logo

Overview

ID MAG04633
Name YYD2_bin.12
Sample SMP0125
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Terriglobia
Order 20CM-2-55-15
Family 20CM-2-55-15
Genus DASTBJ01
Species DASTBJ01 sp035712125
Assembly information
Completeness (%) 72.77
Contamination (%) 2.26
GC content (%) 57.0
N50 (bp) 9,033
Genome size (bp) 3,196,716

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2794

Gene name Description KEGG GOs EC E-value Score Sequence
YYD2_k127_1013111_0 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 554.0
YYD2_k127_1035946_0 Dehydrogenase K00117 - 1.1.5.2 3.306e-195 632.0
YYD2_k127_1035946_1 and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000376 435.0
YYD2_k127_1035946_10 - - - - 0.00000000006319 66.0
YYD2_k127_1035946_11 Prokaryotic Cytochrome C oxidase subunit IV - - - 0.0002876 48.0
YYD2_k127_1035946_2 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001894 258.0
YYD2_k127_1035946_3 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000007227 190.0
YYD2_k127_1035946_4 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000000000000000423 176.0
YYD2_k127_1035946_5 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000006721 151.0
YYD2_k127_1035946_6 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000004378 112.0
YYD2_k127_1035946_7 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000001131 101.0
YYD2_k127_1035946_8 - - - - 0.0000000000006429 78.0
YYD2_k127_1050817_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 555.0
YYD2_k127_1050817_1 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005647 329.0
YYD2_k127_1050817_10 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000005457 127.0
YYD2_k127_1050817_11 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000007948 113.0
YYD2_k127_1050817_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005054 312.0
YYD2_k127_1050817_3 imidazolonepropionase activity - - - 0.00000000000000000000000000000000000000000000000000008554 204.0
YYD2_k127_1050817_4 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000004919 181.0
YYD2_k127_1050817_5 Pyridoxal-dependent decarboxylase conserved domain - - - 0.0000000000000000000000000000000000000000000004138 174.0
YYD2_k127_1050817_6 cellulose binding - - - 0.0000000000000000000000000000000000000000004071 170.0
YYD2_k127_1050817_8 phosphatase activity K07025 - - 0.000000000000000000000000000000000002312 145.0
YYD2_k127_1050817_9 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000003903 139.0
YYD2_k127_1071643_0 DNA topological change - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 476.0
YYD2_k127_1071643_1 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 316.0
YYD2_k127_1071643_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000249 117.0
YYD2_k127_1079237_0 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 587.0
YYD2_k127_1079237_1 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 557.0
YYD2_k127_1079237_2 Aldehyde dehydrogenase family K13922,K18119 - 1.2.1.76,1.2.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 526.0
YYD2_k127_1086232_0 PKD domain containing protein K01337,K20276,K21449 - 3.4.21.50 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 580.0
YYD2_k127_1086232_1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000129 253.0
YYD2_k127_1086232_2 Copper homeostasis K06079 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0010810,GO:0016020,GO:0019867,GO:0030155,GO:0030312,GO:0030313,GO:0031975,GO:0042802,GO:0044462,GO:0044464,GO:0050789,GO:0065007,GO:0071944 - 0.00000000000000000000000000000000000000000000000003691 192.0
YYD2_k127_1086232_4 Large extracellular alpha-helical protein K12548,K13735 - - 0.000003528 56.0
YYD2_k127_1100792_0 TonB-dependent receptor - - - 0.0 1077.0
YYD2_k127_1100792_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 532.0
YYD2_k127_1100792_10 NUDIX domain - - - 0.000000000000000004231 91.0
YYD2_k127_1100792_11 DNA-templated transcription, initiation K03088 - - 0.0000000000002362 78.0
YYD2_k127_1100792_12 - - - - 0.000000000654 62.0
YYD2_k127_1100792_13 Tetratricopeptide repeat - - - 0.00003956 55.0
YYD2_k127_1100792_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001899 400.0
YYD2_k127_1100792_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 314.0
YYD2_k127_1100792_4 COG0492 Thioredoxin reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 317.0
YYD2_k127_1100792_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000002812 229.0
YYD2_k127_1100792_6 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000131 167.0
YYD2_k127_1100792_7 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000002157 138.0
YYD2_k127_1100792_8 CHAT domain - - - 0.0000000000000000000000005007 123.0
YYD2_k127_1100792_9 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000009963 100.0
YYD2_k127_1114477_0 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 610.0
YYD2_k127_1114477_1 Integrase core domain - - - 0.0000000000000000000000000000000000000000000000002746 181.0
YYD2_k127_1114477_2 Domain of unknown function (DUF4143) K07133 - - 0.000000000000000000001489 100.0
YYD2_k127_1124627_0 Pfam Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 582.0
YYD2_k127_1124627_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 554.0
YYD2_k127_1124627_10 PFAM SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000001883 122.0
YYD2_k127_1124627_11 PFAM Colicin V production K03558 - - 0.00000000000000000000003472 105.0
YYD2_k127_1124627_12 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000007693 109.0
YYD2_k127_1124627_13 PFAM Rieske 2Fe-2S domain K03886 - - 0.00000000000000000002159 97.0
YYD2_k127_1124627_14 PFAM Spore coat protein CotH - - - 0.000000000000000000445 100.0
YYD2_k127_1124627_15 PFAM acylphosphatase K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.000000000000001559 80.0
YYD2_k127_1124627_16 PKD domain containing protein K01337,K20276,K21449 - 3.4.21.50 0.000000000000002133 84.0
YYD2_k127_1124627_17 Carboxymuconolactone decarboxylase family - - - 0.0000000006782 65.0
YYD2_k127_1124627_18 PFAM helix-turn-helix, Fis-type - - - 0.000000008711 59.0
YYD2_k127_1124627_19 Short C-terminal domain K08982 - - 0.000000713 53.0
YYD2_k127_1124627_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008172 455.0
YYD2_k127_1124627_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006374 359.0
YYD2_k127_1124627_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 293.0
YYD2_k127_1124627_5 SAICAR synthetase K01923,K13713 - 6.3.2.6,6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003707 274.0
YYD2_k127_1124627_6 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001026 240.0
YYD2_k127_1124627_7 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000006263 227.0
YYD2_k127_1124627_8 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000001173 204.0
YYD2_k127_1124627_9 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000000000000000006515 143.0
YYD2_k127_1135541_0 G8 - - - 1.419e-254 814.0
YYD2_k127_1135541_1 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 582.0
YYD2_k127_1135541_2 ATP ADP translocase K03301 - - 0.0000000000000000000000001423 121.0
YYD2_k127_1135541_3 Involved in the tonB-independent uptake of proteins - - - 0.00000000000504 70.0
YYD2_k127_1136589_0 alginic acid biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008185 379.0
YYD2_k127_1136589_1 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000003683 181.0
YYD2_k127_1136589_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K02003,K09810 - - 0.000000000000000000000000000000000006114 141.0
YYD2_k127_1136589_3 Dehydrogenase - - - 0.0000000000000000004475 94.0
YYD2_k127_1148039_0 PFAM RNA polymerase sigma factor 54, interaction - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008536 313.0
YYD2_k127_1148039_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000004482 168.0
YYD2_k127_1148039_2 Cytochrome C' - - - 0.0000000000000003239 85.0
YYD2_k127_1148039_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K05825 - - 0.000006587 48.0
YYD2_k127_1156472_0 ABC transporter - - - 4.944e-287 888.0
YYD2_k127_1156472_1 Alkylated DNA repair protein K03919 - 1.14.11.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 286.0
YYD2_k127_1156472_2 Hypothetical methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001077 248.0
YYD2_k127_1156472_3 PAS domain - - - 0.000000000000000000000000000000000000000001557 158.0
YYD2_k127_1156472_4 MarR family - - - 0.00000000002801 65.0
YYD2_k127_1159964_0 heat shock protein 70 K04043,K04044 - - 5.905e-212 674.0
YYD2_k127_1159964_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 605.0
YYD2_k127_1159964_10 phosphatase activity K07025 - - 0.00000000000000000000000000000000000000000000003638 177.0
YYD2_k127_1159964_11 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000009041 131.0
YYD2_k127_1159964_12 PFAM heat shock protein DnaJ K04082 - - 0.0000000000000000000000000000005246 128.0
YYD2_k127_1159964_13 Transcriptional regulator - - - 0.000000000000000000000000000005055 126.0
YYD2_k127_1159964_14 FeS assembly protein IscX - - - 0.00000000000000000000003876 104.0
YYD2_k127_1159964_2 5'-3' exonuclease, N-terminal resolvase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006457 421.0
YYD2_k127_1159964_3 Alcohol dehydrogenase GroES-like domain K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 420.0
YYD2_k127_1159964_4 serine-type peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 428.0
YYD2_k127_1159964_5 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009737 316.0
YYD2_k127_1159964_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 297.0
YYD2_k127_1159964_7 C-terminal domain of 1-Cys peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006268 238.0
YYD2_k127_1159964_8 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000000000000000000000000000000000000000000000001809 233.0
YYD2_k127_1159964_9 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000008479 213.0
YYD2_k127_1166500_0 ATP-dependent peptidase activity K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 291.0
YYD2_k127_1166500_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000001501 93.0
YYD2_k127_1167769_0 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 377.0
YYD2_k127_1167769_1 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 293.0
YYD2_k127_1167769_2 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001693 258.0
YYD2_k127_1167769_3 ADP-glyceromanno-heptose 6-epimerase activity K01784,K02473 - 5.1.3.2,5.1.3.7 0.0000000000000000000000000000002942 126.0
YYD2_k127_1169320_0 - - - - 0.0000000000000000003847 98.0
YYD2_k127_1169320_1 - - - - 0.000000000000001904 81.0
YYD2_k127_1169320_2 - - - - 0.00000000000000434 87.0
YYD2_k127_1169320_3 cellulase activity K01183,K01728 - 3.2.1.14,4.2.2.2 0.0000002704 62.0
YYD2_k127_1183358_0 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003838 326.0
YYD2_k127_1183358_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004481 289.0
YYD2_k127_1183358_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000001161 133.0
YYD2_k127_1183358_4 Beta-lactamase - - - 0.000000000000000001104 91.0
YYD2_k127_1183358_5 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000003947 70.0
YYD2_k127_1183981_0 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001898 278.0
YYD2_k127_1183981_1 Cytochrome P460 - - - 0.0000000000000000000000000000000000000000000001434 178.0
YYD2_k127_1183981_2 Oxidoreductase FAD-binding domain K00523,K05784 - 1.17.1.1 0.0000000000000000000000000000000000000128 146.0
YYD2_k127_1183981_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000001146 149.0
YYD2_k127_1183981_4 epoxide hydrolase - - - 0.000000000001206 71.0
YYD2_k127_1202230_0 glutamine synthetase K01915 - 6.3.1.2 7.077e-241 752.0
YYD2_k127_1202230_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 1.39e-217 693.0
YYD2_k127_1202230_2 Peptidase M50 K16922 - - 3.337e-208 666.0
YYD2_k127_1202230_3 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 419.0
YYD2_k127_1202230_4 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000447 257.0
YYD2_k127_1202230_5 peptidase - - - 0.000000000000000000000000000000000000000000000000000546 207.0
YYD2_k127_1202230_6 outer membrane efflux protein - - - 0.00000000000000006926 94.0
YYD2_k127_1202230_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000001148 81.0
YYD2_k127_1212397_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006414 473.0
YYD2_k127_1212397_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007776 454.0
YYD2_k127_1212397_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007044 285.0
YYD2_k127_1212397_3 Belongs to the MlaE permease family K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005385 267.0
YYD2_k127_1212397_4 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000009122 267.0
YYD2_k127_1212397_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000003115 181.0
YYD2_k127_1212397_6 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.000000000000000000000000000000000000001991 159.0
YYD2_k127_1212397_7 PASTA domain K12132 - 2.7.11.1 0.00000000000000000000000000002868 126.0
YYD2_k127_1212397_8 cheY-homologous receiver domain - - - 0.00000000000000000000000000004095 129.0
YYD2_k127_1229447_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.315e-215 677.0
YYD2_k127_1229447_1 B12 binding domain - - - 1.097e-206 655.0
YYD2_k127_1229447_10 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000008016 226.0
YYD2_k127_1229447_11 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000592 175.0
YYD2_k127_1229447_12 Amidohydrolase family - - - 0.000000000000000000000000000000000000000019 166.0
YYD2_k127_1229447_13 - - - - 0.0000000000000003503 88.0
YYD2_k127_1229447_14 O-methyltransferase activity - - - 0.000000000001328 78.0
YYD2_k127_1229447_15 lipolytic protein G-D-S-L family - - - 0.0000003902 61.0
YYD2_k127_1229447_2 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008374 612.0
YYD2_k127_1229447_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006247 567.0
YYD2_k127_1229447_4 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 528.0
YYD2_k127_1229447_5 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 486.0
YYD2_k127_1229447_6 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 363.0
YYD2_k127_1229447_7 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 351.0
YYD2_k127_1229447_8 FtsZ-dependent cytokinesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006789 327.0
YYD2_k127_1229447_9 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000009381 250.0
YYD2_k127_1230066_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 381.0
YYD2_k127_1230066_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000002073 231.0
YYD2_k127_1233656_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1360.0
YYD2_k127_1233656_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 582.0
YYD2_k127_1233656_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000456 402.0
YYD2_k127_1233656_3 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000004161 203.0
YYD2_k127_1233656_4 HD domain - - - 0.00000000000000000000000000000000000000000000004275 190.0
YYD2_k127_1233656_5 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000002585 131.0
YYD2_k127_1233656_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000002162 126.0
YYD2_k127_1233656_7 ADP binding K10407 - - 0.00000000000000000000000003784 121.0
YYD2_k127_1233656_8 - - - - 0.00000000002714 76.0
YYD2_k127_1233656_9 DNA topological change - - - 0.0000000003381 68.0
YYD2_k127_1263943_0 PFAM Peptidase M16 K07263 - - 2.825e-307 966.0
YYD2_k127_1263943_1 DNA topological change K03168 - 5.99.1.2 5.831e-241 768.0
YYD2_k127_1263943_10 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000015 266.0
YYD2_k127_1263943_11 response to heat K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000003812 232.0
YYD2_k127_1263943_12 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000004424 174.0
YYD2_k127_1263943_13 decarboxylase K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000004921 179.0
YYD2_k127_1263943_14 PFAM NHL repeat containing protein - - - 0.000000000000000000005293 97.0
YYD2_k127_1263943_2 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 435.0
YYD2_k127_1263943_3 PFAM filamentation induced by cAMP protein Fic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 428.0
YYD2_k127_1263943_4 Major facilitator Superfamily K08195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 352.0
YYD2_k127_1263943_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 338.0
YYD2_k127_1263943_6 Domain of unknown function (DUF4166) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007799 338.0
YYD2_k127_1263943_7 TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 322.0
YYD2_k127_1263943_8 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007316 311.0
YYD2_k127_1263943_9 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000619 284.0
YYD2_k127_1264787_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 4.176e-261 839.0
YYD2_k127_1264787_1 Amidohydrolase K03392,K10220 - 4.1.1.45,4.2.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 550.0
YYD2_k127_1264787_2 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 362.0
YYD2_k127_1264787_3 Domain of unknown function (DUF1932) K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000682 219.0
YYD2_k127_1264787_4 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000002402 228.0
YYD2_k127_1264787_5 Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3- dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2- hydroxy-6-ketononatrienedioate, respectively K04099,K04101 - 1.13.11.57,1.13.11.8 0.000000000000000000000000000000000000000000000000000000005645 207.0
YYD2_k127_1264787_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000005216 144.0
YYD2_k127_1264787_7 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02052 - 3.6.3.30 0.0000000000000000000000155 101.0
YYD2_k127_1278844_0 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000001169 268.0
YYD2_k127_1278844_1 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000001788 139.0
YYD2_k127_1278844_2 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000003221 128.0
YYD2_k127_1278844_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000005646 64.0
YYD2_k127_1309046_0 transmembrane transporter activity K03296 - - 0.0 1187.0
YYD2_k127_1328261_0 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004054 260.0
YYD2_k127_1328261_1 PFAM PDZ domain (Also known as DHR or GLGF) - - - 0.000000000000000000000000000000000000000000000000000000000000004983 227.0
YYD2_k127_1328261_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000005788 188.0
YYD2_k127_1328261_3 Bacterial regulatory proteins, luxR family - - - 0.0000000000000000000000000000309 125.0
YYD2_k127_1328261_4 Peptidase family M1 domain - - - 0.0000000000000000000000001593 122.0
YYD2_k127_1330410_0 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008994 381.0
YYD2_k127_1330410_1 Periplasmic binding proteins and sugar binding domain of LacI family K10439,K17202,K17205,K17213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 376.0
YYD2_k127_1330410_2 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002364 273.0
YYD2_k127_1330410_3 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000008513 261.0
YYD2_k127_1330410_4 Methyltransferase K15256 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001819 265.0
YYD2_k127_1330410_5 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000000000000000000000000000000006323 252.0
YYD2_k127_1330410_6 Belongs to the binding-protein-dependent transport system permease family K10440,K17214 - - 0.0000000000000000000000000000000000000000000000004166 178.0
YYD2_k127_1330410_7 - - - - 0.000000000000000000000000000000000000007225 147.0
YYD2_k127_1333514_0 ASPIC and UnbV - - - 6.57e-313 996.0
YYD2_k127_1333514_1 ASPIC and UnbV - - - 1.117e-226 714.0
YYD2_k127_1333514_2 Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000001909 240.0
YYD2_k127_1341195_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 2.116e-288 900.0
YYD2_k127_1341195_1 transcription factor binding K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 550.0
YYD2_k127_1341195_10 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000003421 130.0
YYD2_k127_1341195_12 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000002669 91.0
YYD2_k127_1341195_2 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007674 507.0
YYD2_k127_1341195_3 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 466.0
YYD2_k127_1341195_4 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 414.0
YYD2_k127_1341195_5 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 396.0
YYD2_k127_1341195_6 protein catabolic process K03420,K13525,K17681 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003972 368.0
YYD2_k127_1341195_7 HlyD family secretion protein K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 323.0
YYD2_k127_1341195_8 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 302.0
YYD2_k127_1341195_9 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000009762 175.0
YYD2_k127_1359357_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 4.4e-323 1006.0
YYD2_k127_1359357_1 TonB dependent receptor - - - 1.868e-205 661.0
YYD2_k127_1359357_10 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000001155 156.0
YYD2_k127_1359357_11 Protein of unknown function (DUF3467) - - - 0.0000000000000000000000000000611 119.0
YYD2_k127_1359357_12 - - - - 0.000002251 55.0
YYD2_k127_1359357_2 multicopper - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 521.0
YYD2_k127_1359357_3 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007645 553.0
YYD2_k127_1359357_4 Hypothetical methyltransferase K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007406 405.0
YYD2_k127_1359357_5 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 372.0
YYD2_k127_1359357_6 peptidylprolyl isomerase, FKBP-type K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000001223 234.0
YYD2_k127_1359357_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000002446 199.0
YYD2_k127_1359357_8 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000000006199 173.0
YYD2_k127_1359357_9 hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000001094 163.0
YYD2_k127_1362360_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147 GO:0000175,GO:0000178,GO:0000932,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354,GO:1990904 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 376.0
YYD2_k127_1362360_1 - - - - 0.00000000000000000000000000000000007993 151.0
YYD2_k127_1362360_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000006982 64.0
YYD2_k127_1380350_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005313 454.0
YYD2_k127_1380350_1 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001025 261.0
YYD2_k127_1380350_2 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.000000000000000000000000000000000000000000000000000000000000000000000000682 259.0
YYD2_k127_1380350_3 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K01838 - 5.4.2.6 0.0000000000000000000000000000003277 128.0
YYD2_k127_138100_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 473.0
YYD2_k127_138100_1 ATPase activity K01990,K09697 - 3.6.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 354.0
YYD2_k127_138100_10 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000002185 214.0
YYD2_k127_138100_11 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000005114 182.0
YYD2_k127_138100_12 Protein of unknown function (DUF3237) - - - 0.00000000000000000000000000000000000000001847 157.0
YYD2_k127_138100_13 Belongs to the asparaginase 1 family K01424 - 3.5.1.1 0.0000000000000000000000000000000000000001024 167.0
YYD2_k127_138100_14 Domain of unknown function (DUF3806) - - - 0.000000000000000000000000000000000000005375 150.0
YYD2_k127_138100_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000002468 150.0
YYD2_k127_138100_16 - - - - 0.000000000000000000000000000009522 123.0
YYD2_k127_138100_17 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000005784 113.0
YYD2_k127_138100_18 Sigma-70, region 4 K03088 - - 0.0000000000000000001184 95.0
YYD2_k127_138100_19 Domain of unknown function (DUF4340) - - - 0.0000000000000001595 93.0
YYD2_k127_138100_2 ABC-type uncharacterized transport system K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 339.0
YYD2_k127_138100_21 - - - - 0.00000001867 63.0
YYD2_k127_138100_22 - - - - 0.000006514 53.0
YYD2_k127_138100_3 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 317.0
YYD2_k127_138100_4 formate dehydrogenase (NAD+) activity K00336,K18006 - 1.12.1.2,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 323.0
YYD2_k127_138100_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002355 295.0
YYD2_k127_138100_6 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005092 272.0
YYD2_k127_138100_7 MOSC domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002265 260.0
YYD2_k127_138100_8 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007248 263.0
YYD2_k127_138100_9 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001006 248.0
YYD2_k127_1392254_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 3.875e-203 647.0
YYD2_k127_1392254_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 377.0
YYD2_k127_1392254_2 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000007493 194.0
YYD2_k127_1392254_3 Belongs to the SOS response-associated peptidase family - - - 0.000000000003408 72.0
YYD2_k127_1440133_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 7.486e-218 691.0
YYD2_k127_1440133_1 DNA topological change K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000307 324.0
YYD2_k127_1440133_2 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.00000000000000000000000000000000000000000000005325 175.0
YYD2_k127_1444288_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000006643 243.0
YYD2_k127_1444288_1 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000004275 121.0
YYD2_k127_1444288_2 Belongs to the GSP D family K02453 - - 0.000000000001372 81.0
YYD2_k127_1449413_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 5.027e-276 857.0
YYD2_k127_1449413_1 Periplasmic binding protein domain K11959 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 415.0
YYD2_k127_1449413_10 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000009452 245.0
YYD2_k127_1449413_11 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000002359 186.0
YYD2_k127_1449413_12 COG4422 Bacteriophage protein gp37 - - - 0.00000000000000000000000000000000000000000000114 180.0
YYD2_k127_1449413_13 response regulator K07685 - - 0.0000000000000000000000000000000000000000003472 168.0
YYD2_k127_1449413_14 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000004112 153.0
YYD2_k127_1449413_15 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.0000000000000000000000000000000000000004381 153.0
YYD2_k127_1449413_16 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000004898 117.0
YYD2_k127_1449413_17 UreD urease accessory protein K03190 - - 0.000000000000000000000000522 115.0
YYD2_k127_1449413_18 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.000000000000000000000008387 109.0
YYD2_k127_1449413_19 UreE urease accessory protein, N-terminal domain K03187 - - 0.00000000000009827 78.0
YYD2_k127_1449413_2 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000575 340.0
YYD2_k127_1449413_20 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000003381 73.0
YYD2_k127_1449413_22 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000006531 65.0
YYD2_k127_1449413_3 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007896 311.0
YYD2_k127_1449413_4 Branched-chain amino acid transport system / permease component K01995,K01998,K11961 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 325.0
YYD2_k127_1449413_5 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 298.0
YYD2_k127_1449413_6 TIGRFAM MazG family protein K02428,K04765 - 3.6.1.66,3.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001001 282.0
YYD2_k127_1449413_7 Urea ABC transporter ATP-binding protein K11963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001891 268.0
YYD2_k127_1449413_8 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000915 261.0
YYD2_k127_1449413_9 TIGRFAM urea ABC transporter, ATP-binding protein UrtD K11962 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001024 260.0
YYD2_k127_1456502_0 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 507.0
YYD2_k127_1456502_1 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006513 488.0
YYD2_k127_1456502_2 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000009377 224.0
YYD2_k127_1456502_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000005566 108.0
YYD2_k127_1473451_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 8.379e-249 775.0
YYD2_k127_1473451_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 5.61e-230 719.0
YYD2_k127_1473451_2 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 580.0
YYD2_k127_1473451_3 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 376.0
YYD2_k127_1473451_4 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 340.0
YYD2_k127_1473451_5 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 308.0
YYD2_k127_1473451_6 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000000000000001761 163.0
YYD2_k127_1473451_7 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000000000000000000000000000000002804 144.0
YYD2_k127_1473451_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000002416 135.0
YYD2_k127_1481804_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 491.0
YYD2_k127_1481804_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 474.0
YYD2_k127_1481804_10 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000000003131 161.0
YYD2_k127_1481804_11 binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000006017 156.0
YYD2_k127_1481804_12 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000009994 144.0
YYD2_k127_1481804_13 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000006008 134.0
YYD2_k127_1481804_14 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000008557 92.0
YYD2_k127_1481804_15 Ribosomal protein L30 K02907 - - 0.000000000000001671 80.0
YYD2_k127_1481804_16 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000002985 72.0
YYD2_k127_1481804_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 291.0
YYD2_k127_1481804_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000176 267.0
YYD2_k127_1481804_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000009521 222.0
YYD2_k127_1481804_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000002086 205.0
YYD2_k127_1481804_6 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.00000000000000000000000000000000000000000000000000003541 196.0
YYD2_k127_1481804_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000001559 189.0
YYD2_k127_1481804_8 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000001345 185.0
YYD2_k127_1481804_9 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000223 185.0
YYD2_k127_1484949_0 Carboxyl transferase domain K01969 - 6.4.1.4 1.015e-231 728.0
YYD2_k127_1484949_1 TLC ATP/ADP transporter K03301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001191 284.0
YYD2_k127_1484949_2 Cobalamin B12-binding K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000003418 196.0
YYD2_k127_1484949_3 PFAM thioesterase superfamily K07107 - - 0.0000000000000000000000000000000005363 135.0
YYD2_k127_1484949_4 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000006425 109.0
YYD2_k127_1484949_5 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.00000000003949 75.0
YYD2_k127_1488816_0 Putative glucoamylase - - - 3.794e-210 662.0
YYD2_k127_1488816_1 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000533 207.0
YYD2_k127_149421_1 type III restriction enzyme, res subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 336.0
YYD2_k127_149421_2 PFAM cytochrome P450 - - - 0.00000000000000000000000000000000005529 141.0
YYD2_k127_1497064_0 ATP-dependent helicase C-terminal K03579 - 3.6.4.13 2.859e-258 815.0
YYD2_k127_1497064_1 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 532.0
YYD2_k127_1497064_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 413.0
YYD2_k127_1497064_3 Putative esterase K07214 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008251 377.0
YYD2_k127_1497064_4 ABC-2 type transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 338.0
YYD2_k127_1497064_5 Pseudouridine synthase K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000005269 252.0
YYD2_k127_1497064_6 - - - - 0.000000000000000000000000000000000000000000000000000001208 204.0
YYD2_k127_1497064_7 PFAM Ribonuclease BN-like family K07058 - - 0.000000000000000000000000000000000000000011 164.0
YYD2_k127_1497064_8 Domain of unknown function (DUF4139) - - - 0.0000006305 55.0
YYD2_k127_1510430_0 oxidase, subunit K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008258 347.0
YYD2_k127_1510430_1 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 323.0
YYD2_k127_1510430_2 SMP-30/Gluconolaconase/LRE-like region - - - 0.00000000000000000000000000001222 134.0
YYD2_k127_1510430_3 Amidohydrolase family - - - 0.000000000000000000000000000131 129.0
YYD2_k127_1520825_0 repeat protein - - - 3.936e-214 685.0
YYD2_k127_1520825_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 593.0
YYD2_k127_1520825_2 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008588 531.0
YYD2_k127_1520825_3 Carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 409.0
YYD2_k127_1520825_4 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000007982 133.0
YYD2_k127_1520825_5 PIN domain - - - 0.00000000000000000000000006825 111.0
YYD2_k127_1520825_6 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000002662 59.0
YYD2_k127_1521064_0 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000000000000000000000000001858 222.0
YYD2_k127_1521064_1 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000003585 198.0
YYD2_k127_1550079_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 340.0
YYD2_k127_1550079_1 acr, cog1565 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008338 339.0
YYD2_k127_1550079_2 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 329.0
YYD2_k127_1550079_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000004778 201.0
YYD2_k127_1550079_4 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000003499 144.0
YYD2_k127_1550079_5 - - - - 0.000000000000000000000007154 110.0
YYD2_k127_1550723_0 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 302.0
YYD2_k127_1550723_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000001999 191.0
YYD2_k127_1550723_2 Protein of unknown function with PCYCGC motif - - - 0.000000000000002293 81.0
YYD2_k127_1567652_0 PFAM Cytochrome c assembly protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 615.0
YYD2_k127_1567652_1 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000001172 179.0
YYD2_k127_1567652_2 PFAM DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000006983 134.0
YYD2_k127_1567652_3 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000005739 123.0
YYD2_k127_1567652_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000001097 97.0
YYD2_k127_1567652_5 Cytochrome P460 - - - 0.000000000000001944 88.0
YYD2_k127_1567652_6 Vitamin k epoxide reductase - - - 0.00000000001742 70.0
YYD2_k127_1567652_7 Belongs to the transketolase family K00615 - 2.2.1.1 0.0001125 55.0
YYD2_k127_1570967_0 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 1.785e-238 741.0
YYD2_k127_1570967_1 Amino-acid N-acetyltransferase K14682 - 2.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 520.0
YYD2_k127_1570967_2 WD40 repeats - - - 0.000000000000000002437 90.0
YYD2_k127_1573929_0 Spermine/spermidine synthase domain - - - 2.264e-251 801.0
YYD2_k127_1573929_1 PFAM NAD dependent epimerase dehydratase family K12454 - 5.1.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 572.0
YYD2_k127_1573929_10 Rhodanese Homology Domain K01069 - 3.1.2.6 0.00000000000002274 78.0
YYD2_k127_1573929_11 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000003524 75.0
YYD2_k127_1573929_12 Insulinase (Peptidase family M16) - - - 0.0003855 43.0
YYD2_k127_1573929_2 COG0463 Glycosyltransferases involved in cell wall K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 407.0
YYD2_k127_1573929_3 Male sterility protein K12454 - 5.1.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 368.0
YYD2_k127_1573929_4 dimethylargininase activity K01478 - 3.5.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008073 281.0
YYD2_k127_1573929_5 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000001264 222.0
YYD2_k127_1573929_6 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000003354 174.0
YYD2_k127_1573929_7 PFAM Peptidase family M28 - - - 0.00000000000000000000000000000007425 138.0
YYD2_k127_1573929_8 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000542 128.0
YYD2_k127_1591585_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 418.0
YYD2_k127_1591585_1 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.00000000000000000000000000000000001477 140.0
YYD2_k127_1591585_2 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000001487 139.0
YYD2_k127_1591585_3 NHL repeat - - - 0.0000000000001305 82.0
YYD2_k127_1599642_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.729e-313 972.0
YYD2_k127_1599642_1 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 455.0
YYD2_k127_1599642_2 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000004917 224.0
YYD2_k127_160079_0 ASPIC and UnbV - - - 1.667e-268 837.0
YYD2_k127_160079_1 domain protein - - - 1.723e-196 632.0
YYD2_k127_160079_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 472.0
YYD2_k127_160079_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001922 267.0
YYD2_k127_160079_4 hydroperoxide reductase activity - - - 0.000000000000000000000000000000000000000000000000000000001162 204.0
YYD2_k127_1611532_0 Gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007571 580.0
YYD2_k127_1611532_1 Belongs to the glycosyl hydrolase 13 family K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007891 290.0
YYD2_k127_1611532_2 - - - - 0.0000000000000000000000000000000000000000000000000000000002968 212.0
YYD2_k127_1613435_0 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000005196 263.0
YYD2_k127_1613435_1 transposase IS66 K07484 - - 0.0000000000000000000000000000000000000000000000000000000000000002816 223.0
YYD2_k127_1613435_3 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000001864 89.0
YYD2_k127_1627975_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 5.932e-305 949.0
YYD2_k127_1627975_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 349.0
YYD2_k127_1627975_2 photosynthesis - - - 0.0000000000000000000000000000000000000000000000000000001197 200.0
YYD2_k127_1627975_3 Radical SAM superfamily - - - 0.00000000000000000000000000000000000000006388 160.0
YYD2_k127_1640366_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 422.0
YYD2_k127_1640366_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004697 304.0
YYD2_k127_1640366_2 Transketolase K00615 - 2.2.1.1 0.000000001333 68.0
YYD2_k127_1665002_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 563.0
YYD2_k127_1665002_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 519.0
YYD2_k127_1665002_2 dUTPase K01494 - 3.5.4.13 0.00000000002077 66.0
YYD2_k127_1667894_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 302.0
YYD2_k127_1667894_1 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000009332 171.0
YYD2_k127_1667894_2 - - - - 0.000000000000000000000009976 113.0
YYD2_k127_1667894_3 AhpC Tsa family - - - 0.00000000000000002012 89.0
YYD2_k127_1667894_4 - - - - 0.0000000000000005143 84.0
YYD2_k127_1667894_5 29 kDa ribonucleoprotein K11294 GO:0001101,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008187,GO:0008266,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009894,GO:0009895,GO:0009941,GO:0010033,GO:0010319,GO:0010468,GO:0010605,GO:0010608,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033993,GO:0034357,GO:0042221,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043489,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055035,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:0097305,GO:1901363,GO:1901700,GO:1902369 - 0.00000006016 57.0
YYD2_k127_1679642_0 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006247 479.0
YYD2_k127_1679642_1 proteasome-type protease K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 348.0
YYD2_k127_1679642_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 352.0
YYD2_k127_1679642_3 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 317.0
YYD2_k127_1679642_4 Removes 5-oxoproline from various penultimate amino acid residues except L-proline K01304 GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:1901564 3.4.19.3 0.00000000000000000000000000000000000000000000000000000000003679 213.0
YYD2_k127_1679642_5 - - - - 0.00000000000000000000000000000000000000000001854 173.0
YYD2_k127_1679642_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000003357 126.0
YYD2_k127_1679642_8 - - - - 0.00000000000000000000001509 105.0
YYD2_k127_1679642_9 - - - - 0.000000000000008983 84.0
YYD2_k127_1700015_0 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 1.009e-245 762.0
YYD2_k127_1700015_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 561.0
YYD2_k127_1700015_10 with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine K01664 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009108,GO:0009308,GO:0009309,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042398,GO:0042401,GO:0042430,GO:0042435,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.6.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006881 267.0
YYD2_k127_1700015_11 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000001487 265.0
YYD2_k127_1700015_12 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004339 273.0
YYD2_k127_1700015_13 Mo-molybdopterin cofactor metabolic process K03753,K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003431 265.0
YYD2_k127_1700015_14 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006723 269.0
YYD2_k127_1700015_15 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 GO:0003674,GO:0003824,GO:0008110,GO:0008483,GO:0016740,GO:0016769 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000005354 256.0
YYD2_k127_1700015_16 TIGRFAM phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000001612 246.0
YYD2_k127_1700015_17 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000003836 248.0
YYD2_k127_1700015_18 imidazoleglycerol-phosphate dehydratase K00817,K01089,K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.9,3.1.3.15,4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000163 238.0
YYD2_k127_1700015_19 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000002255 234.0
YYD2_k127_1700015_2 MviN-like protein K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 568.0
YYD2_k127_1700015_20 Phosphoribosyl-AMP cyclohydrolase K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000000000000000000000000005197 229.0
YYD2_k127_1700015_21 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000009815 212.0
YYD2_k127_1700015_22 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000001137 205.0
YYD2_k127_1700015_23 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765,K02502 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000009908 201.0
YYD2_k127_1700015_24 - - - - 0.0000000000000000000000000000000000000000001472 178.0
YYD2_k127_1700015_25 Penicillinase repressor - - - 0.000000000000000000000000000000004893 134.0
YYD2_k127_1700015_26 Peptidase family M48 - - - 0.000000000000000000000000000000904 136.0
YYD2_k127_1700015_27 von Willebrand factor, type A - - - 0.00000000000000000000000456 113.0
YYD2_k127_1700015_3 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 523.0
YYD2_k127_1700015_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 393.0
YYD2_k127_1700015_5 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 363.0
YYD2_k127_1700015_6 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 340.0
YYD2_k127_1700015_7 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 339.0
YYD2_k127_1700015_8 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 328.0
YYD2_k127_1700015_9 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007123 287.0
YYD2_k127_174239_0 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 617.0
YYD2_k127_174239_1 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 372.0
YYD2_k127_174239_2 PFAM major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008037 329.0
YYD2_k127_174239_3 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000000000000000004102 220.0
YYD2_k127_174239_4 - - - - 0.000000000000000000004524 106.0
YYD2_k127_174239_5 - - - - 0.000000000000000000537 98.0
YYD2_k127_174239_6 Methyltransferase type 11 - - - 0.00000000000000008015 85.0
YYD2_k127_174239_7 - - - - 0.0000000000000006731 84.0
YYD2_k127_174239_8 - - - - 0.0000000000186 76.0
YYD2_k127_1746883_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 4.952e-237 741.0
YYD2_k127_1746883_1 Sodium:sulfate symporter transmembrane region K14445 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000863 380.0
YYD2_k127_1746883_2 PFAM sodium K14445 - - 0.0000000000000000000000000000005179 138.0
YYD2_k127_1746883_3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000004105 60.0
YYD2_k127_1757308_0 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 310.0
YYD2_k127_1757308_1 Protein of unknown function (DUF1587) - - - 0.000000000000000000000000000000000000000000000004689 179.0
YYD2_k127_1757308_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000001348 99.0
YYD2_k127_1759062_0 MMPL family K03296 - - 0.0 1076.0
YYD2_k127_1759062_1 4-hydroxyphenylacetate 3-hydroxylase C terminal - - - 6.684e-308 946.0
YYD2_k127_1759062_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799,K21135 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 343.0
YYD2_k127_1759062_3 HupE / UreJ protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 296.0
YYD2_k127_1759062_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000003393 270.0
YYD2_k127_1759062_5 - - - - 0.000000000000000000000000000000002176 141.0
YYD2_k127_1778635_0 class II (D K K01876,K09759,K22503 - 6.1.1.12,6.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005056 576.0
YYD2_k127_1778646_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 5.473e-199 643.0
YYD2_k127_1778646_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 469.0
YYD2_k127_1778646_2 Tetratricopeptide repeat - - - 0.0000000000000000000001809 109.0
YYD2_k127_17870_0 peptidase K01354 - 3.4.21.83 5.41e-321 995.0
YYD2_k127_17870_1 PFAM Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 429.0
YYD2_k127_17870_2 PFAM Beta-lactamase K18988 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 411.0
YYD2_k127_17870_4 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000002232 114.0
YYD2_k127_1791565_0 Belongs to the glycosyl hydrolase 43 family K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 469.0
YYD2_k127_1807815_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 2.981e-254 792.0
YYD2_k127_1807815_1 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 2.559e-214 673.0
YYD2_k127_1807815_10 -O-antigen K02847,K13009 - - 0.00000000000000000000000000000000003911 154.0
YYD2_k127_1807815_11 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.00000000000000000000000006351 125.0
YYD2_k127_1807815_12 - - - - 0.00000000000000000000000009544 124.0
YYD2_k127_1807815_13 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000132 116.0
YYD2_k127_1807815_14 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.00000000000000007403 95.0
YYD2_k127_1807815_15 Polysaccharide biosynthesis protein - - - 0.000000000000206 83.0
YYD2_k127_1807815_16 PFAM lipopolysaccharide biosynthesis - - - 0.0000000008748 71.0
YYD2_k127_1807815_17 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.0001078 46.0
YYD2_k127_1807815_2 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 486.0
YYD2_k127_1807815_3 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004386 352.0
YYD2_k127_1807815_4 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 323.0
YYD2_k127_1807815_5 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 296.0
YYD2_k127_1807815_6 glucose phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000194 289.0
YYD2_k127_1807815_7 Penicillinase repressor - - - 0.0000000000000000000000000000000000000000009183 160.0
YYD2_k127_1807815_8 Uncharacterised nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000221 172.0
YYD2_k127_1807815_9 BlaR1 peptidase M56 - - - 0.00000000000000000000000000000000000009585 161.0
YYD2_k127_1830344_0 FAD binding domain K00481 - 1.14.13.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 507.0
YYD2_k127_1830344_1 SapC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 318.0
YYD2_k127_1830344_2 Tannase and feruloyl esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002066 264.0
YYD2_k127_1830344_3 RNA pseudouridylate synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000002488 197.0
YYD2_k127_1830344_4 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.00000000000000000000000000000000006263 148.0
YYD2_k127_1830344_5 FCD - - - 0.000000000000000000001365 103.0
YYD2_k127_183042_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 2.836e-305 945.0
YYD2_k127_183042_1 Aminotransferase class I and II K11358 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 543.0
YYD2_k127_183042_2 CBD_II K01179,K01183 - 3.2.1.14,3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006652 419.0
YYD2_k127_183042_3 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007129 308.0
YYD2_k127_183042_4 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 302.0
YYD2_k127_183042_5 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000005221 217.0
YYD2_k127_183042_6 Ankyrin repeats (many copies) - - - 0.00000000000000000000000000000000000000000000000001102 189.0
YYD2_k127_183042_7 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000008797 184.0
YYD2_k127_183042_8 response to heat K03668,K09914 - - 0.000000000000000000000000000000000000008847 156.0
YYD2_k127_1834477_0 Sugar (and other) transporter - - - 5.004e-216 679.0
YYD2_k127_1834477_1 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 - 3.1.3.77 0.00000000000000000000000000000000000000000000000000000000000005144 220.0
YYD2_k127_1834477_2 - - - - 0.0000000000000000000000000000000000000000000002045 175.0
YYD2_k127_1834477_3 protein tyrosine phosphatase - - - 0.00000000000000000000000000000003639 133.0
YYD2_k127_1834477_4 Domain of unknown function (DU1801) - - - 0.0000000000000000000000001871 109.0
YYD2_k127_1878083_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007095 509.0
YYD2_k127_1878083_1 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005337 427.0
YYD2_k127_1878083_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 337.0
YYD2_k127_1878083_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002452 276.0
YYD2_k127_1878083_4 ZIP Zinc transporter K07238,K16267 - - 0.0000000000000000000000000000000000000000000000000000000000000000001772 243.0
YYD2_k127_1878083_5 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000000006163 164.0
YYD2_k127_1878083_6 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.000000000000000000007153 94.0
YYD2_k127_1878083_7 RNA polymerase-binding protein DksA K06204 - - 0.0000000000000002613 84.0
YYD2_k127_1903306_0 PKD domain containing protein K01337,K20276,K21449 - 3.4.21.50 0.000000000000000000218 102.0
YYD2_k127_1903306_1 Arylsulfotransferase (ASST) - - - 0.00000002029 67.0
YYD2_k127_1903306_2 cell adhesion K20276 - - 0.00000002682 66.0
YYD2_k127_1904738_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007885 420.0
YYD2_k127_1904738_1 Required for morphogenesis under gluconeogenic growth conditions - - - 0.000000000000000000000000000000000000000001067 162.0
YYD2_k127_1904738_2 - - - - 0.000000000001869 69.0
YYD2_k127_1904832_0 WD40-like Beta Propeller Repeat - - - 1.85e-241 781.0
YYD2_k127_1904832_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 9.389e-201 642.0
YYD2_k127_1904832_10 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003447 274.0
YYD2_k127_1904832_11 NADPH-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000000000000000000000000001333 242.0
YYD2_k127_1904832_12 PFAM Fibronectin type III domain - - - 0.00000000000000000000000000000000000000000000000000000002434 226.0
YYD2_k127_1904832_13 Subtilase family - - - 0.0000000000000000000000000000000000000009302 171.0
YYD2_k127_1904832_14 - - - - 0.0000000000000000000001784 102.0
YYD2_k127_1904832_15 peptidoglycan-binding protein, lysm - - - 0.00000000000000000001286 94.0
YYD2_k127_1904832_16 Transcription factor zinc-finger K09981 - - 0.00000000000004392 76.0
YYD2_k127_1904832_17 Tetratricopeptide repeat - - - 0.0000000002218 74.0
YYD2_k127_1904832_18 metallopeptidase activity K08738,K20276 - - 0.000000008257 70.0
YYD2_k127_1904832_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002567 586.0
YYD2_k127_1904832_3 Dehydrogenase K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 535.0
YYD2_k127_1904832_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 469.0
YYD2_k127_1904832_5 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 423.0
YYD2_k127_1904832_6 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 400.0
YYD2_k127_1904832_7 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005854 371.0
YYD2_k127_1904832_8 PFAM Integrase catalytic region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 315.0
YYD2_k127_1904832_9 PFAM Glutamine cyclotransferase K00683 - 2.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004341 298.0
YYD2_k127_1911058_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378,K13380 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 573.0
YYD2_k127_1911058_1 Cupin domain - - - 0.00000000000000000000007097 102.0
YYD2_k127_1911058_2 von Willebrand factor, type A - - - 0.0000000000006216 81.0
YYD2_k127_1911058_4 PEP-CTERM motif - - - 0.000000625 58.0
YYD2_k127_1916212_0 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006614 560.0
YYD2_k127_1916212_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000009764 217.0
YYD2_k127_1916212_2 ABC-2 family transporter protein - - - 0.00000000000000000000000006011 115.0
YYD2_k127_1916212_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000005488 84.0
YYD2_k127_1919927_0 PFAM glycine cleavage T protein (aminomethyl transferase) - - - 2.014e-198 629.0
YYD2_k127_1919927_1 Catechol dioxygenase N terminus K03381 - 1.13.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003464 365.0
YYD2_k127_1919927_2 membrane-anchored protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001966 277.0
YYD2_k127_1919927_4 - - - - 0.0000000000000000000000000000000000000000000002336 186.0
YYD2_k127_1919927_6 - - - - 0.00000000000001517 86.0
YYD2_k127_1923185_0 GTP-binding protein TypA K06207 - - 2.496e-318 982.0
YYD2_k127_1923185_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 2.955e-196 626.0
YYD2_k127_1923185_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000003063 238.0
YYD2_k127_1923185_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000002796 206.0
YYD2_k127_192502_0 fructose 1,6-bisphosphate 1-phosphatase activity K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016043,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901135,GO:1901576 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319 433.0
YYD2_k127_192502_1 PFAM Type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 424.0
YYD2_k127_192502_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 367.0
YYD2_k127_192502_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 349.0
YYD2_k127_192502_4 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001366 287.0
YYD2_k127_192502_5 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004927 278.0
YYD2_k127_192502_6 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000001193 214.0
YYD2_k127_1933001_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 626.0
YYD2_k127_1933001_1 PIN domain - - - 0.0000000000000000000003779 100.0
YYD2_k127_1978535_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 394.0
YYD2_k127_1978535_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000001847 179.0
YYD2_k127_2002598_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004119 611.0
YYD2_k127_2002598_1 cytochrome K17230 - - 0.0000000000000000000000000000000000000000000000000000000000000000229 235.0
YYD2_k127_2002598_2 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000000000000000000001233 215.0
YYD2_k127_2002598_3 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000005793 233.0
YYD2_k127_2002598_4 Belongs to the UPF0502 family K09915 - - 0.0000000000000000000000000000000000000000000000000004224 197.0
YYD2_k127_2002598_5 lactoylglutathione lyase activity K03088 - - 0.000000000000000000000000000000000000000000000001102 183.0
YYD2_k127_2002598_6 - - - - 0.00000000000000000000001749 106.0
YYD2_k127_2007429_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 347.0
YYD2_k127_2007429_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000007924 190.0
YYD2_k127_2007429_2 Belongs to the IlvD Edd family K22396 - 4.2.1.82 0.0000000000000000000000000000000000000007635 153.0
YYD2_k127_2027071_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 5.71e-212 676.0
YYD2_k127_2027071_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006885 373.0
YYD2_k127_2027071_2 Planctomycete cytochrome C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000697 357.0
YYD2_k127_2027071_3 glucose sorbosone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009847 328.0
YYD2_k127_2027071_4 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000007285 194.0
YYD2_k127_2027071_5 protocatechuate 3,4-dioxygenase - - - 0.0000000000000000001006 104.0
YYD2_k127_2027071_6 protein conserved in bacteria K21470 - - 0.0000000008652 61.0
YYD2_k127_2037360_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 1.655e-227 723.0
YYD2_k127_2037360_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 4.281e-194 618.0
YYD2_k127_2037360_10 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000003499 186.0
YYD2_k127_2037360_11 TIGRFAM molybdenum cofactor synthesis - - - 0.00000000000000000000000000000000000000000007866 164.0
YYD2_k127_2037360_12 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000002504 155.0
YYD2_k127_2037360_13 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.00000000000000000000000000000000000003707 145.0
YYD2_k127_2037360_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000003189 127.0
YYD2_k127_2037360_2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 547.0
YYD2_k127_2037360_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007107 458.0
YYD2_k127_2037360_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 385.0
YYD2_k127_2037360_5 NADH ubiquinone oxidoreductase, 20 Kd subunit K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 282.0
YYD2_k127_2037360_6 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005204 269.0
YYD2_k127_2037360_7 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000007822 252.0
YYD2_k127_2037360_8 4Fe-4S dicluster domain K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000004661 196.0
YYD2_k127_2037360_9 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000004989 196.0
YYD2_k127_2072777_0 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002957 308.0
YYD2_k127_2072777_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000005312 137.0
YYD2_k127_2072777_2 PIN domain - - - 0.000000003385 61.0
YYD2_k127_2086138_0 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 304.0
YYD2_k127_2086138_1 - - - - 0.000000000000000000000000000000000002276 149.0
YYD2_k127_2086138_2 Catechol dioxygenase N terminus K03381 - 1.13.11.1 0.000000000000000000000000000000002128 134.0
YYD2_k127_2086138_3 - - - - 0.0000000000000000000000000000002137 136.0
YYD2_k127_2164524_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 9.938e-253 792.0
YYD2_k127_2164524_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 473.0
YYD2_k127_2164524_2 PFAM von Willebrand factor type A K07114,K12511 - - 0.00000000000000000000000000000000000000000000000000000000000000000002197 248.0
YYD2_k127_2164524_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000002963 222.0
YYD2_k127_2164524_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.000000000000000000000000000000000008333 139.0
YYD2_k127_2164524_5 Sortase family K07284 - 3.4.22.70 0.00000000000000000000000000000000001466 144.0
YYD2_k127_2164524_6 - - - - 0.0000000000000001825 88.0
YYD2_k127_2164524_7 - - - - 0.0000489 46.0
YYD2_k127_2166912_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 6.857e-204 653.0
YYD2_k127_2166912_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002019 261.0
YYD2_k127_2166912_2 pfam abc K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000239 257.0
YYD2_k127_2166912_3 Protein of unknown function (DUF2400) K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000003355 260.0
YYD2_k127_2166912_4 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 - - 0.00000000000000000000000000000000000000000000000000000000000001299 230.0
YYD2_k127_2166912_5 PFAM Haloacid dehalogenase domain protein hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000007184 207.0
YYD2_k127_2166912_6 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000003986 177.0
YYD2_k127_2166912_7 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.000000000000000000000179 100.0
YYD2_k127_2169590_0 amidase activity K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 577.0
YYD2_k127_2169590_1 response regulator K01768,K02584,K07183,K22010 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 434.0
YYD2_k127_2169590_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000004783 129.0
YYD2_k127_2169590_3 Cytochrome c - - - 0.00000000000003361 81.0
YYD2_k127_2170308_0 Peptidase dimerisation domain K13049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 484.0
YYD2_k127_2170308_1 P-type ATPase' K17686 - 3.6.3.54 0.000000028 61.0
YYD2_k127_2170308_2 Outer membrane efflux protein - - - 0.00000005833 64.0
YYD2_k127_2176258_0 class II (D K K01893 - 6.1.1.22 7.724e-197 623.0
YYD2_k127_2176258_1 L,D-transpeptidase catalytic domain K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007987 441.0
YYD2_k127_2176258_2 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009596 368.0
YYD2_k127_2176258_3 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000006769 59.0
YYD2_k127_2182416_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001278 267.0
YYD2_k127_2182416_1 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000003765 222.0
YYD2_k127_2182416_2 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.000000000000000000000001268 106.0
YYD2_k127_2182416_3 PFAM Histone deacetylase - - - 0.00000000000000000001111 97.0
YYD2_k127_2182416_4 Putative ABC exporter - - - 0.0000000000000002971 93.0
YYD2_k127_2182416_5 Protein of unknown function (DUF1800) - - - 0.0000000000001122 73.0
YYD2_k127_2182416_6 Uncharacterized protein family, UPF0114 - - - 0.00000000001109 71.0
YYD2_k127_2184561_0 Carboxypeptidase regulatory-like domain - - - 2.573e-319 1002.0
YYD2_k127_2184561_1 oxidoreductase activity - - - 9.714e-241 762.0
YYD2_k127_2184561_2 - - - - 0.0000000000009464 71.0
YYD2_k127_2199891_0 Protein of unknown function (DUF1573) - - - 2.679e-217 690.0
YYD2_k127_2199891_1 PFAM aminotransferase, class I and II K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 600.0
YYD2_k127_2199891_2 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 574.0
YYD2_k127_2199891_3 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 444.0
YYD2_k127_2199891_4 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004409 274.0
YYD2_k127_2199891_5 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000002434 153.0
YYD2_k127_2248092_0 DNA topological change K03168 - 5.99.1.2 1.29e-215 693.0
YYD2_k127_2248092_1 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 343.0
YYD2_k127_2248092_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001574 244.0
YYD2_k127_2248092_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000001714 92.0
YYD2_k127_2251198_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 0.0 1458.0
YYD2_k127_2251198_1 TIGRFAM Carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 467.0
YYD2_k127_2251198_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000009994 215.0
YYD2_k127_2265558_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000027 234.0
YYD2_k127_2265558_1 Domain of unknown function (DUF4416) - - - 0.00000000000000000000000000000000000000000000000000007972 192.0
YYD2_k127_2265558_2 HIT family K02503 - - 0.0000000000000000000000000000000000000000003418 160.0
YYD2_k127_2265558_3 glyoxalase III activity K00970 - 2.7.7.19 0.00000000000000000000000000001646 121.0
YYD2_k127_2265558_4 Dehydratase family - - - 0.0000000000000005353 87.0
YYD2_k127_2292901_0 dna ligase - - - 4.199e-223 697.0
YYD2_k127_2292901_1 ATP dependent DNA ligase C terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009067 565.0
YYD2_k127_2292901_2 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA K04799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 316.0
YYD2_k127_2292901_3 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000000207 229.0
YYD2_k127_2292901_4 - - - - 0.00000000000000000000000000000006776 130.0
YYD2_k127_2292901_5 uridine kinase - - - 0.0000000000000000000000000000002294 130.0
YYD2_k127_2292901_6 PFAM SNARE associated Golgi protein - - - 0.000000000000001358 83.0
YYD2_k127_2311475_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 444.0
YYD2_k127_2311475_1 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 338.0
YYD2_k127_2311475_2 Transduction Histidine Kinase K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000007697 205.0
YYD2_k127_2311475_3 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000008972 118.0
YYD2_k127_2311475_4 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000496 98.0
YYD2_k127_2311475_5 RNA recognition motif - - - 0.000000000000000002809 87.0
YYD2_k127_2311475_6 protein conserved in bacteria - - - 0.000001304 58.0
YYD2_k127_2341062_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000001725 211.0
YYD2_k127_2347590_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 7.075e-290 902.0
YYD2_k127_2347590_1 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000002483 94.0
YYD2_k127_237515_0 Belongs to the RtcB family K14415 - 6.5.1.3 2.668e-215 677.0
YYD2_k127_237515_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 530.0
YYD2_k127_237515_10 positive regulation of acetylcholine metabolic process K06910 - - 0.000000000000000000000000000000000000000000000000000000584 196.0
YYD2_k127_237515_11 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000008161 174.0
YYD2_k127_237515_12 DinB family - - - 0.000000000000000000000000000000000000000004216 159.0
YYD2_k127_237515_13 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000001781 132.0
YYD2_k127_237515_14 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000000000000000000000000002293 132.0
YYD2_k127_237515_15 Universal stress protein family - - - 0.0000000000000000000000000002885 119.0
YYD2_k127_237515_17 Universal stress protein - - - 0.000000000000000000004443 104.0
YYD2_k127_237515_18 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000001196 98.0
YYD2_k127_237515_19 PilT protein domain protein - - - 0.0000000000000000006177 91.0
YYD2_k127_237515_2 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 526.0
YYD2_k127_237515_20 Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - 0.00000000000000004215 87.0
YYD2_k127_237515_21 DinB family - - - 0.00000000000000009332 87.0
YYD2_k127_237515_22 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000001079 82.0
YYD2_k127_237515_23 Universal stress protein family - - - 0.00000000004841 74.0
YYD2_k127_237515_24 positive regulation of growth - - - 0.0001212 48.0
YYD2_k127_237515_26 YtxH-like protein - - - 0.0007236 47.0
YYD2_k127_237515_3 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 514.0
YYD2_k127_237515_4 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K00261,K00262 - 1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006503 419.0
YYD2_k127_237515_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 321.0
YYD2_k127_237515_6 Helix-hairpin-helix domain K04477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 292.0
YYD2_k127_237515_7 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000181 253.0
YYD2_k127_237515_8 AMP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000007257 233.0
YYD2_k127_237515_9 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000000000000000000000000003347 214.0
YYD2_k127_2418218_0 Pantothenic acid kinase K00867 GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 407.0
YYD2_k127_2418218_1 Ser Thr phosphatase family protein K03547 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 312.0
YYD2_k127_2418218_2 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000002987 234.0
YYD2_k127_2418218_3 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.000000000000000000000000000003392 122.0
YYD2_k127_2418218_4 PFAM Pentapeptide repeats (8 copies) - - - 0.000000003183 64.0
YYD2_k127_2452760_0 PFAM Glycoside hydrolase 15-related K01178 - 3.2.1.3 0.0 1009.0
YYD2_k127_2452760_1 Carboxypeptidase regulatory-like domain - - - 3.42e-208 697.0
YYD2_k127_2452760_2 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 561.0
YYD2_k127_2452760_3 metal-binding protein - - - 0.0000000000000000000000000000000000000000000002872 171.0
YYD2_k127_2452760_4 YjbR - - - 0.0000000000000000000000000000000000001991 145.0
YYD2_k127_245350_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 1.272e-197 627.0
YYD2_k127_245350_1 Ca-dependent carbohydrate-binding module xylan-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 360.0
YYD2_k127_245350_10 domain protein - - - 0.00000004907 63.0
YYD2_k127_245350_2 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009829 326.0
YYD2_k127_245350_3 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000667 264.0
YYD2_k127_245350_4 TIGRFAM cytochrome c nitrate reductase, small subunit K15876 - - 0.000000000000000000000000000000000000000000000000000000000004296 214.0
YYD2_k127_245350_5 - - - - 0.000000000000000000000000000000000000000000000006446 191.0
YYD2_k127_245350_6 - - - - 0.00000000000000000000000000001437 125.0
YYD2_k127_245350_7 gluconolactonase activity - - - 0.0000000000000000000000000001286 126.0
YYD2_k127_245350_8 PIN domain - - - 0.0000000000000000000003225 102.0
YYD2_k127_245350_9 domain protein - - - 0.00000002003 61.0
YYD2_k127_2456979_0 COG2801 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008793 263.0
YYD2_k127_2456979_1 Transposase K07497 - - 0.00000000000000000000007083 101.0
YYD2_k127_2456979_2 - - - - 0.0001872 48.0
YYD2_k127_2491399_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008179 439.0
YYD2_k127_2491399_1 DNA-templated transcription, initiation - - - 0.000000000000000000000000001532 119.0
YYD2_k127_2499163_0 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004743 297.0
YYD2_k127_2499163_1 slime layer polysaccharide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000009074 192.0
YYD2_k127_2499163_2 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000006611 182.0
YYD2_k127_2513265_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1104.0
YYD2_k127_2513265_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 414.0
YYD2_k127_2544195_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 4.887e-215 681.0
YYD2_k127_2544195_1 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 605.0
YYD2_k127_2544195_10 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 328.0
YYD2_k127_2544195_11 Polysaccharide biosynthesis protein K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000001517 225.0
YYD2_k127_2544195_12 PFAM von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000004023 218.0
YYD2_k127_2544195_13 Orotidine 5'-phosphate decarboxylase / HUMPS family K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000146 215.0
YYD2_k127_2544195_14 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000002084 204.0
YYD2_k127_2544195_15 AraC-like ligand binding domain - - - 0.00000000000000000000000000000000000000000000000000003105 189.0
YYD2_k127_2544195_16 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000004799 183.0
YYD2_k127_2544195_17 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000008422 159.0
YYD2_k127_2544195_18 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000001007 156.0
YYD2_k127_2544195_19 C4-type zinc ribbon domain K07164 - - 0.0000000000000000000000000000000000001618 151.0
YYD2_k127_2544195_2 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 535.0
YYD2_k127_2544195_20 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000005924 143.0
YYD2_k127_2544195_21 - - - - 0.000000002665 61.0
YYD2_k127_2544195_3 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 460.0
YYD2_k127_2544195_4 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 448.0
YYD2_k127_2544195_5 gluconolactonase activity K01053 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009184 443.0
YYD2_k127_2544195_6 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 370.0
YYD2_k127_2544195_7 Catalyzes the conversion of dihydroorotate to orotate K17828 - 1.3.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007613 340.0
YYD2_k127_2544195_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 337.0
YYD2_k127_2544195_9 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 317.0
YYD2_k127_2547878_0 Heat shock 70 kDa protein K04043 - - 1.847e-308 955.0
YYD2_k127_2547878_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 359.0
YYD2_k127_2547878_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 347.0
YYD2_k127_2547878_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000009792 164.0
YYD2_k127_2547878_4 MerR HTH family regulatory protein K13640 - - 0.000000000000000000000000000000000000006683 154.0
YYD2_k127_2547878_5 Domain of unknown function (DUF309) K09763 - - 0.00000000000006306 76.0
YYD2_k127_2547878_6 transglycosylase - - - 0.0000007194 59.0
YYD2_k127_2547878_7 Recombinase zinc beta ribbon domain - - - 0.000001016 57.0
YYD2_k127_255818_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K20974 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 414.0
YYD2_k127_255818_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000002245 182.0
YYD2_k127_255818_2 PFAM extracellular solute-binding protein family 1 K02020,K22003 - 5.3.3.7 0.000000000000000000000000000000000000000000001046 175.0
YYD2_k127_255818_3 TIGRFAM signal peptidase I K03100 - 3.4.21.89 0.00000000000000000000000000000008163 131.0
YYD2_k127_255818_4 Domain of unknown function (DUF4440) - - - 0.000001436 56.0
YYD2_k127_255818_5 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0002042 51.0
YYD2_k127_2572387_0 FAD dependent oxidoreductase K00109,K15736 - 1.1.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008705 535.0
YYD2_k127_2572387_1 Dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 473.0
YYD2_k127_2572387_2 MOSC domain K07140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007804 280.0
YYD2_k127_2572387_3 Small Multidrug Resistance protein K11741 - - 0.0000000000000000000000000000000000000000000005365 168.0
YYD2_k127_2572387_4 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000000000000000000000000000026 162.0
YYD2_k127_2572387_5 alcohol dehydrogenase K17760 - 1.1.9.1 0.0000000000000000000000000000000000000000275 159.0
YYD2_k127_2572387_6 - - - - 0.0000000000000000000000001967 119.0
YYD2_k127_2572387_7 - - - - 0.00000000000002892 75.0
YYD2_k127_2589033_0 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000002315 229.0
YYD2_k127_2589033_1 Two component transcriptional regulator, winged helix family K02483 - - 0.00000000000000000000000000000000000000000000000000000001634 203.0
YYD2_k127_2681515_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007389 608.0
YYD2_k127_2681515_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 608.0
YYD2_k127_2681515_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000000000000000000000000000000006505 210.0
YYD2_k127_2681515_3 O-Antigen ligase K18814 - - 0.00000000000000000000000000000000004035 149.0
YYD2_k127_2681515_4 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000000000000000005683 143.0
YYD2_k127_2681515_6 Biotin-requiring enzyme - - - 0.00000000000000000002289 100.0
YYD2_k127_2681515_7 Cupin 2, conserved barrel domain protein - - - 0.00000000000000919 79.0
YYD2_k127_2681515_8 Involved in the tonB-independent uptake of proteins K03641 - - 0.00001395 55.0
YYD2_k127_269662_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.044e-234 745.0
YYD2_k127_269662_1 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000001061 244.0
YYD2_k127_269662_2 Cupin 2, conserved barrel domain protein - - - 0.000000000003541 76.0
YYD2_k127_2698341_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 303.0
YYD2_k127_2698341_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.000000000000000000000000000000000000000001238 164.0
YYD2_k127_2698341_2 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000001265 120.0
YYD2_k127_2698341_3 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000001715 112.0
YYD2_k127_2698341_4 multi-organism process K03195 - - 0.0000000000000000002788 94.0
YYD2_k127_2698341_5 Sporulation and spore germination - - - 0.0000000000000000003402 98.0
YYD2_k127_2698341_6 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000265 91.0
YYD2_k127_2698341_7 AAA ATPase domain - - - 0.0000006713 56.0
YYD2_k127_2698341_8 Belongs to the P(II) protein family K04751,K04752 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000001777 55.0
YYD2_k127_2701141_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 475.0
YYD2_k127_2701141_1 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003109 460.0
YYD2_k127_2701141_2 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 462.0
YYD2_k127_2701141_3 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009068 392.0
YYD2_k127_2701141_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000009382 238.0
YYD2_k127_2701141_5 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.000000000000000000000000000000000000000000000000002498 188.0
YYD2_k127_2701141_6 outer membrane autotransporter barrel domain protein - - - 0.0000000000000000000000000000000000005159 147.0
YYD2_k127_2701141_7 Fe-S iron-sulfur cluster assembly protein, NifU family K04488 - - 0.0000000000000000000000000000000000009578 141.0
YYD2_k127_2701141_8 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000000001182 138.0
YYD2_k127_2701141_9 photosystem II stabilization K02237 - - 0.0000003559 58.0
YYD2_k127_2704282_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007844 263.0
YYD2_k127_2704282_1 Transcriptional regulator PadR-like family - - - 0.00000003289 55.0
YYD2_k127_2706059_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009771 635.0
YYD2_k127_2706059_1 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 412.0
YYD2_k127_2706059_2 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 330.0
YYD2_k127_2706059_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001244 263.0
YYD2_k127_2706059_4 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K02003,K09810 - - 0.0000000000000000000003101 98.0
YYD2_k127_273787_0 radical SAM domain protein - - - 3.047e-205 649.0
YYD2_k127_27444_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 9.092e-211 673.0
YYD2_k127_27444_1 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 578.0
YYD2_k127_27444_10 Protein of unknown function (DUF983) - - - 0.0000001184 60.0
YYD2_k127_27444_11 Erythromycin esterase K06880 - - 0.000402 51.0
YYD2_k127_27444_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 508.0
YYD2_k127_27444_3 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006883 380.0
YYD2_k127_27444_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 350.0
YYD2_k127_27444_5 SMART PAS domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 338.0
YYD2_k127_27444_6 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000002279 226.0
YYD2_k127_27444_7 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000004136 169.0
YYD2_k127_27444_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000003096 128.0
YYD2_k127_27444_9 plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000026 126.0
YYD2_k127_2758795_0 Amidase - - - 1.01e-237 757.0
YYD2_k127_2758795_1 DNA polymerase X K02347 - - 9.542e-200 637.0
YYD2_k127_2758795_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 509.0
YYD2_k127_2758795_3 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 434.0
YYD2_k127_2758795_4 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000007213 240.0
YYD2_k127_2758795_5 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides K08281 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0017144,GO:0019860,GO:0034641,GO:0042737,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000003751 231.0
YYD2_k127_2758795_6 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000003081 207.0
YYD2_k127_2758795_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000573 205.0
YYD2_k127_2758795_8 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000003148 211.0
YYD2_k127_2758795_9 - - - - 0.0000000000000000005266 93.0
YYD2_k127_2811990_0 DNA topological change K03168 - 5.99.1.2 1.152e-204 656.0
YYD2_k127_2811990_1 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 524.0
YYD2_k127_2811990_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 520.0
YYD2_k127_2811990_3 - - - - 0.000000000000000000000000000000000000005703 152.0
YYD2_k127_2833722_0 Tex-like protein N-terminal domain K06959 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 616.0
YYD2_k127_2833722_1 Acyl-CoA dehydrogenase, C-terminal domain K00248,K09478 - 1.3.8.1,1.3.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 541.0
YYD2_k127_2833722_2 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 368.0
YYD2_k127_2833722_3 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009499 332.0
YYD2_k127_2833722_4 membrane protein (homolog of Drosophila rhomboid) K19225 - 3.4.21.105 0.000000000000000000000000000000000000000000000009623 185.0
YYD2_k127_2842098_0 SNF2 Helicase protein - - - 0.0 1057.0
YYD2_k127_2842098_1 PQQ-like domain K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006595 506.0
YYD2_k127_2842098_3 SWIM zinc finger - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005156 285.0
YYD2_k127_2842098_4 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004934 273.0
YYD2_k127_2842098_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001776 239.0
YYD2_k127_2842098_6 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000008776 164.0
YYD2_k127_2848554_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.759e-285 893.0
YYD2_k127_2848554_1 ethanolamine catabolic process K04027 - - 0.0000000000000000000000000004236 114.0
YYD2_k127_2848554_2 SMART helix-turn-helix domain protein - - - 0.000000000000000000000003655 112.0
YYD2_k127_2848554_3 Tetratricopeptide repeat - - - 0.0000007854 61.0
YYD2_k127_2848554_4 SMART RNA-processing protein HAT helix repeating-containing protein - - - 0.000005247 58.0
YYD2_k127_2848554_5 peptidyl-tyrosine sulfation - - - 0.00005142 55.0
YYD2_k127_2853100_0 proline dipeptidase activity K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 450.0
YYD2_k127_2853100_1 PFAM Uncharacterised conserved protein UCP033563 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 382.0
YYD2_k127_2853100_2 aminopeptidase K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 297.0
YYD2_k127_2853100_3 heat shock protein DnaJ domain protein K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006323 279.0
YYD2_k127_2853100_4 May be involved in the transport of PQQ or its precursor to the periplasm K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004658 272.0
YYD2_k127_2853100_5 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 0.000000000000000000000000000000000000000000000000000008104 203.0
YYD2_k127_2853100_6 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.00000000000000000000000000000000000000000038 169.0
YYD2_k127_2853100_7 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides - - - 0.00000000000000000000000000000000000007627 142.0
YYD2_k127_2871854_0 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 1.674e-226 709.0
YYD2_k127_2871854_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 584.0
YYD2_k127_2871854_2 PFAM Integrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 345.0
YYD2_k127_2871854_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K01142,K10773 GO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033683,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.11.2,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001647 282.0
YYD2_k127_2871854_4 iron dependent repressor - - - 0.0000000000000000000000000000000000000000005382 164.0
YYD2_k127_2881774_0 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 505.0
YYD2_k127_2881774_1 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 400.0
YYD2_k127_2881774_2 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 5.3.1.6 0.0000000000000000000000000000000000000000000000000000000001611 210.0
YYD2_k127_2881774_3 nitrite reductase K00363 - 1.7.1.15 0.0000000000000000004907 90.0
YYD2_k127_2881774_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000009089 76.0
YYD2_k127_2883409_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 559.0
YYD2_k127_2883409_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003049 405.0
YYD2_k127_2883409_2 - - - - 0.00003168 53.0
YYD2_k127_2891005_0 ABC transporter, transmembrane K18890 - - 7.898e-200 637.0
YYD2_k127_2891005_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000547 440.0
YYD2_k127_2891005_2 lipoprotein localization to outer membrane K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000215 256.0
YYD2_k127_2891005_3 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000001965 190.0
YYD2_k127_2891005_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000007239 190.0
YYD2_k127_2891005_5 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000000000000000000000000000002161 147.0
YYD2_k127_2891005_6 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000001484 125.0
YYD2_k127_2911939_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 472.0
YYD2_k127_2911939_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 409.0
YYD2_k127_2911939_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000001598 237.0
YYD2_k127_2911939_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000002083 162.0
YYD2_k127_2930849_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 402.0
YYD2_k127_2930849_1 Asparaginase K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000002679 268.0
YYD2_k127_2930849_2 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000000000000000000000000000009253 222.0
YYD2_k127_2930849_3 MoaE protein K21142 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000006682 212.0
YYD2_k127_2930849_4 amino acid K03294 - - 0.00000000000000000000000000000000001328 140.0
YYD2_k127_2938335_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 513.0
YYD2_k127_2938335_1 Nuclease-related domain K07460 - - 0.00000000000000000002733 94.0
YYD2_k127_2938335_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000005436 67.0
YYD2_k127_2938335_3 - - - - 0.0003166 44.0
YYD2_k127_2938352_0 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 380.0
YYD2_k127_2938352_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006634 337.0
YYD2_k127_2938352_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001944 283.0
YYD2_k127_2938352_3 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002251 274.0
YYD2_k127_2938352_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000000000006466 235.0
YYD2_k127_2938352_5 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000711 171.0
YYD2_k127_2938352_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000518 156.0
YYD2_k127_2938352_7 membrane organization - - - 0.00000000000000000000001028 107.0
YYD2_k127_2938352_8 Retroviral aspartyl protease - - - 0.000000000000001027 90.0
YYD2_k127_2956029_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000001109 159.0
YYD2_k127_2956029_1 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000008367 119.0
YYD2_k127_29903_0 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000003826 224.0
YYD2_k127_29903_1 Transposase zinc-binding domain - - - 0.000000000000000000000000000000000000002172 157.0
YYD2_k127_29903_2 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000001145 81.0
YYD2_k127_29903_3 Carboxypeptidase regulatory-like domain - - - 0.0000000001135 68.0
YYD2_k127_29903_4 ubiE/COQ5 methyltransferase family K13623 - - 0.000008618 52.0
YYD2_k127_2996441_0 Carboxypeptidase regulatory-like domain - - - 4.914e-268 871.0
YYD2_k127_2996441_1 Male sterility protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003696 449.0
YYD2_k127_2996441_2 Peptidase, M20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000198 284.0
YYD2_k127_2996441_3 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000001262 195.0
YYD2_k127_2996441_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 - 3.5.4.1,3.5.4.33 0.000000000000000000000000000000000000000000000003315 176.0
YYD2_k127_2996441_5 LysM domain - - - 0.000008543 58.0
YYD2_k127_2996441_6 Recombinase zinc beta ribbon domain - - - 0.00007344 45.0
YYD2_k127_3004181_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 4.512e-209 664.0
YYD2_k127_3004181_1 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003741 452.0
YYD2_k127_3004181_10 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001991 271.0
YYD2_k127_3004181_11 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000009984 184.0
YYD2_k127_3004181_12 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000006191 170.0
YYD2_k127_3004181_13 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000007697 146.0
YYD2_k127_3004181_14 Haloacid dehalogenase-like hydrolase K07025,K20866 - 3.1.3.10 0.000000000000000000000000000003011 127.0
YYD2_k127_3004181_15 Smr domain - - - 0.000000000000000000000000000539 122.0
YYD2_k127_3004181_16 Hfq protein K03666 - - 0.000000000000000002557 87.0
YYD2_k127_3004181_17 nuclear chromosome segregation - - - 0.000000000002138 76.0
YYD2_k127_3004181_18 Pilus assembly protein PilX K02673 - - 0.000000003428 68.0
YYD2_k127_3004181_2 Putative glutamine amidotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004191 466.0
YYD2_k127_3004181_3 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 445.0
YYD2_k127_3004181_4 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 419.0
YYD2_k127_3004181_5 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 410.0
YYD2_k127_3004181_6 Tetratricopeptide repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 422.0
YYD2_k127_3004181_7 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 388.0
YYD2_k127_3004181_8 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 361.0
YYD2_k127_3004181_9 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 289.0
YYD2_k127_3020195_0 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 8.997e-233 738.0
YYD2_k127_3020195_1 arginine decarboxylase K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 599.0
YYD2_k127_3020195_10 shape-determining protein MreD K03571 - - 0.000000000000001405 83.0
YYD2_k127_3020195_2 cell shape determining protein MreB K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005336 538.0
YYD2_k127_3020195_3 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006744 521.0
YYD2_k127_3020195_4 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007231 457.0
YYD2_k127_3020195_5 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 433.0
YYD2_k127_3020195_6 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 316.0
YYD2_k127_3020195_7 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000004444 278.0
YYD2_k127_3020195_8 involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000004242 236.0
YYD2_k127_3020195_9 Rod shape-determining protein MreC K03570 - - 0.000000000000000000000000000000000007158 147.0
YYD2_k127_3026448_0 Type IV secretion-system coupling protein DNA-binding domain K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 508.0
YYD2_k127_3026448_1 PFAM type II secretion system protein E K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 423.0
YYD2_k127_3026448_2 phosphorelay signal transduction system - - - 0.0000000000006624 74.0
YYD2_k127_3052467_0 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 345.0
YYD2_k127_3052467_1 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 340.0
YYD2_k127_3052467_2 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.0000000000000000000000000000000000001973 143.0
YYD2_k127_3052467_3 tetraacyldisaccharide 4'-kinase activity K00912,K09791 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.1.130 0.00000000000000000002579 91.0
YYD2_k127_3054350_0 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 347.0
YYD2_k127_3054350_1 deaminated base DNA N-glycosylase activity K21929 GO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033958,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008702 274.0
YYD2_k127_3054350_2 - - - - 0.000000000000000000000000000000000000000000000000000007267 199.0
YYD2_k127_3054350_3 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000785 159.0
YYD2_k127_3054350_4 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000000003588 59.0
YYD2_k127_3090826_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 583.0
YYD2_k127_3090826_1 phosphorelay sensor kinase activity K07709,K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 431.0
YYD2_k127_3090826_2 GDP-mannose mannosyl hydrolase activity - - - 0.000000000000000000000000003443 115.0
YYD2_k127_3090826_3 SMART PDZ DHR GLGF domain protein - - - 0.00000000000000000000000004997 115.0
YYD2_k127_3098782_0 Glycosyltransferase, group 2 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005668 459.0
YYD2_k127_3098782_1 SpoIID LytB domain protein K06381 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 402.0
YYD2_k127_3098782_2 Domain of unknown function (DUF4922) - - - 0.0000000000000000000000000000000000000000000000000000009945 207.0
YYD2_k127_3098782_3 Protein of unknown function (DUF1460) - - - 0.000000000000000000000003722 110.0
YYD2_k127_3129909_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002284 264.0
YYD2_k127_3129909_1 - - - - 0.000000000000000000000000000000000000000000000000000000004365 215.0
YYD2_k127_3129909_2 phosphoprotein phosphatase activity - - - 0.00000000000000000000000000000000000000000000000263 186.0
YYD2_k127_3129909_3 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.000000000000000000000000000000000000000004986 165.0
YYD2_k127_3129909_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000001861 123.0
YYD2_k127_3129909_5 - - - - 0.0000000000000000000000000005123 126.0
YYD2_k127_3129909_6 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 0.000000000000000006889 83.0
YYD2_k127_3138954_0 Putative amidoligase enzyme (DUF2126) - - - 0.0 1720.0
YYD2_k127_3138954_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 5.135e-247 777.0
YYD2_k127_3181678_0 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 610.0
YYD2_k127_3181678_1 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 577.0
YYD2_k127_3181678_10 Alpha/beta hydrolase family K06889 - - 0.0000000000000000000000000000001123 136.0
YYD2_k127_3181678_11 - - - - 0.00000000000000000000000000000554 125.0
YYD2_k127_3181678_13 - - - - 0.0000000000000000004135 93.0
YYD2_k127_3181678_14 - - - - 0.0000000003905 70.0
YYD2_k127_3181678_15 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00003916 48.0
YYD2_k127_3181678_16 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00008195 55.0
YYD2_k127_3181678_2 - - - - 0.000000000000000000000000000000000000000000000000000004595 199.0
YYD2_k127_3181678_3 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000187 191.0
YYD2_k127_3181678_4 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.00000000000000000000000000000000000000000000000006467 190.0
YYD2_k127_3181678_5 Domain of unknown function (DUF4126) - - - 0.00000000000000000000000000000000000000000000324 170.0
YYD2_k127_3181678_6 Domain of unknown function (DUF4139) - - - 0.00000000000000000000000000000000000000006603 166.0
YYD2_k127_3181678_7 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00627 GO:0003674,GO:0003824,GO:0004742,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016407,GO:0016417,GO:0016418,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030523,GO:0031405,GO:0031406,GO:0032787,GO:0032991,GO:0033293,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681,GO:1902494,GO:1990204 2.3.1.12 0.0000000000000000000000000000000000001184 142.0
YYD2_k127_3181678_8 - - - - 0.0000000000000000000000000000000000001947 151.0
YYD2_k127_3181678_9 Domain of unknown function (DUF3291) - - - 0.0000000000000000000000000000000001602 139.0
YYD2_k127_3182654_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 487.0
YYD2_k127_3185678_0 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 420.0
YYD2_k127_3185678_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 312.0
YYD2_k127_3185678_10 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000001483 88.0
YYD2_k127_3185678_11 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000006732 80.0
YYD2_k127_3185678_12 Belongs to the GSP D family K02453 - - 0.0000000001692 66.0
YYD2_k127_3185678_13 Modulates RecA activity K03565 - - 0.00000009213 59.0
YYD2_k127_3185678_14 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000005551 58.0
YYD2_k127_3185678_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000001054 230.0
YYD2_k127_3185678_3 PFAM CBS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000372 233.0
YYD2_k127_3185678_4 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000000000000001262 167.0
YYD2_k127_3185678_5 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000000000000009883 156.0
YYD2_k127_3185678_6 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity K07471,K13652,K19056 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000009205 153.0
YYD2_k127_3185678_7 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000000002501 134.0
YYD2_k127_3185678_8 - - - - 0.00000000000000000000002668 106.0
YYD2_k127_3185678_9 Lipopolysaccharide-assembly - - - 0.00000000000000000005722 96.0
YYD2_k127_3200383_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009525 506.0
YYD2_k127_3200383_1 phenylalanyl-tRNA synthetase beta subunit K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 462.0
YYD2_k127_3200383_10 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000001579 98.0
YYD2_k127_3200383_11 Domain of unknown function (DU1801) - - - 0.00000000000000000022 89.0
YYD2_k127_3200383_12 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000007741 57.0
YYD2_k127_3200383_13 - - - - 0.000007835 51.0
YYD2_k127_3200383_2 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005668 313.0
YYD2_k127_3200383_3 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 315.0
YYD2_k127_3200383_4 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 298.0
YYD2_k127_3200383_5 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000004136 204.0
YYD2_k127_3200383_6 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000000000000000000000000005537 192.0
YYD2_k127_3200383_7 Belongs to the UPF0109 family K06960 - - 0.00000000000000000000000000000001848 127.0
YYD2_k127_3200383_8 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000002771 121.0
YYD2_k127_3200383_9 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000001143 99.0
YYD2_k127_3205679_0 Carboxypeptidase regulatory-like domain - - - 0.0 1088.0
YYD2_k127_3205679_1 lipolytic protein G-D-S-L family - - - 1.676e-222 700.0
YYD2_k127_3205679_2 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 482.0
YYD2_k127_3205679_3 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003811 446.0
YYD2_k127_3205679_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008594 332.0
YYD2_k127_3205679_5 PQQ-like domain K00117 - 1.1.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006725 304.0
YYD2_k127_3205679_6 Bile acid K03453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001196 275.0
YYD2_k127_3205679_7 PFAM glycosyl transferase family 39 K14340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001725 282.0
YYD2_k127_3205679_8 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000000000000000000000000003643 183.0
YYD2_k127_3205679_9 BON domain - - - 0.0000000000000000000000000000000000000009025 155.0
YYD2_k127_322605_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 344.0
YYD2_k127_322605_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000395 287.0
YYD2_k127_322605_2 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000000001345 216.0
YYD2_k127_322605_3 nucleotide metabolic process - - - 0.0000000000000000000000000000000000000000000000003846 183.0
YYD2_k127_322605_4 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000004475 100.0
YYD2_k127_322605_5 S-layer homology domain - - - 0.0000431 55.0
YYD2_k127_322605_6 Acetyltransferase (GNAT) domain - - - 0.0004058 52.0
YYD2_k127_3230676_0 Aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 8.788e-218 688.0
YYD2_k127_3230676_1 Molecular chaperone. Has ATPase activity K04079 GO:0000302,GO:0000303,GO:0000305,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0010035,GO:0016020,GO:0030312,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071450,GO:0071451,GO:0071944,GO:1901700,GO:1901701 - 4.623e-197 632.0
YYD2_k127_3230676_2 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 478.0
YYD2_k127_3230676_3 TIGRFAM sulfate adenylyltransferase, small subunit K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007609 459.0
YYD2_k127_3230676_4 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 415.0
YYD2_k127_3230676_5 major facilitator superfamily MFS_1 K08225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 342.0
YYD2_k127_3230676_6 PspA/IM30 family K03969 - - 0.00000000000000000001026 100.0
YYD2_k127_3235375_0 PFAM type II secretion system protein E K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 549.0
YYD2_k127_3235375_1 PFAM type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009156 500.0
YYD2_k127_3235375_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 470.0
YYD2_k127_3235375_3 Belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000411 402.0
YYD2_k127_3235375_4 Belongs to the Dps family K04047 - - 0.00000000000000000000000000000000000000000003622 168.0
YYD2_k127_3235375_5 Mechanosensitive ion channel K22044 - - 0.0000000000000000000009769 101.0
YYD2_k127_3235375_6 zinc-ribbon domain - - - 0.0000000000000000009074 94.0
YYD2_k127_3235375_7 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000005302 87.0
YYD2_k127_3256878_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1323.0
YYD2_k127_3256878_1 PFAM multicopper oxidase type K08100,K14588 - 1.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007114 469.0
YYD2_k127_3256878_2 N-acetylglucosaminylinositol deacetylase activity K01463 - - 0.00000000000000000000000000000000000000000000000000000000000000000002177 239.0
YYD2_k127_3256878_3 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000000000000000007785 183.0
YYD2_k127_3256878_4 dna ligase - - - 0.0000000000000000000000000000000000000354 145.0
YYD2_k127_3256878_5 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000001675 124.0
YYD2_k127_3256878_6 - - - - 0.000000000000000000000000002352 117.0
YYD2_k127_3256878_7 membrane K00389 - - 0.000000000000000009795 89.0
YYD2_k127_3260063_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.182e-211 669.0
YYD2_k127_3260063_1 - - - - 0.000000000000000000005083 98.0
YYD2_k127_3265682_0 efflux transmembrane transporter activity - - - 3.513e-209 681.0
YYD2_k127_3265682_1 PFAM Transcriptional regulator - - - 0.00000000000000000000000000005561 118.0
YYD2_k127_3265682_2 - - - - 0.00000001796 60.0
YYD2_k127_3265682_3 G8 - - - 0.00002902 50.0
YYD2_k127_327026_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18299,K18902 - - 6.145e-308 955.0
YYD2_k127_3278873_0 Belongs to the ABC transporter superfamily K02031,K02032 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 4.5e-321 996.0
YYD2_k127_3278873_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0022857,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043295,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0048037,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072341,GO:1900750,GO:1901681,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 605.0
YYD2_k127_3278873_2 N-terminal TM domain of oligopeptide transport permease C K02034 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000001275 128.0
YYD2_k127_3281448_0 Dehydrogenase K00117 - 1.1.5.2 3.517e-270 845.0
YYD2_k127_3281448_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 608.0
YYD2_k127_3281448_10 Heavy-metal resistance - - - 0.0000000000000000000000000000000008349 136.0
YYD2_k127_3281448_11 Tetratricopeptide repeat - - - 0.0000000000000003347 91.0
YYD2_k127_3281448_2 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 503.0
YYD2_k127_3281448_3 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 391.0
YYD2_k127_3281448_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 332.0
YYD2_k127_3281448_5 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000005386 239.0
YYD2_k127_3281448_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000006949 214.0
YYD2_k127_3281448_7 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000002675 177.0
YYD2_k127_3281448_8 - - - - 0.0000000000000000000000000000000000000000005794 175.0
YYD2_k127_3281448_9 BON domain - - - 0.00000000000000000000000000000000000383 144.0
YYD2_k127_3290700_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168,K18707 - 2.8.4.3,2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007866 334.0
YYD2_k127_3290700_1 proline dehydrogenase activity K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002463 306.0
YYD2_k127_3290700_10 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000005858 114.0
YYD2_k127_3290700_11 Smr domain - - - 0.000000000000000000002138 99.0
YYD2_k127_3290700_12 Putative phosphatase (DUF442) - - - 0.00000000000000000004489 96.0
YYD2_k127_3290700_13 Tetratricopeptide repeat - - - 0.000000000000002082 85.0
YYD2_k127_3290700_14 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.0000005419 54.0
YYD2_k127_3290700_2 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000002489 257.0
YYD2_k127_3290700_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000008646 241.0
YYD2_k127_3290700_4 response to copper ion K01187,K16915 - 3.2.1.20 0.0000000000000000000000000000000000000000000000000002249 197.0
YYD2_k127_3290700_5 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000001393 165.0
YYD2_k127_3290700_6 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000001437 163.0
YYD2_k127_3290700_7 - - - - 0.000000000000000000000000000000000001932 160.0
YYD2_k127_3290700_8 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.00000000000000000000000000000000001345 150.0
YYD2_k127_3290700_9 PFAM D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000000000000000000002904 143.0
YYD2_k127_3328096_0 asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 1.214e-221 703.0
YYD2_k127_3350758_0 Pyridine nucleotide-disulphide oxidoreductase - - - 5.113e-223 704.0
YYD2_k127_3350758_1 Oxidoreductase molybdopterin binding domain K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 371.0
YYD2_k127_3350758_2 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 310.0
YYD2_k127_3350758_3 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000000000000000158 228.0
YYD2_k127_3350758_4 Disulphide isomerase - - - 0.000000000000000000000000000000000000000000000000001629 186.0
YYD2_k127_3357024_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 447.0
YYD2_k127_3357024_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 370.0
YYD2_k127_3357024_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 312.0
YYD2_k127_3357024_3 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000002384 240.0
YYD2_k127_3357024_4 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000005937 223.0
YYD2_k127_3357024_5 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000009775 220.0
YYD2_k127_339493_0 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009138 532.0
YYD2_k127_339493_1 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 393.0
YYD2_k127_339493_10 Transcriptional regulator K13771 - - 0.000000000000000000000000000000000000000000001968 170.0
YYD2_k127_339493_11 - - - - 0.00000000000000000000000000000000000000000002045 166.0
YYD2_k127_339493_12 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000007523 148.0
YYD2_k127_339493_13 - - - - 0.00000000001699 72.0
YYD2_k127_339493_14 domain protein K14194 - - 0.00000002737 68.0
YYD2_k127_339493_2 peptidase activity K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 407.0
YYD2_k127_339493_3 Carbohydrate ABC transporter substrate-binding protein, CUT1 family K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 379.0
YYD2_k127_339493_4 ABC transporter K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 321.0
YYD2_k127_339493_5 Protein of unknown function (DUF4256) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 313.0
YYD2_k127_339493_6 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 298.0
YYD2_k127_339493_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002827 267.0
YYD2_k127_339493_8 PFAM Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000002236 213.0
YYD2_k127_339493_9 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000001001 176.0
YYD2_k127_3396558_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K05825 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 472.0
YYD2_k127_3396558_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 295.0
YYD2_k127_3396558_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000005489 214.0
YYD2_k127_3396558_3 ATP-dependent Clp protease adaptor protein ClpS K06891 - - 0.000000000000000000009296 95.0
YYD2_k127_3414284_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01874 - 6.1.1.10 1.404e-303 941.0
YYD2_k127_3414284_1 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000705 273.0
YYD2_k127_3414284_2 Possible lysine decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000009469 219.0
YYD2_k127_3414284_3 Ribosomal protein L17 K02879 - - 0.000000000000001269 79.0
YYD2_k127_3441692_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1012.0
YYD2_k127_3441692_1 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008736 301.0
YYD2_k127_3441692_2 Glyoxalase-like domain K08234 - - 0.00000000000000000000000000000000000000000000000000000001448 201.0
YYD2_k127_3441692_3 AAA domain - - - 0.000000000000000000000000000000000000000000000000000001205 199.0
YYD2_k127_3441692_4 Domain of unknown function (DUF1772) - - - 0.0000000000000000000000000000000000000000000000000002787 189.0
YYD2_k127_3441692_5 DinB family - - - 0.000000000000000000000000000000000000000000000000002889 186.0
YYD2_k127_3441692_6 - - - - 0.00000000000000005871 88.0
YYD2_k127_3441692_7 Penicillinase repressor - - - 0.000000000001523 69.0
YYD2_k127_347074_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203 368.0
YYD2_k127_347074_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000006061 255.0
YYD2_k127_347074_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001594 250.0
YYD2_k127_347074_4 YbbR-like protein - - - 0.00000000000000000000002326 108.0
YYD2_k127_347074_5 - - - - 0.00000000000005925 72.0
YYD2_k127_349390_0 Tetratricopeptide repeat - - - 1.867e-319 1015.0
YYD2_k127_349390_1 Tetratricopeptide repeat - - - 1.103e-212 681.0
YYD2_k127_349390_2 - - - - 0.000000000000000000000000000000000000000000002265 173.0
YYD2_k127_349390_3 MotA TolQ ExbB proton channel K03561,K03562 - - 0.0000000000000000000000000000000000000000007186 166.0
YYD2_k127_349390_4 Tetratricopeptide repeat - - - 0.00000000000000000000002356 118.0
YYD2_k127_349390_5 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.0000000000001438 76.0
YYD2_k127_349390_6 - - - - 0.000000000001337 74.0
YYD2_k127_349390_7 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000000003809 62.0
YYD2_k127_3496050_0 Putative glucoamylase - - - 0.0 1557.0
YYD2_k127_3496050_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 555.0
YYD2_k127_3496050_2 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005914 422.0
YYD2_k127_3496050_3 PFAM phosphoesterase, RecJ domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 343.0
YYD2_k127_3496050_4 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0016874,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.3.1.29 0.000000003166 59.0
YYD2_k127_349860_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 523.0
YYD2_k127_349860_1 succinyl-diaminopimelate desuccinylase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007955 526.0
YYD2_k127_349860_2 Involved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0042803,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 391.0
YYD2_k127_349860_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004209 257.0
YYD2_k127_349860_4 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000000000000000005138 231.0
YYD2_k127_349860_5 Protein of unknown function (DUF1161) - - - 0.000000000000002728 78.0
YYD2_k127_349860_6 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000004652 61.0
YYD2_k127_349860_7 PFAM GCN5-related N-acetyltransferase - - - 0.00006916 51.0
YYD2_k127_349860_8 - - - - 0.0009762 49.0
YYD2_k127_3499395_0 FecCD transport family K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 334.0
YYD2_k127_3499395_1 PFAM ABC transporter related K02013 - 3.6.3.34 0.00000000000000000000000402 112.0
YYD2_k127_3517362_0 TonB-dependent Receptor Plug Domain K02014 - - 4.478e-209 676.0
YYD2_k127_3517362_1 H( )-stimulated, divalent metal cation uptake system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004966 599.0
YYD2_k127_3517362_2 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952 500.0
YYD2_k127_3517362_3 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008702 282.0
YYD2_k127_3517362_4 sirohydrochlorin cobaltochelatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001063 267.0
YYD2_k127_3517362_5 SMP-30/Gluconolaconase/LRE-like region K01053,K13735 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000002304 219.0
YYD2_k127_3517362_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000001347 186.0
YYD2_k127_3517362_7 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000003122 169.0
YYD2_k127_3517362_9 CarboxypepD_reg-like domain - - - 0.00003329 51.0
YYD2_k127_3536159_0 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 505.0
YYD2_k127_3536159_1 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000856 344.0
YYD2_k127_3546213_0 TonB-dependent receptor K13735,K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005588 377.0
YYD2_k127_3546213_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001047 252.0
YYD2_k127_3557179_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003223 415.0
YYD2_k127_3557179_1 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000146 274.0
YYD2_k127_3557179_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000002602 176.0
YYD2_k127_3557179_3 DNA topological change K03168 - 5.99.1.2 0.000000000000000002678 91.0
YYD2_k127_3557358_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 386.0
YYD2_k127_3557358_1 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000009896 150.0
YYD2_k127_3557358_2 Highly conserved protein containing a thioredoxin domain K18581 - 3.2.1.180 0.0000003758 55.0
YYD2_k127_3557358_3 - - - - 0.000000763 55.0
YYD2_k127_3564800_0 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000001033 178.0
YYD2_k127_3564800_1 Glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.00000000000000000000000000000000000000000000251 168.0
YYD2_k127_3564800_2 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000323 166.0
YYD2_k127_3564800_3 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000002526 155.0
YYD2_k127_3564800_4 YjbR - - - 0.00000000000000000000000000000000000003073 152.0
YYD2_k127_3564800_5 helix_turn_helix, arabinose operon control protein - - - 0.00003744 48.0
YYD2_k127_3636315_0 PFAM sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 420.0
YYD2_k127_3636315_1 FMN binding K00104,K16422 - 1.1.3.15,1.1.3.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532 404.0
YYD2_k127_3636315_10 TIGRFAM VWFA-related Acidobacterial domain - - - 0.0000000002504 72.0
YYD2_k127_3636315_11 - - - - 0.0000005719 61.0
YYD2_k127_3636315_12 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.00002208 49.0
YYD2_k127_3636315_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 406.0
YYD2_k127_3636315_3 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 370.0
YYD2_k127_3636315_4 Protein of unknown function (DUF2585) - - - 0.00000000000000000000000000000000000000000000000002999 186.0
YYD2_k127_3636315_5 Carboxylesterase family - - - 0.00000000000000000000000000000000000000001475 165.0
YYD2_k127_3636315_6 membrane - - - 0.000000000000000000000000000000000007972 139.0
YYD2_k127_3636315_7 Large family of predicted nucleotide-binding domains - - - 0.00000000000000000000000000000007142 128.0
YYD2_k127_3636315_8 Carboxypeptidase regulatory-like domain - - - 0.00000000000003728 83.0
YYD2_k127_3636315_9 positive regulation of growth - - - 0.0000000000001404 72.0
YYD2_k127_3640197_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058 584.0
YYD2_k127_3640197_1 This stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form K07305 - 1.8.4.12 0.0000000000000000000004442 96.0
YYD2_k127_3640197_2 Belongs to the 'phage' integrase family - - - 0.0000000103 60.0
YYD2_k127_3640197_3 Phage integrase family - - - 0.00001029 52.0
YYD2_k127_3641175_0 TLC ATP/ADP transporter K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000024 274.0
YYD2_k127_3641175_1 Histidine kinase K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000005864 239.0
YYD2_k127_3641175_2 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000488 147.0
YYD2_k127_3641175_3 ATP ADP translocase K03301 - - 0.0000000000000000000000000006349 116.0
YYD2_k127_3641175_4 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000001653 84.0
YYD2_k127_3660516_0 Peptidase family M1 domain K01256,K13722 - 3.4.11.2 0.000000000000000009943 96.0
YYD2_k127_3660516_1 Protein of unknown function (DUF3489) - - - 0.0000000000001058 75.0
YYD2_k127_3660516_2 Tissue inhibitor of metalloproteinase - - - 0.00008383 51.0
YYD2_k127_366070_0 Glutamate synthase central domain K00265,K00284 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016020,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2065.0
YYD2_k127_366070_1 COG0583 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000004581 231.0
YYD2_k127_366070_2 glutamate synthase K00266 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.4.1.13,1.4.1.14 0.0000000000000000000000005224 105.0
YYD2_k127_3672432_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 1.289e-294 924.0
YYD2_k127_3672432_1 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.918e-206 654.0
YYD2_k127_3672432_10 Uncharacterized conserved protein (DUF2196) - - - 0.00000000000000000001438 93.0
YYD2_k127_3672432_11 Formate dehydrogenase N, transmembrane K00124 - - 0.00000002369 57.0
YYD2_k127_3672432_12 - - - - 0.00001196 50.0
YYD2_k127_3672432_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 468.0
YYD2_k127_3672432_3 Alcohol dehydrogenase GroES-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 441.0
YYD2_k127_3672432_4 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000905 404.0
YYD2_k127_3672432_5 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008851 401.0
YYD2_k127_3672432_6 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000006252 231.0
YYD2_k127_3672432_7 Protein of unknown function (DUF1810) - - - 0.000000000000000000000000000000000000000000000000002766 186.0
YYD2_k127_3672432_8 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000002628 163.0
YYD2_k127_3672432_9 RNA recognition motif - - - 0.0000000000000000000000000000005087 124.0
YYD2_k127_3676115_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1229.0
YYD2_k127_3676115_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1030.0
YYD2_k127_3676115_10 TIGRFAM geranylgeranyl reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000004331 246.0
YYD2_k127_3676115_11 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000001295 226.0
YYD2_k127_3676115_12 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000001493 214.0
YYD2_k127_3676115_13 glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.0000000000000000000000000000000000000000000000000000006681 196.0
YYD2_k127_3676115_14 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000001093 192.0
YYD2_k127_3676115_15 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000002838 146.0
YYD2_k127_3676115_16 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000000007491 140.0
YYD2_k127_3676115_17 Regulates arginine biosynthesis genes K03402 - - 0.000000000000000000000002368 107.0
YYD2_k127_3676115_18 CAAX protease self-immunity K07052 - - 0.000000000000003806 86.0
YYD2_k127_3676115_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.312e-309 969.0
YYD2_k127_3676115_3 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 462.0
YYD2_k127_3676115_4 ABC transporter C-terminal domain K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 426.0
YYD2_k127_3676115_5 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 323.0
YYD2_k127_3676115_6 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001648 259.0
YYD2_k127_3676115_7 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000391 260.0
YYD2_k127_3676115_8 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003342 250.0
YYD2_k127_3676115_9 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000002521 239.0
YYD2_k127_3692501_0 peroxiredoxin activity K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000002771 214.0
YYD2_k127_3692501_1 KR domain K03793 - 1.5.1.33 0.0000000000000000000000000000000000000000000000000000000006048 210.0
YYD2_k127_3692501_2 PFAM Type II secretion system protein E K02652 - - 0.000000000000000000000000000001594 121.0
YYD2_k127_3692501_3 bacterial (prokaryotic) histone like domain K03530 - - 0.000000000000000000000000004653 113.0
YYD2_k127_3692501_4 Pilus assembly protein K02662 - - 0.00000000000000004559 92.0
YYD2_k127_3692501_5 general secretion pathway protein - - - 0.00000000000426 79.0
YYD2_k127_3692501_6 PFAM Fimbrial assembly family protein K02663 - - 0.000000000009138 73.0
YYD2_k127_3692501_7 - K02664 - - 0.0007293 49.0
YYD2_k127_3709374_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 481.0
YYD2_k127_3709374_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 348.0
YYD2_k127_3709374_2 Histidine kinase K07683 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 326.0
YYD2_k127_3709374_3 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0018282,GO:0018283,GO:0019538,GO:0022607,GO:0030091,GO:0031163,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0071704,GO:0071840,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000009133 208.0
YYD2_k127_3719348_0 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 440.0
YYD2_k127_3719348_1 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004363 286.0
YYD2_k127_3719348_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000005264 235.0
YYD2_k127_3719348_3 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000004679 235.0
YYD2_k127_3719348_4 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000006151 72.0
YYD2_k127_3743005_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 454.0
YYD2_k127_3743005_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 321.0
YYD2_k127_3743005_2 dehydrogenase domain of multifunctional non-ribosomal peptide - - - 0.000000000000000000000000000000000000000000000000000849 199.0
YYD2_k127_3743005_3 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000002857 150.0
YYD2_k127_3743005_4 Glycosyltransferase 28 domain K03715 - 2.4.1.46 0.00000000000000000000000003782 121.0
YYD2_k127_3743005_5 L-sorbosone dehydrogenase - - - 0.0000001956 59.0
YYD2_k127_3767355_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007746 466.0
YYD2_k127_3767355_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 403.0
YYD2_k127_3767355_2 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000000000000001957 205.0
YYD2_k127_3767355_3 proteolysis K03665 - - 0.000000000000000000000000000000004969 136.0
YYD2_k127_3767355_4 von Willebrand factor, type A - - - 0.0000000000000005229 90.0
YYD2_k127_3771385_0 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007286 332.0
YYD2_k127_3771385_1 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 318.0
YYD2_k127_3771385_2 Bacterial periplasmic substrate-binding proteins - - - 0.00000000000000077 80.0
YYD2_k127_3771385_3 - - - - 0.0000771 54.0
YYD2_k127_3786329_0 Belongs to the ClpA ClpB family K03696 - - 0.0 1214.0
YYD2_k127_3786329_1 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 559.0
YYD2_k127_3786329_2 Protein of unknown function (DUF1009) K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003962 317.0
YYD2_k127_3786329_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008246 316.0
YYD2_k127_3786329_4 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002781 284.0
YYD2_k127_3786329_5 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007238 276.0
YYD2_k127_3786329_6 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000005869 243.0
YYD2_k127_3786329_7 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000004188 165.0
YYD2_k127_3786329_8 TonB C terminal - - - 0.0000000001328 72.0
YYD2_k127_3786329_9 outer membrane chaperone Skp (OmpH) K06142 - - 0.000000001407 68.0
YYD2_k127_3795541_0 Aldehyde dehydrogenase family K00128,K00146 - 1.2.1.3,1.2.1.39 1.346e-241 754.0
YYD2_k127_3795541_1 ABC transporter transmembrane region K06147,K18893 - - 8.744e-209 672.0
YYD2_k127_3795541_10 Redox protein regulator of disulfide bond formation K06889,K07397 - - 0.000000000000000000000000000000000000000000000004981 175.0
YYD2_k127_3795541_11 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000024 162.0
YYD2_k127_3795541_12 2-keto-4-pentenoate hydratase - - - 0.0000000000000000000000000000000000001361 153.0
YYD2_k127_3795541_13 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000846 117.0
YYD2_k127_3795541_2 pyrroloquinoline quinone binding - - - 3.415e-201 640.0
YYD2_k127_3795541_3 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 594.0
YYD2_k127_3795541_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 394.0
YYD2_k127_3795541_5 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 380.0
YYD2_k127_3795541_6 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009925 358.0
YYD2_k127_3795541_7 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 349.0
YYD2_k127_3795541_8 lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001186 271.0
YYD2_k127_3795541_9 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006539 244.0
YYD2_k127_3817641_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 2.179e-243 772.0
YYD2_k127_3817641_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005633 568.0
YYD2_k127_3817641_10 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000000000000000000046 187.0
YYD2_k127_3817641_11 ABC nitrate sulphonate bicarbonate family transporter, ATPase subunit K02049 - - 0.000000000000000000000000000000000004867 143.0
YYD2_k127_3817641_12 peroxiredoxin activity - - - 0.0000000000000000000000000000000001424 140.0
YYD2_k127_3817641_13 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000005725 92.0
YYD2_k127_3817641_2 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 464.0
YYD2_k127_3817641_3 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 405.0
YYD2_k127_3817641_4 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 330.0
YYD2_k127_3817641_5 Inner membrane component of T3SS, cytoplasmic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 331.0
YYD2_k127_3817641_6 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009093 294.0
YYD2_k127_3817641_7 C-terminal AAA-associated domain K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005311 291.0
YYD2_k127_3817641_8 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001082 246.0
YYD2_k127_3817641_9 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000005582 234.0
YYD2_k127_3824649_0 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 461.0
YYD2_k127_3824649_1 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 394.0
YYD2_k127_3824649_10 B3/4 domain K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000005466 49.0
YYD2_k127_3824649_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005139 377.0
YYD2_k127_3824649_3 glucose sorbosone K00117,K21430 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 334.0
YYD2_k127_3824649_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000002699 245.0
YYD2_k127_3824649_5 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000002369 245.0
YYD2_k127_3824649_6 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000001162 211.0
YYD2_k127_3824649_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000000006438 154.0
YYD2_k127_3824649_8 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000006059 105.0
YYD2_k127_3824649_9 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000008298 87.0
YYD2_k127_3849351_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1023.0
YYD2_k127_3849351_1 Sulfate transporter K03321 GO:0003333,GO:0003674,GO:0005215,GO:0005310,GO:0005326,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0008272,GO:0008509,GO:0008514,GO:0015075,GO:0015103,GO:0015116,GO:0015138,GO:0015141,GO:0015171,GO:0015172,GO:0015179,GO:0015183,GO:0015238,GO:0015318,GO:0015556,GO:0015698,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015800,GO:0015807,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070778,GO:0071422,GO:0071702,GO:0071705,GO:0071944,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902358,GO:1902475,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008875 583.0
YYD2_k127_3849351_2 CBS domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 385.0
YYD2_k127_3849351_3 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000001273 246.0
YYD2_k127_3849351_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000001787 182.0
YYD2_k127_3849351_5 efflux transmembrane transporter activity - - - 0.00000000000000000000000004755 122.0
YYD2_k127_3849351_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000001369 60.0
YYD2_k127_3849351_7 TonB dependent receptor - - - 0.0005502 47.0
YYD2_k127_3851405_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 394.0
YYD2_k127_3851405_1 Trehalose utilisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 322.0
YYD2_k127_3851405_2 PFAM Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005686 280.0
YYD2_k127_3851405_3 PFAM ATP-binding region, ATPase domain protein domain protein - - - 0.00000000000000000000000000000000000000006927 157.0
YYD2_k127_3851405_4 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000000000008263 149.0
YYD2_k127_3851405_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000002744 150.0
YYD2_k127_38568_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 6.326e-309 956.0
YYD2_k127_38568_1 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 509.0
YYD2_k127_38568_2 amine dehydrogenase activity K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 490.0
YYD2_k127_38568_3 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 458.0
YYD2_k127_38568_4 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009968 401.0
YYD2_k127_38568_5 protein import - - - 0.000000000000000000000005104 108.0
YYD2_k127_3859315_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003579 399.0
YYD2_k127_3890773_0 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000002876 188.0
YYD2_k127_3890773_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000005966 133.0
YYD2_k127_3894175_0 Domain of unknown function (DUF1998) K06877 - - 7.086e-280 887.0
YYD2_k127_3894175_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 349.0
YYD2_k127_3894175_2 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000000000000000000448 226.0
YYD2_k127_3894175_3 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000004057 148.0
YYD2_k127_3894175_4 Zincin-like metallopeptidase - - - 0.0000000000000000000000005804 115.0
YYD2_k127_3894175_5 Tetratricopeptide repeat - - - 0.00000000000000000000002234 105.0
YYD2_k127_3894175_6 - - - - 0.00000000000000000002201 93.0
YYD2_k127_3896301_0 exonuclease activity K16899 - 3.6.4.12 0.000000000004581 80.0
YYD2_k127_3900716_0 ABC transporter K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005114 467.0
YYD2_k127_3900716_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 397.0
YYD2_k127_3900716_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 387.0
YYD2_k127_3900716_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001237 284.0
YYD2_k127_3900716_4 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000004051 195.0
YYD2_k127_3900716_5 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000004946 190.0
YYD2_k127_3900716_6 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.000000000000000000000000000002245 126.0
YYD2_k127_3900716_7 Phosphocarrier protein HPr K08485,K11189 - - 0.00000000005058 66.0
YYD2_k127_3900716_8 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00004314 50.0
YYD2_k127_3906799_0 Mismatch repair ATPase (MutS family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005587 540.0
YYD2_k127_3906799_1 4 iron, 4 sulfur cluster binding K07139 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005704 331.0
YYD2_k127_3906799_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005483 259.0
YYD2_k127_3906799_3 PFAM Rhomboid family - - - 0.000000000000000000000000000000000000000000000000007762 190.0
YYD2_k127_3906799_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000001032 158.0
YYD2_k127_3906799_6 transposase IS116 IS110 IS902 family protein K07486 - - 0.00000000000000000000000000000002512 133.0
YYD2_k127_3906799_7 cell redox homeostasis - - - 0.0000000000000000000000000000003668 129.0
YYD2_k127_3906799_8 - - - - 0.000000000000000000000000008275 115.0
YYD2_k127_3906799_9 - - - - 0.0000000000000000002198 98.0
YYD2_k127_3907347_0 PQQ-like domain K00117 - 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 606.0
YYD2_k127_3907347_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009134 584.0
YYD2_k127_3907347_2 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 486.0
YYD2_k127_3907347_3 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009491 271.0
YYD2_k127_3907347_4 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000001104 241.0
YYD2_k127_3907347_5 Cytochrome P460 - - - 0.0000000000000000000000000000000000000000000000000000000003509 209.0
YYD2_k127_3907347_6 Antibiotic biosynthesis monooxygenase K11530 - 5.3.1.32 0.0000000000000009748 81.0
YYD2_k127_3911061_0 PQQ-like domain K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 485.0
YYD2_k127_3911061_1 domain protein K14194 - - 0.00000005182 66.0
YYD2_k127_3927985_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 409.0
YYD2_k127_3927985_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 355.0
YYD2_k127_3927985_10 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000001264 114.0
YYD2_k127_3927985_11 Ribosomal L29 protein K02904 - - 0.000000000000003558 78.0
YYD2_k127_3927985_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005008 272.0
YYD2_k127_3927985_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000001498 224.0
YYD2_k127_3927985_4 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000005906 226.0
YYD2_k127_3927985_5 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000003028 183.0
YYD2_k127_3927985_6 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000001638 146.0
YYD2_k127_3927985_7 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000000003731 145.0
YYD2_k127_3927985_8 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000000000000008978 136.0
YYD2_k127_3927985_9 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000004886 122.0
YYD2_k127_3966922_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 539.0
YYD2_k127_3966922_1 Protein of unknown function (DUF512) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 361.0
YYD2_k127_3966922_2 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 292.0
YYD2_k127_3966922_3 response regulator K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000001294 247.0
YYD2_k127_3966922_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000003748 197.0
YYD2_k127_3966922_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000002239 141.0
YYD2_k127_3966922_6 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000002927 143.0
YYD2_k127_3966922_7 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000000009507 126.0
YYD2_k127_3966922_8 DNA-templated transcription, initiation K03088 - - 0.00000008868 62.0
YYD2_k127_3980878_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 494.0
YYD2_k127_3980878_1 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000000000000000008248 162.0
YYD2_k127_3980878_2 Carboxypeptidase regulatory-like domain - - - 0.000000000005133 79.0
YYD2_k127_3980878_3 Cro/C1-type HTH DNA-binding domain - - - 0.00000006804 55.0
YYD2_k127_3980878_4 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000001445 51.0
YYD2_k127_3981375_0 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 614.0
YYD2_k127_3989344_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 6.729e-260 812.0
YYD2_k127_3989344_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 402.0
YYD2_k127_3989344_10 - - - - 0.00000000000000000000000001012 117.0
YYD2_k127_3989344_11 - - - - 0.0000000000000000000000002028 120.0
YYD2_k127_3989344_12 SMART phosphoesterase PHP domain protein - - - 0.00000000000000000004703 103.0
YYD2_k127_3989344_13 - - - - 0.00000000000000000008669 96.0
YYD2_k127_3989344_14 NlpC/P60 family K13695 - - 0.000000000000002023 83.0
YYD2_k127_3989344_15 Putative zinc-finger - - - 0.000000004261 65.0
YYD2_k127_3989344_16 FecR protein - - - 0.00000001777 62.0
YYD2_k127_3989344_17 Domain of Unknown Function (DUF350) K08989 - - 0.000007593 56.0
YYD2_k127_3989344_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 404.0
YYD2_k127_3989344_3 Radical SAM superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008113 322.0
YYD2_k127_3989344_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001031 288.0
YYD2_k127_3989344_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002167 279.0
YYD2_k127_3989344_6 tRNA pseudouridine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001933 270.0
YYD2_k127_3989344_7 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000003067 239.0
YYD2_k127_3989344_8 - - - - 0.00000000000000000000000000000000000000000001385 173.0
YYD2_k127_3989344_9 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000008474 140.0
YYD2_k127_3999394_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 5.806e-315 998.0
YYD2_k127_3999394_1 RQC K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901 429.0
YYD2_k127_3999394_2 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000939 412.0
YYD2_k127_3999394_3 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005468 302.0
YYD2_k127_3999394_4 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004215 271.0
YYD2_k127_3999394_5 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005737 265.0
YYD2_k127_3999394_6 Prephenate dehydratase K04518 - 4.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000004692 254.0
YYD2_k127_4013261_0 Formate/nitrite transporter K06212 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 333.0
YYD2_k127_4013261_1 KAP family P-loop domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004302 303.0
YYD2_k127_4013261_2 Activator of Hsp90 ATPase 1 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009229 241.0
YYD2_k127_4013261_3 translation release factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000002157 233.0
YYD2_k127_4013261_4 at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA) K04751,K04752 - - 0.000000000000000000000000000000000002208 143.0
YYD2_k127_4013261_5 Tetratricopeptide repeat - - - 0.00000003609 62.0
YYD2_k127_4013261_6 Thioredoxin reductase K00384 - 1.8.1.9 0.0003676 45.0
YYD2_k127_4018790_0 Spermine/spermidine synthase domain - - - 1.519e-264 837.0
YYD2_k127_4018790_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002898 258.0
YYD2_k127_4018790_10 oxidoreductase activity K12511 - - 0.00000000000000000006512 102.0
YYD2_k127_4018790_11 - - - - 0.0000000000000000004265 94.0
YYD2_k127_4018790_12 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000003241 85.0
YYD2_k127_4018790_13 - - - - 0.0000000001491 69.0
YYD2_k127_4018790_15 reverse transcriptase K00986 - 2.7.7.49 0.0007442 43.0
YYD2_k127_4018790_2 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002587 253.0
YYD2_k127_4018790_3 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000005713 230.0
YYD2_k127_4018790_4 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000002961 196.0
YYD2_k127_4018790_5 Heat shock protein DnaJ domain protein - - - 0.000000000000000000000000000000000000000000003464 178.0
YYD2_k127_4018790_6 YCII-related domain - - - 0.0000000000000000000000000000000000004065 143.0
YYD2_k127_4018790_7 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide - - - 0.000000000000000000000000000000001224 137.0
YYD2_k127_4018790_8 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000006683 127.0
YYD2_k127_4018790_9 - - - - 0.00000000000000000000000138 114.0
YYD2_k127_4024922_0 Multicopper oxidase - - - 1.245e-321 996.0
YYD2_k127_4024922_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008888 541.0
YYD2_k127_4024922_2 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 322.0
YYD2_k127_4024922_3 phenylacetate-CoA ligase activity - - - 0.0000000000000000000000000000000000000000000000000001208 191.0
YYD2_k127_4024922_4 - - - - 0.0000000000000000000000002242 119.0
YYD2_k127_4028740_0 Haem-degrading - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002915 281.0
YYD2_k127_4028740_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000007503 245.0
YYD2_k127_4028740_2 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.0000000000000000000000000000000000000000000000000000000000000004047 223.0
YYD2_k127_4028740_4 - - - - 0.000001371 51.0
YYD2_k127_403451_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 7.511e-208 676.0
YYD2_k127_403451_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 471.0
YYD2_k127_403451_2 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.00000000000000000000000000000002643 140.0
YYD2_k127_403451_3 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000002527 134.0
YYD2_k127_403451_4 - - - - 0.0000001901 54.0
YYD2_k127_4058948_0 PLD-like domain K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 599.0
YYD2_k127_4058948_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 439.0
YYD2_k127_4058948_10 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000001106 56.0
YYD2_k127_4058948_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000004496 211.0
YYD2_k127_4058948_4 Domain of unknown function (DUF4440) - - - 0.00000000000000000000000000000000001377 147.0
YYD2_k127_4058948_5 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01537 - 3.6.3.8 0.0000000000000000000000000000001734 128.0
YYD2_k127_4058948_6 bacterial OsmY and nodulation domain K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.0000000000000000000000000003268 121.0
YYD2_k127_4058948_9 short-chain dehydrogenase - - - 0.00000001093 59.0
YYD2_k127_4064273_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008216 483.0
YYD2_k127_4064273_1 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008068 314.0
YYD2_k127_4064273_2 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000003564 154.0
YYD2_k127_4064273_3 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000001513 139.0
YYD2_k127_4064273_4 diguanylate cyclase - - - 0.0000000000000000558 96.0
YYD2_k127_4064273_5 PFAM Cytochrome c - - - 0.000000002441 58.0
YYD2_k127_4064273_6 EcsC protein family - - - 0.0000003671 62.0
YYD2_k127_4070567_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000001909 224.0
YYD2_k127_4070567_1 Oxidoreductase molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000002546 187.0
YYD2_k127_4070567_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000002785 138.0
YYD2_k127_4070567_3 decarboxylase K01607 - 4.1.1.44 0.0000000000000000000000001182 116.0
YYD2_k127_4070567_4 MacB-like periplasmic core domain - - - 0.0004975 47.0
YYD2_k127_4072564_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 445.0
YYD2_k127_4072564_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005915 446.0
YYD2_k127_4072564_10 PFAM phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.000000000000000000000000000004183 126.0
YYD2_k127_4072564_11 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 - 0.00000000000007684 73.0
YYD2_k127_4072564_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 376.0
YYD2_k127_4072564_3 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 342.0
YYD2_k127_4072564_4 Belongs to the CinA family K03742,K03743 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009497 346.0
YYD2_k127_4072564_5 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 319.0
YYD2_k127_4072564_6 Domain of unknown function (DUF3488) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001002 291.0
YYD2_k127_4072564_7 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000005866 265.0
YYD2_k127_4072564_8 riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000024 185.0
YYD2_k127_4072564_9 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000941 136.0
YYD2_k127_4084946_0 PFAM aldehyde oxidase and xanthine dehydrogenase a b hammerhead - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 439.0
YYD2_k127_4084946_1 - - - - 0.0000000000000000000000000000689 128.0
YYD2_k127_410205_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 413.0
YYD2_k127_410205_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 297.0
YYD2_k127_410205_2 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002182 260.0
YYD2_k127_410205_3 dCMP deaminase activity K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000001218 210.0
YYD2_k127_410205_4 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000005112 177.0
YYD2_k127_4113290_0 Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate K07516 - 1.1.1.35 1.072e-206 666.0
YYD2_k127_4113290_1 PFAM AMP-dependent synthetase K12508 - 6.2.1.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 396.0
YYD2_k127_4113290_2 PFAM amidohydrolase 2 K07045 - - 0.00000000000000000000000000000000005256 138.0
YYD2_k127_4113290_3 Belongs to the aldehyde dehydrogenase family K00130,K00135,K09472,K22187 - 1.2.1.16,1.2.1.20,1.2.1.79,1.2.1.8,1.2.1.99 0.000000000000007105 74.0
YYD2_k127_4114824_0 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004037 320.0
YYD2_k127_4114824_1 DinB family - - - 0.0000000000000000000000000000000000000000000000002069 181.0
YYD2_k127_4114824_2 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000002057 134.0
YYD2_k127_4114824_3 Belongs to the ompA family - - - 0.000000000000000000000000001242 121.0
YYD2_k127_4132442_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.936e-300 940.0
YYD2_k127_4132442_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 522.0
YYD2_k127_4132442_10 Metallopeptidase family M24 K01262 - 3.4.11.9 0.000000000000000000000000000001057 125.0
YYD2_k127_4132442_11 Thioesterase superfamily K10806 - - 0.000000000000000000000000000001307 124.0
YYD2_k127_4132442_12 Major facilitator superfamily - - - 0.00000000000000000000000000003613 130.0
YYD2_k127_4132442_13 - - - - 0.00001083 51.0
YYD2_k127_4132442_2 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 510.0
YYD2_k127_4132442_3 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 441.0
YYD2_k127_4132442_4 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 371.0
YYD2_k127_4132442_5 Domain present in PSD-95, Dlg, and ZO-1/2. K08070,K08372 - 1.3.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000032 293.0
YYD2_k127_4132442_6 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000001693 239.0
YYD2_k127_4132442_7 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000007126 215.0
YYD2_k127_4132442_8 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000002079 218.0
YYD2_k127_4132442_9 - - - - 0.000000000000000000000000000000000003349 160.0
YYD2_k127_4147461_0 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 4.794e-247 792.0
YYD2_k127_4147461_1 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000001153 155.0
YYD2_k127_4147461_2 methyltransferase activity - - - 0.0000000000000000000000000000003534 126.0
YYD2_k127_4147461_3 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000008499 87.0
YYD2_k127_4147461_4 - - - - 0.000014 56.0
YYD2_k127_4161738_0 Belongs to the type II topoisomerase GyrA ParC subunit family K02621 - - 5.464e-194 627.0
YYD2_k127_4169632_0 ABC transporter K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 306.0
YYD2_k127_4169632_1 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001682 285.0
YYD2_k127_4169632_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000001364 250.0
YYD2_k127_4169632_3 Amidohydrolase family K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000003856 240.0
YYD2_k127_4169632_4 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.0000000000000000000000000000000000000000000000000000009172 198.0
YYD2_k127_4169632_5 - - - - 0.000003363 50.0
YYD2_k127_4170498_0 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 556.0
YYD2_k127_4170498_1 dehydrogenases and related proteins K10219 - 1.1.1.312 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 439.0
YYD2_k127_4170498_2 Binding-protein-dependent transport system inner membrane component K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 355.0
YYD2_k127_4170498_3 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 356.0
YYD2_k127_4170498_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 345.0
YYD2_k127_4170498_5 ATPases associated with a variety of cellular activities K02049,K15579 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 293.0
YYD2_k127_4170498_6 ABC transporter K02049,K15578,K15579 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003363 247.0
YYD2_k127_4170498_7 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000007437 237.0
YYD2_k127_417267_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1078.0
YYD2_k127_417267_1 PFAM Alcohol dehydrogenase GroES-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000813 589.0
YYD2_k127_417267_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000009982 162.0
YYD2_k127_417267_11 hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000007002 130.0
YYD2_k127_417267_12 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000000000172 119.0
YYD2_k127_417267_13 bacterial OsmY and nodulation domain - - - 0.00000000000000000000000005551 120.0
YYD2_k127_417267_14 AntiSigma factor - - - 0.000000000000000000009362 101.0
YYD2_k127_417267_15 - - - - 0.00000000000000000868 86.0
YYD2_k127_417267_16 Peptidoglycan-binding LysM - - - 0.0000000000003169 81.0
YYD2_k127_417267_18 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.000006032 54.0
YYD2_k127_417267_2 ATP dependent DNA ligase C terminal region K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 503.0
YYD2_k127_417267_3 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 426.0
YYD2_k127_417267_4 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 316.0
YYD2_k127_417267_5 Fungal family of unknown function (DUF1776) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 312.0
YYD2_k127_417267_6 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 312.0
YYD2_k127_417267_7 PFAM transferase hexapeptide repeat containing protein K00966 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002026 288.0
YYD2_k127_417267_8 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000002833 188.0
YYD2_k127_417267_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000005302 170.0
YYD2_k127_4186540_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 538.0
YYD2_k127_4186540_1 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000004811 141.0
YYD2_k127_4186540_3 MacB-like periplasmic core domain - - - 0.0000000000000000192 91.0
YYD2_k127_4186540_6 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000005354 55.0
YYD2_k127_4199449_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 484.0
YYD2_k127_4199449_1 Uncharacterized conserved protein (COG2071) - - - 0.0000000000000000000000000000000000000000000000000000000000000009592 225.0
YYD2_k127_4199449_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000004672 214.0
YYD2_k127_4254521_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 8.43e-199 637.0
YYD2_k127_4254521_1 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 440.0
YYD2_k127_4254521_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000005626 272.0
YYD2_k127_4254521_3 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008711 249.0
YYD2_k127_4254521_4 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000005707 240.0
YYD2_k127_4254521_5 universal stress protein - - - 0.00000000000000000000000000004311 128.0
YYD2_k127_4254521_6 - - - - 0.0000000000000000004125 98.0
YYD2_k127_4254521_7 hemerythrin HHE cation binding domain - - - 0.00000000000004046 79.0
YYD2_k127_4254521_8 Protein of unknown function (DUF3341) - - - 0.000000000000183 77.0
YYD2_k127_4254521_9 heat shock protein binding K03686 GO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141 - 0.00000000001219 72.0
YYD2_k127_4258992_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0 1231.0
YYD2_k127_4258992_1 electron transport chain K00347,K03614 - 1.6.5.8 2.763e-284 882.0
YYD2_k127_4278446_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 4.261e-231 730.0
YYD2_k127_4278446_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007494 499.0
YYD2_k127_4278446_10 metal cluster binding - - - 0.000000000001371 76.0
YYD2_k127_4278446_11 Protein of unknown function (DUF4026) - - - 0.00000000003454 75.0
YYD2_k127_4278446_12 Carboxypeptidase regulatory-like domain - - - 0.00008333 55.0
YYD2_k127_4278446_2 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 369.0
YYD2_k127_4278446_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 324.0
YYD2_k127_4278446_4 Thioredoxin K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000007908 205.0
YYD2_k127_4278446_5 Ferredoxin K02230 - 6.6.1.2 0.00000000000000000000000000000000000000000000001165 175.0
YYD2_k127_4278446_6 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000003601 157.0
YYD2_k127_4278446_7 Domain of unknown function (DUF1992) - - - 0.00000000000000000000000003116 111.0
YYD2_k127_4278446_8 lactoylglutathione lyase activity K00941,K01724,K01759,K07032,K08234 - 2.7.1.49,2.7.4.7,4.2.1.96,4.4.1.5 0.0000000000000000000008614 99.0
YYD2_k127_4278446_9 Carboxypeptidase regulatory-like domain - - - 0.00000000000000001909 96.0
YYD2_k127_4285177_0 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008104 512.0
YYD2_k127_4285177_1 nucleoside-diphosphate sugar epimerase K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 442.0
YYD2_k127_4285177_2 Surface antigen K07277,K09800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 404.0
YYD2_k127_4285177_3 Dehydrogenase E1 component K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 379.0
YYD2_k127_4285177_4 e3 binding domain K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 331.0
YYD2_k127_4285177_5 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000006049 241.0
YYD2_k127_4285177_6 Protein of unknown function, DUF393 - - - 0.00000000000000000000000000009257 120.0
YYD2_k127_4285569_0 Ribosomal protein S1 K02945 - - 1.521e-212 675.0
YYD2_k127_4285569_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 490.0
YYD2_k127_4285569_2 Protein of unknown function (DUF1385) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 298.0
YYD2_k127_4285569_3 PFAM peptidase S49 K04773 - - 0.00000000000000000000000000001075 123.0
YYD2_k127_4285569_4 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000005665 113.0
YYD2_k127_4285569_5 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000001756 53.0
YYD2_k127_4286598_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000009186 210.0
YYD2_k127_4286598_1 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000001968 199.0
YYD2_k127_4286598_2 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000000000000001046 139.0
YYD2_k127_4286598_3 Glutathione peroxidase - - - 0.000000000007103 75.0
YYD2_k127_4352684_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 3.06e-227 719.0
YYD2_k127_4352684_1 PFAM Cobyrinic acid ac-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 305.0
YYD2_k127_4352684_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001245 263.0
YYD2_k127_4352684_3 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002362 253.0
YYD2_k127_4352684_4 Polymer-forming cytoskeletal - - - 0.0000000000000000005717 91.0
YYD2_k127_4352684_5 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.000000001518 66.0
YYD2_k127_4355955_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 379.0
YYD2_k127_4355955_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000001239 224.0
YYD2_k127_4355955_2 RNA polymerase sigma factor K03088 - - 0.00000000000000000000000000000000000000000000005554 175.0
YYD2_k127_4355955_3 - - - - 0.000000000000000000000000000001316 129.0
YYD2_k127_4355955_4 Putative adhesin - - - 0.00000000000000000000000000009807 131.0
YYD2_k127_4355955_5 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000005757 125.0
YYD2_k127_4355955_6 - - - - 0.000000000000006783 81.0
YYD2_k127_4355955_7 Hsp20/alpha crystallin family K13993 - - 0.000000000008457 69.0
YYD2_k127_4355955_8 Putative zinc-finger - - - 0.000007319 55.0
YYD2_k127_4395374_0 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 315.0
YYD2_k127_4395374_1 Dehydrogenase K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009492 279.0
YYD2_k127_4395374_2 Phage integrase, N-terminal SAM-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001371 231.0
YYD2_k127_4402969_0 Copper resistance protein K07233 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 308.0
YYD2_k127_4402969_1 - - - - 0.0000000000000002955 93.0
YYD2_k127_4402969_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000009321 76.0
YYD2_k127_4411421_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 620.0
YYD2_k127_4411421_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 414.0
YYD2_k127_4411421_2 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000001128 235.0
YYD2_k127_4411421_3 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000004964 223.0
YYD2_k127_4411421_4 peroxiredoxin activity - - - 0.000000000000000000000000000000000000000000000000304 184.0
YYD2_k127_4411421_6 alpha/beta hydrolase fold - - - 0.0000000000000000000000002371 109.0
YYD2_k127_4411421_7 Dioxygenase K00449 - 1.13.11.3 0.000000000000000008197 85.0
YYD2_k127_4413575_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009405,GO:0009408,GO:0009628,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018995,GO:0019058,GO:0019068,GO:0020003,GO:0022610,GO:0023051,GO:0023056,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033643,GO:0033644,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0035639,GO:0035821,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044174,GO:0044175,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044279,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044650,GO:0044764,GO:0046812,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0051817,GO:0052047,GO:0052212,GO:0061077,GO:0065007,GO:0065010,GO:0097159,GO:0097367,GO:0101031,GO:1901222,GO:1901224,GO:1901265,GO:1901363,GO:1902531,GO:1902533,GO:1990220,GO:2000535 - 8.894e-252 786.0
YYD2_k127_4413575_1 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004994 303.0
YYD2_k127_4413575_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000006391 261.0
YYD2_k127_4413575_3 IstB-like ATP binding protein K02315,K04076 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000005505 225.0
YYD2_k127_4413575_4 - - - - 0.0000000000000000000000000000000000000000000000263 181.0
YYD2_k127_4413575_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000004677 155.0
YYD2_k127_4413575_6 4Fe-4S binding domain - - - 0.000000000000000000000000000003283 132.0
YYD2_k127_4413575_7 FMN_bind K19339 - - 0.000000000000000002678 91.0
YYD2_k127_4413575_8 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000006527 74.0
YYD2_k127_4469365_0 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 473.0
YYD2_k127_4469365_1 cytochrome p450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000626 299.0
YYD2_k127_4469365_2 PFAM Exonuclease, RNase T and DNA polymerase III K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000005602 165.0
YYD2_k127_4469365_3 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.00000000000000000000000000000000000000003253 172.0
YYD2_k127_4487324_0 transport - - - 0.0000000000000008214 91.0
YYD2_k127_4487324_1 copper-translocating P-type ATPase K17686 - 3.6.3.54 0.0000001681 63.0
YYD2_k127_4493075_0 PFAM YCII-related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007185 269.0
YYD2_k127_4493075_1 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000001683 174.0
YYD2_k127_4493075_2 YCII-related domain - - - 0.000000000000000000000000001477 119.0
YYD2_k127_4493075_4 Membrane - - - 0.0001222 46.0
YYD2_k127_4525674_0 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 375.0
YYD2_k127_4525674_1 Dicarboxylate carrier MatC domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 338.0
YYD2_k127_4525674_2 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001557 243.0
YYD2_k127_4525674_3 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 - 1.3.3.11 0.000000000000000000000000000000000000000000000000000000000000000001112 236.0
YYD2_k127_4525674_4 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000000000000002136 160.0
YYD2_k127_4525674_5 - - - - 0.0000000000000000000000000001311 124.0
YYD2_k127_4529367_0 Belongs to the glutaminase family K01425 GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 3.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 466.0
YYD2_k127_4529367_1 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 443.0
YYD2_k127_4529367_2 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000971 344.0
YYD2_k127_4529367_3 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000004226 234.0
YYD2_k127_4529367_4 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000004792 215.0
YYD2_k127_4529367_5 von Willebrand factor, type A - - - 0.00000003015 66.0
YYD2_k127_4549557_0 Male sterility protein K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000448 427.0
YYD2_k127_4549557_1 Domain of unknown function (DUF1972) K12996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 417.0
YYD2_k127_4549557_10 Glycosyl transferase 4-like domain K03525 - 2.7.1.33 0.0000000000000000000000000007293 126.0
YYD2_k127_4549557_11 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000006782 114.0
YYD2_k127_4549557_12 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000003116 111.0
YYD2_k127_4549557_13 - - - - 0.00000000000000000000000946 109.0
YYD2_k127_4549557_14 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000000001171 97.0
YYD2_k127_4549557_15 methyltransferase - - - 0.000000000000000000004639 103.0
YYD2_k127_4549557_16 - - - - 0.00000000000003009 77.0
YYD2_k127_4549557_17 - - - - 0.00000000000003502 72.0
YYD2_k127_4549557_18 chlorophyll binding - - - 0.0000000000002168 79.0
YYD2_k127_4549557_2 peptidase dimerisation domain protein K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 351.0
YYD2_k127_4549557_3 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 345.0
YYD2_k127_4549557_4 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 299.0
YYD2_k127_4549557_5 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002175 268.0
YYD2_k127_4549557_6 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002229 247.0
YYD2_k127_4549557_7 - - - - 0.00000000000000000000000000000000000000000000000001654 193.0
YYD2_k127_4549557_8 Phosphomethylpyrimidine kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000001069 170.0
YYD2_k127_4549557_9 Glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000002623 136.0
YYD2_k127_4552027_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 556.0
YYD2_k127_4552027_1 PFAM Cytochrome b b6 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357 415.0
YYD2_k127_4552027_10 HEAT repeats - - - 0.000008677 57.0
YYD2_k127_4552027_2 Cytochrome b(C-terminal)/b6/petD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 414.0
YYD2_k127_4552027_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 350.0
YYD2_k127_4552027_4 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007533 290.0
YYD2_k127_4552027_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000006059 264.0
YYD2_k127_4552027_6 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001182 258.0
YYD2_k127_4552027_7 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.000000000000000000000000000000000000000000000000000000000009369 214.0
YYD2_k127_4552027_8 Cytochrome oxidase assembly protein K02259 - - 0.0000000000000000000000000000000000000000000000000000000003538 214.0
YYD2_k127_4552027_9 Polysaccharide lyase family 4, domain II - - - 0.000000000000000000000000000000000000000000001458 174.0
YYD2_k127_4556372_0 Aldehyde dehydrogenase family - - - 4.922e-206 650.0
YYD2_k127_4556372_1 COG1012 NAD-dependent aldehyde - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 550.0
YYD2_k127_4556372_2 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 367.0
YYD2_k127_4556372_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001262 236.0
YYD2_k127_4556372_4 permease - - - 0.0000000000000000000000000000000000000000000000001062 192.0
YYD2_k127_4556372_5 PQQ-like domain - - - 0.00001043 49.0
YYD2_k127_4564775_0 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009163 507.0
YYD2_k127_4564775_1 protein kinase related protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008221 474.0
YYD2_k127_4564775_2 Iron-containing alcohol dehydrogenase K00001,K13954 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 402.0
YYD2_k127_4564775_3 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 385.0
YYD2_k127_4564775_4 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 362.0
YYD2_k127_4564775_5 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000001145 111.0
YYD2_k127_4564775_6 - - - - 0.0002915 49.0
YYD2_k127_4567181_0 cobalamin-transporting ATPase activity K02014,K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006524 260.0
YYD2_k127_4567181_2 - - - - 0.00002984 52.0
YYD2_k127_4567914_0 SMART Elongator protein 3 MiaB NifB - - - 5.258e-233 731.0
YYD2_k127_4567914_1 siderophore transport K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002796 299.0
YYD2_k127_4569951_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002656 291.0
YYD2_k127_4569951_1 Transcriptional regulator, Crp Fnr family - - - 0.00000000000000000000000000000000000000000000000000000000000003604 221.0
YYD2_k127_4569951_2 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000001354 170.0
YYD2_k127_4573215_0 PBS lyase HEAT-like repeat - - - 4.694e-195 632.0
YYD2_k127_4573215_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 590.0
YYD2_k127_4573215_10 phosphorelay signal transduction system - - - 0.000000000000000000000000000000003465 132.0
YYD2_k127_4573215_11 PFAM KWG Leptospira - - - 0.00000000000000005802 83.0
YYD2_k127_4573215_12 protein ubiquitination K21440 - - 0.0000000000000001344 89.0
YYD2_k127_4573215_13 WG containing repeat - - - 0.000000002297 63.0
YYD2_k127_4573215_14 TRAP transporter T-component - - - 0.000000003471 62.0
YYD2_k127_4573215_2 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003363 532.0
YYD2_k127_4573215_3 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 474.0
YYD2_k127_4573215_4 PQQ-like domain K17760 - 1.1.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 472.0
YYD2_k127_4573215_5 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 437.0
YYD2_k127_4573215_6 Methyltransferase, chemotaxis proteins K00575,K13486 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537 302.0
YYD2_k127_4573215_7 CheC inhibitor of MCP methylation K03410 - - 0.000000000000000000000000000000000000000000000000000000000000005583 223.0
YYD2_k127_4573215_8 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000000000000006059 180.0
YYD2_k127_4573215_9 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000000006413 154.0
YYD2_k127_4608376_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0 1349.0
YYD2_k127_4608376_1 MacB-like periplasmic core domain - - - 4.43e-284 895.0
YYD2_k127_4608376_10 Methylated dna-protein cysteine methyltransferase K07443 - - 0.000000000000000000000005223 105.0
YYD2_k127_4608376_11 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.0000000000002313 81.0
YYD2_k127_4608376_2 response regulator - - - 1.34e-198 629.0
YYD2_k127_4608376_3 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 374.0
YYD2_k127_4608376_4 TIGRFAM efflux transporter, RND family, MFP subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 377.0
YYD2_k127_4608376_5 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 368.0
YYD2_k127_4608376_6 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 348.0
YYD2_k127_4608376_7 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006778 308.0
YYD2_k127_4608376_8 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000001148 168.0
YYD2_k127_4608376_9 RNA-DNA hybrid ribonuclease activity - - - 0.0000000000000000000000000001673 121.0
YYD2_k127_4611824_0 Spermine/spermidine synthase domain - - - 1.933e-246 783.0
YYD2_k127_4611824_1 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 373.0
YYD2_k127_4611824_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004925 277.0
YYD2_k127_4611824_3 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000001417 236.0
YYD2_k127_4611824_4 - - - - 0.00000000000000000000000000000000000001764 150.0
YYD2_k127_4611824_5 - - - - 0.000000000000000000000000001925 126.0
YYD2_k127_4640322_0 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 556.0
YYD2_k127_4640322_1 Sensor histidine kinase, HAMP domain-containing K07644 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 346.0
YYD2_k127_4640322_2 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 319.0
YYD2_k127_4640322_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000001526 226.0
YYD2_k127_4640322_4 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000001184 190.0
YYD2_k127_4640322_5 Subtilase family K14645 - - 0.00000000000000000000000000000000000000000009152 174.0
YYD2_k127_4641664_0 Xylose isomerase domain protein TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 528.0
YYD2_k127_4641664_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 511.0
YYD2_k127_4641664_2 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008889 289.0
YYD2_k127_4641664_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000001439 238.0
YYD2_k127_4641664_4 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000002044 151.0
YYD2_k127_4641664_5 NAD(P)H dehydrogenase (quinone) activity K03809 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 1.6.5.2 0.0000009893 57.0
YYD2_k127_4658929_0 Carboxypeptidase regulatory-like domain - - - 1.282e-223 710.0
YYD2_k127_4658929_1 TonB dependent receptor K02014 - - 0.00000000000000000000146 104.0
YYD2_k127_4663382_0 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 462.0
YYD2_k127_4663382_1 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 370.0
YYD2_k127_4663382_10 - - - - 0.000000000000000000000000001431 116.0
YYD2_k127_4663382_11 Putative esterase K07214 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0008150,GO:0008152,GO:0008849,GO:0009056,GO:0009237,GO:0009238,GO:0009712,GO:0009987,GO:0016787,GO:0016788,GO:0018958,GO:0019336,GO:0019439,GO:0019614,GO:0019748,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0046214,GO:0046215,GO:0046483,GO:0046700,GO:0051186,GO:0051187,GO:0071704,GO:0090487,GO:1901360,GO:1901361,GO:1901575,GO:1901615,GO:1901616 - 0.00000000000000000001416 106.0
YYD2_k127_4663382_12 protein transport - - - 0.00000000000004463 76.0
YYD2_k127_4663382_13 Pfam:DUF2029 - - - 0.0000000000000817 83.0
YYD2_k127_4663382_14 nucleic acid-binding protein - - - 0.000001723 55.0
YYD2_k127_4663382_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008258 349.0
YYD2_k127_4663382_3 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 304.0
YYD2_k127_4663382_4 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008288 244.0
YYD2_k127_4663382_5 COG0122 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000005505 230.0
YYD2_k127_4663382_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000002312 224.0
YYD2_k127_4663382_7 Protein of unknown function (DUF1572) - - - 0.0000000000000000000000000000000000000000000005356 171.0
YYD2_k127_4663382_8 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000003033 169.0
YYD2_k127_4663382_9 SnoaL-like domain - - - 0.000000000000000000000000000000000000000373 152.0
YYD2_k127_4688417_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000004149 288.0
YYD2_k127_4688417_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000613 240.0
YYD2_k127_4688417_2 - - - - 0.00000000000000000000000000000001718 132.0
YYD2_k127_4688417_3 Prolyl oligopeptidase family K06889 - - 0.000000000000000000001618 103.0
YYD2_k127_4688417_4 - - - - 0.0000000007293 61.0
YYD2_k127_4699756_0 DNA polymerase Ligase (LigD) - - - 2.975e-207 655.0
YYD2_k127_4699756_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000000000000000000001931 213.0
YYD2_k127_4703415_0 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000002689 243.0
YYD2_k127_4703415_1 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000007496 202.0
YYD2_k127_4703415_2 Protein of unknown function (DUF1587) - - - 0.0000000000000000000004595 102.0
YYD2_k127_4703415_3 DNA topological change K03168 - 5.99.1.2 0.000000000000000002258 96.0
YYD2_k127_4708611_0 Proteasomal ATPase OB/ID domain K13527 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 612.0
YYD2_k127_4708611_1 Pup-ligase protein K20814 - 3.5.1.119 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 375.0
YYD2_k127_4732299_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2117.0
YYD2_k127_4732299_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0 1245.0
YYD2_k127_4732299_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000001652 124.0
YYD2_k127_4760210_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 351.0
YYD2_k127_4760210_1 Peptidase M56, BlaR1 - - - 0.0000000000000000000000000000000000000000000000001007 194.0
YYD2_k127_477254_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1642.0
YYD2_k127_477254_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004849 503.0
YYD2_k127_477254_2 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 424.0
YYD2_k127_477254_3 Histidine-specific methyltransferase, SAM-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 301.0
YYD2_k127_477254_4 Transglycosylase associated protein - - - 0.00000000000000000000000000003528 119.0
YYD2_k127_4801132_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 1.465e-264 822.0
YYD2_k127_4801132_1 membrane - - - 0.0000000000000000000000000000000001018 137.0
YYD2_k127_4801132_2 response regulator - - - 0.0000000000000000000000004304 116.0
YYD2_k127_4827838_0 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 325.0
YYD2_k127_4827838_1 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000008972 173.0
YYD2_k127_4827838_2 domain protein K14194 - - 0.0000000000000002962 82.0
YYD2_k127_4827838_3 Sigma-70 region 2 K03088 - - 0.00000007497 59.0
YYD2_k127_4847058_0 AcrB/AcrD/AcrF family - - - 1.514e-219 720.0
YYD2_k127_4847058_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000001157 236.0
YYD2_k127_4847058_2 Protein of unknown function (DUF454) K09790 - - 0.0000000000000000000000001242 111.0
YYD2_k127_4847058_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000001467 68.0
YYD2_k127_4847058_4 YtkA-like - - - 0.0003717 49.0
YYD2_k127_4848890_0 Domain of unknown function (DUF1730) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 348.0
YYD2_k127_4848890_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000009853 236.0
YYD2_k127_4848890_2 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000009587 157.0
YYD2_k127_4848890_3 protein kinase activity K13582,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000004286 163.0
YYD2_k127_4848890_4 DNA integration - - - 0.0000000001675 64.0
YYD2_k127_4857761_0 G8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 412.0
YYD2_k127_4857761_1 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000008147 172.0
YYD2_k127_4857761_10 - - - - 0.00000000003254 69.0
YYD2_k127_4857761_11 - - - - 0.000000001499 64.0
YYD2_k127_4857761_12 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.00004567 47.0
YYD2_k127_4857761_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000008817 177.0
YYD2_k127_4857761_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000002598 160.0
YYD2_k127_4857761_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000002251 125.0
YYD2_k127_4857761_5 - - - - 0.00000000000000000000000007187 112.0
YYD2_k127_4857761_6 Amidohydrolase family - - - 0.000000000000000000003819 109.0
YYD2_k127_4857761_7 - - - - 0.00000000000000000001184 101.0
YYD2_k127_4857761_9 Integrase - - - 0.0000000000001182 74.0
YYD2_k127_4862836_0 COG0515 Serine threonine protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 357.0
YYD2_k127_4862836_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000007103 244.0
YYD2_k127_4862836_2 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000001163 203.0
YYD2_k127_4862836_3 addiction module antidote protein HigA K21498 - - 0.000000000000000000001377 98.0
YYD2_k127_4862836_4 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000001902 87.0
YYD2_k127_4862836_5 Plasmid maintenance system killer protein K07334 - - 0.0000000006458 60.0
YYD2_k127_4862836_6 DinB superfamily - - - 0.000002823 52.0
YYD2_k127_4888777_0 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001386 235.0
YYD2_k127_4888777_1 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000000000000000000000000000000000000000000000000216 212.0
YYD2_k127_4905516_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1019.0
YYD2_k127_4905516_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000000005888 232.0
YYD2_k127_4905516_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000874 226.0
YYD2_k127_4905516_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000001534 70.0
YYD2_k127_4929529_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 568.0
YYD2_k127_4929529_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007048 272.0
YYD2_k127_4929529_2 EamA-like transporter family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000006167 233.0
YYD2_k127_4929529_3 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000000000000000009101 216.0
YYD2_k127_49408_0 PFAM CBS domain containing protein K01697,K01738 - 2.5.1.47,4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 483.0
YYD2_k127_49408_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 453.0
YYD2_k127_49408_2 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 389.0
YYD2_k127_49408_3 Pyridoxal-phosphate dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 314.0
YYD2_k127_49408_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002613 272.0
YYD2_k127_49408_5 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001766 250.0
YYD2_k127_49408_6 Methyltransferase domain K22309 - 2.1.1.344 0.00000000000000000000000000000000000000000000000000000005744 207.0
YYD2_k127_49408_7 WYL domain K13572 - - 0.00000000000000000000000000000000000000000000000000001161 202.0
YYD2_k127_49408_8 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000001639 132.0
YYD2_k127_49408_9 von Willebrand factor, type A - - - 0.00000000000000000000000002355 119.0
YYD2_k127_4945295_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.174e-225 727.0
YYD2_k127_4945295_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 520.0
YYD2_k127_4945295_10 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000000002136 184.0
YYD2_k127_4945295_11 PFAM peptidase S8 and S53 subtilisin kexin sedolisin K08651 - 3.4.21.66 0.00000000000000000000000000000000000000000000004881 181.0
YYD2_k127_4945295_12 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000002689 161.0
YYD2_k127_4945295_13 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000001939 148.0
YYD2_k127_4945295_14 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000001416 139.0
YYD2_k127_4945295_15 Belongs to the asparaginase 1 family K01424 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.5.1.1 0.0000000000000000000000000002659 126.0
YYD2_k127_4945295_16 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000001724 94.0
YYD2_k127_4945295_17 Protein of unknown function (DUF503) K09764 - - 0.000000000000000007538 86.0
YYD2_k127_4945295_18 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000002313 67.0
YYD2_k127_4945295_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 473.0
YYD2_k127_4945295_3 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 464.0
YYD2_k127_4945295_4 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 298.0
YYD2_k127_4945295_5 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003728 276.0
YYD2_k127_4945295_6 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000001533 269.0
YYD2_k127_4945295_7 PFAM glycosyl transferase family 9 K02841 - - 0.00000000000000000000000000000000000000000000000000004215 200.0
YYD2_k127_4945295_8 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000673 198.0
YYD2_k127_4945295_9 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000003154 185.0
YYD2_k127_4964994_0 phosphorelay signal transduction system K07712,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 471.0
YYD2_k127_4964994_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 442.0
YYD2_k127_4964994_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 334.0
YYD2_k127_4964994_3 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001386 289.0
YYD2_k127_4964994_4 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.000000000000000000000000000000000000000000000000000000000000000002287 233.0
YYD2_k127_4964994_5 Response regulator, receiver K11443 - - 0.0000000000000000000000000002057 120.0
YYD2_k127_4964994_6 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.0000000000000000001113 90.0
YYD2_k127_4964994_7 PFAM TPR repeat-containing protein - - - 0.00000000000000003102 95.0
YYD2_k127_4964994_8 - - - - 0.000000000000001018 87.0
YYD2_k127_4964994_9 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00002338 55.0
YYD2_k127_4966188_0 metallocarboxypeptidase activity K14054 - - 0.0 1016.0
YYD2_k127_4966188_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 586.0
YYD2_k127_4966188_10 DinB family - - - 0.0000000000000000000000000000000000002976 154.0
YYD2_k127_4966188_11 Protein of unknown function (DUF420) K08976 - - 0.000000000000000000000000000000005274 141.0
YYD2_k127_4966188_12 Sh3 type 3 domain protein - - - 0.000000000000003907 88.0
YYD2_k127_4966188_13 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000522 61.0
YYD2_k127_4966188_14 Outer membrane protein (OmpH-like) K06142 - - 0.000000005568 66.0
YYD2_k127_4966188_15 Protein of unknown function (DUF721) - - - 0.00004129 50.0
YYD2_k127_4966188_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004552 582.0
YYD2_k127_4966188_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 515.0
YYD2_k127_4966188_4 Domain of unknown function (DUF3943) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 475.0
YYD2_k127_4966188_5 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006612 409.0
YYD2_k127_4966188_6 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409,K03070 GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 345.0
YYD2_k127_4966188_7 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000009682 234.0
YYD2_k127_4966188_8 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000003499 164.0
YYD2_k127_4966188_9 SCO1/SenC K07152 - - 0.000000000000000000000000000000000000002742 151.0
YYD2_k127_4977644_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 529.0
YYD2_k127_4977644_1 4Fe-4S dicluster domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 375.0
YYD2_k127_4977644_2 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
YYD2_k127_4977644_3 PFAM Type II secretion system protein E K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 291.0
YYD2_k127_4977644_4 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000001478 189.0
YYD2_k127_4977644_5 heat shock protein binding K03686 - - 0.00000000000005355 79.0
YYD2_k127_4977644_6 Tetratricopeptide repeat - - - 0.000000000000166 79.0
YYD2_k127_4980415_0 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005827 304.0
YYD2_k127_4980415_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000005269 194.0
YYD2_k127_4980415_2 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000000000000000000000005011 141.0
YYD2_k127_4992806_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007598 565.0
YYD2_k127_4992806_1 aromatic amino acid beta-eliminating lyase threonine aldolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 365.0
YYD2_k127_4992806_2 Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009508 334.0
YYD2_k127_4992806_3 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000001569 91.0
YYD2_k127_4992806_4 Phage tail tube, TTP, lambda-like - - - 0.0000001678 65.0
YYD2_k127_4992806_5 Pfam:N_methyl_2 - - - 0.00000032 61.0
YYD2_k127_4992806_6 spheroidene biosynthetic process - - - 0.0002892 54.0
YYD2_k127_4992806_7 - - - - 0.0005045 47.0
YYD2_k127_4998749_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 437.0
YYD2_k127_4998749_1 thiamine kinase activity - - - 0.00000000000000000000000000000000001037 147.0
YYD2_k127_4998749_3 - - - - 0.000000000000001211 82.0
YYD2_k127_5016159_0 - - - - 0.0000000000000000000000000005199 123.0
YYD2_k127_5016159_1 Protein conserved in bacteria - - - 0.000000000000000000000000009401 121.0
YYD2_k127_5023510_0 Trehalose utilisation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004096 253.0
YYD2_k127_5023510_1 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000004153 180.0
YYD2_k127_5023510_2 Chromate transporter K07240 - - 0.00000000000000000000000000000000001141 138.0
YYD2_k127_5023510_3 - - - - 0.000000000001683 76.0
YYD2_k127_5076322_0 Transposase, Mutator family - - - 0.0000000000000000000000000000000000000000000000000001408 190.0
YYD2_k127_5076322_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000001712 131.0
YYD2_k127_5076322_2 Cytochrome c - - - 0.000003938 55.0
YYD2_k127_5089335_0 Dehydrogenase E1 component K00615 - 2.2.1.1 3.977e-293 920.0
YYD2_k127_5089335_1 Cysteine-rich domain K00113 - 1.1.5.3 3.183e-213 669.0
YYD2_k127_5089335_2 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 403.0
YYD2_k127_5089335_3 LysR substrate binding domain K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 297.0
YYD2_k127_5089335_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 288.0
YYD2_k127_5089335_5 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001631 253.0
YYD2_k127_5089335_6 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000008287 232.0
YYD2_k127_5089335_7 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000002932 221.0
YYD2_k127_5089335_8 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000105 188.0
YYD2_k127_5089335_9 energy transducer activity K02487,K03832,K06596 - - 0.00000000001873 69.0
YYD2_k127_5101057_0 Peptidase M16C associated K06972 - - 2.783e-302 964.0
YYD2_k127_5120905_0 Phosphate transport system permease K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008382 361.0
YYD2_k127_5120905_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000622 309.0
YYD2_k127_5120905_2 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009604 274.0
YYD2_k127_5120905_3 PFAM response regulator receiver K02483,K07658,K07668 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009512 249.0
YYD2_k127_5120905_4 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000002517 196.0
YYD2_k127_5120905_5 - - - - 0.000372 51.0
YYD2_k127_5121978_0 amino acid - - - 0.0 1057.0
YYD2_k127_5121978_1 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 6.046e-219 701.0
YYD2_k127_5121978_2 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 428.0
YYD2_k127_5121978_3 Short-chain dehydrogenase reductase SDR K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000913 285.0
YYD2_k127_5121978_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000001489 176.0
YYD2_k127_5121978_5 protein import - - - 0.000009884 51.0
YYD2_k127_5123828_0 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 473.0
YYD2_k127_5123828_1 - - - - 0.0000000000000000000000000000000000000000000000000000004836 197.0
YYD2_k127_5123828_2 Helicase ATP-dependent domain protein K03579 - 3.6.4.13 0.000000000000000000000000000000000004589 139.0
YYD2_k127_5123828_3 - - - - 0.000000000000000000007518 97.0
YYD2_k127_5131950_0 amino acid - - - 3.082e-238 752.0
YYD2_k127_5131950_1 Bacterial protein of unknown function (DUF853) - - - 1.233e-211 670.0
YYD2_k127_5131950_10 Protein of unknown function, DUF481 K07283 - - 0.00000000001599 74.0
YYD2_k127_5131950_2 Nicotinate phosphoribosyltransferase (NAPRTase) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 527.0
YYD2_k127_5131950_3 isochorismatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 437.0
YYD2_k127_5131950_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000607 280.0
YYD2_k127_5131950_5 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000001129 210.0
YYD2_k127_5131950_6 Large-conductance mechanosensitive channel, MscL K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000000000000000000004241 193.0
YYD2_k127_5131950_7 - - - - 0.0000000000000000000000000000000000000009216 153.0
YYD2_k127_5131950_8 - - - - 0.000000000000000000000000000000003086 142.0
YYD2_k127_5131950_9 Polymer-forming cytoskeletal - - - 0.0000000000000007273 83.0
YYD2_k127_519190_0 BFD-like [2Fe-2S] binding domain K00362 - 1.7.1.15 0.0 1321.0
YYD2_k127_519190_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 0.0 1173.0
YYD2_k127_519190_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004235 587.0
YYD2_k127_519190_3 nitrite transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007418 378.0
YYD2_k127_519190_4 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 302.0
YYD2_k127_519190_5 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000000000000000000002509 181.0
YYD2_k127_519190_6 PFAM Rieske 2Fe-2S domain protein - - - 0.000000000000000000000000000000000000001017 154.0
YYD2_k127_519190_7 FtsX-like permease family - - - 0.00000000000000000000000000000000000000425 157.0
YYD2_k127_519190_8 Rieske-like [2Fe-2S] domain - - - 0.0000000000000000000000000000000000009464 147.0
YYD2_k127_519190_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000004522 79.0
YYD2_k127_5195482_0 Carboxypeptidase regulatory-like domain - - - 1.06e-294 932.0
YYD2_k127_5195482_1 oxidoreductase activity - - - 1.47e-206 664.0
YYD2_k127_5195482_2 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000009651 202.0
YYD2_k127_5195482_4 - - - - 0.000000000000000000000003655 112.0
YYD2_k127_5195482_5 - - - - 0.0000000000000000000000219 106.0
YYD2_k127_5204460_0 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006286 587.0
YYD2_k127_5204460_1 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 485.0
YYD2_k127_5204460_3 ferredoxin-NADP+ reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001969 269.0
YYD2_k127_5204460_4 4fe-4S ferredoxin, iron-sulfur binding domain protein K00384,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.0000000000000000000000000000000000000000000000000009953 195.0
YYD2_k127_5204460_6 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000004152 58.0
YYD2_k127_5205383_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 551.0
YYD2_k127_5205383_1 2OG-Fe(II) oxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007422 349.0
YYD2_k127_5205383_10 Tricorn protease homolog - - - 0.00000000000000000000007378 115.0
YYD2_k127_5205383_11 serine threonine protein kinase K08884 - 2.7.11.1 0.000000003794 65.0
YYD2_k127_5205383_12 SnoaL-like domain - - - 0.00000002879 63.0
YYD2_k127_5205383_13 NfeD-like C-terminal, partner-binding K07403 - - 0.0000001147 57.0
YYD2_k127_5205383_2 glutathionylspermidine amidase activity K01460 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008884,GO:0008885,GO:0016787,GO:0016810,GO:0016811,GO:0016874,GO:0016879,GO:0016880,GO:0044424,GO:0044444,GO:0044464 3.5.1.78,6.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 316.0
YYD2_k127_5205383_3 cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 312.0
YYD2_k127_5205383_4 Zinc-binding dehydrogenase K12957 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 300.0
YYD2_k127_5205383_5 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009958 269.0
YYD2_k127_5205383_6 protein histidine kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003658 269.0
YYD2_k127_5205383_7 6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000001627 254.0
YYD2_k127_5205383_8 - - - - 0.000000000000000000000000000000000000000002656 166.0
YYD2_k127_5205383_9 - - - - 0.0000000000000000000000000000000000002027 153.0
YYD2_k127_5206217_0 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 433.0
YYD2_k127_5206217_1 Sodium/calcium exchanger protein K07300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 423.0
YYD2_k127_5206217_2 cellular response to DNA damage stimulus K07340 - - 0.00000000000000000000000000000000004545 142.0
YYD2_k127_5221179_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003489 420.0
YYD2_k127_5221179_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 297.0
YYD2_k127_5221179_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008171 265.0
YYD2_k127_5221179_3 cobalamin-transporting ATPase activity - - - 0.0000000000000002142 87.0
YYD2_k127_522742_0 Monomeric isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1065.0
YYD2_k127_522742_1 Belongs to the IlvD Edd family - - - 5.697e-290 900.0
YYD2_k127_522742_2 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 512.0
YYD2_k127_522742_3 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 326.0
YYD2_k127_522742_4 TIGRFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003665 270.0
YYD2_k127_522742_5 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000001249 256.0
YYD2_k127_522742_6 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000006079 229.0
YYD2_k127_522742_7 Regulatory protein, FmdB - - - 0.000000000000000000007138 95.0
YYD2_k127_522742_8 - - - - 0.0000000000000474 75.0
YYD2_k127_522742_9 Amidohydrolase K10221 - 3.1.1.57 0.0008077 46.0
YYD2_k127_523093_0 PFAM ABC transporter related K06020 - 3.6.3.25 1.508e-299 925.0
YYD2_k127_523093_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 378.0
YYD2_k127_523093_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000002453 235.0
YYD2_k127_523093_3 6-phosphogluconate dehydrogenase (Decarboxylating) K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000004083 152.0
YYD2_k127_523093_4 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000005957 97.0
YYD2_k127_5232928_0 Belongs to the aldehyde dehydrogenase family K00130,K00135,K09472,K22187 - 1.2.1.16,1.2.1.20,1.2.1.79,1.2.1.8,1.2.1.99 1.334e-199 635.0
YYD2_k127_5232928_1 DinB superfamily - - - 0.0000000000000000000000000000000000009703 145.0
YYD2_k127_5232928_2 PFAM AMP-dependent synthetase and ligase K12508 - 6.2.1.34 0.0000000000000000000000001056 109.0
YYD2_k127_5232928_3 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000003222 91.0
YYD2_k127_5261617_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006068 379.0
YYD2_k127_5261617_1 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000002769 123.0
YYD2_k127_5261617_2 shikimate kinase activity - - - 0.00000000000000000000000000008032 120.0
YYD2_k127_5293425_0 belongs to the thioredoxin family K05838 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 446.0
YYD2_k127_5293425_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006234 341.0
YYD2_k127_5293425_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000004885 134.0
YYD2_k127_5293425_3 - - - - 0.000000000000000000007544 97.0
YYD2_k127_5293425_4 - - - - 0.000000000000000005637 96.0
YYD2_k127_5293425_5 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source K10778 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040008,GO:0044464,GO:0045927,GO:0048518,GO:0050789,GO:0065007,GO:0071944 2.1.1.63 0.00000000001984 66.0
YYD2_k127_5293425_6 Tetratricopeptide repeat - - - 0.00000000007587 75.0
YYD2_k127_5315011_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 339.0
YYD2_k127_5315011_1 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.00000000000000000000000000000000000003761 150.0
YYD2_k127_5315011_2 sequence-specific DNA binding - - - 0.0000000000000000000002687 106.0
YYD2_k127_5315011_3 - - - - 0.0000000000000000000009046 103.0
YYD2_k127_5317231_0 Putative citrate transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 528.0
YYD2_k127_5317231_1 Belongs to the MlaE permease family K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 326.0
YYD2_k127_5320047_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 1.412e-199 652.0
YYD2_k127_5320047_1 DNA polymerase LigD, ligase domain K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007092 519.0
YYD2_k127_5320047_2 Thymidylate synthase complementing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008988 378.0
YYD2_k127_5320047_3 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000002114 232.0
YYD2_k127_5320047_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000003157 195.0
YYD2_k127_5320047_6 Cupin domain - - - 0.000000653 53.0
YYD2_k127_5320047_7 - - - - 0.000001181 53.0
YYD2_k127_5320047_8 Spermine/spermidine synthase domain - - - 0.000008385 50.0
YYD2_k127_5320047_9 Anaphase-promoting complex subunit 4 WD40 domain - - - 0.00005235 51.0
YYD2_k127_5325766_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008519 324.0
YYD2_k127_5325766_1 PFAM aminotransferase class V - GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006807,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019752,GO:0042133,GO:0042136,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002659 274.0
YYD2_k127_5325766_2 Subtilase family K17734 - - 0.0000000000000000000000000146 126.0
YYD2_k127_5351506_0 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 440.0
YYD2_k127_5351506_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001572 276.0
YYD2_k127_5358149_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 422.0
YYD2_k127_5358149_1 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000003393 225.0
YYD2_k127_5359596_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008106 486.0
YYD2_k127_5359596_1 Pfam:KaiC K08482 - - 0.00000000000000000000000000000000000000000000000001351 186.0
YYD2_k127_5359596_2 KaiB K08481 - - 0.0000000000000000000000000000000000002054 143.0
YYD2_k127_5359596_3 photoreceptor activity K08481 - - 0.000000000000000000000000000003275 124.0
YYD2_k127_5377777_0 Protein of unknown function, DUF255 K06888 - - 1.13e-226 720.0
YYD2_k127_5377777_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000005294 231.0
YYD2_k127_5377777_2 Belongs to the fatty acid desaturase type 1 family K00507 - 1.14.19.1 0.00000000000000000000000000000000000002632 154.0
YYD2_k127_5377777_3 general stress protein - - - 0.0000000000000000004235 93.0
YYD2_k127_5377777_4 metal ion permease K07089 - - 0.00001308 52.0
YYD2_k127_538035_0 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 5.023e-291 907.0
YYD2_k127_538035_1 Putative zinc-binding metallo-peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 383.0
YYD2_k127_538035_2 Domain of unknown function (DUF4347) - - - 0.00000000000000000000000000000000000000000000000000000000000000000798 240.0
YYD2_k127_538035_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000003867 151.0
YYD2_k127_5403946_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 501.0
YYD2_k127_5403946_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004392 423.0
YYD2_k127_5403946_10 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000003189 127.0
YYD2_k127_5403946_11 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K00969,K09710 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113 2.7.7.18 0.0000000000000000000000000006395 119.0
YYD2_k127_5403946_12 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000004747 108.0
YYD2_k127_5403946_13 nuclease activity - - - 0.00000003413 61.0
YYD2_k127_5403946_14 E-Z type HEAT repeats K00239 - 1.3.5.1,1.3.5.4 0.0002365 53.0
YYD2_k127_5403946_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005366 364.0
YYD2_k127_5403946_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006 306.0
YYD2_k127_5403946_4 cation diffusion facilitator family transporter K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002148 266.0
YYD2_k127_5403946_5 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002564 260.0
YYD2_k127_5403946_6 Aminotransferase K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000004994 203.0
YYD2_k127_5403946_7 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000000001475 142.0
YYD2_k127_5403946_8 PFAM Phosphoribosyltransferase - - - 0.0000000000000000000000000000000000001539 149.0
YYD2_k127_5403946_9 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.0000000000000000000000000000000005958 139.0
YYD2_k127_5405807_0 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000193 180.0
YYD2_k127_5405807_1 DinB family - - - 0.000000000000000000000000000000000000005375 150.0
YYD2_k127_5405807_2 Calcineurin-like phosphoesterase K07098 - - 0.0000000000000000000000000000000000001629 153.0
YYD2_k127_5405807_3 domain protein K14194 - - 0.000000000000000000000000000000000005051 154.0
YYD2_k127_5405807_4 Protein conserved in bacteria - - - 0.000000000000000000000000000000494 133.0
YYD2_k127_5405807_5 - - - - 0.00000000000000000000003718 104.0
YYD2_k127_5405807_6 - - - - 0.0000000000000008458 90.0
YYD2_k127_5422041_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 553.0
YYD2_k127_5422041_1 lyase activity K11645 GO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0042802,GO:0044424,GO:0044444,GO:0044464 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 549.0
YYD2_k127_5422041_10 Putative prokaryotic signal transducing protein - - - 0.0000168 51.0
YYD2_k127_5422041_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003482 435.0
YYD2_k127_5422041_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 383.0
YYD2_k127_5422041_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001511 254.0
YYD2_k127_5422041_5 - - - - 0.0000000000000000000000000000000000000000000000000000000002782 209.0
YYD2_k127_5422041_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000002297 192.0
YYD2_k127_5422041_7 tRNA processing K04075,K14058 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 6.3.4.19 0.000000000000000000000000000000000000007661 151.0
YYD2_k127_5422041_8 Protein of unknown function (DUF2905) - - - 0.00000000000000009904 81.0
YYD2_k127_5422041_9 PP-loop family K14058 - - 0.0000000000000008313 82.0
YYD2_k127_542536_0 Transcriptional regulator PadR-like family K10947 - - 0.00000000000000000000000000000000000001578 147.0
YYD2_k127_542536_1 - - - - 0.000000000000000002731 95.0
YYD2_k127_542536_2 - - - - 0.000000009253 64.0
YYD2_k127_5430183_0 COG NOG10142 non supervised orthologous group - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452 467.0
YYD2_k127_5430183_1 Belongs to the glutaminase family K01425 - 3.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 297.0
YYD2_k127_5430183_2 Aspartate ammonia-lyase K01744 - 4.3.1.1 0.0000000161 61.0
YYD2_k127_5430183_3 Antibiotic biosynthesis monooxygenase - - - 0.0000001182 59.0
YYD2_k127_5459611_0 Circularly permuted ATP-grasp type 2 - - - 9.486e-262 833.0
YYD2_k127_5459611_1 PLD-like domain K06131 - - 1.067e-196 624.0
YYD2_k127_5459611_10 - - - - 0.00000000000000000000000008366 111.0
YYD2_k127_5459611_11 - - - - 0.00000000000000005235 86.0
YYD2_k127_5459611_12 Dehydrogenase K00114,K17760,K20936,K21676,K22473 - 1.1.2.8,1.1.2.9,1.1.5.5,1.1.9.1,1.17.2.2 0.000000003796 66.0
YYD2_k127_5459611_2 Circularly permuted ATP-grasp type 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 613.0
YYD2_k127_5459611_3 PFAM Glucose Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 507.0
YYD2_k127_5459611_4 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 505.0
YYD2_k127_5459611_5 A predicted alpha-helical domain with a conserved ER motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007997 402.0
YYD2_k127_5459611_6 Domain of unknown function (DUF4010) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 330.0
YYD2_k127_5459611_7 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003421 290.0
YYD2_k127_5459611_8 - - - - 0.0000000000000000000000000000000000000000000000000000001984 200.0
YYD2_k127_5459611_9 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000004569 173.0
YYD2_k127_5482273_0 ThiF family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 485.0
YYD2_k127_5482273_1 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 314.0
YYD2_k127_5482273_2 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000000000000003024 175.0
YYD2_k127_5482273_3 PIN domain - - - 0.0000000000000000000000001015 111.0
YYD2_k127_5482273_4 Trypsin K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000000000000000003174 97.0
YYD2_k127_550430_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 3.205e-197 649.0
YYD2_k127_550430_1 Protein of unknown function (DUF1800) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009494 405.0
YYD2_k127_550430_10 - - - - 0.000000001446 69.0
YYD2_k127_550430_2 H( )-stimulated, divalent metal cation uptake system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 379.0
YYD2_k127_550430_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005283 382.0
YYD2_k127_550430_4 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008037 351.0
YYD2_k127_550430_5 Bacterial extracellular solute-binding proteins, family 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000001844 237.0
YYD2_k127_550430_6 - - - - 0.000000000000000000000000000000001135 137.0
YYD2_k127_550430_7 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000005172 135.0
YYD2_k127_550430_8 - - - - 0.0000000000000000000000007634 107.0
YYD2_k127_550430_9 TIGRFAM autotransporter-associated beta strand repeat protein - - - 0.00000000000006892 86.0
YYD2_k127_5525415_0 COG3209 Rhs family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 408.0
YYD2_k127_5525415_1 SpoIVB peptidase S55 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 368.0
YYD2_k127_5525415_2 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 361.0
YYD2_k127_5525415_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000001738 197.0
YYD2_k127_5525415_4 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000001094 115.0
YYD2_k127_5525415_5 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000001204 90.0
YYD2_k127_5525415_6 cyclic nucleotide binding K04739,K10914 - - 0.0000000000000001075 90.0
YYD2_k127_554121_0 Iron-regulated membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007772 414.0
YYD2_k127_5564679_0 protein conserved in bacteria - - - 2.183e-200 640.0
YYD2_k127_5564679_1 mannitol 2-dehydrogenase activity K11690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 453.0
YYD2_k127_5564679_2 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.000000000000000000000000000000000000000000004706 177.0
YYD2_k127_5564679_3 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000813 161.0
YYD2_k127_5564679_4 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000001664 139.0
YYD2_k127_5564679_5 Molybdopterin oxidoreductase Fe4S4 domain K08357 - - 0.0000000000000000000000000000000004064 136.0
YYD2_k127_5575373_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0001968,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043236,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050840,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 562.0
YYD2_k127_5575373_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 542.0
YYD2_k127_5575373_2 Deoxyhypusine synthase K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 375.0
YYD2_k127_5575373_3 Putative cyclase K07130 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000004254 198.0
YYD2_k127_5575373_4 domain protein - - - 0.00004161 55.0
YYD2_k127_5585846_0 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 343.0
YYD2_k127_5585846_1 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.00000000000000000000000000000000000000001499 169.0
YYD2_k127_5589249_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00003,K00982,K00990,K06950,K15371 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 1.1.1.3,1.4.1.2,2.7.7.42,2.7.7.59,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 578.0
YYD2_k127_5589249_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 476.0
YYD2_k127_5589249_10 spectrin binding K15502,K15503,K16717 GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013 - 0.00000000000000000000000000009242 132.0
YYD2_k127_5589249_11 - - - - 0.0000000000000000000000000004656 118.0
YYD2_k127_5589249_12 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000009124 82.0
YYD2_k127_5589249_14 Peptidase M48 K03799 - - 0.0006611 48.0
YYD2_k127_5589249_2 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 376.0
YYD2_k127_5589249_3 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 308.0
YYD2_k127_5589249_4 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003448 277.0
YYD2_k127_5589249_5 extracellular solute-binding protein, family 1 K22003 - 5.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000002031 264.0
YYD2_k127_5589249_6 Histidine kinase - - - 0.000000000000000000000000000000000000000000000003261 189.0
YYD2_k127_5589249_7 DoxX-like family - - - 0.00000000000000000000000000000000000000001454 159.0
YYD2_k127_5589249_8 YCII-related domain - - - 0.0000000000000000000000000000000001535 138.0
YYD2_k127_5589249_9 - - - - 0.00000000000000000000000000000004579 136.0
YYD2_k127_5594006_0 PFAM Adenosylcobinamide amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000003113 243.0
YYD2_k127_5594006_1 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000005113 216.0
YYD2_k127_5645400_0 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 352.0
YYD2_k127_5645400_1 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000000000009279 166.0
YYD2_k127_5645400_2 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000008855 140.0
YYD2_k127_5645400_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000227 73.0
YYD2_k127_5645400_5 beta-propeller repeat - - - 0.0000001646 54.0
YYD2_k127_5645400_6 - - - - 0.000002884 50.0
YYD2_k127_5645400_7 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0001058 55.0
YYD2_k127_5647830_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 299.0
YYD2_k127_5647830_1 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000000000000000006677 152.0
YYD2_k127_5647830_2 - - - - 0.000000000000000000000000000000001284 136.0
YYD2_k127_5647830_3 beta-propeller repeat - - - 0.00000000000000000000000004831 112.0
YYD2_k127_5647830_4 deoxyhypusine monooxygenase activity - - - 0.00000000015 67.0
YYD2_k127_5651403_0 protein related to plant photosystem II stability assembly factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004315 406.0
YYD2_k127_5651403_1 PFAM Beta-lactamase K18988 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000009782 267.0
YYD2_k127_5651403_2 dioxygenase activity K00477 - 1.14.11.18 0.000000000000000000000000000000000000002101 157.0
YYD2_k127_5651403_3 Predicted membrane protein (DUF2306) - - - 0.0000000000000000000000000000000008769 139.0
YYD2_k127_5651403_4 ThiS family K03636 - - 0.000000000000000000001432 98.0
YYD2_k127_5651403_5 DNA-sulfur modification-associated - - - 0.0000000554 64.0
YYD2_k127_5658798_0 Sulfatase K01133 - 3.1.6.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 477.0
YYD2_k127_5658798_1 ankyrin repeat K15503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 452.0
YYD2_k127_5658798_3 DNA topological change K03168 - 5.99.1.2 0.00000004023 57.0
YYD2_k127_567327_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000918 171.0
YYD2_k127_567327_1 Glycosyl transferases group 1 - - - 0.00001175 58.0
YYD2_k127_5675755_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 3.817e-259 811.0
YYD2_k127_5675755_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 367.0
YYD2_k127_5675755_2 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000374 242.0
YYD2_k127_5675755_3 Protein of unknown function (DUF3592) - - - 0.00000000000283 78.0
YYD2_k127_5697517_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 4.608e-309 971.0
YYD2_k127_5697517_1 Dehydrogenase K17760 - 1.1.9.1 8.811e-258 815.0
YYD2_k127_5697517_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 557.0
YYD2_k127_5697517_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 525.0
YYD2_k127_5697517_4 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003749 324.0
YYD2_k127_5697517_5 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 305.0
YYD2_k127_5697517_6 - - - - 0.0000000000000000000000000000000003122 137.0
YYD2_k127_5697517_7 - - - - 0.00000000009691 72.0
YYD2_k127_5697517_8 Type II and III secretion system protein K02507,K02666 - - 0.000004625 59.0
YYD2_k127_5697517_9 Sporulation related domain - - - 0.00003298 56.0
YYD2_k127_5699067_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 534.0
YYD2_k127_5699067_1 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009532 442.0
YYD2_k127_5699067_2 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 313.0
YYD2_k127_5699067_3 - - - - 0.000000000000000000000000000000000000000000000000000001366 205.0
YYD2_k127_5699067_4 amine dehydrogenase activity - - - 0.000000000000000000000000000000004713 134.0
YYD2_k127_5699067_5 DinB family K07552 - - 0.00000000000000000006789 96.0
YYD2_k127_5709867_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.975e-307 982.0
YYD2_k127_5709867_1 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 5.001e-282 877.0
YYD2_k127_5709867_11 - - - - 0.0000000000000000000001364 102.0
YYD2_k127_5709867_12 RNA-binding S4 domain protein - - - 0.0000000000000000916 83.0
YYD2_k127_5709867_13 negative regulation of transcription, DNA-templated - - - 0.0000000000000001366 85.0
YYD2_k127_5709867_2 argininosuccinate lyase K01755,K14681 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002575 398.0
YYD2_k127_5709867_3 Arginosuccinate synthase K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 384.0
YYD2_k127_5709867_4 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 292.0
YYD2_k127_5709867_5 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000001827 180.0
YYD2_k127_5709867_6 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.000000000000000000000000000000000000000000000003474 179.0
YYD2_k127_5709867_7 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000000000000000000000001888 169.0
YYD2_k127_5709867_8 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000002788 135.0
YYD2_k127_5709867_9 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.00000000000000000000000000000009912 128.0
YYD2_k127_5754690_0 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 551.0
YYD2_k127_5754690_1 acyl-CoA dehydrogenase activity K00252 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.3.8.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 523.0
YYD2_k127_5754690_2 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 334.0
YYD2_k127_5754690_3 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000000000003173 201.0
YYD2_k127_5754690_4 PFAM peptidase S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000322 191.0
YYD2_k127_5754690_5 PFAM Histidine triad (HIT) protein K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000000000223 186.0
YYD2_k127_5754690_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.0000000000000000000000000000000000000008566 149.0
YYD2_k127_5754690_7 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.000000000000000000000000000000001495 136.0
YYD2_k127_5754690_8 Helix-hairpin-helix motif K02237 - - 0.00000000000008366 75.0
YYD2_k127_5754690_9 FR47-like protein K03789 - 2.3.1.128 0.000000000002297 71.0
YYD2_k127_5763492_0 Domain of unknown function (DUF5118) - - - 2.236e-226 734.0
YYD2_k127_5763492_2 Peroxiredoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000002324 215.0
YYD2_k127_5763492_3 - - - - 0.0000000000000000000000000000000000000000000000001053 184.0
YYD2_k127_5763492_4 - - - - 0.00000000000000000000000000000000000000000000001577 176.0
YYD2_k127_5763492_5 CHASE2 K01768 - 4.6.1.1 0.00000000000000000000000000000000006531 142.0
YYD2_k127_5763492_7 - - - - 0.0003438 51.0
YYD2_k127_5803972_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000524 589.0
YYD2_k127_5803972_1 PFAM delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 443.0
YYD2_k127_5803972_2 PFAM Organic solvent tolerance protein K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 312.0
YYD2_k127_5803972_3 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001487 269.0
YYD2_k127_5803972_4 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000002168 244.0
YYD2_k127_5803972_5 PFAM RDD domain containing protein - - - 0.0000000007652 67.0
YYD2_k127_5803972_6 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.0007236 47.0
YYD2_k127_5809_0 radical SAM domain protein - - - 1.186e-221 702.0
YYD2_k127_5809_1 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 423.0
YYD2_k127_5809_2 ClpX C4-type zinc finger - - - 0.0000000000000000000000000005866 119.0
YYD2_k127_5809_3 protein conserved in bacteria - - - 0.0000000000001547 70.0
YYD2_k127_5809_4 gluconolactonase activity K01045 - 3.1.1.2,3.1.8.1 0.000000000121 64.0
YYD2_k127_5810103_0 Belongs to the glutaminase family K01425 - 3.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 445.0
YYD2_k127_5810103_1 CotH kinase protein - - - 0.00000000000000000000000000000000000000000000000000000001098 207.0
YYD2_k127_5810103_2 Domain of unknown function (DUF4956) - - - 0.000000000000000000000000000000006842 137.0
YYD2_k127_5810103_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000004138 111.0
YYD2_k127_5810103_4 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000005355 109.0
YYD2_k127_5810103_5 VTC domain - - - 0.000000000000000000838 95.0
YYD2_k127_5819522_0 AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 538.0
YYD2_k127_5819522_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 349.0
YYD2_k127_5819522_10 COG1388 FOG LysM repeat - - - 0.00002717 56.0
YYD2_k127_5819522_11 - - - - 0.00006113 49.0
YYD2_k127_5819522_2 Major Facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 339.0
YYD2_k127_5819522_3 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 327.0
YYD2_k127_5819522_4 PFAM Transglycosylase SLT domain K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000005803 242.0
YYD2_k127_5819522_5 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000001452 204.0
YYD2_k127_5819522_6 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000009616 159.0
YYD2_k127_5819522_7 N-Acetylmuramoyl-L-alanine amidase K01447,K03806,K11066 - 3.5.1.28 0.000000000000000000000004708 104.0
YYD2_k127_5819522_8 Methyltransferase type 11 - - - 0.0000000000000001338 89.0
YYD2_k127_5819522_9 - - - - 0.00001694 53.0
YYD2_k127_5823466_0 peroxidase - - - 2.534e-218 689.0
YYD2_k127_5823466_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006493 544.0
YYD2_k127_5823466_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 284.0
YYD2_k127_5823466_3 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000002692 151.0
YYD2_k127_5836822_0 - - - - 0.0000000000000000000000000000000000000000624 168.0
YYD2_k127_5836822_1 Carbamoyltransferase C-terminus K00612 - - 0.000000000003181 67.0
YYD2_k127_5843402_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 7.942e-311 967.0
YYD2_k127_5843402_1 VIT family - - - 0.00000004378 56.0
YYD2_k127_5853784_0 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 431.0
YYD2_k127_5853784_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 342.0
YYD2_k127_5853784_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 303.0
YYD2_k127_5853784_3 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004022 277.0
YYD2_k127_5853784_4 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000002264 248.0
YYD2_k127_5853784_5 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000004708 123.0
YYD2_k127_5853784_7 - - - - 0.00001566 52.0
YYD2_k127_5889375_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01706 - 4.2.1.40 1.897e-232 722.0
YYD2_k127_5889375_1 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 347.0
YYD2_k127_5889375_2 Belongs to the glycosyl hydrolase 67 family K01235 - 3.2.1.139 0.0000000000000000006842 92.0
YYD2_k127_5900170_0 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 1.052e-229 733.0
YYD2_k127_5900170_1 BadF BadG BcrA BcrD - GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006040,GO:0006044,GO:0006082,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0045127,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901071,GO:1901135,GO:1901265,GO:1901363 - 0.00000000000000000000000000008177 127.0
YYD2_k127_5926746_0 transmembrane transport K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 539.0
YYD2_k127_5926746_1 ABC transporter (Permease) K02033,K13894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 412.0
YYD2_k127_5926746_2 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 403.0
YYD2_k127_5926746_3 microcin transport K13895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 396.0
YYD2_k127_5926746_4 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305 380.0
YYD2_k127_5926746_5 transmembrane transport K13893 - - 0.00000000000000000000000000000000000000000000000000005013 194.0
YYD2_k127_5926746_6 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.0000000000000000000000000000000000000000000001654 173.0
YYD2_k127_5926746_7 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000339 154.0
YYD2_k127_5933196_0 carbohydrate binding K13688 - - 1.627e-269 855.0
YYD2_k127_5933196_1 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 330.0
YYD2_k127_5933196_2 Protein of unknown function (DUF541) K09807 - - 0.000000000000000000000000000002489 130.0
YYD2_k127_5933196_3 - - - - 0.0000000000000000000000000001441 117.0
YYD2_k127_5961840_0 Sulfite reductase K00366,K00381,K00392 - 1.7.7.1,1.8.1.2,1.8.7.1 5.32e-291 911.0
YYD2_k127_5961840_1 ABC-type multidrug transport system ATPase K01990,K11050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 461.0
YYD2_k127_5961840_10 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.0000000000000000000000000000000000000000000005205 175.0
YYD2_k127_5961840_11 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000744 164.0
YYD2_k127_5961840_12 PhoQ Sensor - - - 0.0000000000000000000000000000000001913 137.0
YYD2_k127_5961840_13 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.000000000000000000000000000000006293 138.0
YYD2_k127_5961840_14 - - - - 0.0000000000000000000001988 104.0
YYD2_k127_5961840_15 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000001153 100.0
YYD2_k127_5961840_16 Protein of unknown function (DUF1800) - - - 0.000004603 51.0
YYD2_k127_5961840_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 422.0
YYD2_k127_5961840_3 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 415.0
YYD2_k127_5961840_4 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 359.0
YYD2_k127_5961840_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 346.0
YYD2_k127_5961840_6 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 - 2.3.1.29,2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006084 307.0
YYD2_k127_5961840_7 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003984 252.0
YYD2_k127_5961840_8 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000009482 229.0
YYD2_k127_5961840_9 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000001848 186.0
YYD2_k127_5964190_0 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007513 499.0
YYD2_k127_5964190_1 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000319 262.0
YYD2_k127_5964190_2 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000003005 267.0
YYD2_k127_5964190_3 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000003526 224.0
YYD2_k127_5964190_4 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000003622 211.0
YYD2_k127_5964190_5 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000009977 200.0
YYD2_k127_5964190_6 lipid kinase, YegS Rv2252 BmrU family - - - 0.00000000000000000000000000000000000000000000000000007183 198.0
YYD2_k127_5969403_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000218 257.0
YYD2_k127_5969403_1 Rubrerythrin K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000719 247.0
YYD2_k127_5969403_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000001885 215.0
YYD2_k127_5969403_3 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000000000000002571 142.0
YYD2_k127_5969403_5 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000003726 113.0
YYD2_k127_5969403_6 Surface antigen K07277,K09800 - - 0.00000000000000000000006215 103.0
YYD2_k127_5969403_7 RNA recognition motif - - - 0.0000000000000000832 83.0
YYD2_k127_5969403_8 - - - - 0.000000000000001371 77.0
YYD2_k127_5969403_9 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000005601 75.0
YYD2_k127_5995617_0 rRNA (guanine-N2-)-methyltransferase activity K15257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000139 286.0
YYD2_k127_5995617_1 methyltransferase activity - - - 0.00000000000000000000000000000000000000001805 164.0
YYD2_k127_5995617_2 PFAM Extradiol ring-cleavage dioxygenase LigAB LigA subunit K04100 - 1.13.11.8 0.0000000000000000000000006734 107.0
YYD2_k127_5995617_3 - - - - 0.0000000000000000000003764 107.0
YYD2_k127_6003087_0 PQQ-like domain - - - 1.62e-213 678.0
YYD2_k127_6003087_1 ABC-type Fe3 transport system permease component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006448 569.0
YYD2_k127_6003087_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K11072 - 3.6.3.30,3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000366 264.0
YYD2_k127_6003087_3 ASCH - - - 0.000000000000000000000000000000000000000001304 157.0
YYD2_k127_6003087_4 Belongs to the ClpA ClpB family K03696 - - 0.00000000000000000000000000000000000005367 152.0
YYD2_k127_6003087_5 Tetratricopeptide repeat - - - 0.000000000000000000000000000000001397 145.0
YYD2_k127_6005849_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.708e-194 616.0
YYD2_k127_6005849_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000006566 245.0
YYD2_k127_6005849_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000001133 220.0
YYD2_k127_600615_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 392.0
YYD2_k127_600615_1 5'-deoxynucleotidase activity K07023 - - 0.000000000000000000000000000000000000000000000000000000000000000000008211 239.0
YYD2_k127_600615_2 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000000002728 108.0
YYD2_k127_600615_3 CDP-alcohol phosphatidyltransferase - - - 0.00000000003951 64.0
YYD2_k127_6039914_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 8.272e-286 887.0
YYD2_k127_6039914_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000004089 264.0
YYD2_k127_6039914_10 Rhodanese Homology Domain - - - 0.0000000000000000000000446 103.0
YYD2_k127_6039914_11 cytochrome complex assembly K02198,K02200,K04016,K04017,K04018 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016491,GO:0016667,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0098552,GO:0098567,GO:1901564 - 0.0000000000000000001814 92.0
YYD2_k127_6039914_12 - - - - 0.0000000002045 68.0
YYD2_k127_6039914_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001555 265.0
YYD2_k127_6039914_4 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000009599 209.0
YYD2_k127_6039914_5 AAA domain, putative AbiEii toxin, Type IV TA system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000003496 201.0
YYD2_k127_6039914_6 ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 - - 0.00000000000000000000000000000000000000000000000000002081 198.0
YYD2_k127_6039914_7 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.0000000000000000000000000000000000000000000001735 176.0
YYD2_k127_6039914_8 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 - 3.5.4.5 0.00000000000000000000000000000000000006892 146.0
YYD2_k127_6039914_9 SnoaL-like polyketide cyclase - - - 0.000000000000000000000005375 107.0
YYD2_k127_6043951_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 474.0
YYD2_k127_6043951_1 TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 363.0
YYD2_k127_6043951_2 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000000000000001953 163.0
YYD2_k127_6043951_3 MacB-like periplasmic core domain - - - 0.00000000000000000000000002143 117.0
YYD2_k127_6046827_0 SMART metal-dependent phosphohydrolase, HD K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 317.0
YYD2_k127_6046827_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000004231 146.0
YYD2_k127_6046827_2 ATP:ADP antiporter activity K03301 - - 0.00000000000000000000000002807 122.0
YYD2_k127_6046827_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.0000000000000000000000000446 114.0
YYD2_k127_6046827_4 Belongs to the Fur family K03711 - - 0.00000000000000000005456 101.0
YYD2_k127_6046827_5 - - - - 0.000000000001155 78.0
YYD2_k127_6046827_6 Helix-hairpin-helix motif - - - 0.0002712 49.0
YYD2_k127_6057108_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 558.0
YYD2_k127_6057108_1 Permease, YjgP YjgQ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009559 394.0
YYD2_k127_6057108_2 Tyrosine recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 315.0
YYD2_k127_6057108_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000009318 119.0
YYD2_k127_6060178_0 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 318.0
YYD2_k127_6060178_1 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000007751 241.0
YYD2_k127_6060178_2 Aerotolerance regulator N-terminal - - - 0.000000000000000000000000000003195 138.0
YYD2_k127_6060178_3 - - - - 0.00000000000000001671 91.0
YYD2_k127_6095633_0 Formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0 1515.0
YYD2_k127_6095633_1 dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006021 292.0
YYD2_k127_6095633_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000111 252.0
YYD2_k127_6095633_3 NADH-dependant formate dehydrogenase delta subunit FdsD K00126 - 1.17.1.9 0.0000000000000000001575 89.0
YYD2_k127_609876_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1110.0
YYD2_k127_609876_1 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 419.0
YYD2_k127_609876_2 Associated with various cellular activities K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 392.0
YYD2_k127_609876_3 Von Willebrand factor type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 303.0
YYD2_k127_609876_4 von Willebrand factor type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001428 259.0
YYD2_k127_609876_5 fumarate reductase) cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000000000000000000000000006531 240.0
YYD2_k127_609876_6 - K01286 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000003527 214.0
YYD2_k127_609876_7 Penicillinase repressor - - - 0.0000000000000000000000000000000000000000000000002757 178.0
YYD2_k127_609876_8 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000000000000000000000000601 183.0
YYD2_k127_609876_9 DNA recombination K03631,K13582 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 - 0.00003979 56.0
YYD2_k127_6099508_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000004144 165.0
YYD2_k127_6099508_1 - - - - 0.00000000000001571 80.0
YYD2_k127_6099508_2 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015031,GO:0015833,GO:0015893,GO:0017038,GO:0019904,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0032991,GO:0033036,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0043213,GO:0044464,GO:0044877,GO:0045184,GO:0046677,GO:0046678,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0070887,GO:0071236,GO:0071237,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701 - 0.00000002203 67.0
YYD2_k127_6102709_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 4.362e-209 662.0
YYD2_k127_6102709_1 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 426.0
YYD2_k127_6102709_2 ferrous iron transmembrane transporter activity K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001339 282.0
YYD2_k127_6102709_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000006898 237.0
YYD2_k127_6102709_4 - - - - 0.0000000000000000000000000000000000000006592 153.0
YYD2_k127_6102709_5 Capsule assembly protein Wzi - - - 0.00000000000000000000003067 111.0
YYD2_k127_6102709_6 Pfam Cation efflux - - - 0.0000000000001466 79.0
YYD2_k127_6102709_7 FeoA K04758 - - 0.000000001562 63.0
YYD2_k127_6120632_0 unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003854 272.0
YYD2_k127_6120632_1 PFAM transposase mutator type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005612 264.0
YYD2_k127_6120632_2 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000004799 246.0
YYD2_k127_6120632_3 energy transducer activity K03832 - - 0.0000000000000000000000000000000000000000000000000000000000007258 224.0
YYD2_k127_6120632_4 Penicillinase repressor - - - 0.00000000000000000000000000000000000006091 146.0
YYD2_k127_6120632_5 Domain of unknown function (DUF4407) - - - 0.0001824 51.0
YYD2_k127_612922_0 Gkycosyl transferase family 4 group - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000729 470.0
YYD2_k127_612922_1 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000004262 109.0
YYD2_k127_612922_2 Chaperone - - - 0.000000000000003073 85.0
YYD2_k127_612922_3 TIGRFAM conserved repeat domain - - - 0.0003677 54.0
YYD2_k127_6140465_0 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 331.0
YYD2_k127_6140465_1 Major Facilitator Superfamily - - - 0.0004205 51.0
YYD2_k127_6140465_2 domain protein K13735,K18491,K20276 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0005272 52.0
YYD2_k127_614063_0 PrkA AAA domain K07180 - - 0.0 1020.0
YYD2_k127_614063_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 419.0
YYD2_k127_614063_2 tRNA 3'-trailer cleavage K00784 - 3.1.26.11 0.0000000000000000000000000000000000000005832 154.0
YYD2_k127_614063_3 regulatory protein, MerR - - - 0.00000000000000000000000000005574 121.0
YYD2_k127_614063_4 Cytochrome c - - - 0.00002173 54.0
YYD2_k127_614063_5 hydrolase K01048 - 3.1.1.5 0.0002839 44.0
YYD2_k127_6156130_0 TIGRFAM acetaldehyde dehydrogenase (acetylating) K00132 - 1.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006571 489.0
YYD2_k127_6156130_1 RNA polymerase sigma-54 factor K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 467.0
YYD2_k127_6156130_10 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000005387 84.0
YYD2_k127_6156130_11 - - - - 0.00000000003752 71.0
YYD2_k127_6156130_12 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.00001458 58.0
YYD2_k127_6156130_2 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 327.0
YYD2_k127_6156130_3 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 308.0
YYD2_k127_6156130_4 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000423 289.0
YYD2_k127_6156130_5 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000000009156 213.0
YYD2_k127_6156130_6 Calcineurin-like phosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000000000006798 197.0
YYD2_k127_6156130_7 - - - - 0.0000000000000000000000007998 117.0
YYD2_k127_6156130_8 membrane - - - 0.000000000000000000000002018 108.0
YYD2_k127_6156130_9 - - - - 0.0000000000000000008397 99.0
YYD2_k127_6168125_0 Dna alkylation repair - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000448 340.0
YYD2_k127_617307_0 Pyridine nucleotide-disulphide oxidoreductase - - - 1.211e-218 694.0
YYD2_k127_617307_1 CDP-alcohol phosphatidyltransferase - - - 0.00000000000000000000000000000000000000000000000001323 184.0
YYD2_k127_618034_0 PrpF protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 463.0
YYD2_k127_618034_1 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000006623 160.0
YYD2_k127_618034_2 - - - - 0.0000000000000000000000000000000000003328 148.0
YYD2_k127_618034_3 - - - - 0.000000000000000000000000000002609 124.0
YYD2_k127_618034_4 Sodium:sulfate symporter transmembrane region K03319,K14445 - - 0.00000000000000000000001711 100.0
YYD2_k127_6211730_0 Single Cache domain 2 K02480 - 2.7.13.3 0.0000000000000000000000000000000000000000000000001219 186.0
YYD2_k127_6211730_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000001539 125.0
YYD2_k127_6223983_0 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 608.0
YYD2_k127_6223983_1 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 601.0
YYD2_k127_6223983_10 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000003143 124.0
YYD2_k127_6223983_11 - - - - 0.00001474 53.0
YYD2_k127_6223983_2 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 321.0
YYD2_k127_6223983_3 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005481 307.0
YYD2_k127_6223983_4 protein-glutamate O-methyltransferase activity K00575,K03408,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000003086 259.0
YYD2_k127_6223983_5 Ankyrin repeats (many copies) - - - 0.0000000000000000000000000000000000000000000000000000000008339 224.0
YYD2_k127_6223983_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000003691 213.0
YYD2_k127_6223983_7 response to abiotic stimulus K06867 - - 0.000000000000000000000000000000000000000000000000000000367 216.0
YYD2_k127_6223983_8 PFAM phospholipase Carboxylesterase - - - 0.00000000000000000000000000000000000005198 151.0
YYD2_k127_6254194_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000926 425.0
YYD2_k127_6254194_1 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 339.0
YYD2_k127_6254194_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000001812 219.0
YYD2_k127_6254194_3 Biotin/lipoate A/B protein ligase family K03800 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 6.3.1.20 0.00000000000000000000000000000000000000000000003051 179.0
YYD2_k127_6254194_4 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000002496 167.0
YYD2_k127_6254194_5 Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner K03687 - - 0.000000000000000000000000000000007234 134.0
YYD2_k127_6254194_6 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.00000000000000000000000000000003344 134.0
YYD2_k127_6254194_7 Aminotransferase class I and II K10907 - - 0.0000000000000000000000000000001199 127.0
YYD2_k127_6254194_8 - - - - 0.0000000000000000014 95.0
YYD2_k127_6254194_9 amidase activity K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.0003133 43.0
YYD2_k127_6268142_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 8.65e-215 682.0
YYD2_k127_6268142_1 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009455 316.0
YYD2_k127_6268142_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000000000004409 196.0
YYD2_k127_6268142_3 - - - - 0.00000000000000000000000000000000000000000001454 166.0
YYD2_k127_6268142_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000005838 106.0
YYD2_k127_6268142_5 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000001672 91.0
YYD2_k127_6270832_0 receptor K16090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007374 388.0
YYD2_k127_6270832_1 pkhd-type hydroxylase K07336 GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0033554,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003532 266.0
YYD2_k127_6270832_2 Secretin and TonB N terminus short domain - - - 0.0002045 54.0
YYD2_k127_6284422_0 ATPase family associated with various cellular activities (AAA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008155 536.0
YYD2_k127_6284422_1 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.0000000000000000000000000000000000000000000000000000003462 203.0
YYD2_k127_6284422_2 - - - - 0.00000000000004039 83.0
YYD2_k127_6330673_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 533.0
YYD2_k127_6330673_1 Conserved hypothetical ATP binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 369.0
YYD2_k127_6330673_2 Phosphorylase superfamily K00772 - 2.4.2.28 0.00000000000000000000005397 101.0
YYD2_k127_6344325_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 508.0
YYD2_k127_6344325_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000002727 254.0
YYD2_k127_6344325_2 peptidyl-tyrosine sulfation - - - 0.000000000000005273 87.0
YYD2_k127_635234_0 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000001443 207.0
YYD2_k127_635234_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000001873 179.0
YYD2_k127_635234_2 Protein of unknown function (DUF2892) - - - 0.0000000000000000003042 96.0
YYD2_k127_635234_3 Helix-hairpin-helix motif K02237 - - 0.000000009802 61.0
YYD2_k127_6382954_0 PQQ enzyme repeat K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000002256 235.0
YYD2_k127_6382954_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000006695 237.0
YYD2_k127_6382954_2 3-phosphoshikimate 1-carboxyvinyltransferase activity K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000003019 216.0
YYD2_k127_6382954_3 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000002812 116.0
YYD2_k127_6388140_0 Transketolase, thiamine diphosphate binding domain - - - 1.228e-274 856.0
YYD2_k127_6388140_1 Ectoine synthase - - - 0.0000000000000000000000000000000000000000000000000000007193 194.0
YYD2_k127_6397217_0 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000166 230.0
YYD2_k127_6397217_1 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.00000000000000000000000000000000000001204 151.0
YYD2_k127_6397217_2 Carboxypeptidase regulatory-like domain - - - 0.000000000005413 72.0
YYD2_k127_6397217_3 alpha beta K06889 - - 0.00007541 53.0
YYD2_k127_6403898_0 protease with the C-terminal PDZ domain - - - 8.557e-263 823.0
YYD2_k127_6403898_1 Aldehyde dehydrogenase family K00141,K22187 - 1.2.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 377.0
YYD2_k127_6403898_2 alcohol dehydrogenase K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000001324 245.0
YYD2_k127_6403898_3 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000005066 72.0
YYD2_k127_651690_0 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 317.0
YYD2_k127_651690_1 PFAM ABC transporter K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 315.0
YYD2_k127_651690_2 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 301.0
YYD2_k127_651690_3 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 292.0
YYD2_k127_651690_4 SnoaL-like domain - - - 0.0000000000000000000000002472 109.0
YYD2_k127_671878_0 Glycosyl hydrolase family 57 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 447.0
YYD2_k127_671878_1 PFAM Phosphomethylpyrimidine kinase type-1 K00868,K00941,K14153 - 2.5.1.3,2.7.1.35,2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001498 276.0
YYD2_k127_671878_2 SMART PDZ DHR GLGF domain protein - - - 0.000000000000000000000000000000000000000000000007249 186.0
YYD2_k127_671878_3 Permease, YjgP YjgQ - - - 0.00000000002181 68.0
YYD2_k127_691537_0 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 616.0
YYD2_k127_691537_1 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 542.0
YYD2_k127_691537_10 - - - - 0.0000000000000000000000000001194 128.0
YYD2_k127_691537_11 - - - - 0.000000000000000000000000007333 119.0
YYD2_k127_691537_12 Sigma-70 region 2 K03088 - - 0.000000000000000000000000084 114.0
YYD2_k127_691537_13 - - - - 0.0000000000000000526 89.0
YYD2_k127_691537_2 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 462.0
YYD2_k127_691537_3 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 311.0
YYD2_k127_691537_4 HupE / UreJ protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003705 274.0
YYD2_k127_691537_5 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001467 272.0
YYD2_k127_691537_6 Thioredoxin-like [2Fe-2S] ferredoxin K00127 - - 0.0000000000000000000000000000000000000000000000000000000004576 207.0
YYD2_k127_691537_7 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000000000000002701 187.0
YYD2_k127_691537_8 CoA-transferase family III K07749 - 2.8.3.16 0.000000000000000000000000000000000004808 139.0
YYD2_k127_691537_9 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000001204 141.0
YYD2_k127_715635_0 ATP-grasp domain K01905,K22224 - 6.2.1.13 1.3e-250 792.0
YYD2_k127_715635_1 metalloendopeptidase activity K08602 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 3.093e-196 629.0
YYD2_k127_715635_2 Iron-containing alcohol dehydrogenase K11173 - 1.1.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 474.0
YYD2_k127_715635_3 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003677 407.0
YYD2_k127_715635_4 Cytochrome c K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001091 258.0
YYD2_k127_715635_5 - - - - 0.000000000000000000000000000000003533 134.0
YYD2_k127_747988_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0 1124.0
YYD2_k127_754256_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008687 572.0
YYD2_k127_754256_1 GntR family K11475 - - 0.00000000000000000000000000000000000000000000000000000766 198.0
YYD2_k127_754256_2 Protein of unknown function (DUF3237) - - - 0.0000000000000000000000000000000000000000000000000008618 187.0
YYD2_k127_754256_3 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000007112 96.0
YYD2_k127_754256_4 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000001123 74.0
YYD2_k127_754256_5 Protein of unknown function (DUF3060) - - - 0.000000002049 64.0
YYD2_k127_772100_0 PepSY-associated TM region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001602 286.0
YYD2_k127_772100_1 Ankyrin repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001114 270.0
YYD2_k127_772100_2 BlaR1 peptidase M56 - - - 0.000000000000000000000000000000000000000000000000003718 201.0
YYD2_k127_772100_3 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000003488 181.0
YYD2_k127_772100_4 Peptidase M56 - - - 0.000000000000000000000000000000000000002617 165.0
YYD2_k127_772100_5 TonB-dependent receptor plug K16090 - - 0.00000000000000000000000000000000000002339 150.0
YYD2_k127_772100_6 Penicillinase repressor - - - 0.00000000000000001407 83.0
YYD2_k127_782196_0 Malate synthase K01638 - 2.3.3.9 1.373e-297 923.0
YYD2_k127_782196_1 PFAM UvrD REP helicase K03657 - 3.6.4.12 2.806e-230 735.0
YYD2_k127_782196_10 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000006706 210.0
YYD2_k127_782196_11 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000004298 212.0
YYD2_k127_782196_12 COG0500 SAM-dependent methyltransferases - - - 0.0000000000000000000000000000000000000000000000000000002733 201.0
YYD2_k127_782196_13 ethanolamine catabolic process K04027 - - 0.000000000000000000000000000000000000000003603 156.0
YYD2_k127_782196_14 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028,K08697 - - 0.000000000000000000000000000000003114 130.0
YYD2_k127_782196_15 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 0.00000000000000000000000000000007383 126.0
YYD2_k127_782196_16 PFAM Xylose isomerase - - - 0.0000000000000000000000000008446 127.0
YYD2_k127_782196_17 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.000000000006527 69.0
YYD2_k127_782196_2 NHL repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 473.0
YYD2_k127_782196_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 447.0
YYD2_k127_782196_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000738 258.0
YYD2_k127_782196_6 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000671 239.0
YYD2_k127_782196_7 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000003197 237.0
YYD2_k127_782196_8 D-arabinono-1,4-lactone oxidase K00594 - 1.1.3.41 0.000000000000000000000000000000000000000000000000000000000000001222 235.0
YYD2_k127_782196_9 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000002876 234.0
YYD2_k127_805902_0 alcohol dehydrogenase K13979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 433.0
YYD2_k127_805902_1 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003095 256.0
YYD2_k127_805902_2 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.1 0.0000000000000000000000000000000000000000000000000003192 190.0
YYD2_k127_805902_3 Glyoxalase-like domain K06996 - - 0.0000000000000000000000000000104 132.0
YYD2_k127_810173_0 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000576 477.0
YYD2_k127_810173_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 324.0
YYD2_k127_810173_2 domain protein K14194 - - 0.0000000000000000000000000000000000000000000000000000000006526 223.0
YYD2_k127_810173_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000008786 168.0
YYD2_k127_810173_4 domain protein - - - 0.000000002164 70.0
YYD2_k127_810173_5 domain protein - - - 0.0007927 52.0
YYD2_k127_816144_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 283.0
YYD2_k127_816144_1 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000002496 268.0
YYD2_k127_816144_2 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000001612 234.0
YYD2_k127_816144_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000000000001313 124.0
YYD2_k127_816144_4 Putative esterase - - - 0.000000000002469 73.0
YYD2_k127_816144_5 Putative esterase - - - 0.000000000142 68.0
YYD2_k127_822418_0 ABC transporter, transmembrane K11085 - - 2.991e-226 716.0
YYD2_k127_822418_1 protease with the C-terminal PDZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 410.0
YYD2_k127_822418_2 heme binding K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000003669 175.0
YYD2_k127_822418_3 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000005454 113.0
YYD2_k127_822418_4 - - - - 0.0000000000000000001041 96.0
YYD2_k127_822418_5 peptidase U62, modulator of DNA gyrase - - - 0.000000000000001103 79.0
YYD2_k127_822418_6 Protein of unknown function (DUF3347) - - - 0.000002845 57.0
YYD2_k127_822863_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 561.0
YYD2_k127_822863_1 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 315.0
YYD2_k127_822863_2 Metallopeptidase family M24 K01262 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001736 292.0
YYD2_k127_822863_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000001215 234.0
YYD2_k127_822863_4 TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2 - - - 0.00000014 60.0
YYD2_k127_82626_0 gntR family - - - 0.0000000000000000000000000000000000000000000000000000007242 201.0
YYD2_k127_82626_1 - - - - 0.00000000000000000000000000000000000000001928 160.0
YYD2_k127_82626_2 - - - - 0.0000000000000000000000000000000001123 145.0
YYD2_k127_82626_3 - - - - 0.000000000000000000000000001461 116.0
YYD2_k127_82626_4 X-Pro dipeptidyl-peptidase (S15 family) K01303 - 3.4.19.1 0.00002946 51.0
YYD2_k127_832306_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 5.941e-285 890.0
YYD2_k127_832306_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000001055 241.0
YYD2_k127_832306_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000007449 135.0
YYD2_k127_832306_3 PFAM histidine triad (HIT) protein - - - 0.00000000000000001135 95.0
YYD2_k127_834086_0 Pfam:KaiC K08482 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 537.0
YYD2_k127_834086_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 533.0
YYD2_k127_834086_10 - - - - 0.0000000000000000000000005273 115.0
YYD2_k127_834086_11 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000523 87.0
YYD2_k127_834086_12 - - - - 0.000000000002267 73.0
YYD2_k127_834086_2 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000035 295.0
YYD2_k127_834086_3 domain protein K14194 - - 0.00000000000000000000000000000000000000000000000000000000000001687 237.0
YYD2_k127_834086_4 - - - - 0.00000000000000000000000000000000000000000000000000000003249 211.0
YYD2_k127_834086_5 COG0491 Zn-dependent hydrolases, including glyoxylases K13075 - 3.1.1.81 0.00000000000000000000000000000000000000000000000000000006018 205.0
YYD2_k127_834086_6 PFAM Prenyltransferase squalene oxidase - - - 0.0000000000000000000000000000000000000000001246 172.0
YYD2_k127_834086_7 - - - - 0.000000000000000000000000000001715 125.0
YYD2_k127_834086_8 - - - - 0.00000000000000000000000000005614 128.0
YYD2_k127_834086_9 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000002885 119.0
YYD2_k127_838289_0 dehydrogenase e1 component K00164 - 1.2.4.2 0.0 1128.0
YYD2_k127_838289_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 538.0
YYD2_k127_838289_2 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001966 273.0
YYD2_k127_838289_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000006078 145.0
YYD2_k127_838289_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000002304 141.0
YYD2_k127_838289_5 COG2217 Cation transport ATPase K17686 - 3.6.3.54 0.000000000006383 68.0
YYD2_k127_838289_6 S-acyltransferase activity K00627,K00658 - 2.3.1.12,2.3.1.61 0.000000007859 57.0
YYD2_k127_850361_0 Arylsulfotransferase (ASST) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007115 379.0
YYD2_k127_850361_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000009419 273.0
YYD2_k127_850361_2 Sigma-70 region 2 - - - 0.000000000000000000000000000000000000000000000000000000000000001323 226.0
YYD2_k127_86124_0 flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003127 285.0
YYD2_k127_86124_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009997 250.0
YYD2_k127_86124_2 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07006 - - 0.00000000000000000000000000001433 122.0
YYD2_k127_86124_3 pyridoxamine 5-phosphate - - - 0.00000000000000000000000001377 115.0
YYD2_k127_86124_4 Cytochrome c - - - 0.000000000000000001232 89.0
YYD2_k127_876217_0 Dehydrogenase K00117 - 1.1.5.2 1.155e-214 684.0
YYD2_k127_876217_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 312.0
YYD2_k127_876217_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000006043 232.0
YYD2_k127_876217_3 - - - - 0.00000000000000000000000000000000000000146 152.0
YYD2_k127_876819_0 selenocysteine insertion sequence binding K03833 GO:0000049,GO:0000166,GO:0001514,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034641,GO:0034645,GO:0035368,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 310.0
YYD2_k127_876819_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001041 293.0
YYD2_k127_876819_2 formate dehydrogenase K00127,K08350 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006091,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009326,GO:0009987,GO:0015942,GO:0015944,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0020037,GO:0022900,GO:0031224,GO:0031226,GO:0032787,GO:0032991,GO:0033554,GO:0036397,GO:0043436,GO:0044237,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0050896,GO:0051716,GO:0052738,GO:0055114,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.0000000000000000000000000000000000000000000000005064 183.0
YYD2_k127_876819_3 protein involved in formate dehydrogenase formation K02380 - - 0.0000000000000000000000000000004973 137.0
YYD2_k127_888859_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 363.0
YYD2_k127_888859_1 - - - - 0.000000000000000000000000000000000000000000009934 169.0
YYD2_k127_888859_2 Amidase - - - 0.0000000000000000000000000000000000000000007697 167.0
YYD2_k127_890170_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003084 509.0
YYD2_k127_890170_1 enterobactin catabolic process K00700,K07214,K16147 - 2.4.1.18,2.4.99.16 0.0000000000000000000000000000000000000000000000000000000004683 216.0
YYD2_k127_911236_0 Carboxypeptidase regulatory-like domain - - - 5.148e-298 960.0
YYD2_k127_911236_1 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 340.0
YYD2_k127_911236_2 Phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001886 287.0
YYD2_k127_911236_3 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000004099 235.0
YYD2_k127_911236_4 domain protein K14194 - - 0.000000000000000000000000000000000000000000000000007625 202.0
YYD2_k127_911236_5 domain protein - - - 0.00000000000000000000000000002034 135.0
YYD2_k127_914160_0 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 374.0
YYD2_k127_914160_1 PFAM ABC transporter related K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 346.0
YYD2_k127_914160_2 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.0000000000000000000000000000000000006182 144.0
YYD2_k127_92683_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 6.181e-212 674.0
YYD2_k127_92683_1 R3H domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 554.0
YYD2_k127_92683_2 Putative peptidoglycan binding domain K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 332.0
YYD2_k127_92683_3 alkylbase DNA N-glycosylase activity K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000001431 235.0
YYD2_k127_92683_4 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000007083 221.0
YYD2_k127_92683_5 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000000000004301 193.0
YYD2_k127_92683_6 to the N-terminal domain of Lon protease' K01338 - 3.4.21.53 0.000000000000000000000000000000003617 136.0
YYD2_k127_92683_7 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000001401 123.0
YYD2_k127_92683_9 YtxH-like protein - - - 0.00000000000000041 83.0
YYD2_k127_929834_0 Dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 562.0
YYD2_k127_929834_1 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 501.0
YYD2_k127_929834_2 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 485.0
YYD2_k127_929834_3 Trehalose utilisation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 410.0
YYD2_k127_929834_4 Protein involved in outer membrane biogenesis K07289,K07290 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032386,GO:0032879,GO:0032880,GO:0033157,GO:0044464,GO:0050789,GO:0051049,GO:0051223,GO:0060341,GO:0065007,GO:0070201,GO:0071944,GO:0090087,GO:0090313,GO:1903533,GO:1903827,GO:1905475 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 383.0
YYD2_k127_929834_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004784 296.0
YYD2_k127_929834_6 Response regulator receiver - - - 0.0007516 52.0
YYD2_k127_930413_0 His Kinase A (phosphoacceptor - - - 1.312e-212 698.0
YYD2_k127_930413_1 TonB-dependent receptor K02014 - - 1.939e-205 660.0
YYD2_k127_930413_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 573.0
YYD2_k127_930413_3 Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 336.0
YYD2_k127_930413_4 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002678 260.0
YYD2_k127_930413_5 Domain of unknown function (DUF4154) - - - 0.0000000000000000000000000000000003655 141.0
YYD2_k127_930413_6 response regulator K02282,K07705 - - 0.0000000000000000000000000000009682 126.0
YYD2_k127_93662_0 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 2.42e-198 625.0
YYD2_k127_93662_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 505.0
YYD2_k127_93662_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000004347 243.0
YYD2_k127_93662_3 PepSY-associated TM region - - - 0.000000000000000000000000000000000000000000004478 178.0
YYD2_k127_93662_4 Protein of unknown function (DUF3467) - - - 0.000000000000000000000000000001715 124.0
YYD2_k127_93662_5 Ribosomal RNA adenine dimethylase - - - 0.000000000000000000000279 104.0
YYD2_k127_93662_6 - - - - 0.0000000000000000003724 94.0
YYD2_k127_93662_7 metallopeptidase activity K01993,K13408,K16922 - - 0.00000000001025 65.0
YYD2_k127_93662_8 - - - - 0.0000000004355 67.0
YYD2_k127_93662_9 snoRNA binding - - - 0.00000000401 62.0
YYD2_k127_936948_0 COG0666 FOG Ankyrin repeat K06867 - - 0.000000000000000000000000000000000000001803 162.0
YYD2_k127_936948_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000008784 147.0
YYD2_k127_936948_2 domain protein K14194 - - 0.0000000000000000000000001529 120.0
YYD2_k127_936948_4 EamA-like transporter family K08978 - - 0.0000000000245 72.0
YYD2_k127_96319_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 2.162e-204 645.0
YYD2_k127_96319_1 Acetolactate synthase K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 569.0
YYD2_k127_96319_10 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000006088 169.0
YYD2_k127_96319_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000006016 118.0
YYD2_k127_96319_12 Chorismate mutase type II - - - 0.00000000000000000007866 91.0
YYD2_k127_96319_13 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000004347 63.0
YYD2_k127_96319_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 544.0
YYD2_k127_96319_3 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 484.0
YYD2_k127_96319_4 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 467.0
YYD2_k127_96319_5 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 397.0
YYD2_k127_96319_6 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 389.0
YYD2_k127_96319_7 Coenzyme A transferase K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 342.0
YYD2_k127_96319_8 Coenzyme A transferase K01029 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 323.0
YYD2_k127_96319_9 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000003655 184.0
YYD2_k127_994621_0 unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 321.0
YYD2_k127_994621_1 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009857 267.0
YYD2_k127_994621_10 Evidence 4 Homologs of previously reported genes of - - - 0.000000000003215 68.0
YYD2_k127_994621_11 PEP-CTERM motif - - - 0.00000000008016 66.0
YYD2_k127_994621_12 efflux transmembrane transporter activity - - - 0.000000003783 68.0
YYD2_k127_994621_13 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000006437 54.0
YYD2_k127_994621_14 lactoylglutathione lyase activity - - - 0.000003452 52.0
YYD2_k127_994621_15 NUDIX domain - - - 0.00005305 49.0
YYD2_k127_994621_16 efflux transmembrane transporter activity - - - 0.0002177 44.0
YYD2_k127_994621_2 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004063 257.0
YYD2_k127_994621_3 PFAM PKD domain containing protein - - - 0.000000000000000000000000000000000000000000000000008289 203.0
YYD2_k127_994621_4 TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family - - - 0.00000000000000000000000000000000000001316 147.0
YYD2_k127_994621_5 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000005189 136.0
YYD2_k127_994621_6 Protein of unknown function (DUF2442) - - - 0.0000000000000000000000000000002465 126.0
YYD2_k127_994621_7 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000004997 100.0
YYD2_k127_994621_8 ECF sigma factor - - - 0.000000000000193 72.0
YYD2_k127_994621_9 Methanol dehydrogenase K00114 - 1.1.2.8 0.0000000000004524 76.0