YYD1_k127_1266324_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 534.0
YYD1_k127_1266324_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506 392.0
YYD1_k127_1266324_2 pfkB family carbohydrate kinase K18478 - 2.7.1.184 0.00000000000000000000000000000000000000000000000000000000000000008445 235.0
YYD1_k127_1266672_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 349.0
YYD1_k127_1266672_1 Serine acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000001077 107.0
YYD1_k127_1279427_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 1.116e-243 771.0
YYD1_k127_1279427_1 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000001859 219.0
YYD1_k127_1291412_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007534 466.0
YYD1_k127_1291412_1 RNA polymerase sigma-54 factor K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 340.0
YYD1_k127_1291412_2 lipopolysaccharide-transporting ATPase activity K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 307.0
YYD1_k127_1291412_3 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000001134 135.0
YYD1_k127_1291412_4 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.00000000000000000000001852 117.0
YYD1_k127_1292275_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007167 529.0
YYD1_k127_1292275_1 Belongs to the BshC family K22136 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 305.0
YYD1_k127_1294675_0 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000004081 221.0
YYD1_k127_1294675_1 Histidine kinase - - - 0.0000000000000000000000000000002815 125.0
YYD1_k127_1294675_2 cheY-homologous receiver domain - - - 0.000000000000000000002309 98.0
YYD1_k127_1353336_0 SpoVR like protein K06415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 505.0
YYD1_k127_1353336_1 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 497.0
YYD1_k127_1353336_2 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000001703 146.0
YYD1_k127_1353336_3 PrcB C-terminal - - - 0.00000001416 62.0
YYD1_k127_1356254_0 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 488.0
YYD1_k127_1392510_0 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 579.0
YYD1_k127_1392510_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 472.0
YYD1_k127_1392510_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000046 93.0
YYD1_k127_1392510_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000125 60.0
YYD1_k127_1392510_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 410.0
YYD1_k127_1392510_3 PFAM Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 292.0
YYD1_k127_1392510_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000001634 158.0
YYD1_k127_1392510_5 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000003548 152.0
YYD1_k127_1392510_6 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000001751 134.0
YYD1_k127_1392510_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000003743 136.0
YYD1_k127_1392510_8 Ribosomal protein L17 K02879 - - 0.00000000000000000000000006811 115.0
YYD1_k127_1392510_9 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000009624 109.0
YYD1_k127_1398462_0 Carboxypeptidase regulatory-like domain - - - 8.967e-267 854.0
YYD1_k127_1398462_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001807 289.0
YYD1_k127_1398462_2 Histidine kinase - - - 0.00000001819 61.0
YYD1_k127_1401885_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 360.0
YYD1_k127_1401885_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001165 289.0
YYD1_k127_1401885_2 PFAM HNH endonuclease - - - 0.00000000000000000000000000001543 125.0
YYD1_k127_1407998_0 Fumarate reductase flavoprotein C-term K00239 GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0022900,GO:0044237,GO:0045333,GO:0055114 1.3.5.1,1.3.5.4 5.087e-274 856.0
YYD1_k127_1407998_1 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 337.0
YYD1_k127_1407998_2 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 316.0
YYD1_k127_1407998_3 TIGRFAM succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 - - 0.00000000000000362 76.0
YYD1_k127_1407998_4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000005399 66.0
YYD1_k127_1408034_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 539.0
YYD1_k127_1408034_1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 416.0
YYD1_k127_1408034_2 Permease, YjgP YjgQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008328 285.0
YYD1_k127_1408034_3 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000002501 233.0
YYD1_k127_1408034_4 Involved in DNA repair and RecF pathway recombination K03474,K03584 GO:0008150,GO:0009314,GO:0009628,GO:0050896 2.6.99.2 0.000000000000000000000000000000000000434 150.0
YYD1_k127_1408034_5 Glucose / Sorbosone dehydrogenase - - - 0.00003292 49.0
YYD1_k127_1408034_6 Peptidase S8 - - - 0.0001954 50.0
YYD1_k127_141072_0 four-way junction helicase activity K03551 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 440.0
YYD1_k127_141072_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 360.0
YYD1_k127_141072_10 lipopolysaccharide transmembrane transporter activity K07058 - - 0.00000000000000004906 91.0
YYD1_k127_141072_11 Fumarate reductase flavoprotein C-term K00239,K00278 - 1.3.5.1,1.3.5.4,1.4.3.16 0.00000000000001213 73.0
YYD1_k127_141072_12 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.0000000000001643 78.0
YYD1_k127_141072_13 nucleotidyltransferase activity - - - 0.000006552 54.0
YYD1_k127_141072_14 Ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.00002691 50.0
YYD1_k127_141072_2 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002636 243.0
YYD1_k127_141072_3 PFAM Class II aldolase adducin K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000004678 217.0
YYD1_k127_141072_4 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000000000000000000000002139 188.0
YYD1_k127_141072_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000007628 181.0
YYD1_k127_141072_6 PFAM LemA family K03744 - - 0.0000000000000000000000000000000000000000001046 167.0
YYD1_k127_141072_7 BMC K04027 - - 0.0000000000000000000000000000000001892 133.0
YYD1_k127_141072_8 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028,K08697 - - 0.000000000000000000000000000006516 120.0
YYD1_k127_141072_9 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.000000000000000000000001108 106.0
YYD1_k127_1417738_0 Domain of unknown function (DUF3536) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004732 515.0
YYD1_k127_1417738_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002317 240.0
YYD1_k127_1417738_2 transcriptional regulator sugar kinase K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000004127 234.0
YYD1_k127_1417738_3 Ion channel - - - 0.000000000000000000000000000000000000000000000000000000001111 206.0
YYD1_k127_1417738_4 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.000000000237 66.0
YYD1_k127_1418361_0 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003425 554.0
YYD1_k127_1418361_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 351.0
YYD1_k127_1418361_2 Isochorismatase family K08281 - 3.5.1.19 0.0000000000000000000000000000000000000000000000000000000008695 206.0
YYD1_k127_1418361_3 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.00000000001343 72.0
YYD1_k127_1515072_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1223.0
YYD1_k127_1515072_1 PFAM BioY protein K03523 - - 0.000000000000000000000000000000000000000006391 160.0
YYD1_k127_1520812_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000323 275.0
YYD1_k127_1520812_1 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000003402 217.0
YYD1_k127_1530399_0 ATP-dependent helicase nuclease subunit A K16898 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000002746 253.0
YYD1_k127_1530399_1 The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation K16899 - 3.6.4.12 0.000000000000000000000000000000000001476 160.0
YYD1_k127_1530399_2 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.0000000000000000000000001779 107.0
YYD1_k127_1549522_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 539.0
YYD1_k127_1549522_1 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 303.0
YYD1_k127_1549522_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000005898 53.0
YYD1_k127_1551927_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 393.0
YYD1_k127_1551927_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002597 280.0
YYD1_k127_1551927_2 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765,K02502 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000002067 193.0
YYD1_k127_1551927_3 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000009578 55.0
YYD1_k127_1559230_0 Aminotransferase class-V K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 355.0
YYD1_k127_1559230_1 amino acid transport K03294,K11737 - - 0.000000000000000000000000000000000000000000000004604 186.0
YYD1_k127_1559230_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000002591 153.0
YYD1_k127_1559603_0 orotate phosphoribosyltransferase activity K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000003056 228.0
YYD1_k127_1559603_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000009237 200.0
YYD1_k127_1559603_2 Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity K03763 - 2.7.7.7 0.000000000000000000000000000000000000000006751 166.0
YYD1_k127_1559603_3 SNARE associated Golgi protein - - - 0.00000001231 59.0
YYD1_k127_1581155_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.0006981 51.0
YYD1_k127_1595729_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 362.0
YYD1_k127_1595729_1 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.00000000000000000000000000000000000000000000000000000000000000000004007 241.0
YYD1_k127_1595729_2 Histidine kinase K02668,K07708 - 2.7.13.3 0.0000000000000000000000000000000001621 140.0
YYD1_k127_1597401_0 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 300.0
YYD1_k127_1597401_1 Protein of unknown function (DUF2490) - - - 0.0000001398 61.0
YYD1_k127_1606229_0 Belongs to the 5'-nucleotidase family K11751 - 3.1.3.5,3.6.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007607 526.0
YYD1_k127_1606229_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001377 275.0
YYD1_k127_1606229_2 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006453 250.0
YYD1_k127_1606229_3 hydrolase of the alpha beta K07018 - - 0.0000000000000000000000000000000000000000000000003553 183.0
YYD1_k127_1606229_4 photosynthesis - - - 0.00000000000000000000000000000000000000002758 157.0
YYD1_k127_1606229_5 Belongs to the Fur family K09825 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000006679 132.0
YYD1_k127_1606229_6 Thioesterase superfamily K10806 - - 0.000000000000000000000000000003886 125.0
YYD1_k127_1606229_7 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000004918 108.0
YYD1_k127_1606779_0 trisaccharide binding - - - 6.623e-216 699.0
YYD1_k127_1606779_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007097 351.0
YYD1_k127_1606779_2 Hydantoinase/oxoprolinase K01473 - 3.5.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 325.0
YYD1_k127_1606779_3 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004012 278.0
YYD1_k127_1606779_4 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000000000000000000000000000000009905 208.0
YYD1_k127_1606779_5 glycolate biosynthetic process K01091,K06019,K13292 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008967,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 3.1.3.18,3.6.1.1 0.000000000000000000000000000000000000000000000002119 182.0
YYD1_k127_1606779_6 WD40-like Beta Propeller Repeat - - - 0.00000007397 64.0
YYD1_k127_1613226_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005882 613.0
YYD1_k127_1613226_1 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 451.0
YYD1_k127_1613226_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 311.0
YYD1_k127_1613226_3 - - - - 0.000000000000000000000008872 107.0
YYD1_k127_1613226_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000447 97.0
YYD1_k127_1614644_0 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 364.0
YYD1_k127_1614644_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000007476 159.0
YYD1_k127_1614644_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate - - - 0.0000000000000982 72.0
YYD1_k127_1614644_3 O-antigen ligase like membrane protein - - - 0.00001688 53.0
YYD1_k127_1622470_0 CHASE3 domain - - - 0.000000000000000000000000000000000000000000000000001065 201.0
YYD1_k127_1622470_1 Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure - - - 0.0000000000000000000000000000009888 123.0
YYD1_k127_1622470_2 Gas vesicle - - - 0.00000000000000000000000000006043 119.0
YYD1_k127_1622470_3 Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth - - - 0.00000000000000000000000005673 111.0
YYD1_k127_1622470_4 Gas vesicle synthesis protein GvpL/GvpF - - - 0.0000000000000007556 85.0
YYD1_k127_1647924_0 GTP-binding protein TypA K06207 - - 6.119e-258 807.0
YYD1_k127_1647924_1 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000001669 175.0
YYD1_k127_1647924_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00004802 47.0
YYD1_k127_1652126_0 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 332.0
YYD1_k127_1652126_1 class II (D K K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004999 314.0
YYD1_k127_1652126_2 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 297.0
YYD1_k127_1652126_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000775 138.0
YYD1_k127_1652126_4 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000158 138.0
YYD1_k127_1652126_5 cytokinin biosynthetic process K06966 - 3.2.2.10 0.00000000000000000000000000000006185 132.0
YYD1_k127_1676332_0 Tricorn protease C1 domain K08676 - - 0.0 1275.0
YYD1_k127_1676332_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009359 574.0
YYD1_k127_1676332_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 481.0
YYD1_k127_1676332_3 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004916 380.0
YYD1_k127_1676882_0 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000006272 145.0
YYD1_k127_1676882_1 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000000000000000000000004745 111.0
YYD1_k127_1676882_2 Lipopolysaccharide-assembly - - - 0.00000000000000000002306 98.0
YYD1_k127_167745_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 3.336e-300 937.0
YYD1_k127_167745_1 Tetratricopeptide repeat - - - 0.0000000000000001907 83.0
YYD1_k127_167745_2 acyl-coa dehydrogenase K00248 - 1.3.8.1 0.000000000005379 65.0
YYD1_k127_167745_3 Belongs to the ompA family - - - 0.0001854 53.0
YYD1_k127_1677814_0 Oxidoreductase NAD-binding domain protein K02030,K03810 - - 3.889e-207 666.0
YYD1_k127_1677814_1 Glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 394.0
YYD1_k127_1677814_2 Glycosyltransferase like family 2 K16870 - 2.4.1.289 0.00000000000000000000000000000000000000000000000000000000000004007 230.0
YYD1_k127_1677814_3 methyltransferase K05928 - 2.1.1.95 0.0000000000000000000000000000000000000000000000000000004269 204.0
YYD1_k127_1677814_4 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000002104 189.0
YYD1_k127_1677814_5 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000001107 169.0
YYD1_k127_1677814_6 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000003995 69.0
YYD1_k127_1678590_0 Sigma-70, region 4 K03088 - - 0.00000000000009655 78.0
YYD1_k127_1678590_1 PBS lyase HEAT-like repeat - - - 0.000000006374 69.0
YYD1_k127_1678590_2 deoxyhypusine monooxygenase activity - - - 0.000002182 60.0
YYD1_k127_1748914_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000158 160.0
YYD1_k127_1748914_1 PFAM peptidase S13 D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.00000000000000000000000000000000000000005042 165.0
YYD1_k127_1748914_2 Pilus assembly protein PilX K02673 - - 0.000000000000001188 89.0
YYD1_k127_1748914_3 Prokaryotic N-terminal methylation motif K02671 - - 0.0000263 52.0
YYD1_k127_1748914_4 Psort location Cytoplasmic, score 8.96 K03653 - 4.2.99.18 0.00006789 49.0
YYD1_k127_1748914_5 Pfam:N_methyl_2 - - - 0.0009113 50.0
YYD1_k127_1754341_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 305.0
YYD1_k127_1754341_1 PFAM nitrogen-fixing NifU domain protein K04488 - - 0.00000000000000000000000000000001355 135.0
YYD1_k127_1762908_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 579.0
YYD1_k127_1762908_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 335.0
YYD1_k127_1762908_2 Enoyl-(Acyl carrier protein) reductase K00034,K03366 - 1.1.1.304,1.1.1.47,1.1.1.76 0.000000000000000000000000000000000000000000000000000004098 198.0
YYD1_k127_1762908_3 Monogalactosyldiacylglycerol (MGDG) synthase K03429 - 2.4.1.315 0.00008354 49.0
YYD1_k127_1763944_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 453.0
YYD1_k127_1763944_1 FAD linked oxidases, C-terminal domain - - - 0.00000000000000000000000000000000002158 138.0
YYD1_k127_1794251_0 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 329.0
YYD1_k127_1794251_1 Regulatory protein, FmdB - - - 0.0000000000000000000006427 98.0
YYD1_k127_1794251_2 YtxH-like protein - - - 0.0000058 54.0
YYD1_k127_1798595_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005422 268.0
YYD1_k127_1798595_1 Transcriptional regulator - - - 0.0000000000000000000000000000000001608 138.0
YYD1_k127_1799710_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 326.0
YYD1_k127_1799710_1 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007319 304.0
YYD1_k127_1799710_2 zinc metalloprotease - - - 0.000000000000000009096 85.0
YYD1_k127_1803113_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 342.0
YYD1_k127_1803113_1 Serine aminopeptidase, S33 K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005965 288.0
YYD1_k127_1803113_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.00000000000031 82.0
YYD1_k127_1803935_0 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 374.0
YYD1_k127_1803935_1 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000009228 114.0
YYD1_k127_1803935_2 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000009678 74.0
YYD1_k127_1803935_3 - - - - 0.000003116 54.0
YYD1_k127_1835948_0 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814,K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 391.0
YYD1_k127_1840644_0 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000003656 192.0
YYD1_k127_1840644_1 Radical SAM K22227 - - 0.0000000000000000000000000000000000000127 159.0
YYD1_k127_1840644_2 PFAM Monogalactosyldiacylglycerol synthase, Glycosyltransferase 28 domain-containing protein - - - 0.00000000000000000000000002884 119.0
YYD1_k127_1840644_3 PFAM response regulator receiver - - - 0.00000000000000000000000005189 112.0
YYD1_k127_1850708_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 397.0
YYD1_k127_1850708_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000007338 270.0
YYD1_k127_1850708_2 orotate phosphoribosyltransferase activity K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000223 228.0
YYD1_k127_1850708_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000005599 198.0
YYD1_k127_1850708_4 EXOIII K02342 - 2.7.7.7 0.00000000000000000000000000000000000000008671 162.0
YYD1_k127_1850708_5 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000004331 154.0
YYD1_k127_1850708_6 PFAM SNARE associated Golgi protein - - - 0.00000000000000000001422 100.0
YYD1_k127_1850708_7 SNARE associated Golgi protein - - - 0.00001466 55.0
YYD1_k127_1871482_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006961 264.0
YYD1_k127_1871482_1 - - - - 0.00000000000000000000000000000000000000000000000000000001266 203.0
YYD1_k127_1871482_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000002819 205.0
YYD1_k127_1871824_0 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003835 441.0
YYD1_k127_1871824_1 - - - - 0.0000000000000000000000000000000002381 138.0
YYD1_k127_1871824_2 Belongs to the thiolase family K00632 - 2.3.1.16 0.0000000000000003667 78.0
YYD1_k127_1886532_0 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 546.0
YYD1_k127_1886532_1 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 376.0
YYD1_k127_1886532_2 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000002059 233.0
YYD1_k127_1886532_3 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000002704 220.0
YYD1_k127_1886532_4 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000000000000000000000000000000000005092 215.0
YYD1_k127_1886532_5 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000002346 212.0
YYD1_k127_1886532_6 HAD-hyrolase-like K01091,K01838 - 3.1.3.18,5.4.2.6 0.0000000000000000000000000000000003327 140.0
YYD1_k127_1886532_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000001148 121.0
YYD1_k127_1886532_8 histone H2A K63-linked ubiquitination - - - 0.00000000002485 71.0
YYD1_k127_1891332_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 389.0
YYD1_k127_1891332_1 PFAM Rhomboid family K19225 - 3.4.21.105 0.000000129 61.0
YYD1_k127_192136_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000001738 236.0
YYD1_k127_192136_1 major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000009847 189.0
YYD1_k127_192136_2 Bacterial transcriptional activator domain - - - 0.00001035 48.0
YYD1_k127_1928247_0 MatE - - - 2.207e-218 688.0
YYD1_k127_1928247_1 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008769 454.0
YYD1_k127_1928247_2 nuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 361.0
YYD1_k127_1928247_3 PFAM DGPFAETKE family protein - - - 0.0000000000000000000000000000000000000000000000000000000001527 206.0
YYD1_k127_1928247_4 - - - - 0.0000000000000000000000000000000000006088 142.0
YYD1_k127_1942105_0 Sodium calcium exchanger membrane K07300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 394.0
YYD1_k127_1942105_1 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 344.0
YYD1_k127_1942105_2 Possible lysine decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003308 274.0
YYD1_k127_1948593_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00282 GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006807,GO:0008150,GO:0008152,GO:0009069,GO:0009987,GO:0016491,GO:0016638,GO:0016642,GO:0017144,GO:0019752,GO:0032991,GO:0042133,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901605,GO:1902494,GO:1990204 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 472.0
YYD1_k127_1948593_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000001301 222.0
YYD1_k127_1948593_2 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 - - 0.0000000000000000000000000000000000000000000001337 171.0
YYD1_k127_1959043_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.588e-232 728.0
YYD1_k127_1959043_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000001605 119.0
YYD1_k127_1959043_2 SPFH Band 7 PHB domain protein - - - 0.0000000000000000000000000002708 119.0
YYD1_k127_1959043_3 PFAM Bacterial regulatory proteins, gntR family K07979 - - 0.0000000000000000000001944 102.0
YYD1_k127_1959043_4 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000005251 89.0
YYD1_k127_1964339_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 553.0
YYD1_k127_1973736_0 UPF0210 protein K09157 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 338.0
YYD1_k127_1973736_1 Belongs to the UPF0237 family K07166 - - 0.0000000000000000001534 94.0
YYD1_k127_1977658_0 TROVE domain K11127 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001346 293.0
YYD1_k127_2029330_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000004086 191.0
YYD1_k127_2029330_1 - - - - 0.000000000000000000006794 100.0
YYD1_k127_2030512_0 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 404.0
YYD1_k127_2030512_1 Domain of unknown function (DUF4157) - - - 0.00000000000000000000000000000000000000000001391 179.0
YYD1_k127_2031846_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 508.0
YYD1_k127_2031846_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006117 322.0
YYD1_k127_2031846_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000001509 220.0
YYD1_k127_2031846_3 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000009735 211.0
YYD1_k127_2036788_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 353.0
YYD1_k127_2036788_1 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002982 261.0
YYD1_k127_2036788_2 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001075 259.0
YYD1_k127_2036788_3 - - - - 0.000000000000000000000000000000000000000000000000003595 193.0
YYD1_k127_2036788_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000001367 74.0
YYD1_k127_204348_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5.866e-261 818.0
YYD1_k127_204348_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000000000002595 255.0
YYD1_k127_204348_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000006145 161.0
YYD1_k127_2048297_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002999 272.0
YYD1_k127_2048297_1 chlorophyll binding - - - 0.000000000000000000000000000000000000000000009106 181.0
YYD1_k127_2048297_2 Transcriptional regulatory protein, C terminal K02483 - - 0.0000000000000002497 79.0
YYD1_k127_20900_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 430.0
YYD1_k127_20900_1 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007028 310.0
YYD1_k127_2111234_0 protein kinase related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 542.0
YYD1_k127_2111234_1 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006595 522.0
YYD1_k127_2111234_2 Iron-containing alcohol dehydrogenase K00001,K13954 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000105 232.0
YYD1_k127_2111234_3 - - - - 0.0000000000000000000000000000000000000000000000000003514 191.0
YYD1_k127_2122632_0 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008268 297.0
YYD1_k127_2122632_1 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008841 279.0
YYD1_k127_2122632_2 Lecithin:cholesterol acyltransferase - - - 0.00000000000000000000000000000000000000000000005779 186.0
YYD1_k127_2122632_3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 2.5.1.120,2.5.1.77 0.00000000000000000000000006375 113.0
YYD1_k127_2122632_4 PFAM Sulfotransferase domain - - - 0.0002378 45.0
YYD1_k127_2172897_0 ADP-glyceromanno-heptose 6-epimerase activity K01710,K08678 - 4.1.1.35,4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 495.0
YYD1_k127_2172897_1 carbamoyl transferase, NodU family K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008231 469.0
YYD1_k127_2172897_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 373.0
YYD1_k127_2172897_3 Glycosyl transferase family 4 K02851 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0030145,GO:0034645,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0045229,GO:0046872,GO:0046914,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:1901576 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000002948 252.0
YYD1_k127_2172897_4 O-Antigen ligase K02847 - - 0.000000000000000000000000005501 126.0
YYD1_k127_2172897_5 23S rRNA-intervening sequence protein - - - 0.00000003929 59.0
YYD1_k127_2195507_0 ABC transporter K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009956 278.0
YYD1_k127_2195507_1 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000002453 224.0
YYD1_k127_2205552_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005496 274.0
YYD1_k127_2205552_1 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000000000000001503 118.0
YYD1_k127_2205552_2 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000002139 94.0
YYD1_k127_2234588_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006284 352.0
YYD1_k127_2234588_1 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000003238 169.0
YYD1_k127_2234588_2 ECF sigma factor K03088 - - 0.0000003772 53.0
YYD1_k127_2234588_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.00001241 57.0
YYD1_k127_2239813_0 cellulose binding - - - 8.77e-209 674.0
YYD1_k127_2239813_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 370.0
YYD1_k127_2286288_0 COG0635 Coproporphyrinogen III oxidase and related Fe-S - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003567 492.0
YYD1_k127_2286288_1 COG0644 Dehydrogenases (flavoproteins) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 411.0
YYD1_k127_2286288_2 thiol-disulfide - - - 0.000008878 51.0
YYD1_k127_2286288_3 Sodium/hydrogen exchanger family - - - 0.00008006 51.0
YYD1_k127_2314626_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007002 389.0
YYD1_k127_2314626_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 368.0
YYD1_k127_2314626_2 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000000006169 141.0
YYD1_k127_2314626_3 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.000000000000000000000000000000000002261 149.0
YYD1_k127_2314626_4 Xanthine and CO dehydrogenases maturation factor XdhC CoxF K07402 - - 0.00000000000000000001133 95.0
YYD1_k127_2322047_0 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000004819 252.0
YYD1_k127_2322047_1 - - - - 0.00000001544 65.0
YYD1_k127_2329952_0 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 353.0
YYD1_k127_2329952_1 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000001918 258.0
YYD1_k127_2329952_2 helix_turn_helix gluconate operon transcriptional repressor K07978 - - 0.0000000000000000000000000000000000000000000000000000000000000003358 231.0
YYD1_k127_2329952_3 Cupin domain - - - 0.00000000000000000000000000000000000000000001386 164.0
YYD1_k127_2329952_4 Protein of unknown function (DUF2721) - - - 0.00000000000000000000000000000003844 132.0
YYD1_k127_2329952_5 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000006332 111.0
YYD1_k127_2329952_6 Cytochrome c - - - 0.00000000000001301 81.0
YYD1_k127_2343271_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009635 491.0
YYD1_k127_2343271_1 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000563 343.0
YYD1_k127_2343271_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 304.0
YYD1_k127_2343271_3 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001633 283.0
YYD1_k127_2343271_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000003258 152.0
YYD1_k127_2343271_5 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000005049 122.0
YYD1_k127_2343271_6 Histidine kinase - - - 0.0000000000000000000003083 100.0
YYD1_k127_2343271_7 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000004174 92.0
YYD1_k127_2343271_8 KH domain - - - 0.00000000000000006875 82.0
YYD1_k127_2348067_0 Tetratricopeptide repeat - - - 0.00000003175 66.0
YYD1_k127_2362264_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 434.0
YYD1_k127_2362264_1 TonB dependent receptor K16087 - - 0.0000000000000000000000000000237 137.0
YYD1_k127_2362264_2 Carboxypeptidase regulatory-like domain - - - 0.0005255 53.0
YYD1_k127_2369082_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 331.0
YYD1_k127_2369082_1 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003484 271.0
YYD1_k127_2369082_2 extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001059 268.0
YYD1_k127_2369082_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000000001917 183.0
YYD1_k127_2369082_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000000000000000016 152.0
YYD1_k127_2369082_5 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000001009 150.0
YYD1_k127_2369082_6 Glycosyl hydrolase family 3 N-terminal domain protein K01207 - 3.2.1.52 0.00000000000000002872 89.0
YYD1_k127_2371823_0 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 1.212e-243 771.0
YYD1_k127_2371823_1 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000006021 205.0
YYD1_k127_2378067_0 PFAM Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 420.0
YYD1_k127_2378067_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000528 407.0
YYD1_k127_2378067_2 PFAM transferase hexapeptide repeat containing protein K00966 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 302.0
YYD1_k127_238394_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1234.0
YYD1_k127_238394_1 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 333.0
YYD1_k127_238394_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 324.0
YYD1_k127_2389460_0 peptidyl-tyrosine sulfation K03217,K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006773 267.0
YYD1_k127_2389460_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0000000000001051 72.0
YYD1_k127_2391023_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702,K08999 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009380,GO:0009628,GO:0032991,GO:0042802,GO:0044424,GO:0044464,GO:0050896,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 8.747e-265 830.0
YYD1_k127_2391023_1 acyl-CoA dehydrogenase K00249,K00255 - 1.3.8.7,1.3.8.8 0.00000000000003847 71.0
YYD1_k127_2391023_2 - - - - 0.00000001357 66.0
YYD1_k127_2393967_0 peroxiredoxin activity - - - 1.129e-274 850.0
YYD1_k127_2393967_1 electron transport chain K00347,K03614,K21163 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006669 371.0
YYD1_k127_2406223_0 Belongs to the ClpA ClpB family K03696 - - 1.981e-304 947.0
YYD1_k127_2406223_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000001314 220.0
YYD1_k127_2406223_2 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000000000000001165 225.0
YYD1_k127_2406223_3 Histidine kinase-like ATPase domain - - - 0.000000000000000000000000000000000000009497 156.0
YYD1_k127_2406223_4 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000007406 100.0
YYD1_k127_2406223_5 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03696 - - 0.0000009194 55.0
YYD1_k127_2409804_0 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 434.0
YYD1_k127_2409804_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 316.0
YYD1_k127_2409804_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 309.0
YYD1_k127_2409804_3 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000000000000000000006914 209.0
YYD1_k127_243158_0 Domain of unknown function (DUF5117) - - - 1.187e-288 908.0
YYD1_k127_243158_1 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 292.0
YYD1_k127_243158_2 TIGRFAM VWFA-related Acidobacterial domain - - - 0.000000000000000000000000000000000000000003511 177.0
YYD1_k127_2435958_0 Glutamine amidotransferases class-II K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 569.0
YYD1_k127_2435958_1 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 396.0
YYD1_k127_2435958_2 PFAM Alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000065 216.0
YYD1_k127_2435958_3 domain protein K02238 - - 0.000000000000000000000000000000000000000000002167 179.0
YYD1_k127_2435958_4 transcriptional regulator - - - 0.00002868 47.0
YYD1_k127_2435958_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00003901 51.0
YYD1_k127_2453907_0 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005431 381.0
YYD1_k127_2453907_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 354.0
YYD1_k127_2457206_0 PFAM Amidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008763 607.0
YYD1_k127_2457206_1 Phosphoglycerate mutase family - - - 0.00000000000000000000003387 106.0
YYD1_k127_2473623_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 3.608e-206 660.0
YYD1_k127_2473623_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000567 238.0
YYD1_k127_2473623_2 Tetratricopeptide repeat - - - 0.000000000007728 77.0
YYD1_k127_2480843_0 Aconitase C-terminal domain K01703 - 4.2.1.33,4.2.1.35 1.43e-280 875.0
YYD1_k127_2480843_1 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008183 537.0
YYD1_k127_2480843_2 Heparinase II/III-like protein - - - 0.0000000000000000000000000000000000000002118 158.0
YYD1_k127_2498216_0 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005303 312.0
YYD1_k127_2498216_1 Cupin domain - - - 0.00000000000000000000000000000000000000000000006752 171.0
YYD1_k127_2498216_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000004817 145.0
YYD1_k127_2503107_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 449.0
YYD1_k127_2503107_1 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006118 271.0
YYD1_k127_2503107_2 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.00000000000000000000000000000000002714 144.0
YYD1_k127_2511608_0 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 574.0
YYD1_k127_2511608_1 Thiol-disulfide oxidoreductase DCC - - - 0.000000000000000000000000000000005247 132.0
YYD1_k127_2511608_2 GYD domain - - - 0.000000000000000000000000003175 115.0
YYD1_k127_2516183_0 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 433.0
YYD1_k127_2516183_1 DNA ligase K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000008697 207.0
YYD1_k127_2516183_2 YceI-like domain - - - 0.0000000000001253 79.0
YYD1_k127_2524372_0 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000729 277.0
YYD1_k127_2524372_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001403 249.0
YYD1_k127_2524372_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000000000000000000000000000000000000005015 206.0
YYD1_k127_2543514_0 Cys/Met metabolism PLP-dependent enzyme K01760,K17217 - 4.4.1.1,4.4.1.2,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 415.0
YYD1_k127_2543514_1 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 341.0
YYD1_k127_2543514_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004584 316.0
YYD1_k127_2543514_3 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 302.0
YYD1_k127_2543514_4 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000006841 104.0
YYD1_k127_2544471_0 Mur ligase, middle domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000007248 263.0
YYD1_k127_2544471_1 Belongs to the Nudix hydrolase family K01515 - 3.6.1.13 0.0000000000000000000000000000000000002014 148.0
YYD1_k127_259634_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 380.0
YYD1_k127_259634_1 TPR-like protein K09527 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0030544,GO:0031072,GO:0051084,GO:0051085,GO:0061077 - 0.000000000004608 74.0
YYD1_k127_259634_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.00005166 50.0
YYD1_k127_2632532_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000007222 236.0
YYD1_k127_2632532_1 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000009202 142.0
YYD1_k127_2632532_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000001919 64.0
YYD1_k127_2650762_0 PFAM D-aminoacylase, C-terminal region K06015 - 3.5.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 469.0
YYD1_k127_2650762_1 PFAM TonB-dependent Receptor Plug - - - 0.0000000000000000000000000000000000000000000000000000000000000000001213 259.0
YYD1_k127_2672841_0 Sulfotransferase family - - - 0.00000000002569 78.0
YYD1_k127_2674989_0 Sortilin, neurotensin receptor 3, - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009031 568.0
YYD1_k127_2674989_1 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 417.0
YYD1_k127_2674989_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000007887 207.0
YYD1_k127_2674989_3 amino acid K03294 - - 0.0008146 43.0
YYD1_k127_2692254_0 COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component K09014 - - 4.897e-198 620.0
YYD1_k127_2692254_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 585.0
YYD1_k127_2692254_2 COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007958 390.0
YYD1_k127_2692254_3 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 360.0
YYD1_k127_2728364_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 492.0
YYD1_k127_2728364_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 310.0
YYD1_k127_2728364_2 with different specificities (related to short-chain alcohol K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001001 282.0
YYD1_k127_2728364_3 - - - - 0.000000005512 67.0
YYD1_k127_2730261_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003652 335.0
YYD1_k127_2730261_1 beta-ketoacyl-acyl-carrier-protein synthase III activity K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000209 239.0
YYD1_k127_2730261_2 Strictosidine synthase - - - 0.0000000002249 63.0
YYD1_k127_276334_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601,K03797 - 3.1.11.6,3.4.21.102 0.000000000000000000000000000000000000000000778 162.0
YYD1_k127_276334_1 oxidoreductase activity K12511 - - 0.0000000389 66.0
YYD1_k127_2785590_0 asparaginase K01424,K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.1,3.5.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 457.0
YYD1_k127_2785590_1 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008169 320.0
YYD1_k127_2785590_2 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000002616 259.0
YYD1_k127_2785590_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000000000001555 228.0
YYD1_k127_2785590_4 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000001819 215.0
YYD1_k127_2785590_5 PQQ-like domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000003544 230.0
YYD1_k127_2785590_6 Glyoxalase-like domain K06996 - - 0.000000000000000000000000000000000000000000000000000003179 192.0
YYD1_k127_2785590_8 PFAM Forkhead-associated protein - - - 0.000000000000000000000001252 110.0
YYD1_k127_2785590_9 Membrane - - - 0.000000003314 64.0
YYD1_k127_2798252_0 Peptidase family S41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 336.0
YYD1_k127_2798252_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000896 94.0
YYD1_k127_2808371_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 472.0
YYD1_k127_2808371_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000717 376.0
YYD1_k127_2808371_2 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 351.0
YYD1_k127_2808371_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000007842 113.0
YYD1_k127_2808371_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000001479 110.0
YYD1_k127_2808371_5 COG3209 Rhs family protein - - - 0.00002812 46.0
YYD1_k127_2814165_0 heat shock protein binding K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 334.0
YYD1_k127_2814165_1 TIGRFAM arsenite-activated ATPase (arsA) K01551 - 3.6.3.16 0.0000000000000000000000000000000000000000000000000000001982 207.0
YYD1_k127_2814165_3 Protein tyrosine kinase - - - 0.000000000661 61.0
YYD1_k127_2833317_0 Chlorite dismutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000371 283.0
YYD1_k127_2833317_1 COG4993 Glucose dehydrogenase - - - 0.000000037 61.0
YYD1_k127_2849819_0 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000158 205.0
YYD1_k127_2849819_1 deaminated base DNA N-glycosylase activity K21929 - 3.2.2.27 0.00000000000000000000000000000000000003155 151.0
YYD1_k127_2849819_2 PFAM methyltransferase - - - 0.0000000000000000000000000007185 120.0
YYD1_k127_2849819_3 PFAM Uncharacterised protein family UPF0047 - - - 0.0000000000000003663 81.0
YYD1_k127_2849819_4 alpha-L-arabinofuranosidase - - - 0.000001289 52.0
YYD1_k127_2853783_0 cellulose binding - - - 0.0 1051.0
YYD1_k127_2868575_0 PFAM Carbamoyltransferase K00612 - - 1.774e-266 835.0
YYD1_k127_2868575_1 Glycosyl transferase family group 2 K21305 - 2.4.1.335 0.0000000000000000000000000000000000009195 149.0
YYD1_k127_2868575_2 5-oxoprolinase K01469 - 3.5.2.9 0.00000000000004554 74.0
YYD1_k127_2868575_3 - - - - 0.0000000000002196 71.0
YYD1_k127_2877031_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 1.206e-209 662.0
YYD1_k127_2880773_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 481.0
YYD1_k127_2880773_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 477.0
YYD1_k127_2880773_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000008822 97.0
YYD1_k127_2880773_3 - - - - 0.0000000000001878 77.0
YYD1_k127_2894200_0 GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000000000000000000000000001173 226.0
YYD1_k127_2894200_1 LmbE family - - - 0.00000000004302 63.0
YYD1_k127_2895615_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 297.0
YYD1_k127_2895615_1 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000121 277.0
YYD1_k127_2895615_2 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001213 256.0
YYD1_k127_2895615_3 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000006914 209.0
YYD1_k127_2895615_4 transferase hexapeptide repeat containing protein K00966 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000002644 199.0
YYD1_k127_2895615_5 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.000000000000000000000000000000000008869 149.0
YYD1_k127_2895615_6 class II (D K K01893 - 6.1.1.22 0.00000000000000000000000000000000004583 140.0
YYD1_k127_2898727_0 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 344.0
YYD1_k127_2898727_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000002554 91.0
YYD1_k127_2898727_2 tRNA methyltransferase complex GCD14 subunit N-term K07442 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016426,GO:0016429,GO:0016740,GO:0016741,GO:0030488,GO:0031515,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.219,2.1.1.220 0.0000000000003772 68.0
YYD1_k127_2910232_0 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.0000000000000000000000000000000000000000000000538 177.0
YYD1_k127_2910232_1 Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites) K03653 - 4.2.99.18 0.0000000000000000000000000000000000006868 146.0
YYD1_k127_2910232_2 Transglycosylase SLT domain K08309 - - 0.000000000000000000000000000967 119.0
YYD1_k127_2910232_3 PIN domain - - - 0.0000000000000000000000009235 109.0
YYD1_k127_2910232_4 gag-polyprotein putative aspartyl protease - - - 0.0000000004718 72.0
YYD1_k127_2910232_5 Tetratricopeptide TPR_2 repeat protein - - - 0.00000002323 67.0
YYD1_k127_2922713_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 439.0
YYD1_k127_2922713_1 FecR protein - - - 0.0000000000000000000000000000000000000000000000000000000000001137 224.0
YYD1_k127_2942407_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005947 364.0
YYD1_k127_2942407_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000000005164 190.0
YYD1_k127_294462_0 Flavin containing amine oxidoreductase - - - 4.844e-205 642.0
YYD1_k127_294462_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006951 554.0
YYD1_k127_294462_2 Polysaccharide biosynthesis protein K15856 - 1.1.1.281 0.0004082 44.0
YYD1_k127_2956732_0 asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000008644 199.0
YYD1_k127_2956732_1 lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000004836 162.0
YYD1_k127_2956732_2 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000008839 156.0
YYD1_k127_2962985_0 Subtilase family K14645 GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 332.0
YYD1_k127_2962985_1 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.00000000000000000000000000000000000000000009312 170.0
YYD1_k127_2962985_2 Methylates ribosomal protein L11 K02687 - - 0.000000000000000000000000000002619 125.0
YYD1_k127_2962985_3 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000001497 53.0
YYD1_k127_2969328_0 dna ligase - - - 2.537e-215 677.0
YYD1_k127_2969328_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000001683 233.0
YYD1_k127_2969328_2 Protein of unknown function (DUF3592) - - - 0.0002837 50.0
YYD1_k127_3012941_0 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 422.0
YYD1_k127_3012941_1 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 399.0
YYD1_k127_3012941_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 335.0
YYD1_k127_3012941_3 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000004477 160.0
YYD1_k127_3012941_4 Gram-negative bacterial TonB protein C-terminal - - - 0.000000009127 66.0
YYD1_k127_3012941_5 Yip1 domain - - - 0.000005228 58.0
YYD1_k127_3017863_0 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 301.0
YYD1_k127_3017863_1 signal transduction histidine kinase - - - 0.00000000000000000004703 106.0
YYD1_k127_3026252_0 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006114 344.0
YYD1_k127_3026252_1 Secretion system protein K12511 - - 0.00000000000000000000000000000000000000000000000000000005585 208.0
YYD1_k127_3026252_2 PFAM Transglycosylase SLT domain K08309 - - 0.000000000000000000000000000000000005955 149.0
YYD1_k127_3026252_3 repeat-containing protein - - - 0.000000000000000000429 98.0
YYD1_k127_3026252_4 PFAM Type II secretion system F K12510 - - 0.0000000000004387 71.0
YYD1_k127_3026252_5 - - - - 0.000000274 55.0
YYD1_k127_3036004_0 DNA-templated transcription, initiation - - - 0.00000000000000000000000000000000000000000000000000208 196.0
YYD1_k127_3036004_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000003739 145.0
YYD1_k127_3045140_0 MacB-like periplasmic core domain - - - 7.735e-208 672.0
YYD1_k127_3045140_1 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000009244 242.0
YYD1_k127_3045140_2 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000004148 112.0
YYD1_k127_3054150_0 ABC transporter, transmembrane K18889 - - 0.000000000000000000000000000000000000000000000000000000000000004329 227.0
YYD1_k127_3054150_1 Putative cyclase K07130 - 3.5.1.9 0.0000000000000000000000000000000000000000000000000002699 192.0
YYD1_k127_3054150_2 Putative heavy-metal-binding - - - 0.0000000000000000000000000000000000000000001161 162.0
YYD1_k127_3054150_3 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000000000000000000001168 167.0
YYD1_k127_3054150_4 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000002549 94.0
YYD1_k127_3054150_5 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.000000000000000005592 89.0
YYD1_k127_3054150_6 Thioesterase superfamily K02614 - - 0.0000000000000005391 85.0
YYD1_k127_3059908_0 Tetratricopeptide repeat - - - 6.483e-199 638.0
YYD1_k127_3059908_1 epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 299.0
YYD1_k127_3059908_2 Methionine biosynthesis protein MetW - - - 0.0000000000000007544 85.0
YYD1_k127_3061009_0 ATPase activity K13527 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009788 399.0
YYD1_k127_3061009_1 WD40 repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000001046 254.0
YYD1_k127_3072118_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 415.0
YYD1_k127_3072118_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 319.0
YYD1_k127_3072118_2 4Fe-4S dicluster domain K00338 - 1.6.5.3 0.00000000000000000000000000000000000000002937 160.0
YYD1_k127_3072118_3 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000013 91.0
YYD1_k127_307641_0 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004664 319.0
YYD1_k127_307641_1 - - - - 0.000000000000000000000000000000000000000000000001649 189.0
YYD1_k127_3079513_0 efflux transmembrane transporter activity - - - 2.456e-199 650.0
YYD1_k127_3079513_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006281 567.0
YYD1_k127_3079513_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 397.0
YYD1_k127_3079513_3 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 343.0
YYD1_k127_3079513_4 efflux transmembrane transporter activity K02004 - - 0.000000803 51.0
YYD1_k127_3080669_0 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004643 287.0
YYD1_k127_3090704_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 586.0
YYD1_k127_3098185_0 PFAM Integral membrane protein TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 374.0
YYD1_k127_3098185_1 Peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000001416 110.0
YYD1_k127_3098185_2 PFAM FecR protein - - - 0.00000000007764 73.0
YYD1_k127_3101727_0 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 320.0
YYD1_k127_3101727_1 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 308.0
YYD1_k127_3101727_2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141,K19190 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019720,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061602,GO:0070567,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902759,GO:1902760 1.1.1.328,2.7.7.76 0.0000000000000000000000000000000382 133.0
YYD1_k127_3101727_3 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000008846 128.0
YYD1_k127_3101727_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000006276 87.0
YYD1_k127_3101727_5 Thioredoxin-like domain - - - 0.000000000008372 72.0
YYD1_k127_3107605_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 366.0
YYD1_k127_3107605_1 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001284 265.0
YYD1_k127_3111872_0 5'-nucleotidase, C-terminal domain K01119 - 3.1.3.6,3.1.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 493.0
YYD1_k127_3111872_1 Inner membrane component of T3SS, cytoplasmic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 453.0
YYD1_k127_3111872_2 FR47-like protein - - - 0.00000000000000000000000000000000006745 139.0
YYD1_k127_3115569_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 4.416e-305 945.0
YYD1_k127_3115569_1 PFAM peptidase - - - 4.963e-196 626.0
YYD1_k127_3115569_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000003144 209.0
YYD1_k127_3115569_3 oxidoreductase activity K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000001231 173.0
YYD1_k127_3115569_4 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000006283 134.0
YYD1_k127_3115569_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000228 46.0
YYD1_k127_3125410_0 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 376.0
YYD1_k127_3125410_1 - - - - 0.00000000000000000000000000000000000001959 154.0
YYD1_k127_3126291_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - 4.727e-281 879.0
YYD1_k127_3126291_1 ATP dependent DNA ligase C terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 560.0
YYD1_k127_3126291_2 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 329.0
YYD1_k127_3126291_3 Lipopolysaccharide kinase (Kdo/WaaP) family - - - 0.00002471 48.0
YYD1_k127_3132333_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007307 378.0
YYD1_k127_3161711_0 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 328.0
YYD1_k127_3167713_0 Putative auto-transporter adhesin, head GIN domain - - - 0.000000000000000001935 94.0
YYD1_k127_3167713_1 Protein of unknown function (DUF445) - - - 0.0000000000003734 82.0
YYD1_k127_3167713_2 Methyltransferase FkbM domain - - - 0.00000001254 58.0
YYD1_k127_3179609_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 444.0
YYD1_k127_3179609_1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 389.0
YYD1_k127_3179609_2 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001524 291.0
YYD1_k127_3179609_3 Periplasmic binding protein domain K02058,K10543 - - 0.00000000000000000000000000000000000000000000008597 173.0
YYD1_k127_3184931_0 Sortilin, neurotensin receptor 3, - - - 0.0 1137.0
YYD1_k127_3184931_1 Diacylglycerol kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001113 284.0
YYD1_k127_3192088_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1243.0
YYD1_k127_3192088_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006505 351.0
YYD1_k127_3192088_2 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002714 321.0
YYD1_k127_3192088_3 lysine biosynthetic process via aminoadipic acid - - - 0.0000000002001 66.0
YYD1_k127_3192088_4 lysine biosynthetic process via aminoadipic acid - - - 0.00006582 50.0
YYD1_k127_3197508_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 316.0
YYD1_k127_3197508_1 riboflavin synthase, alpha K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000007194 216.0
YYD1_k127_319752_0 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 341.0
YYD1_k127_319752_1 phosphoserine phosphatase activity K07315,K16928 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000001871 223.0
YYD1_k127_319752_2 araC family K13652,K13653 - - 0.00000000000000000000000001787 110.0
YYD1_k127_319752_3 Histidine kinase - - - 0.0000000000000003992 79.0
YYD1_k127_3205847_0 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 320.0
YYD1_k127_3205847_1 AMP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001766 250.0
YYD1_k127_3209490_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000007522 211.0
YYD1_k127_3209490_1 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000000000000000000004254 173.0
YYD1_k127_3212395_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 1.345e-295 927.0
YYD1_k127_3212395_1 CO dehydrogenase flavoprotein domain protein K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002898 282.0
YYD1_k127_3212395_2 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000005256 254.0
YYD1_k127_3217955_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000038 231.0
YYD1_k127_3217955_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000003372 128.0
YYD1_k127_3217955_2 - - - - 0.000000000723 69.0
YYD1_k127_3223823_0 glutamine synthetase K01915 GO:0001968,GO:0003674,GO:0003824,GO:0004356,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006541,GO:0006542,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009405,GO:0009605,GO:0009607,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016020,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019222,GO:0019752,GO:0019899,GO:0020012,GO:0030162,GO:0030312,GO:0030682,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0035375,GO:0040007,GO:0043207,GO:0043436,GO:0044044,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046394,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0070613,GO:0071704,GO:0071944,GO:0075136,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1903317,GO:1903319 6.3.1.2 2.875e-214 676.0
YYD1_k127_3223823_1 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007556 443.0
YYD1_k127_3226921_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 510.0
YYD1_k127_3226921_1 PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 452.0
YYD1_k127_3226921_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 351.0
YYD1_k127_3226921_3 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.00000000000000000000001288 106.0
YYD1_k127_3233124_0 PEP-utilising enzyme, N-terminal K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 388.0
YYD1_k127_3233124_1 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001869 260.0
YYD1_k127_3233124_2 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.00000000000000000000000000000003028 130.0
YYD1_k127_3241944_0 membrane protein, TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009424 402.0
YYD1_k127_3241944_1 - - - - 0.000000000000000000000000002341 116.0
YYD1_k127_3247288_0 Belongs to the BI1 family K06890,K19416 - - 0.0000000000000000000000000000000000000000000000000000000002011 211.0
YYD1_k127_3247288_1 Hexapeptide repeat of succinyl-transferase K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000014 177.0
YYD1_k127_3247288_2 polysaccharide deacetylase - - - 0.000000000000000000002107 106.0
YYD1_k127_3251659_0 ABC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 589.0
YYD1_k127_3251659_1 trisaccharide binding K03556 - - 0.00002192 52.0
YYD1_k127_3262223_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 351.0
YYD1_k127_3262223_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009619 316.0
YYD1_k127_3276589_0 Dienelactone hydrolase family - - - 6.555e-227 713.0
YYD1_k127_3289264_0 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 299.0
YYD1_k127_3289264_1 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000001024 134.0
YYD1_k127_3289264_2 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000002231 124.0
YYD1_k127_3289264_3 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.000000000000005147 77.0
YYD1_k127_3297927_0 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000008711 249.0
YYD1_k127_3297927_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000286 233.0
YYD1_k127_3297927_2 PFAM Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000002426 185.0
YYD1_k127_3297927_3 SMART protein phosphatase 2C domain protein - - - 0.00001148 48.0
YYD1_k127_3316199_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004029 323.0
YYD1_k127_3316199_1 Uncharacterized protein conserved in bacteria (DUF2199) - - - 0.0000000000000000000000000000000004393 142.0
YYD1_k127_3317438_0 Peptidase family M49 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 516.0
YYD1_k127_3317438_1 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 295.0
YYD1_k127_3317438_2 Aldehyde dehydrogenase family K00128,K22445 - 1.2.1.3,1.2.99.10 0.00000000000002433 76.0
YYD1_k127_3323789_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000007983 275.0
YYD1_k127_3323789_1 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.000000000000003865 81.0
YYD1_k127_3338860_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 526.0
YYD1_k127_3338860_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005789 343.0
YYD1_k127_3338860_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000002821 164.0
YYD1_k127_3338860_3 chemotaxis K03408 - - 0.0003132 49.0
YYD1_k127_3360891_0 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 376.0
YYD1_k127_3360891_1 ADP-glyceromanno-heptose 6-epimerase activity K01710,K01784,K21211 - 4.2.1.46,5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000198 254.0
YYD1_k127_3360891_2 TIGRFAM Sialic acid O-acyltransferase, NeuD - - - 0.00000000000000000000000000000000000000000000000000000000000005845 220.0
YYD1_k127_3360891_3 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000001554 157.0
YYD1_k127_3372801_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005834 426.0
YYD1_k127_3372801_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003283 263.0
YYD1_k127_3372801_2 Thioesterase superfamily K07107 - - 0.0000000000000000000002215 104.0
YYD1_k127_3372801_3 Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX K00275,K17759 GO:0003674,GO:0003824,GO:0004733,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006081,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009165,GO:0009435,GO:0009507,GO:0009536,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0016853,GO:0016854,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0031974,GO:0031981,GO:0034356,GO:0034641,GO:0034654,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0052856,GO:0052857,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5,5.1.99.6 0.00000002794 56.0
YYD1_k127_339729_0 acetyl-CoA carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 349.0
YYD1_k127_339729_1 Lysin motif - - - 0.0000000000000000000000000000000000000001219 157.0
YYD1_k127_339729_2 PFAM Haloacid dehalogenase domain protein hydrolase - - - 0.000000000000000000000000000005402 129.0
YYD1_k127_339729_3 Biotin-requiring enzyme - - - 0.00000000000000000002663 97.0
YYD1_k127_3397856_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 3.024e-213 676.0
YYD1_k127_3397856_1 HELICc2 K03722 - 3.6.4.12 5.192e-196 631.0
YYD1_k127_3397856_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008304 553.0
YYD1_k127_3397856_3 ribose 5-phosphate isomerase B K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000001201 174.0
YYD1_k127_3397856_4 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000007983 136.0
YYD1_k127_3397856_5 PFAM Acyltransferase - - - 0.0000000000000000000000001754 120.0
YYD1_k127_3400472_0 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 426.0
YYD1_k127_3400472_1 Binding-protein-dependent transport system inner membrane component K02050,K15554 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 288.0
YYD1_k127_3400472_2 anion transmembrane transporter activity K02049,K15555,K15558 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008623 279.0
YYD1_k127_3400472_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000004143 85.0
YYD1_k127_3427585_0 Peptidase family M28 - - - 3.511e-210 668.0
YYD1_k127_3427585_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009126 525.0
YYD1_k127_3427585_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000002425 245.0
YYD1_k127_3436419_0 CO dehydrogenase flavoprotein C-terminal domain K11178 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 296.0
YYD1_k127_3436419_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K11177 - 1.17.1.4 0.000000000000000000000000000000000001687 142.0
YYD1_k127_3436419_2 Protein of unknown function (DUF1326) - - - 0.00000000000000000002415 99.0
YYD1_k127_3439205_0 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 416.0
YYD1_k127_3439205_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 291.0
YYD1_k127_3439205_2 - - - - 0.000000000000000000000000000000000000000000000000000000003054 205.0
YYD1_k127_3439205_3 iron-nicotianamine transmembrane transporter activity - GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - 0.000000000000000000000000000000000000000000000000000002579 194.0
YYD1_k127_3439205_4 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.00000000000000000003841 94.0
YYD1_k127_3439205_5 diamine N-acetyltransferase activity K00657 GO:0001525,GO:0001568,GO:0001944,GO:0003674,GO:0003824,GO:0004145,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006598,GO:0006807,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0009056,GO:0009058,GO:0009308,GO:0009309,GO:0009310,GO:0009653,GO:0009987,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019808,GO:0019809,GO:0032501,GO:0032502,GO:0032917,GO:0032918,GO:0034641,GO:0035239,GO:0035295,GO:0042127,GO:0042401,GO:0042402,GO:0042737,GO:0042802,GO:0043167,GO:0043169,GO:0044106,GO:0044237,GO:0044248,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046208,GO:0048514,GO:0048646,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070405,GO:0071704,GO:0072358,GO:0072359,GO:0097164,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 2.3.1.57 0.0000000000000000003019 97.0
YYD1_k127_3441333_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 377.0
YYD1_k127_3441333_1 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000001004 187.0
YYD1_k127_3441333_2 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000001019 100.0
YYD1_k127_3445911_0 amino acid transport K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 430.0
YYD1_k127_3445911_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 422.0
YYD1_k127_3445911_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 397.0
YYD1_k127_3445911_3 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K04105,K04110 - 6.2.1.25,6.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 311.0
YYD1_k127_3445911_4 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000001198 225.0
YYD1_k127_3448426_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 476.0
YYD1_k127_3448426_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 363.0
YYD1_k127_3448426_2 Peptidase family S41 - - - 0.00000000000001262 81.0
YYD1_k127_3463587_0 Unusual protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003567 354.0
YYD1_k127_3463587_1 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000001055 259.0
YYD1_k127_3463587_2 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000006323 236.0
YYD1_k127_3463587_3 CHRD domain - - - 0.00000000000000000000000000000000058 136.0
YYD1_k127_3463587_4 PFAM MazG nucleotide pyrophosphohydrolase K02428,K02499 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0022607,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0042454,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044464,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0047693,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.66 0.0000000000000000357 82.0
YYD1_k127_3463587_5 Domain of unknown function (DUF1844) - - - 0.0000000000004037 76.0
YYD1_k127_3480059_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 494.0
YYD1_k127_3480059_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007343 346.0
YYD1_k127_3480059_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004103 294.0
YYD1_k127_3480059_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005039 284.0
YYD1_k127_3480059_4 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000001656 172.0
YYD1_k127_3485558_0 ABC transporter transmembrane region K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 552.0
YYD1_k127_3485558_1 ABC transporter, transmembrane K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 359.0
YYD1_k127_3485558_2 Beta-lactamase - - - 0.0003627 47.0
YYD1_k127_351347_0 protoporphyrinogen oxidase activity K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003834 468.0
YYD1_k127_351347_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 435.0
YYD1_k127_351347_2 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000000000000000000000000000006479 215.0
YYD1_k127_351347_3 Domain of unknown function (DUF4440) - - - 0.0000002657 57.0
YYD1_k127_3517460_0 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 327.0
YYD1_k127_3517460_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 297.0
YYD1_k127_3517460_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.0000000000000000000000000000000000000000000000000007354 190.0
YYD1_k127_3517460_3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000003456 161.0
YYD1_k127_352156_0 A-macroglobulin receptor - - - 0.0000000000000000000000000000000000000000000000001219 204.0
YYD1_k127_3546219_0 Trm112p-like protein K09791 - - 0.00000000000000000000001246 101.0
YYD1_k127_3546219_1 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000006349 90.0
YYD1_k127_3546219_2 peptidyl-tyrosine sulfation - - - 0.0000000008085 64.0
YYD1_k127_3546219_3 Domain of unknown function (DUF4388) - - - 0.0000007489 60.0
YYD1_k127_3554332_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 403.0
YYD1_k127_3554332_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 374.0
YYD1_k127_3554332_2 PFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000003921 239.0
YYD1_k127_3554332_3 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 GO:0000726,GO:0003674,GO:0003824,GO:0003953,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006464,GO:0006471,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016787,GO:0016798,GO:0016799,GO:0019213,GO:0019538,GO:0030312,GO:0033554,GO:0033558,GO:0034641,GO:0034979,GO:0035601,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070213,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071944,GO:0090304,GO:0098732,GO:0104004,GO:0140096,GO:1901360,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000005506 221.0
YYD1_k127_3563903_0 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000002821 254.0
YYD1_k127_3563903_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000385 167.0
YYD1_k127_3563903_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000005835 88.0
YYD1_k127_3579603_0 deoxyhypusine monooxygenase activity - - - 0.00007461 51.0
YYD1_k127_3583591_0 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000005773 222.0
YYD1_k127_3583591_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000004565 168.0
YYD1_k127_3583591_2 Peptidase, M23 family - - - 0.0000000000000000001033 98.0
YYD1_k127_3583591_3 Hsp20/alpha crystallin family K13993 - - 0.00000000003407 70.0
YYD1_k127_3583591_4 - - - - 0.0000000006087 70.0
YYD1_k127_3583591_5 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000341 66.0
YYD1_k127_3583591_6 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0001843 46.0
YYD1_k127_3583591_7 Putative zinc-finger - - - 0.0008033 50.0
YYD1_k127_3599617_0 actin binding - - - 0.000000000000000000000000000000000000000000000000000007842 207.0
YYD1_k127_3599617_1 DinB superfamily - - - 0.0000000000000000000000000000000000000000005105 163.0
YYD1_k127_3599617_2 gluconolactonase activity K14274,K20274 - - 0.00000002521 64.0
YYD1_k127_3640942_0 Dienelactone hydrolase family - - - 1.694e-287 904.0
YYD1_k127_3640942_1 Belongs to the UPF0102 family K07460 - - 0.00000000000000214 82.0
YYD1_k127_3650336_0 Heat shock 70 kDa protein K04043 - - 2.06e-294 915.0
YYD1_k127_3650336_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 302.0
YYD1_k127_3650336_2 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000000001296 128.0
YYD1_k127_3652688_0 VWA domain containing CoxE-like protein K07161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 355.0
YYD1_k127_3652688_1 Associated with various cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003475 265.0
YYD1_k127_3668621_0 Inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000139 267.0
YYD1_k127_3668621_1 esterase - - - 0.0000000000000000000000000000000000000000001995 171.0
YYD1_k127_372478_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 426.0
YYD1_k127_372478_1 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002579 292.0
YYD1_k127_372478_2 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000002894 204.0
YYD1_k127_372478_3 Trypsin-like serine protease - - - 0.0000000118 62.0
YYD1_k127_3740837_0 Major facilitator Superfamily K08223 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 324.0
YYD1_k127_3740837_2 Protein of unknown function (DUF861) - - - 0.0000003022 54.0
YYD1_k127_3761078_0 NADH oxidase - - - 5.16e-204 645.0
YYD1_k127_3761078_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K04105,K04110 - 6.2.1.25,6.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 514.0
YYD1_k127_3761078_2 Aminotransferase class-V K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009973 460.0
YYD1_k127_3761078_3 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 411.0
YYD1_k127_3761078_4 PAS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001053 297.0
YYD1_k127_3761078_5 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.00000000000000000000000000000000000000000000000000000000001373 216.0
YYD1_k127_3761078_6 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000001898 107.0
YYD1_k127_3761078_7 Thioesterase-like superfamily K01075 - 3.1.2.23 0.0000000000000000004014 92.0
YYD1_k127_37723_0 Prolyl oligopeptidase family - - - 8.664e-196 632.0
YYD1_k127_37723_1 SnoaL-like domain - - - 0.0000000000000000000000000000000000000000000000006233 177.0
YYD1_k127_37723_3 Forkhead associated domain - - - 0.000000000000000000000000000000000002517 156.0
YYD1_k127_37723_4 Ferredoxin - - - 0.000000000000000000000001013 108.0
YYD1_k127_377794_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007151 312.0
YYD1_k127_377794_1 benzoyl-CoA reductase K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 300.0
YYD1_k127_377794_10 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000002774 52.0
YYD1_k127_377794_2 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001756 270.0
YYD1_k127_377794_3 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000047 253.0
YYD1_k127_377794_4 NAD dependent epimerase/dehydratase family K07535 - - 0.000000000000000000000000000000000000000000000000000000000000000002168 235.0
YYD1_k127_377794_5 PFAM BadF BadG BcrA BcrD ATPase family - - - 0.000000000000000000000000000000000000000000000000000000004121 209.0
YYD1_k127_377794_6 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000005212 208.0
YYD1_k127_377794_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000003903 115.0
YYD1_k127_377794_8 AMP binding - - - 0.00000000000000009104 91.0
YYD1_k127_377794_9 Universal stress protein - - - 0.0000000002122 72.0
YYD1_k127_3790623_0 PFAM Type II secretion system protein E K02652 - - 9.928e-217 686.0
YYD1_k127_3790623_1 Belongs to the GSP D family K02453 - - 0.0000000000000000000000000000000000000000002605 182.0
YYD1_k127_3790623_2 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000007446 143.0
YYD1_k127_3790623_3 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000003375 122.0
YYD1_k127_3790623_4 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000001829 123.0
YYD1_k127_3790623_5 Pilus assembly protein K02662 - - 0.000003879 58.0
YYD1_k127_3812319_0 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000004121 137.0
YYD1_k127_3812319_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.15 0.00000000000003169 75.0
YYD1_k127_3812319_2 Lipopolysaccharide-assembly - - - 0.0000000000001936 78.0
YYD1_k127_3813363_0 COG1131 ABC-type multidrug transport system, ATPase component K01990,K19340 - - 0.00000000000000000000000000000000000000000001064 174.0
YYD1_k127_3813363_1 NosL K19342 - - 0.0000000000000000000000009235 109.0
YYD1_k127_3813363_2 ABC-2 family transporter protein K19341 - - 0.00000000000009751 73.0
YYD1_k127_3824062_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000299 341.0
YYD1_k127_3824062_1 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000003122 129.0
YYD1_k127_3831187_0 Aldehyde oxidase and xanthine dehydrogenase a b hammerhead K03520,K11177 - 1.17.1.4,1.2.5.3 0.0 1311.0
YYD1_k127_3831187_1 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000007161 243.0
YYD1_k127_3836764_0 gluconolactonase activity K14274,K20274 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 355.0
YYD1_k127_3842861_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 427.0
YYD1_k127_3842861_1 Domain of unknown function (DUF4349) - - - 0.000000000000000000000000001796 123.0
YYD1_k127_3842861_2 PAS fold - - - 0.0000000000000000000008417 96.0
YYD1_k127_3842861_3 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 0.000000000000000007139 90.0
YYD1_k127_3842861_4 PFAM von Willebrand factor type A - - - 0.0000001224 58.0
YYD1_k127_3852911_0 NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 538.0
YYD1_k127_3852911_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 496.0
YYD1_k127_3852911_2 Proton-conducting membrane transporter K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000004899 192.0
YYD1_k127_3855153_0 ABC transporter K10441 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 582.0
YYD1_k127_3855153_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009815 434.0
YYD1_k127_3855153_2 CobQ CobB MinD ParA nucleotide binding domain K08252,K13661,K16554,K16692 - 2.7.10.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001899 366.0
YYD1_k127_3855153_3 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.00000000000000003861 85.0
YYD1_k127_3855153_4 HPr kinase - - - 0.00000001777 62.0
YYD1_k127_385518_0 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 381.0
YYD1_k127_385518_1 4Fe-4S single cluster domain of Ferredoxin I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 334.0
YYD1_k127_385518_2 Histidine kinase - - - 0.000000000000000000000000000000000002743 149.0
YYD1_k127_3872417_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009785 368.0
YYD1_k127_3872417_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007895 284.0
YYD1_k127_3872417_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000007065 205.0
YYD1_k127_3872417_3 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000001819 159.0
YYD1_k127_3872417_4 Ribosomal protein L35 K02916 - - 0.0000000000000000002331 89.0
YYD1_k127_3872417_5 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000001451 79.0
YYD1_k127_3872417_6 Redoxin - - - 0.000006607 56.0
YYD1_k127_3874116_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 363.0
YYD1_k127_3874116_1 Cell division protein ftsk K03466 - - 0.000000000001133 79.0
YYD1_k127_3880432_0 MacB-like periplasmic core domain - - - 1.117e-200 655.0
YYD1_k127_3880432_1 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000004418 133.0
YYD1_k127_3880432_2 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000009349 136.0
YYD1_k127_3897806_0 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004695 286.0
YYD1_k127_3897806_1 B3/4 domain K01890 - 6.1.1.20 0.0000000000000000000000000000000000000001479 160.0
YYD1_k127_3897806_2 COG0457 FOG TPR repeat - - - 0.00000000000000000004592 94.0
YYD1_k127_3897806_3 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000134 55.0
YYD1_k127_3903307_0 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 503.0
YYD1_k127_3903307_1 Aerotolerance regulator N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009967 261.0
YYD1_k127_390471_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 627.0
YYD1_k127_390471_1 COG2273 Beta-glucanase Beta-glucan synthetase - - - 0.000000000000000000000000000000000004536 141.0
YYD1_k127_390471_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000781 134.0
YYD1_k127_3914102_0 His Kinase A (phosphoacceptor) domain - - - 1.036e-211 692.0
YYD1_k127_3914102_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 452.0
YYD1_k127_3920614_0 histidine kinase A domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000009367 150.0
YYD1_k127_3920614_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000004559 136.0
YYD1_k127_3920614_2 phosphorelay signal transduction system K02667 - - 0.0000000000000000000000004003 114.0
YYD1_k127_3920614_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000001054 95.0
YYD1_k127_3934327_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 1.909e-283 885.0
YYD1_k127_3934327_1 DEAD DEAH box helicase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002049 246.0
YYD1_k127_3934327_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000002599 50.0
YYD1_k127_3935507_0 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000007203 187.0
YYD1_k127_3935507_1 PFAM von Willebrand factor type A - - - 0.00000000000000000000000000000111 134.0
YYD1_k127_3935507_2 - - - - 0.0000000000000000001294 91.0
YYD1_k127_3949477_0 PFAM Peptidase S10, serine carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 549.0
YYD1_k127_3949477_1 Permease for cytosine/purines, uracil, thiamine, allantoin K03457 - - 0.000000000000000000000000000000000000000000000000000000000000000000008506 238.0
YYD1_k127_3949477_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000006171 211.0
YYD1_k127_3949477_3 Amidohydrolase family K01464 - 3.5.2.2 0.00000000000000000000000000000000000001476 146.0
YYD1_k127_3949477_4 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000158 114.0
YYD1_k127_4003518_0 Radical SAM superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006299 260.0
YYD1_k127_4023675_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 402.0
YYD1_k127_4023675_1 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 377.0
YYD1_k127_4023675_2 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000742 365.0
YYD1_k127_4023675_3 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001202 286.0
YYD1_k127_4023675_4 glycyl-tRNA aminoacylation K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000186 246.0
YYD1_k127_4023675_5 Acyl-CoA dehydrogenase, C-terminal domain K16173 - 1.3.99.32 0.000000000000000000002283 95.0
YYD1_k127_4023675_6 - - - - 0.00000000000001533 76.0
YYD1_k127_4023675_7 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0001013 51.0
YYD1_k127_4052809_0 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 502.0
YYD1_k127_4052809_1 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000003192 154.0
YYD1_k127_4054347_0 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701 402.0
YYD1_k127_4054347_1 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009721 392.0
YYD1_k127_4054347_2 PFAM Abortive infection protein K07052 - - 0.0007567 47.0
YYD1_k127_4058766_0 Cell division protein FtsI penicillin-binding protein K05364 - - 0.0000000000000000000000000000000000001327 162.0
YYD1_k127_4058766_1 Protein of unknown function (DUF2662) - - - 0.0000000001016 72.0
YYD1_k127_4076986_0 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005187 333.0
YYD1_k127_4076986_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007757 320.0
YYD1_k127_4076986_2 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002607 249.0
YYD1_k127_4076986_3 Biotin-lipoyl like K02005 - - 0.00000000000000000000000000000000000000000000000000000004158 215.0
YYD1_k127_4134165_0 Peptidase M16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 326.0
YYD1_k127_4134165_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 316.0
YYD1_k127_4134165_2 Zn peptidase K21686 - - 0.0000000000000000000000004654 113.0
YYD1_k127_4134165_3 Peptidase M16 K07263 - - 0.000000000000005775 81.0
YYD1_k127_4134165_5 cellular response to DNA damage stimulus K07340 - - 0.0000001807 55.0
YYD1_k127_4134165_6 sequence-specific DNA binding - - - 0.000006735 53.0
YYD1_k127_413666_0 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 520.0
YYD1_k127_413666_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000247 362.0
YYD1_k127_4138276_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 3.395e-233 731.0
YYD1_k127_4138276_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 4.866e-210 670.0
YYD1_k127_4138276_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000001388 127.0
YYD1_k127_4138276_11 FAD binding domain - - - 0.000000000000000000000000001519 121.0
YYD1_k127_4138276_12 VanZ like family - - - 0.000000000000000000005928 98.0
YYD1_k127_4138276_13 PFAM Single-stranded nucleic acid binding R3H K06346 - - 0.0000000000000000002618 93.0
YYD1_k127_4138276_14 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000364 71.0
YYD1_k127_4138276_15 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0002915 49.0
YYD1_k127_4138276_16 ATP synthase B/B' CF(0) K02109 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0005841 49.0
YYD1_k127_4138276_2 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007551 490.0
YYD1_k127_4138276_3 SPFH domain-Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 443.0
YYD1_k127_4138276_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 389.0
YYD1_k127_4138276_5 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 307.0
YYD1_k127_4138276_6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 306.0
YYD1_k127_4138276_7 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006742 266.0
YYD1_k127_4138276_8 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000004385 218.0
YYD1_k127_4138276_9 Methyltransferase domain - - - 0.000000000000000000000000000000006205 137.0
YYD1_k127_4163683_0 Belongs to the KdsA family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 332.0
YYD1_k127_4163683_1 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000356 112.0
YYD1_k127_4177820_0 Amidase K01426 - 3.5.1.4 8.884e-208 659.0
YYD1_k127_4177820_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006728 446.0
YYD1_k127_4177820_2 Domain of unknown function (DUF4287) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005445 248.0
YYD1_k127_4177820_3 glyoxalase III activity - - - 0.0000000000000000000000000000000000000000000000000000000006447 207.0
YYD1_k127_4177820_4 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000001162 96.0
YYD1_k127_4177820_5 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.00003593 53.0
YYD1_k127_4184066_0 NADPH quinone reductase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 444.0
YYD1_k127_4184066_1 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 294.0
YYD1_k127_4184066_2 Quinone oxidoreductase K00344 - 1.6.5.5 0.0000000000009499 70.0
YYD1_k127_4205998_0 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 554.0
YYD1_k127_4205998_1 PFAM monooxygenase FAD-binding - - - 0.000000000000000000000000000000000000000000000000000004254 199.0
YYD1_k127_4232006_0 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 459.0
YYD1_k127_4232006_1 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.00000000000000000000000000000000000000000000000000000000000004237 223.0
YYD1_k127_4232006_2 PFAM Abortive infection protein K07052 - - 0.000000000000000000000000000865 119.0
YYD1_k127_4252518_0 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 374.0
YYD1_k127_4252518_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000001285 226.0
YYD1_k127_42647_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5,6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005197 460.0
YYD1_k127_42647_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 341.0
YYD1_k127_42647_3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.0000000000000000000000000000000000006862 160.0
YYD1_k127_42647_4 Polymer-forming cytoskeletal - - - 0.00000000000000003665 89.0
YYD1_k127_4279004_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 2.33e-222 716.0
YYD1_k127_4279004_1 Isochorismatase family - - - 0.0000000000000000000000000000000000000000001906 164.0
YYD1_k127_4279004_2 Involved in the adaptive response to alkylation damage in DNA caused by alkylating agents. Repairs O6-methylguanine (O6- MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme (Cys-321). Also specifically repairs the Sp diastereomer of DNA methylphosphotriester lesions by the same mechanism, although the methyl transfer occurs onto a different cysteine residue (Cys-38). Cannot demethylate the other diastereomer, Rp- methylphosphotriester. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 GO:0001130,GO:0003674,GO:0003700,GO:0003824,GO:0003908,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016740,GO:0016741,GO:0018125,GO:0018193,GO:0018198,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044728,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070988,GO:0071704,GO:0080090,GO:0080111,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 2.1.1.63 0.0008007 44.0
YYD1_k127_4280458_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 292.0
YYD1_k127_4280458_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001299 279.0
YYD1_k127_4280458_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K06878 - - 0.00000000000000000000000000000000000000000001015 165.0
YYD1_k127_4280458_3 Mo-molybdopterin cofactor biosynthetic process - - - 0.0000000000000000000000000001268 120.0
YYD1_k127_4280458_4 PFAM nucleoside H symporter - - - 0.0000000000001835 74.0
YYD1_k127_4316114_0 formate C-acetyltransferase glycine radical K00656 - 2.3.1.54 0.0 1243.0
YYD1_k127_4316114_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006938 569.0
YYD1_k127_4316114_2 Asparaginase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000768 505.0
YYD1_k127_4316114_3 Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 334.0
YYD1_k127_4316114_4 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000011 244.0
YYD1_k127_4318911_0 cellulose binding - - - 0.0 1231.0
YYD1_k127_4324333_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 417.0
YYD1_k127_4324333_1 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007084 303.0
YYD1_k127_4324333_10 zinc-ribbon domain - - - 0.000321 51.0
YYD1_k127_4324333_11 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0005579 50.0
YYD1_k127_4324333_2 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005785 311.0
YYD1_k127_4324333_3 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007435 272.0
YYD1_k127_4324333_4 COG1230 Co Zn Cd efflux system component K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001793 259.0
YYD1_k127_4324333_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000006012 167.0
YYD1_k127_4324333_6 HD domain K07023 - - 0.00000000000000000000000000000000003983 142.0
YYD1_k127_4324333_7 - - - - 0.000000000000000000000000005049 115.0
YYD1_k127_4324333_8 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000104 79.0
YYD1_k127_4328208_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 336.0
YYD1_k127_4328208_1 PFAM Pyridoxal-dependent decarboxylase conserved domain K01580,K01593,K13745 - 4.1.1.105,4.1.1.15,4.1.1.28,4.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000005531 246.0
YYD1_k127_4328208_2 membrane - - - 0.00000000000000000000000000000002254 128.0
YYD1_k127_4328208_3 Transposase IS200 like - - - 0.0000000000000000000000000000001552 129.0
YYD1_k127_4328208_4 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000005328 108.0
YYD1_k127_4334207_0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 316.0
YYD1_k127_4334207_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000002444 276.0
YYD1_k127_4340716_0 glycosyl hydrolase, family 3 K05349 - 3.2.1.21 7.217e-309 960.0
YYD1_k127_4340716_1 PFAM glycoside hydrolase, family 29 K01206 - 3.2.1.51 5.23e-196 619.0
YYD1_k127_4340716_2 amidohydrolase K07046 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 291.0
YYD1_k127_4340716_3 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000227 192.0
YYD1_k127_4351663_0 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 498.0
YYD1_k127_4351663_2 PFAM Cyclic nucleotide-binding - - - 0.000000000000000000000000000000114 128.0
YYD1_k127_4380016_0 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000003783 130.0
YYD1_k127_439414_0 TIGRFAM acetaldehyde dehydrogenase (acetylating) K00132 - 1.2.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 298.0
YYD1_k127_439414_1 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.000000000000000000000000009307 115.0
YYD1_k127_4407394_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000001521 226.0
YYD1_k127_4415518_0 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 384.0
YYD1_k127_4431598_0 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 395.0
YYD1_k127_4431598_1 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 359.0
YYD1_k127_4431598_2 snoRNA binding - - - 0.0000000003384 66.0
YYD1_k127_4431598_3 - - - - 0.000000009094 61.0
YYD1_k127_4438104_0 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009017 606.0
YYD1_k127_4438104_1 Glycosyl transferase, family 2 K00721 GO:0000271,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0030258,GO:0030259,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.4.1.83 0.0000000000000000000000000000000000002458 144.0
YYD1_k127_4455126_0 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 338.0
YYD1_k127_4455126_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000000000000000000000000000002687 263.0
YYD1_k127_4455126_2 surface antigen variable number - - - 0.00000000000000000000000000000000000000000000000000000000000004566 244.0
YYD1_k127_4455126_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000003021 186.0
YYD1_k127_4455126_4 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 GO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000002291 166.0
YYD1_k127_4455126_5 peptidylprolyl isomerase K03771 - 5.2.1.8 0.0000001696 61.0
YYD1_k127_4475402_0 PFAM Beta-eliminating lyase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 436.0
YYD1_k127_4475402_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 413.0
YYD1_k127_4475402_2 Belongs to the FGGY kinase family K00851 - 2.7.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004189 391.0
YYD1_k127_4475402_3 Transcription factor zinc-finger - - - 0.0000000000000000000000000000000000000000000000000000000000844 212.0
YYD1_k127_4490265_0 imidazolonepropionase activity K00466 - 1.13.12.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 547.0
YYD1_k127_4490265_1 PFAM aminotransferase, class I K10907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007833 529.0
YYD1_k127_4490265_10 PFAM Tetratricopeptide repeat - - - 0.0003491 52.0
YYD1_k127_4490265_2 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 399.0
YYD1_k127_4490265_3 DSHCT - - - 0.000000000000000000000000000000000000000000000000000000000000006156 239.0
YYD1_k127_4490265_4 Transglycosylase SLT domain K08309 - - 0.00000000000000000000000000000000000000000000000000000000000004635 240.0
YYD1_k127_4490265_5 cheY-homologous receiver domain K11443 - - 0.00000000000000000000000001247 113.0
YYD1_k127_4490265_6 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000009633 104.0
YYD1_k127_4490265_7 nuclear chromosome segregation - - - 0.000000000000000000007037 106.0
YYD1_k127_4490265_8 von Willebrand factor, type A - - - 0.000000000000006439 76.0
YYD1_k127_4490265_9 TIGRFAM TonB K03832 - - 0.000001944 59.0
YYD1_k127_4493791_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2021.0
YYD1_k127_4493791_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1923.0
YYD1_k127_4493791_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000002209 198.0
YYD1_k127_4493791_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000001336 79.0
YYD1_k127_449716_0 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 437.0
YYD1_k127_449716_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000312 283.0
YYD1_k127_449716_2 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000003684 167.0
YYD1_k127_449716_3 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000003309 141.0
YYD1_k127_449716_4 Psort location CytoplasmicMembrane, score - - - 0.000000000003041 78.0
YYD1_k127_449716_5 PFAM O-antigen polymerase - - - 0.00000001823 63.0
YYD1_k127_4499472_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.117e-202 644.0
YYD1_k127_4503353_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009389 347.0
YYD1_k127_4529264_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000001592 212.0
YYD1_k127_4568462_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000006976 172.0
YYD1_k127_4568462_1 Polysaccharide biosynthesis protein - - - 0.000000000000001848 84.0
YYD1_k127_4568462_2 guanyl-nucleotide exchange factor activity K01179,K03929,K09612,K12287,K19701,K19702 GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005623,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.2.1.4,3.4.11.10,3.4.11.24,3.4.11.6 0.00000000006004 76.0
YYD1_k127_4594099_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 399.0
YYD1_k127_4594099_1 metal-dependent phosphohydrolase, HD sub domain K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 305.0
YYD1_k127_4594099_2 Calcineurin-like phosphoesterase superfamily domain K07313 - 3.1.3.16 0.00000000000000000000000000000000008808 141.0
YYD1_k127_4594099_3 phosphohistidine phosphatase K08296 - - 0.0000000000000000000000000000000004128 138.0
YYD1_k127_4594099_4 PFAM CHAD domain containing protein - - - 0.0000000000000000001298 100.0
YYD1_k127_4597090_0 TIGRFAM iron-sulfur cluster binding protein K18929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 476.0
YYD1_k127_4597090_1 PFAM Alcohol dehydrogenase GroES-like domain K00008,K00060 - 1.1.1.103,1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005924 461.0
YYD1_k127_4597090_2 Periplasmic binding proteins and sugar binding domain of LacI family K10439,K10552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 455.0
YYD1_k127_4597090_3 Cysteine-rich domain K18928 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002509 284.0
YYD1_k127_4597090_4 Fumarylacetoacetate (FAA) hydrolase family K01826 - 5.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000001954 272.0
YYD1_k127_4597090_5 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000004357 121.0
YYD1_k127_4597090_6 Pfam:DUF162 K00782 - - 0.00000000000000000000001721 110.0
YYD1_k127_4597090_7 Branched-chain amino acid transport system / permease component K10440,K10553 - - 0.0006046 44.0
YYD1_k127_4607997_0 von Willebrand factor, type A K07114 - - 8.465e-198 632.0
YYD1_k127_4607997_1 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 318.0
YYD1_k127_4607997_2 N,N-dimethylaniline monooxygenase activity - - - 0.00000000000000000000000000000000000000003572 155.0
YYD1_k127_4607997_3 - - - - 0.000000000000000002822 94.0
YYD1_k127_4611982_0 Peptidase family M3 K01284 - 3.4.15.5 0.0 1031.0
YYD1_k127_4611982_1 SnoaL-like domain K06893 - - 0.000000000000000000000000000000003267 133.0
YYD1_k127_4630754_0 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 419.0
YYD1_k127_4630754_1 PFAM phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 393.0
YYD1_k127_4630754_10 response regulator, receiver - - - 0.00000000000008715 76.0
YYD1_k127_4630754_2 Fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009726 355.0
YYD1_k127_4630754_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 309.0
YYD1_k127_4630754_4 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004212 279.0
YYD1_k127_4630754_5 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000806 239.0
YYD1_k127_4630754_6 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000002709 213.0
YYD1_k127_4630754_7 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000001308 183.0
YYD1_k127_4630754_8 Probable zinc-ribbon domain - - - 0.00000000000000000008979 93.0
YYD1_k127_4630754_9 ABC-type multidrug transport system ATPase component - - - 0.0000000000000000001538 100.0
YYD1_k127_4648900_0 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 375.0
YYD1_k127_4648900_1 Actin K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002225 269.0
YYD1_k127_4648900_2 Hemerythrin hhe cation binding - - - 0.00000000000000000000000000000000002975 141.0
YYD1_k127_4648900_3 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000006376 115.0
YYD1_k127_4648900_4 - - - - 0.000000000000002503 78.0
YYD1_k127_4648900_5 - - - - 0.0000001712 53.0
YYD1_k127_4649933_0 protease with the C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 497.0
YYD1_k127_4649933_1 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006185 300.0
YYD1_k127_4649933_2 Enoyl-CoA hydratase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000000000000000001152 228.0
YYD1_k127_4649933_3 TIGRFAM thioredoxin K03672 - 1.8.1.8 0.0000000000000000000000000000000000000000000001439 172.0
YYD1_k127_4649933_4 Protein of unknown function (DUF2905) - - - 0.000000000000000007915 85.0
YYD1_k127_4669103_0 Heat shock 70 kDa protein K04043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 502.0
YYD1_k127_4669103_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0006457,GO:0008150,GO:0009987 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 294.0
YYD1_k127_4691655_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 492.0
YYD1_k127_4691655_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 472.0
YYD1_k127_4691655_2 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 336.0
YYD1_k127_4691655_3 thymidine kinase activity K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000568 228.0
YYD1_k127_4691655_4 COG0859 ADP-heptose LPS heptosyltransferase K02841,K02849 - - 0.000000000000000000000000000004043 132.0
YYD1_k127_4691655_5 Protein of unknown function DUF84 - GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0017144,GO:0034641,GO:0042723,GO:0044237,GO:0044281,GO:0046483,GO:0071704,GO:0072527,GO:1901360,GO:1901564 - 0.00000000000000000000001151 111.0
YYD1_k127_4691655_6 PFAM Cyclic nucleotide-binding - - - 0.000000007683 67.0
YYD1_k127_4691655_7 self proteolysis - - - 0.0000007024 61.0
YYD1_k127_4691655_8 Belongs to the peptidase S8 family - - - 0.0002198 49.0
YYD1_k127_4695928_0 Transporter, small conductance mechanosensitive ion channel MscS family protein K03442 - - 0.000000000000000000000000000000000000000000000000000000009833 209.0
YYD1_k127_4695928_1 Bacterial regulatory proteins, tetR family K13770 - - 0.00000000000000000000000000000000000000000000000009273 184.0
YYD1_k127_4695928_2 Predicted membrane protein (DUF2339) - - - 0.000000000000000000511 96.0
YYD1_k127_4695928_3 Transposase IS200 like - - - 0.000000000000000000629 93.0
YYD1_k127_4710501_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000006731 262.0
YYD1_k127_4710501_1 Disulphide isomerase - - - 0.000000000000000000000000000000000000000000000000000006068 192.0
YYD1_k127_4710501_2 - - - - 0.0000000000000000000000000000002201 128.0
YYD1_k127_4710501_3 PFAM Uncharacterised protein family UPF0079, ATPase K06925 - - 0.0000000000000000000000003329 111.0
YYD1_k127_4736602_0 Male sterility protein K01897 - 6.2.1.3 0.0 1307.0
YYD1_k127_4736602_1 Domain of unknown function (DUF2088) - - - 9.628e-229 721.0
YYD1_k127_4736602_2 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006695 243.0
YYD1_k127_4736602_3 Tetratricopeptide repeat - - - 0.0000000000000000000182 98.0
YYD1_k127_4754235_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679,K01744 - 4.2.1.2,4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 609.0
YYD1_k127_4754235_1 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000001402 125.0
YYD1_k127_4754235_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000004698 122.0
YYD1_k127_4754235_3 4Fe-4S single cluster domain of Ferredoxin I - - - 0.0000000000000000000000000181 111.0
YYD1_k127_4754235_4 Rieske-like [2Fe-2S] domain K05710 - - 0.000000000000000003447 90.0
YYD1_k127_4754235_5 to GP 1890198 percent identity - - - 0.00004626 46.0
YYD1_k127_4756150_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0 1032.0
YYD1_k127_4756150_1 - - - - 0.000000000005333 74.0
YYD1_k127_4756150_2 NAD-dependent epimerase dehydratase K05281 - 1.3.1.45 0.000001181 53.0
YYD1_k127_4790257_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 340.0
YYD1_k127_4790257_1 Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction K08482 - - 0.00000008272 60.0
YYD1_k127_479451_0 carbohydrate transport K10544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 426.0
YYD1_k127_479451_1 Belongs to the glycosyl hydrolase 26 family - - - 0.000000000000000001491 93.0
YYD1_k127_4801375_0 Alpha/beta hydrolase family - - - 6.217e-277 869.0
YYD1_k127_4805241_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.746e-210 663.0
YYD1_k127_4812475_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 1.558e-214 674.0
YYD1_k127_4812475_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000004502 164.0
YYD1_k127_4812475_2 helix_turn_helix, arabinose operon control protein K07506 - - 0.00000000000000000000002016 110.0
YYD1_k127_4822806_0 PFAM Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 501.0
YYD1_k127_4822806_1 Alpha-2-Macroglobulin K06894 - - 0.00000000000000000000000000000000000001251 147.0
YYD1_k127_4822806_2 - K05826 - - 0.000000004176 60.0
YYD1_k127_4825487_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 3.88e-270 852.0
YYD1_k127_4825487_1 Pectate lyase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 615.0
YYD1_k127_4825487_2 Transcriptional regulator, LysR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 329.0
YYD1_k127_4825487_3 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000002104 166.0
YYD1_k127_4825487_4 PFAM PemK-like protein K07171 - - 0.000000000000000000000000006229 114.0
YYD1_k127_4825487_5 - - - - 0.00008068 48.0
YYD1_k127_4844321_0 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002008 267.0
YYD1_k127_4844321_1 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000007427 146.0
YYD1_k127_4877406_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 613.0
YYD1_k127_4877406_1 PFAM Respiratory-chain NADH dehydrogenase 24 Kd subunit - - - 0.000000000661 61.0
YYD1_k127_488408_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 426.0
YYD1_k127_488408_1 Metalloenzyme superfamily - - - 0.00000000000000000000000000000000000000000001206 170.0
YYD1_k127_488408_2 serine threonine protein kinase - - - 0.00000000000001215 76.0
YYD1_k127_4891930_0 Stage II sporulation protein K06381 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002779 267.0
YYD1_k127_4891930_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000738 240.0
YYD1_k127_4891930_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000002067 193.0
YYD1_k127_4891930_3 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000001488 192.0
YYD1_k127_4891930_4 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.000000000000000000000008089 104.0
YYD1_k127_4891930_5 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000000767 101.0
YYD1_k127_489980_0 Carboxypeptidase regulatory-like domain - - - 3.211e-196 644.0
YYD1_k127_489980_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000008915 94.0
YYD1_k127_4928144_0 Copper binding periplasmic protein CusF K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001077 276.0
YYD1_k127_4928144_1 Soluble lytic murein K08309 - - 0.00000000000000000000000002081 127.0
YYD1_k127_4928144_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000004918 65.0
YYD1_k127_4928144_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000001454 62.0
YYD1_k127_4930731_0 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000002755 216.0
YYD1_k127_4930731_1 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000000139 194.0
YYD1_k127_4942971_0 TonB dependent receptor - - - 0.000000000000000000000000000000003815 149.0
YYD1_k127_4942971_1 PD-(D/E)XK nuclease superfamily - - - 0.000000000000001567 79.0
YYD1_k127_4949375_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 497.0
YYD1_k127_4949375_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000001898 167.0
YYD1_k127_4949375_2 2 iron, 2 sulfur cluster binding K00334,K00335 - 1.6.5.3 0.000000000000000000000001354 108.0
YYD1_k127_4949375_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000007735 104.0
YYD1_k127_4961922_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 526.0
YYD1_k127_4961922_1 peptidase M20 K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 390.0
YYD1_k127_4961922_2 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000001662 162.0
YYD1_k127_4961922_3 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000005351 138.0
YYD1_k127_4961922_4 DnaJ (Hsp40) homolog, subfamily C , member 25 K19371 - - 0.00002505 57.0
YYD1_k127_4985834_0 MacB-like periplasmic core domain - - - 1.264e-205 662.0
YYD1_k127_4990092_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 5.369e-225 710.0
YYD1_k127_4990092_1 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000007581 236.0
YYD1_k127_4990092_2 PFAM cobalamin B12-binding domain protein K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000009498 197.0
YYD1_k127_4990092_3 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000191 151.0
YYD1_k127_4992394_0 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000003215 218.0
YYD1_k127_4992394_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000000000000000000004004 104.0
YYD1_k127_4992394_2 Methyltransferase domain - - - 0.00000000006195 72.0
YYD1_k127_4996137_0 ligase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 409.0
YYD1_k127_4996137_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 338.0
YYD1_k127_4996137_2 conserved protein (COG2071) K09166 - - 0.00000000000000000000000000000000000000000000000000000000000003103 223.0
YYD1_k127_5001604_0 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003664 291.0
YYD1_k127_5001604_1 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000001278 173.0
YYD1_k127_5010267_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 GO:0000166,GO:0000287,GO:0000820,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006541,GO:0006542,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008882,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0010565,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019222,GO:0019752,GO:0030554,GO:0031323,GO:0032553,GO:0032555,GO:0032559,GO:0033238,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009621 337.0
YYD1_k127_5016803_0 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000001582 211.0
YYD1_k127_5016803_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000002367 113.0
YYD1_k127_5016803_2 DUF167 K09131 - - 0.00000000000000006976 83.0
YYD1_k127_5016803_3 PFAM YGGT family K02221 - - 0.00000000002681 72.0
YYD1_k127_5016803_4 Tricorn protease C1 domain K03797 - 3.4.21.102 0.0001757 52.0
YYD1_k127_5016838_0 Dienelactone hydrolase family - - - 1.823e-196 627.0
YYD1_k127_5016838_1 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 370.0
YYD1_k127_5016838_2 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 320.0
YYD1_k127_5016838_3 Bacteriocin-protection protein - - - 0.00000000000000000000000000000000000000000000000000000000000007702 218.0
YYD1_k127_5016838_4 -acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000008774 198.0
YYD1_k127_5036650_0 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 319.0
YYD1_k127_5036650_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000005178 228.0
YYD1_k127_5036650_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000005336 100.0
YYD1_k127_5036650_3 Protein of unknown function (DUF2892) - - - 0.000000000002084 67.0
YYD1_k127_5056950_0 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008066 372.0
YYD1_k127_5056950_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 321.0
YYD1_k127_508836_0 Belongs to the transketolase family K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 557.0
YYD1_k127_508836_1 Diacylglycerol kinase K07029 - 2.7.1.107 0.0000000000000009905 84.0
YYD1_k127_508836_2 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.000000000009081 72.0
YYD1_k127_508836_3 - - - - 0.000000002054 65.0
YYD1_k127_5113022_0 Fumarase C C-terminus - - - 6.099e-249 776.0
YYD1_k127_5113022_1 Protein of unknown function (DUF2950) - - - 0.00000000000000000000002529 100.0
YYD1_k127_5134794_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 1.175e-227 713.0
YYD1_k127_5134794_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 493.0
YYD1_k127_5134794_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 415.0
YYD1_k127_5168995_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 465.0
YYD1_k127_5168995_1 Outer membrane efflux protein - - - 0.0000000000003038 82.0
YYD1_k127_5184546_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 317.0
YYD1_k127_5184546_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009108 325.0
YYD1_k127_5184546_2 Oxidoreductase, molybdopterin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 288.0
YYD1_k127_5184546_3 DSBA-like thioredoxin domain K21990 - - 0.0000000000000000000000000000000005331 140.0
YYD1_k127_5184546_4 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000004299 104.0
YYD1_k127_5184546_5 TM2 domain - - - 0.00000000000002182 79.0
YYD1_k127_5184546_6 Vitamin k epoxide reductase K00368 - 1.7.2.1 0.00000001049 63.0
YYD1_k127_5189115_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004083 273.0
YYD1_k127_5189115_1 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000002103 199.0
YYD1_k127_5189115_2 PFAM Carbamoyltransferase K00612 - - 0.0000000000000000000000000000000000000000000002726 173.0
YYD1_k127_5189115_3 PFAM Glycosyl transferases group 1 - - - 0.00000000007836 68.0
YYD1_k127_5203064_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 405.0
YYD1_k127_5203064_1 protein homotetramerization - - - 0.000000000000000000000000000000000000002274 157.0
YYD1_k127_5203064_2 Radical SAM domain protein - - - 0.00000000000000000000000000000000000009066 144.0
YYD1_k127_5203064_3 - catabolite gene activator and regulatory subunit of cAMP-dependent protein K10914 - - 0.00000000000000000000001585 109.0
YYD1_k127_5203064_4 cell redox homeostasis K02199 - - 0.00000000000000000009223 96.0
YYD1_k127_5203064_5 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000004003 79.0
YYD1_k127_5203064_6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00002705 47.0
YYD1_k127_5204379_0 Putative carbohydrate binding domain K12373 - 3.2.1.52 9.201e-237 752.0
YYD1_k127_5204379_1 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007497 330.0
YYD1_k127_5204379_2 TIGRFAM VWFA-related Acidobacterial domain - - - 0.0000000000000000000000000000000000000000000002547 190.0
YYD1_k127_5204379_3 Fibronectin type III-like domain K05349 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008422,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0015926,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.21 0.00000000000000000000000001732 111.0
YYD1_k127_5217135_0 Belongs to the binding-protein-dependent transport system permease family K10559,K10561 - - 2.958e-279 874.0
YYD1_k127_5217135_1 Branched-chain amino acid transport system / permease component K10560 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 350.0
YYD1_k127_5217135_2 Involved in the anomeric conversion of L-rhamnose K03534 GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 5.1.3.32 0.000000000000000000000000000000000000002813 150.0
YYD1_k127_5217245_0 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 1.9e-229 720.0
YYD1_k127_5217245_1 - - - - 0.00001705 56.0
YYD1_k127_5246391_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 1.079e-260 816.0
YYD1_k127_5246391_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 486.0
YYD1_k127_5246391_2 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005229 430.0
YYD1_k127_5246391_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000006905 218.0
YYD1_k127_5246391_5 von Willebrand factor type A domain K07114 - - 0.00000003359 62.0
YYD1_k127_5307464_2 lipoprotein localization to outer membrane K02004 - - 0.00000000000000000000000000000000000000000002119 184.0
YYD1_k127_5307464_3 - - - - 0.000000000000002892 79.0
YYD1_k127_5307464_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00003579 57.0
YYD1_k127_5314820_0 5'-nucleotidase, C-terminal domain K01119 - 3.1.3.6,3.1.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000006553 251.0
YYD1_k127_5314820_1 lipoprotein localization to outer membrane K02004,K09808 - - 0.000000000000000000000000000000000000007187 157.0
YYD1_k127_5314820_2 glycosyl transferase family - - - 0.0001245 55.0
YYD1_k127_5324075_0 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000463 437.0
YYD1_k127_5324075_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 334.0
YYD1_k127_5324075_2 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 308.0
YYD1_k127_5324075_3 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 302.0
YYD1_k127_5324075_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002133 269.0
YYD1_k127_5330121_0 ATPase activity K13527 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007139 342.0
YYD1_k127_5330121_1 DNA mediated transformation - - - 0.00000000000000000000000000000000000000001669 169.0
YYD1_k127_5330121_2 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000007629 127.0
YYD1_k127_5330121_3 DNA mediated transformation K04096 - - 0.0000000000000000000000000005564 120.0
YYD1_k127_5330121_4 PFAM PspC domain K03973 - - 0.000006007 51.0
YYD1_k127_5347553_0 Domain of unknown function (DUF1972) K12996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009285 402.0
YYD1_k127_5347553_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003033 278.0
YYD1_k127_5347553_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.00000000000000000000000000000000000000000004092 164.0
YYD1_k127_5347553_3 - - - - 0.000000000000000000000000000000000004588 152.0
YYD1_k127_5347553_4 Gram-negative bacterial TonB protein C-terminal - - - 0.000000001085 70.0
YYD1_k127_5347553_5 domain protein - - - 0.000000002566 68.0
YYD1_k127_5355589_0 transporter K10441 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 531.0
YYD1_k127_5355589_1 TIGRFAM galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 463.0
YYD1_k127_5355589_2 inositol monophosphate 1-phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 408.0
YYD1_k127_5355589_3 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 405.0
YYD1_k127_5362254_0 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 534.0
YYD1_k127_5362254_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008137 427.0
YYD1_k127_5362254_2 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.0000000000000000001372 96.0
YYD1_k127_5365401_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 563.0
YYD1_k127_5365401_1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.00000000000000000000000000000000000000002572 166.0
YYD1_k127_5365401_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000001644 126.0
YYD1_k127_5365401_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000001014 95.0
YYD1_k127_53719_0 Phytanoyl-CoA dioxygenase (PhyH) K00477 - 1.14.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006418 379.0
YYD1_k127_53719_1 Peptidase, M16 - - - 0.000000000449 68.0
YYD1_k127_5391445_0 Catalyzes the synthesis of activated sulfate K00958 - 2.7.7.4 1.217e-221 699.0
YYD1_k127_5391445_1 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007869 593.0
YYD1_k127_5391445_2 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 373.0
YYD1_k127_5391445_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000004515 108.0
YYD1_k127_5391445_4 PD-(D/E)XK nuclease superfamily - - - 0.0000000000002491 70.0
YYD1_k127_5394681_0 PFAM Formiminotransferase domain K00603,K13990 - 2.1.2.5,4.3.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001978 284.0
YYD1_k127_5394681_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000568 253.0
YYD1_k127_5394681_2 Stage II sporulation protein M - - - 0.00000000000000000000000000000000000000000000000000000000000000000001668 245.0
YYD1_k127_5394681_3 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000002283 105.0
YYD1_k127_5404408_0 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 471.0
YYD1_k127_5404408_1 Belongs to the ClpA ClpB family K03696 - - 0.000000000000000000000000000000000000000000000008329 176.0
YYD1_k127_5417349_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 4.108e-302 943.0
YYD1_k127_5443321_0 Pkd domain containing protein K07407 - 3.2.1.22 2.87e-225 713.0
YYD1_k127_5443321_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01707 - 4.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 301.0
YYD1_k127_5443321_2 Alpha-L-fucosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004028 258.0
YYD1_k127_5443321_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000003867 203.0
YYD1_k127_5471563_0 Belongs to the HpcH HpaI aldolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 569.0
YYD1_k127_5471563_1 Peptidase family M49 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001664 261.0
YYD1_k127_5471563_2 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000165 160.0
YYD1_k127_5472434_0 PFAM PrkA AAA domain K07180 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 401.0
YYD1_k127_5472434_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000009972 226.0
YYD1_k127_5472434_2 Modulates RecA activity K03565,K19002 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019899,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496 2.4.1.337 0.0000000000001148 78.0
YYD1_k127_5475629_0 PFAM sigma-54 factor interaction domain-containing protein K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005756 448.0
YYD1_k127_5486458_0 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 381.0
YYD1_k127_5486458_1 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003188 324.0
YYD1_k127_5486458_2 Yqey-like protein K09117 - - 0.00000000000000000000000000000000005784 139.0
YYD1_k127_5486458_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000001045 133.0
YYD1_k127_5486458_4 Two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.00005834 50.0
YYD1_k127_549258_0 Common central domain of tyrosinase K00505 - 1.14.18.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009446 484.0
YYD1_k127_549258_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000004501 239.0
YYD1_k127_549258_2 signal sequence binding - - - 0.0000000000000000000000000000000007615 134.0
YYD1_k127_549258_3 von Willebrand factor (vWF) type A domain K07114 - - 0.00009894 49.0
YYD1_k127_5499466_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1112.0
YYD1_k127_5499466_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 2.745e-221 698.0
YYD1_k127_5499466_2 Natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007516 451.0
YYD1_k127_5499466_3 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000001373 222.0
YYD1_k127_5499466_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000003486 157.0
YYD1_k127_5499466_5 Hsp20/alpha crystallin family K13993 - - 0.00000000000000000000006992 103.0
YYD1_k127_5499466_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.00000000000000000038 96.0
YYD1_k127_552778_0 ATP dependent DNA ligase C terminal region K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 565.0
YYD1_k127_552778_1 Peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 474.0
YYD1_k127_552778_2 Peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 355.0
YYD1_k127_552778_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0043953,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000000000000001486 160.0
YYD1_k127_552778_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 - - 0.000000001185 64.0
YYD1_k127_5537689_0 WD40 repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004614 299.0
YYD1_k127_5537689_1 oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001491 280.0
YYD1_k127_5537689_2 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188,K09874 - - 0.00002083 47.0
YYD1_k127_5555537_0 Enoyl-CoA hydratase/isomerase K15513 - 4.1.2.44 8.177e-209 662.0
YYD1_k127_5555537_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 3.325e-205 647.0
YYD1_k127_5555537_2 Bacterial regulatory proteins, tetR family - - - 0.00000001112 60.0
YYD1_k127_5581237_0 protocatechuate 3,4-dioxygenase activity K00449 - 1.13.11.3 0.0000000000000000000000000000000001053 143.0
YYD1_k127_5581237_1 Haem-binding domain - - - 0.0000000000000000000000000000000009745 137.0
YYD1_k127_5581237_2 DNA-templated transcription, initiation - - - 0.00000000563 60.0
YYD1_k127_5595216_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000004152 244.0
YYD1_k127_5595216_1 phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.0000000000000000000000000000000000000000000000000008128 191.0
YYD1_k127_5638415_0 MacB-like periplasmic core domain - - - 1.271e-217 703.0
YYD1_k127_5638415_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000003655 197.0
YYD1_k127_5638415_2 MacB-like periplasmic core domain - - - 0.000000001279 62.0
YYD1_k127_5651053_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.145e-282 906.0
YYD1_k127_5651053_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005082 420.0
YYD1_k127_5651053_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000001049 171.0
YYD1_k127_5686337_0 PhoQ Sensor K07640 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000854 359.0
YYD1_k127_5686337_1 Transcriptional regulatory protein, C terminal K07662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 306.0
YYD1_k127_5686337_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001441 268.0
YYD1_k127_5728449_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000005046 210.0
YYD1_k127_5728449_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000007498 180.0
YYD1_k127_5728449_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000001071 184.0
YYD1_k127_5728449_3 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000000000000000000000001095 132.0
YYD1_k127_574221_0 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000000000002183 199.0
YYD1_k127_574221_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000004143 189.0
YYD1_k127_574221_2 Cation transport regulator - - - 0.0000000000000000000000000000000000000000000004224 173.0
YYD1_k127_574221_3 PFAM von Willebrand factor type A - - - 0.00000000000000000000000000000000000000000001661 176.0
YYD1_k127_574221_4 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000006397 93.0
YYD1_k127_574221_5 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000001327 89.0
YYD1_k127_574221_6 CsbD-like - - - 0.0000000118 59.0
YYD1_k127_574221_7 PFAM response regulator receiver - - - 0.00002208 49.0
YYD1_k127_5746089_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 557.0
YYD1_k127_5746089_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 482.0
YYD1_k127_5746089_2 - K00262 - 1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 451.0
YYD1_k127_5746089_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000007588 239.0
YYD1_k127_5752165_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 396.0
YYD1_k127_5752165_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 312.0
YYD1_k127_5752165_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000004864 232.0
YYD1_k127_5752165_3 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.000000000000000000000000000000000000000000000000000000000005205 215.0
YYD1_k127_5752165_4 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000336 136.0
YYD1_k127_5752165_5 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000004387 104.0
YYD1_k127_5752165_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000001134 111.0
YYD1_k127_5752165_7 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000006243 95.0
YYD1_k127_5752165_8 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00002367 46.0
YYD1_k127_5766210_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 492.0
YYD1_k127_5766210_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009079 279.0
YYD1_k127_5766210_2 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000001169 201.0
YYD1_k127_5768420_0 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004406 411.0
YYD1_k127_5768420_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000815 361.0
YYD1_k127_5769568_0 Aconitase family (aconitate hydratase) K01681 - 4.2.1.3 0.0 1210.0
YYD1_k127_5770436_0 Amino acid permease K03294 - - 5.916e-213 672.0
YYD1_k127_5770436_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009058 520.0
YYD1_k127_5770436_2 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 450.0
YYD1_k127_5770436_3 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007353 316.0
YYD1_k127_5784234_0 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000003979 257.0
YYD1_k127_5784234_1 - - - - 0.000000000000000000000000007647 115.0
YYD1_k127_5784234_2 Thiol disulfide interchange protein - - - 0.00000000000000000000001529 114.0
YYD1_k127_5786665_0 TonB-dependent Receptor Plug Domain K02014,K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 397.0
YYD1_k127_5786665_1 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000001075 178.0
YYD1_k127_5786665_2 Domain of unknown function (DUF4383) - - - 0.0005305 48.0
YYD1_k127_5803036_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 374.0
YYD1_k127_5803036_1 cheY-homologous receiver domain - - - 0.000000000000000000000000001262 116.0
YYD1_k127_5803036_3 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.00000375 57.0
YYD1_k127_5808128_0 ATPases associated with a variety of cellular activities K10823,K10824 - 3.6.3.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 444.0
YYD1_k127_5808128_1 Belongs to the ABC transporter superfamily K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 419.0
YYD1_k127_5808128_2 'ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 350.0
YYD1_k127_5808128_3 transporter, permease K02033,K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008109 310.0
YYD1_k127_5808128_4 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000677 196.0
YYD1_k127_5808792_0 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000003559 218.0
YYD1_k127_5819210_0 B12 binding domain - - - 4.264e-196 618.0
YYD1_k127_5819210_1 PFAM magnesium chelatase K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004477 549.0
YYD1_k127_5819210_2 PFAM Peptidase M1 membrane alanine aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 421.0
YYD1_k127_5824565_0 RNA 2'-O ribose methyltransferase substrate binding K03218 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000006545 243.0
YYD1_k127_5824565_1 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000233 215.0
YYD1_k127_5824565_2 Uncharacterized conserved protein (DUF2203) - - - 0.000000000000000000003164 98.0
YYD1_k127_5824565_3 RDD family - - - 0.0000003385 62.0
YYD1_k127_5893032_0 Tetratricopeptide repeat K02200 - - 0.00000000000000000000000000000000000000000000000000003586 198.0
YYD1_k127_5893032_1 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000001495 152.0
YYD1_k127_5893032_2 PFAM pentapeptide repeat protein - - - 0.0000000000000000004792 99.0
YYD1_k127_5893032_3 Protein of unknown function (DUF1059) - - - 0.00000000000000002917 83.0
YYD1_k127_5893032_4 domain, Protein K03112 - - 0.0000001878 61.0
YYD1_k127_5893032_5 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000003104 60.0
YYD1_k127_5893032_6 Tetratricopeptide repeat - - - 0.00004623 53.0
YYD1_k127_5893032_7 Polymer-forming cytoskeletal - - - 0.0003596 49.0
YYD1_k127_5897840_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 6.589e-224 702.0
YYD1_k127_5897840_1 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000002071 81.0
YYD1_k127_5897840_2 glycogen (starch) synthase activity K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.000000000002093 68.0
YYD1_k127_59190_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 307.0
YYD1_k127_59190_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 302.0
YYD1_k127_59190_2 Glycosyltransferase like family 2 - - - 0.0000004718 61.0
YYD1_k127_5920078_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004505 440.0
YYD1_k127_5920078_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 286.0
YYD1_k127_5920078_2 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001559 279.0
YYD1_k127_5920078_3 Fibronectin type 3 domain - - - 0.0000000000000000006428 99.0
YYD1_k127_5928013_0 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008744 451.0
YYD1_k127_5928013_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000658 263.0
YYD1_k127_5928013_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000002154 238.0
YYD1_k127_5928013_4 ABC-2 family transporter protein - - - 0.00000144 57.0
YYD1_k127_5935417_0 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 311.0
YYD1_k127_5935417_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000003883 226.0
YYD1_k127_5935417_2 Belongs to the DNA photolyase family K01669 GO:0000003,GO:0000166,GO:0000719,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006325,GO:0006338,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009605,GO:0009606,GO:0009607,GO:0009615,GO:0009628,GO:0009637,GO:0009638,GO:0009642,GO:0009645,GO:0009646,GO:0009648,GO:0009719,GO:0009725,GO:0009785,GO:0009791,GO:0009881,GO:0009882,GO:0009888,GO:0009893,GO:0009909,GO:0009911,GO:0009987,GO:0010033,GO:0010035,GO:0010073,GO:0010075,GO:0010118,GO:0010228,GO:0010244,GO:0010617,GO:0014070,GO:0016043,GO:0016604,GO:0016829,GO:0016830,GO:0017076,GO:0019222,GO:0019637,GO:0019725,GO:0022414,GO:0022603,GO:0023052,GO:0030003,GO:0030522,GO:0030554,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0033993,GO:0034641,GO:0035639,GO:0036094,GO:0038023,GO:0040008,GO:0042221,GO:0042592,GO:0042726,GO:0042752,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048037,GO:0048507,GO:0048509,GO:0048511,GO:0048518,GO:0048522,GO:0048571,GO:0048573,GO:0048574,GO:0048580,GO:0048582,GO:0048583,GO:0048608,GO:0048638,GO:0048731,GO:0048831,GO:0048856,GO:0048878,GO:0050660,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051276,GO:0051480,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055086,GO:0060089,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071949,GO:0072387,GO:0072503,GO:0072507,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098771,GO:0104004,GO:0140097,GO:1900618,GO:1901265,GO:1901360,GO:1901363,GO:1901371,GO:1901564,GO:1901700,GO:1902347,GO:1905421,GO:2000024,GO:2000026,GO:2000028,GO:2000241,GO:2000243,GO:2000377,GO:2000379 4.1.99.3 0.000000000000000000000000000000000000000000000000001086 184.0
YYD1_k127_593792_0 SPTR Tetratricopeptide repeat domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 397.0
YYD1_k127_5937927_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 1.752e-263 835.0
YYD1_k127_5952655_0 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 348.0
YYD1_k127_5952655_1 PFAM phospholipase Carboxylesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001597 253.0
YYD1_k127_5952655_2 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001097 258.0
YYD1_k127_5952655_3 - - - - 0.00000004642 60.0
YYD1_k127_5972496_0 enzyme involved in inositol metabolism K03337 - 5.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 357.0
YYD1_k127_5972496_1 Cupin 2, conserved barrel domain protein - - - 0.0000000000000007782 83.0
YYD1_k127_5972496_2 TIGRFAM SUF system FeS assembly protein, NifU family K04488 - - 0.0000007245 51.0
YYD1_k127_5984357_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 357.0
YYD1_k127_5984357_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0000287,GO:0003674,GO:0003824,GO:0004799,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046385,GO:0046483,GO:0046872,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 347.0
YYD1_k127_5984357_2 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287,K18590 GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016646,GO:0019842,GO:0031406,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050896,GO:0051870,GO:0051871,GO:0055114,GO:0070401,GO:0070402,GO:0072341,GO:0097159,GO:1901265,GO:1901363 1.5.1.3 0.0000000000000000000000000001475 121.0
YYD1_k127_5984357_3 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000007742 54.0
YYD1_k127_5998441_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 464.0
YYD1_k127_5998441_1 Protein of unknown function (DUF1385) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000027 258.0
YYD1_k127_5998441_2 Binds the 23S rRNA K02909 - - 0.00000000000000000000000000001822 118.0
YYD1_k127_6013378_0 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 363.0
YYD1_k127_6013378_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001357 270.0
YYD1_k127_6013378_2 PFAM short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007622 251.0
YYD1_k127_6013378_3 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000003013 220.0
YYD1_k127_6013378_4 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000005217 196.0
YYD1_k127_6013378_5 Bacterial regulatory proteins, tetR family K09017 - - 0.0000000000000000000000000000000000006445 148.0
YYD1_k127_6013378_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000008506 77.0
YYD1_k127_6013378_7 Belongs to the UPF0232 family - - - 0.0000009965 56.0
YYD1_k127_601394_0 peptidase M15B and M15C DD-carboxypeptidase VanY - - - 0.00000000000004068 83.0
YYD1_k127_601394_1 Domain present in PSD-95, Dlg, and ZO-1/2. K08372 - - 0.000000005381 67.0
YYD1_k127_601394_2 serine-type endopeptidase activity K04771 - 3.4.21.107 0.00000003014 65.0
YYD1_k127_6020144_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 475.0
YYD1_k127_6020144_1 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000175 138.0
YYD1_k127_6029338_0 Peptidase family M1 domain - - - 0.0000000000000000000000000000000001539 151.0
YYD1_k127_6029338_1 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000000001091 121.0
YYD1_k127_6029338_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.000000000000000000000000006991 111.0
YYD1_k127_6029338_3 Thioredoxin-like - - - 0.000000000000000000001914 96.0
YYD1_k127_6034161_0 PFAM Organic solvent tolerance protein K04744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006828 299.0
YYD1_k127_6060504_0 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005756 483.0
YYD1_k127_6060504_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000002968 175.0
YYD1_k127_6060504_2 type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000005132 65.0
YYD1_k127_6064611_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1052.0
YYD1_k127_6064611_1 GAF domain K08968 - 1.8.4.14 0.0000000000000000000000000000000000000001353 154.0
YYD1_k127_6064611_2 Peptidase M14, carboxypeptidase A - - - 0.00000000000000000000004719 101.0
YYD1_k127_6066977_0 transmembrane transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 334.0
YYD1_k127_6066977_1 - - - - 0.00000000000000000000000000000000376 137.0
YYD1_k127_6120850_0 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008311 354.0
YYD1_k127_6120850_1 glucosamine-6-phosphate deaminase activity K01057,K02564 - 3.1.1.31,3.5.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 351.0
YYD1_k127_6120850_2 PFAM Major Facilitator Superfamily K08191 - - 0.00000000000000000000008889 100.0
YYD1_k127_6120850_3 SAF K01685 - 4.2.1.7 0.00000000567 62.0
YYD1_k127_6127151_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006667 525.0
YYD1_k127_6127151_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 385.0
YYD1_k127_6127151_2 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000001325 213.0
YYD1_k127_6127151_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000191 121.0
YYD1_k127_6127151_4 CoA-transferase family III - - - 0.000000000000001569 78.0
YYD1_k127_6127151_5 Cell division protein FtsQ K03589 - - 0.000000000001145 79.0
YYD1_k127_6149291_0 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 367.0
YYD1_k127_6149291_1 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 316.0
YYD1_k127_6149291_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000001479 160.0
YYD1_k127_6149291_3 outer membrane autotransporter barrel domain protein - - - 0.0000000000000000000000000006545 122.0
YYD1_k127_6149291_4 - - - - 0.000000001549 64.0
YYD1_k127_6161903_0 Domain of unknown function (DUF4070) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008347 498.0
YYD1_k127_6161903_1 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000344 186.0
YYD1_k127_6161903_2 phosphorelay signal transduction system - - - 0.0000000000000000001814 92.0
YYD1_k127_6189904_0 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004691 321.0
YYD1_k127_6189904_1 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000004551 175.0
YYD1_k127_6196051_0 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000003808 248.0
YYD1_k127_6196051_1 Belongs to the MlaE permease family K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000373 239.0
YYD1_k127_6196051_2 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000000000004228 207.0
YYD1_k127_6196051_3 Helix-turn-helix domain K03088 - - 0.00000000000000000002017 96.0
YYD1_k127_6199057_0 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000002372 125.0
YYD1_k127_6199057_1 Belongs to the peptidase M10A family K07999 - - 0.0000001229 64.0
YYD1_k127_6205764_0 PFAM NHL repeat - - - 1.376e-203 654.0
YYD1_k127_6205764_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000001728 147.0
YYD1_k127_6205982_0 Sialate O-acetylesterase K05970 - 3.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 500.0
YYD1_k127_6205982_1 endo-1,4-beta-xylanase activity K21606 - 3.2.1.202 0.00000000000000000000000000000000000000000000000000000000000000000000000000002202 262.0
YYD1_k127_6206410_0 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006308 302.0
YYD1_k127_6206410_1 Protein of unknown function (DUF1572) - - - 0.0000000000000000000000000000000000000000000000000000000000003184 215.0
YYD1_k127_6212479_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007989 571.0
YYD1_k127_6212479_1 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 306.0
YYD1_k127_6212479_2 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005223 280.0
YYD1_k127_6212479_3 metalloendopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000002569 218.0
YYD1_k127_6212479_4 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000000003104 116.0
YYD1_k127_6212479_5 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000006187 103.0
YYD1_k127_6217249_0 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000001403 179.0
YYD1_k127_6217249_1 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000000000000414 144.0
YYD1_k127_6217249_2 adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.000001082 61.0
YYD1_k127_6230267_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 327.0
YYD1_k127_6230267_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000005242 120.0
YYD1_k127_6270878_0 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 331.0
YYD1_k127_6273813_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 334.0
YYD1_k127_6273813_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000005557 211.0
YYD1_k127_6278143_0 Peptidase M14, carboxypeptidase A - - - 6.131e-239 754.0
YYD1_k127_6278143_1 RNA polymerase, sigma subunit, ECF family K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 545.0
YYD1_k127_6278143_2 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000003117 186.0
YYD1_k127_6278143_3 DoxX-like family - - - 0.0000000000000000000000000000000000000000001329 162.0
YYD1_k127_6278143_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000005369 131.0
YYD1_k127_6278143_5 copper resistance - - - 0.000002353 55.0
YYD1_k127_6310075_0 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 514.0
YYD1_k127_6310075_1 Ion transport 2 domain protein K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000442 261.0
YYD1_k127_6332968_0 Glutamine cyclotransferase K00683 - 2.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000001226 266.0
YYD1_k127_6332968_1 Domain of unknown function (DUF3488) - - - 0.000000000000000000000000000000000000000000000000000000000000000008557 245.0
YYD1_k127_6389531_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 429.0
YYD1_k127_6389531_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528,K16203 GO:0000270,GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0019134,GO:0022610,GO:0030203,GO:0030260,GO:0033692,GO:0034637,GO:0034645,GO:0035635,GO:0040007,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044650,GO:0046872,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 426.0
YYD1_k127_6389531_2 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 314.0
YYD1_k127_6389531_3 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007903 295.0
YYD1_k127_6389531_4 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005493 267.0
YYD1_k127_6389531_5 PFAM Roadblock LC7 family protein - - - 0.00000000000000000000000000000000000000000008571 164.0
YYD1_k127_6389531_6 Tetratricopeptide repeat - - - 0.000005176 57.0
YYD1_k127_6414390_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000001397 257.0
YYD1_k127_6414390_1 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005655 250.0
YYD1_k127_6414390_2 D,d-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000006676 222.0
YYD1_k127_6414390_3 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000000001883 195.0
YYD1_k127_6414390_4 lipopolysaccharide heptosyltransferase K02841,K02843 - - 0.000000000000000000000000000000000000000000000000000004887 203.0
YYD1_k127_6414390_5 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000001354 156.0
YYD1_k127_6414390_6 Polysaccharide biosynthesis protein K12454 - 5.1.3.10 0.0000000000000000000000006751 114.0
YYD1_k127_6422122_0 COG1078 HD superfamily phosphohydrolases K06885 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 308.0
YYD1_k127_6422122_1 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000069 224.0
YYD1_k127_6422122_2 Tricorn protease C1 domain K03797 - 3.4.21.102 0.0000000000000000000000000000000008445 146.0
YYD1_k127_6422122_3 Periplasmic protein TonB links inner and outer membranes - - - 0.000000008897 66.0
YYD1_k127_6426831_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 1.819e-276 872.0
YYD1_k127_6426831_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009153 366.0
YYD1_k127_6426831_2 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K22024 - 1.1.1.408,1.1.1.409 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 295.0
YYD1_k127_6426831_3 response regulator - - - 0.000000000000000000000000000000002307 144.0
YYD1_k127_6426831_4 Hfq protein - - - 0.0000000000000000000000006636 108.0
YYD1_k127_6426831_5 7TM diverse intracellular signalling - - - 0.0000000000000001879 85.0
YYD1_k127_6451667_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 2.188e-265 837.0
YYD1_k127_6451667_1 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000003909 172.0
YYD1_k127_6451667_2 Redoxin - - - 0.00000000000000000000000008203 115.0
YYD1_k127_6451667_3 Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in the first half-reaction K00824 - 2.6.1.21 0.000838 46.0
YYD1_k127_6457084_0 Glycosyl hydrolase family 47 K01230 - 3.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003181 565.0
YYD1_k127_6457084_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 434.0
YYD1_k127_6457084_2 peptidoglycan biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000183 243.0
YYD1_k127_6457084_3 PFAM Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000002059 224.0
YYD1_k127_6482659_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 1.363e-260 816.0
YYD1_k127_6482659_1 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008951 285.0
YYD1_k127_6482659_2 selenocysteine lyase - - - 0.00000000000000000000000000000000000000000000000007537 192.0
YYD1_k127_6482659_3 LysR substrate binding domain K21703,K21711 - - 0.0000000000000000000000000000000000000000001547 171.0
YYD1_k127_6482659_4 BadF BadG BcrA BcrD - GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006040,GO:0006044,GO:0006082,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0045127,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901071,GO:1901135,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000004133 161.0
YYD1_k127_6482659_5 Sodium:solute symporter family - - - 0.00000000001937 64.0
YYD1_k127_6499218_0 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.000000000000000000000000000000000000000000000000000000000000000000000003182 259.0
YYD1_k127_6499218_1 Cytochrome C biogenesis protein K06196,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000006995 205.0
YYD1_k127_6499218_2 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000005011 94.0
YYD1_k127_6501836_0 Amidohydrolase family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000005904 163.0
YYD1_k127_6501836_1 protein conserved in bacteria K09974 - - 0.00000000000000000000000000000000000003752 144.0
YYD1_k127_6501836_2 SnoaL-like domain - - - 0.000000000000000000000000000000000002812 143.0
YYD1_k127_6501836_3 Domain of unknown function (DUF1287) K09974 - - 0.000000000005566 67.0
YYD1_k127_6503307_0 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001694 240.0
YYD1_k127_6503307_1 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000001509 229.0
YYD1_k127_6506670_0 Sulfate ABC transporter substrate-binding protein K02048 - - 0.00000000000000000000000000000000000000000000000000000000000000000005733 243.0
YYD1_k127_6506670_1 TIGRFAM sulfate ABC transporter, inner membrane subunit CysT K02046 - - 0.000000000000000000000000000000000000000000000000000215 196.0
YYD1_k127_6507012_0 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 372.0
YYD1_k127_6507012_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000227 278.0
YYD1_k127_6519342_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008653 580.0
YYD1_k127_6519342_1 Ribosomal protein S1 K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 340.0
YYD1_k127_6519342_2 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007111 346.0
YYD1_k127_6519342_3 tRNA processing K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 308.0
YYD1_k127_6519342_4 Peptidase M28 - - - 0.00000000001198 65.0
YYD1_k127_6519342_5 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000128 55.0
YYD1_k127_6521052_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 353.0
YYD1_k127_6521052_1 - - - - 0.00007605 53.0
YYD1_k127_6527248_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 464.0
YYD1_k127_6527248_1 domain, Protein - - - 0.000003882 58.0
YYD1_k127_6550970_0 Protein of unknown function (DUF763) K09003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 593.0
YYD1_k127_6550970_1 cell shape determining protein MreB K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 549.0
YYD1_k127_6550970_10 shape-determining protein MreD K03571 - - 0.0001691 51.0
YYD1_k127_6550970_2 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 523.0
YYD1_k127_6550970_3 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000832 404.0
YYD1_k127_6550970_4 Aminotransferase class I and II K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000177 292.0
YYD1_k127_6550970_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000004489 235.0
YYD1_k127_6550970_6 chlorophyll binding - - - 0.000000000000000000000000000000000000000000000000000001715 203.0
YYD1_k127_6550970_7 GAF domain - - - 0.00000000000000000000000000000000000000001142 173.0
YYD1_k127_6550970_8 2OG-Fe(II) oxygenase superfamily K07336,K07394 - - 0.00000000000000000000000000000000008922 142.0
YYD1_k127_6550970_9 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000008008 136.0
YYD1_k127_6554029_0 40-residue YVTN family beta-propeller repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006444 475.0
YYD1_k127_6554029_1 Putative glutamine amidotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000967 440.0
YYD1_k127_6554029_2 Peptidase C14 caspase catalytic subunit p20 - - - 0.0000000000000000000000000000000000000000000000005995 188.0
YYD1_k127_6554029_3 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000002632 161.0
YYD1_k127_6554029_4 Tetratricopeptide TPR_2 repeat protein - - - 0.000000003079 69.0
YYD1_k127_6554033_0 cAMP biosynthetic process K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001741 273.0
YYD1_k127_6554033_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000007411 66.0
YYD1_k127_656137_0 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005302 297.0
YYD1_k127_6575674_0 Oxidoreductase family, C-terminal alpha beta domain K16043 - 1.1.1.370 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 314.0
YYD1_k127_6575674_1 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000001275 201.0
YYD1_k127_6619084_0 Phosphoenolpyruvate phosphomutase K03417 - 4.1.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000002638 259.0
YYD1_k127_6619084_1 PFAM beta-lactamase K17836 - 3.5.2.6 0.0000000000000000000000000000000000000000000000003877 188.0
YYD1_k127_6619084_2 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000005179 169.0
YYD1_k127_6633473_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 529.0
YYD1_k127_6633473_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007727 292.0
YYD1_k127_6633473_2 CorA-like Mg2+ transporter protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008661 294.0
YYD1_k127_6633473_3 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.000000000000000000000000009422 118.0
YYD1_k127_6639108_0 TonB dependent receptor K16090 - - 1.362e-217 700.0
YYD1_k127_665086_0 Electron transfer flavoprotein FAD-binding domain K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 358.0
YYD1_k127_665086_1 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001704 273.0
YYD1_k127_665086_2 Copper binding periplasmic protein CusF K07152 - - 0.00000000241 59.0
YYD1_k127_6656478_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 387.0
YYD1_k127_6656478_1 Putative peptidoglycan binding domain - - - 0.0002033 49.0
YYD1_k127_6657498_0 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 374.0
YYD1_k127_6657498_1 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 298.0
YYD1_k127_6661635_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007208 424.0
YYD1_k127_6672884_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 559.0
YYD1_k127_6672884_1 Type II secretion system (T2SS), protein F K02455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 416.0
YYD1_k127_6672884_2 sigma-54 factor interaction domain-containing protein K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 358.0
YYD1_k127_6672884_3 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006193 306.0
YYD1_k127_6679744_0 Putative serine dehydratase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 380.0
YYD1_k127_6679744_1 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 324.0
YYD1_k127_6691061_0 Elongator protein 3, MiaB family, Radical SAM K06937 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 355.0
YYD1_k127_6691061_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 310.0
YYD1_k127_6691061_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000004181 267.0
YYD1_k127_6691061_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000002815 170.0
YYD1_k127_6691061_4 dehydratase K02372 - 4.2.1.59 0.00000000171 64.0
YYD1_k127_6691061_5 Phosphopantetheine attachment site - - - 0.0000001642 59.0
YYD1_k127_6706563_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006958 467.0
YYD1_k127_6706563_1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 412.0
YYD1_k127_6706563_2 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 331.0
YYD1_k127_6706563_3 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000001621 226.0
YYD1_k127_6706563_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000001582 223.0
YYD1_k127_6706563_5 Protein of unknown function (DUF3108) - - - 0.00000000009138 74.0
YYD1_k127_6706563_6 - - - - 0.0000000008333 64.0
YYD1_k127_6706563_7 Protein of unknown function (DUF3108) - - - 0.000000001984 70.0
YYD1_k127_6708111_0 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006509 487.0
YYD1_k127_6708111_1 Sortilin, neurotensin receptor 3, - - - 0.000000000000000000305 89.0
YYD1_k127_6718517_0 beta-lactamase - - - 4.299e-243 771.0
YYD1_k127_6718517_1 chorismate binding enzyme K01665,K03342,K13950 - 2.6.1.85,4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 499.0
YYD1_k127_6718517_2 transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 487.0
YYD1_k127_6759576_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001245 283.0
YYD1_k127_6770637_0 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000995 353.0
YYD1_k127_6770637_1 amino acid activation for nonribosomal peptide biosynthetic process K17713 - - 0.000000000000000000000000000003011 127.0
YYD1_k127_6776347_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000001486 166.0
YYD1_k127_6776347_1 SurA N-terminal domain K03770 - 5.2.1.8 0.00001786 52.0
YYD1_k127_6781028_0 Dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 402.0
YYD1_k127_6781028_1 Belongs to the CinA family K03742 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 396.0
YYD1_k127_6781028_2 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000001279 190.0
YYD1_k127_6781028_3 Universal stress protein family - - - 0.000000000000000006496 89.0
YYD1_k127_6781028_4 PFAM ferredoxin K08954 - - 0.000007085 55.0
YYD1_k127_679798_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000001995 213.0
YYD1_k127_679798_1 gluconolactonase activity - - - 0.00000000000000001308 85.0
YYD1_k127_6805329_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000002006 180.0
YYD1_k127_6805329_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000003493 138.0
YYD1_k127_6805329_2 Tryptophanyl-tRNA synthetase K01867 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 6.1.1.2 0.0000007365 52.0
YYD1_k127_6818496_0 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000000000000000000000000000000005442 213.0
YYD1_k127_6818496_1 membrane - - - 0.000000000000000000000000026 118.0
YYD1_k127_6836059_0 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000000000000000000000000006484 208.0
YYD1_k127_6836059_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000003008 167.0
YYD1_k127_6836059_2 lactoylglutathione lyase activity K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000003759 164.0
YYD1_k127_6836059_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000003356 120.0
YYD1_k127_6840636_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 566.0
YYD1_k127_6840636_1 Methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000002351 122.0
YYD1_k127_6840636_3 - - - - 0.00008419 48.0
YYD1_k127_6844900_0 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 308.0
YYD1_k127_6844900_1 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000000000000000002538 240.0
YYD1_k127_6844900_2 amine dehydrogenase activity K20276 - - 0.00000000000000000000000002837 126.0
YYD1_k127_6844900_3 Transcriptional regulator, RpiR family - - - 0.0000000000000000000305 102.0
YYD1_k127_6854458_0 Belongs to the PEP-utilizing enzyme family K01006,K01007 - 2.7.9.1,2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006685 602.0
YYD1_k127_6854458_1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 337.0
YYD1_k127_6854458_2 DNA ligase K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 308.0
YYD1_k127_6854458_3 PFAM Pyridoxal-dependent decarboxylase conserved domain K01580,K01593,K13745 - 4.1.1.105,4.1.1.15,4.1.1.28,4.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 315.0
YYD1_k127_6854458_4 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000000000000004159 104.0
YYD1_k127_6855717_0 Ring hydroxylating alpha subunit (catalytic domain) K00479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 453.0
YYD1_k127_6855717_1 amino acid K03294,K20265 - - 0.000000000000000000000000000000000000004269 151.0
YYD1_k127_6860577_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009618 292.0
YYD1_k127_6860577_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000001431 221.0
YYD1_k127_6860577_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000000000000000000000003722 199.0
YYD1_k127_6865763_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01706 - 4.2.1.40 3.678e-224 699.0
YYD1_k127_6865763_1 glucuronate isomerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 460.0
YYD1_k127_6865763_2 Belongs to the glycosyl hydrolase 67 family K01235 - 3.2.1.139 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 388.0
YYD1_k127_6874587_0 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 490.0
YYD1_k127_6874587_1 Glycosyl transferase family 2 - - - 0.00000000000000000005823 98.0
YYD1_k127_6894617_0 Branched-chain amino acid transport system / permease component K10440,K10553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 439.0
YYD1_k127_6894617_1 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000291 265.0
YYD1_k127_6894617_2 Cupin 2, conserved barrel domain protein - - - 0.000000000000008131 87.0
YYD1_k127_6912782_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 610.0
YYD1_k127_6912782_1 protein conserved in cyanobacteria - - - 0.000000000000000000000000000000000000000000000000000000000000003048 220.0
YYD1_k127_6912782_2 Universal stress protein - - - 0.0000000000000001424 91.0
YYD1_k127_6912782_3 PFAM Rhodanese domain protein - - - 0.00000000000006797 76.0
YYD1_k127_707723_0 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 549.0
YYD1_k127_707723_1 homolog of phage Mu protein gp47 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008623 453.0
YYD1_k127_707723_2 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007041 445.0
YYD1_k127_707723_3 homolog of phage Mu protein gp47 - - - 0.000000000000000000002303 96.0
YYD1_k127_722104_0 Radical SAM - - - 1.025e-220 702.0
YYD1_k127_722104_1 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001427 281.0
YYD1_k127_722104_2 Transposase K07491 - - 0.0000000000000000000000000000000000000000000000001408 181.0
YYD1_k127_743650_0 Carboxypeptidase regulatory-like domain - - - 2.205e-305 962.0
YYD1_k127_743650_1 Glycosyl hydrolases family 43 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 492.0
YYD1_k127_743650_2 Putative lumazine-binding - - - 0.000000000000000000000000000000000000007561 146.0
YYD1_k127_749787_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007054 475.0
YYD1_k127_749787_1 - - - - 0.000000000000000000000000005948 123.0
YYD1_k127_749787_2 PFAM von Willebrand factor type A - - - 0.00000000000004418 82.0
YYD1_k127_761386_0 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004871 379.0
YYD1_k127_761386_1 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000001559 109.0
YYD1_k127_761386_2 iron ion homeostasis - - - 0.00000000000000000004189 103.0
YYD1_k127_761386_3 Transcriptional regulator K07979 - - 0.0000000000004545 73.0
YYD1_k127_761386_4 von Willebrand factor type A domain K07114 - - 0.00000008703 65.0
YYD1_k127_807664_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 1.674e-262 838.0
YYD1_k127_809004_0 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 471.0
YYD1_k127_814509_0 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 443.0
YYD1_k127_814509_1 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000000000000000001783 151.0
YYD1_k127_817229_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 535.0
YYD1_k127_817229_1 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.00000000003666 63.0
YYD1_k127_836422_0 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 558.0
YYD1_k127_836422_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003916 278.0
YYD1_k127_85226_0 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 533.0
YYD1_k127_85226_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000001033 178.0
YYD1_k127_853831_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000769 267.0
YYD1_k127_853831_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000586 242.0
YYD1_k127_853831_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000001941 202.0
YYD1_k127_853831_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.0000000000000000000000000000000000000000000000001318 183.0
YYD1_k127_853831_4 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000005631 78.0
YYD1_k127_853831_5 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.0000000001311 66.0
YYD1_k127_868870_0 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005153 276.0
YYD1_k127_868870_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000003599 117.0
YYD1_k127_871748_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 517.0
YYD1_k127_871748_1 CoA binding domain K06929 - - 0.000000000000000000000000000000000000000001268 159.0
YYD1_k127_871748_2 Regulator of ribonuclease activity B - - - 0.000000983 56.0
YYD1_k127_871748_3 Molybdenum cofactor synthesis domain protein - - - 0.0003718 44.0
YYD1_k127_880975_0 helicase activity - - - 0.0 1062.0
YYD1_k127_880975_1 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 7.121e-195 619.0
YYD1_k127_880975_2 DNA polymerase beta thumb K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 354.0
YYD1_k127_880975_3 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006848 281.0
YYD1_k127_880975_4 - - - - 0.000000000003325 68.0
YYD1_k127_894478_0 elongation factor SelB, winged helix K03833 - - 0.00000000000000000000000000000000000000000000000000000000736 213.0
YYD1_k127_894478_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010412,GO:0015923,GO:0016052,GO:0016787,GO:0016798,GO:0016985,GO:0016998,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046355,GO:0071554,GO:0071704,GO:1901575 3.2.1.78 0.0000000000000000000000000000000000000000000000000008624 205.0
YYD1_k127_918072_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 379.0
YYD1_k127_918072_1 Carboxypeptidase regulatory-like domain - - - 0.000003144 59.0
YYD1_k127_918706_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 535.0
YYD1_k127_918706_1 ABC transporter K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 391.0
YYD1_k127_918706_2 YicC domain protein - - - 0.000000000000000000000000000000000000000000000000000000001271 211.0
YYD1_k127_918706_3 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000000005694 200.0
YYD1_k127_918706_4 DNA-directed 5'-3' RNA polymerase activity K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.00004849 48.0
YYD1_k127_927797_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007128 265.0
YYD1_k127_927797_1 - - - - 0.00000000000000000000000000000000000000000000000000000002769 206.0
YYD1_k127_927797_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000001097 153.0
YYD1_k127_927797_3 Psort location CytoplasmicMembrane, score - - - 0.000000001555 66.0
YYD1_k127_93474_0 PFAM Amidohydrolase 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 346.0
YYD1_k127_93474_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 318.0
YYD1_k127_93474_2 Domain of unknown function (DUF305) K08995 - - 0.000000000000000000000000000000001271 137.0
YYD1_k127_935503_0 - - - - 0.0 1040.0
YYD1_k127_941997_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895,K01907 - 6.2.1.1,6.2.1.16 1.301e-290 904.0
YYD1_k127_941997_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005924 464.0
YYD1_k127_941997_2 Taurine dioxygenase K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 327.0
YYD1_k127_945905_0 Right handed beta helix region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 602.0
YYD1_k127_976505_0 Protein of unknown function (DUF2891) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 454.0
YYD1_k127_976505_1 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000006217 267.0
YYD1_k127_976505_2 Belongs to the universal stress protein A family - - - 0.0000000000009013 79.0
YYD1_k127_976505_3 AI-2E family transporter - - - 0.0001032 45.0
YYD1_k127_98551_0 endonuclease exonuclease phosphatase K07004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 484.0
YYD1_k127_98551_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004489 392.0
YYD1_k127_98551_2 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 294.0
YYD1_k127_98551_3 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 296.0
YYD1_k127_98551_4 PFAM Uncharacterised BCR, COG1649 - - - 0.00000000000000000000000000000000000000000000000000000000000000000128 260.0
YYD1_k127_992301_0 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007797 295.0
YYD1_k127_992301_1 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000003935 111.0