logo

Overview

ID MAG04635
Name YYD2_bin.15
Sample SMP0125
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order CACIAM-22H2
Family CACIAM-22H2
Genus DATFES01
Species DATFES01 sp035457725
Assembly information
Completeness (%) 99.17
Contamination (%) 1.0
GC content (%) 65.0
N50 (bp) 26,545
Genome size (bp) 3,833,000

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3663

Gene name Description KEGG GOs EC E-value Score Sequence
YYD2_k127_1004880_0 Heat shock 70 kDa protein K04043 - - 0.0 1026.0
YYD2_k127_1004880_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 484.0
YYD2_k127_1004880_10 periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000000000000000000000004031 187.0
YYD2_k127_1004880_11 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000007498 173.0
YYD2_k127_1004880_12 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000001043 138.0
YYD2_k127_1004880_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006525 460.0
YYD2_k127_1004880_3 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 387.0
YYD2_k127_1004880_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 386.0
YYD2_k127_1004880_5 amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 381.0
YYD2_k127_1004880_6 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 356.0
YYD2_k127_1004880_7 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 306.0
YYD2_k127_1004880_8 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000001985 265.0
YYD2_k127_1004880_9 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000009021 213.0
YYD2_k127_1050888_0 benzoyl-CoA oxygenase - - - 5.136e-259 803.0
YYD2_k127_1050888_1 Enoyl-CoA hydratase/isomerase - - - 1.034e-242 762.0
YYD2_k127_1050888_10 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 480.0
YYD2_k127_1050888_11 Mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 480.0
YYD2_k127_1050888_12 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 459.0
YYD2_k127_1050888_13 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 458.0
YYD2_k127_1050888_14 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 440.0
YYD2_k127_1050888_15 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 436.0
YYD2_k127_1050888_16 Binding-protein-dependent transport system inner membrane component K05814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 419.0
YYD2_k127_1050888_17 Selenocysteine lyase K04127 - 5.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 406.0
YYD2_k127_1050888_18 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 369.0
YYD2_k127_1050888_19 COG0842 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 360.0
YYD2_k127_1050888_2 PFAM AMP-dependent synthetase and ligase K04110 - 6.2.1.25 1.742e-228 719.0
YYD2_k127_1050888_20 COG0477 Permeases of the major facilitator superfamily K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 366.0
YYD2_k127_1050888_21 COG2041 Sulfite oxidase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 350.0
YYD2_k127_1050888_22 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 350.0
YYD2_k127_1050888_23 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 353.0
YYD2_k127_1050888_24 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 357.0
YYD2_k127_1050888_25 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006028 346.0
YYD2_k127_1050888_26 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 354.0
YYD2_k127_1050888_27 Branched-chain amino acid ATP-binding cassette transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 337.0
YYD2_k127_1050888_28 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 331.0
YYD2_k127_1050888_29 Periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 327.0
YYD2_k127_1050888_3 COG0744 Membrane carboxypeptidase (penicillin-binding protein) K05366 - 2.4.1.129,3.4.16.4 3.66e-214 685.0
YYD2_k127_1050888_30 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007269 324.0
YYD2_k127_1050888_31 PFAM ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 316.0
YYD2_k127_1050888_32 Sugar (and other) transporter K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 297.0
YYD2_k127_1050888_33 restriction endonuclease K07448 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008355 284.0
YYD2_k127_1050888_34 Coenzyme A transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002415 278.0
YYD2_k127_1050888_35 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000001966 243.0
YYD2_k127_1050888_36 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000003119 237.0
YYD2_k127_1050888_37 Helix-turn-helix domain, rpiR family - - - 0.00000000000000000000000000000000000000000000000000000000000019 222.0
YYD2_k127_1050888_38 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000001122 187.0
YYD2_k127_1050888_39 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000001295 202.0
YYD2_k127_1050888_4 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 8.598e-201 637.0
YYD2_k127_1050888_40 - - - - 0.0000000000000000000000000000000000000000000001135 175.0
YYD2_k127_1050888_41 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000000003928 155.0
YYD2_k127_1050888_42 transcriptional regulator - - - 0.000000000000000000000000000000000000013 149.0
YYD2_k127_1050888_43 Domain of unknown function (DUF427) - - - 0.00000000000000000000000000000000000003196 153.0
YYD2_k127_1050888_44 HpcH/HpaI aldolase/citrate lyase family K02510 - 4.1.2.52 0.00000000000000000001176 104.0
YYD2_k127_1050888_5 carbohydrate transport K02027,K05813 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 608.0
YYD2_k127_1050888_6 Aminotransferase class-III K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008788 518.0
YYD2_k127_1050888_7 benzoyl-CoA oxygenase K15511 - 1.14.13.208 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 509.0
YYD2_k127_1050888_8 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 501.0
YYD2_k127_1050888_9 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 493.0
YYD2_k127_1083548_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296 - - 0.0 1480.0
YYD2_k127_1083548_1 Bacterial extracellular solute-binding proteins, family 5 Middle K12368 - - 1.733e-257 806.0
YYD2_k127_1083548_10 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008051 335.0
YYD2_k127_1083548_11 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 323.0
YYD2_k127_1083548_13 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 307.0
YYD2_k127_1083548_14 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 294.0
YYD2_k127_1083548_15 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 288.0
YYD2_k127_1083548_16 transferase activity, transferring glycosyl groups K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005124 280.0
YYD2_k127_1083548_17 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001653 276.0
YYD2_k127_1083548_18 Polysaccharide pyruvyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001547 270.0
YYD2_k127_1083548_19 DNA-binding transcriptional activator of the SARP family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006572 265.0
YYD2_k127_1083548_2 Cys/Met metabolism PLP-dependent enzyme K01739,K01761 - 2.5.1.48,4.4.1.11 4.061e-199 631.0
YYD2_k127_1083548_20 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001018 253.0
YYD2_k127_1083548_21 Aspartyl Asparaginyl beta-hydroxylase - - - 0.0000000000000000000000000000000000000000000000000003603 195.0
YYD2_k127_1083548_22 Kdo2-lipid A biosynthetic process K02517,K20543,K22311 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016746,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.3.1.241,2.3.1.265 0.0000000000000000000000000000000000000000000000001439 189.0
YYD2_k127_1083548_23 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K19802 - 5.1.1.20 0.00000000000000000000000000000000000000000000009352 185.0
YYD2_k127_1083548_24 COG2801 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000003231 165.0
YYD2_k127_1083548_25 coenzyme F390 K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000004737 173.0
YYD2_k127_1083548_26 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000001179 139.0
YYD2_k127_1083548_27 ATP-grasp - - - 0.0000000000000000000000002321 120.0
YYD2_k127_1083548_28 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.000000000442 61.0
YYD2_k127_1083548_29 Tripartite tricarboxylate transporter TctB family - - - 0.000000003888 67.0
YYD2_k127_1083548_3 Binding-protein-dependent transport system inner membrane component K12369 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 501.0
YYD2_k127_1083548_30 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000008368 57.0
YYD2_k127_1083548_4 Tripartite tricarboxylate transporter TctA K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009963 497.0
YYD2_k127_1083548_5 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003405 466.0
YYD2_k127_1083548_6 Belongs to the ABC transporter superfamily K02031,K12371 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008348 446.0
YYD2_k127_1083548_7 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 431.0
YYD2_k127_1083548_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 414.0
YYD2_k127_1083548_9 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034,K12370,K13891 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 407.0
YYD2_k127_1101643_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 GO:0003674,GO:0003824,GO:0004474,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044464,GO:0046487,GO:0046912,GO:0071704 2.3.3.9 1.902e-240 756.0
YYD2_k127_1101643_1 Adenylate cyclase - - - 7.667e-232 732.0
YYD2_k127_1101643_10 Haem-degrading - - - 0.000000000000000000000000000000000000000000002601 175.0
YYD2_k127_1101643_11 Belongs to the BolA IbaG family K05527,K22066 - - 0.0000000000000000000000000000002241 126.0
YYD2_k127_1101643_13 Ankyrin repeats (3 copies) K06867 - - 0.000000001559 64.0
YYD2_k127_1101643_14 Ribbon-helix-helix domain - - - 0.00000002255 59.0
YYD2_k127_1101643_15 PFAM Bacterial regulatory proteins, gntR family - - - 0.0001454 46.0
YYD2_k127_1101643_2 Mg2 and Co2 transporter CorB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 489.0
YYD2_k127_1101643_3 HpcH/HpaI aldolase/citrate lyase family K08691 - 4.1.3.24,4.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 477.0
YYD2_k127_1101643_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004248 457.0
YYD2_k127_1101643_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 423.0
YYD2_k127_1101643_6 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 391.0
YYD2_k127_1101643_7 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000161 273.0
YYD2_k127_1101643_8 - - - - 0.0000000000000000000000000000000000000000000000000000007214 214.0
YYD2_k127_1101643_9 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000005423 201.0
YYD2_k127_1116461_0 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 507.0
YYD2_k127_1116461_1 Gkycosyl transferase family 4 group - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 500.0
YYD2_k127_1116461_10 - - - - 0.0000000000000002858 83.0
YYD2_k127_1116461_11 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins K03817 - - 0.0000000006558 69.0
YYD2_k127_1116461_12 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0001401 51.0
YYD2_k127_1116461_14 SMART Tetratricopeptide - - - 0.0007598 50.0
YYD2_k127_1116461_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 336.0
YYD2_k127_1116461_3 PFAM O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005061 284.0
YYD2_k127_1116461_4 COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000346 276.0
YYD2_k127_1116461_5 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002201 263.0
YYD2_k127_1116461_6 synthetase K16029 - - 0.00000000000000000000000000000000000000000000000000000002626 215.0
YYD2_k127_1116461_7 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000004552 169.0
YYD2_k127_1116461_8 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000000000000000000000000843 154.0
YYD2_k127_1116461_9 ETC complex I subunit conserved region - - - 0.00000000000000000000000000001244 120.0
YYD2_k127_1124213_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 7.802e-274 850.0
YYD2_k127_1144889_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1272.0
YYD2_k127_1144889_1 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 5.308e-224 700.0
YYD2_k127_1144889_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008759 326.0
YYD2_k127_1144889_3 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009107 299.0
YYD2_k127_1144889_4 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 297.0
YYD2_k127_1144889_5 protein containing LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003791 280.0
YYD2_k127_1144889_6 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000002372 232.0
YYD2_k127_1144889_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000002091 202.0
YYD2_k127_1144889_8 Cytochrome C' - - - 0.000000000000000002199 91.0
YYD2_k127_1144889_9 cytochrome - - - 0.0000000000002271 77.0
YYD2_k127_1172801_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.0 1022.0
YYD2_k127_1172801_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1020.0
YYD2_k127_1172801_10 2-Hydroxy-3-oxopropionate reductase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 440.0
YYD2_k127_1172801_11 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 407.0
YYD2_k127_1172801_12 homoserine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 398.0
YYD2_k127_1172801_13 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004137 349.0
YYD2_k127_1172801_14 Domain of unknown function DUF108 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 346.0
YYD2_k127_1172801_15 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007298 346.0
YYD2_k127_1172801_16 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009013 335.0
YYD2_k127_1172801_17 Selenocysteine synthase (Seryl-tRNASer selenium transferase) K01042 - 2.9.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 329.0
YYD2_k127_1172801_18 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 323.0
YYD2_k127_1172801_19 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003404 297.0
YYD2_k127_1172801_2 belongs to the aldehyde dehydrogenase family K22187 - - 8.686e-234 731.0
YYD2_k127_1172801_20 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003103 287.0
YYD2_k127_1172801_21 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000368 257.0
YYD2_k127_1172801_22 Ankyrin repeats (3 copies) - - - 0.000000000000000000000000000000000000000000000000000000000001443 218.0
YYD2_k127_1172801_23 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000000002715 207.0
YYD2_k127_1172801_24 transport system small permease component - - - 0.00000000000000000000000000009642 124.0
YYD2_k127_1172801_25 Ndr family - - - 0.0000000000005102 84.0
YYD2_k127_1172801_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 591.0
YYD2_k127_1172801_4 amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 573.0
YYD2_k127_1172801_5 Putative serine dehydratase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004381 533.0
YYD2_k127_1172801_6 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 529.0
YYD2_k127_1172801_7 COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 494.0
YYD2_k127_1172801_8 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 456.0
YYD2_k127_1172801_9 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 482.0
YYD2_k127_1175200_0 Linear amide C-N hydrolases, choloylglycine hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001251 266.0
YYD2_k127_1175200_1 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000004078 135.0
YYD2_k127_1175200_2 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000000000000000000001826 135.0
YYD2_k127_1175200_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000004286 63.0
YYD2_k127_1216183_0 Tripartite tricarboxylate transporter TctA family K07793 - - 2.028e-260 809.0
YYD2_k127_1216183_1 Adenylosuccinate lyase C-terminus K01857 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007388 524.0
YYD2_k127_1216183_10 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000000000000000000000000000000000000000008789 201.0
YYD2_k127_1216183_11 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000009618 139.0
YYD2_k127_1216183_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00018,K00058 - 1.1.1.29,1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 490.0
YYD2_k127_1216183_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005944 468.0
YYD2_k127_1216183_4 Oligopeptide/dipeptide transporter, C-terminal region K02032,K12372 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 439.0
YYD2_k127_1216183_5 Protocatechuate 3,4-dioxygenase beta subunit N terminal K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 400.0
YYD2_k127_1216183_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 373.0
YYD2_k127_1216183_7 Dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 291.0
YYD2_k127_1216183_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000002498 228.0
YYD2_k127_1216183_9 Hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000001443 218.0
YYD2_k127_1236419_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 9.152e-304 943.0
YYD2_k127_1236419_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 3.755e-226 708.0
YYD2_k127_1236419_10 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 509.0
YYD2_k127_1236419_11 CoA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 484.0
YYD2_k127_1236419_12 ubiquitin protein ligase binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 464.0
YYD2_k127_1236419_13 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 438.0
YYD2_k127_1236419_14 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007404 413.0
YYD2_k127_1236419_15 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004764 384.0
YYD2_k127_1236419_16 Helix-turn-helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 383.0
YYD2_k127_1236419_17 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 375.0
YYD2_k127_1236419_18 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 363.0
YYD2_k127_1236419_19 ABC transporter K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 351.0
YYD2_k127_1236419_2 Periplasmic binding protein domain K11959 - - 2.295e-216 677.0
YYD2_k127_1236419_20 ATPases associated with a variety of cellular activities K11963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 331.0
YYD2_k127_1236419_21 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 335.0
YYD2_k127_1236419_22 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 325.0
YYD2_k127_1236419_23 CobW/HypB/UreG, nucleotide-binding domain K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 327.0
YYD2_k127_1236419_24 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008223 319.0
YYD2_k127_1236419_25 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006179 317.0
YYD2_k127_1236419_26 Pfam Major Facilitator Superfamily K08223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005228 279.0
YYD2_k127_1236419_27 Trap-type c4-dicarboxylate transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008005 252.0
YYD2_k127_1236419_28 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007238 261.0
YYD2_k127_1236419_29 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001087 256.0
YYD2_k127_1236419_3 Tripartite tricarboxylate transporter TctA family - - - 9.473e-200 633.0
YYD2_k127_1236419_30 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004557 246.0
YYD2_k127_1236419_31 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.0000000000000000000000000000000000000000000000000000000001594 212.0
YYD2_k127_1236419_32 dioxygenase K03119 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000001502 216.0
YYD2_k127_1236419_33 - - - - 0.000000000000000000000000000000000000000000001444 176.0
YYD2_k127_1236419_34 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000000002087 174.0
YYD2_k127_1236419_35 Protein of unknown function (DUF2877) - - - 0.0000000000000000000000000000000000000000001418 171.0
YYD2_k127_1236419_36 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000000000000000000000000000000000005319 163.0
YYD2_k127_1236419_37 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000002414 160.0
YYD2_k127_1236419_38 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.00000000000000000000000000000000000002105 149.0
YYD2_k127_1236419_39 Protein of unknown function (DUF1622) - - - 0.00000000000000000000000004479 113.0
YYD2_k127_1236419_4 Protein of unknown function (DUF1116) - - - 1.544e-195 621.0
YYD2_k127_1236419_40 - - - - 0.000000000000000006231 90.0
YYD2_k127_1236419_5 ABC-type oligopeptide transport system, periplasmic component K02035,K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 613.0
YYD2_k127_1236419_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 586.0
YYD2_k127_1236419_7 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 563.0
YYD2_k127_1236419_8 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008788 540.0
YYD2_k127_1236419_9 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000401 536.0
YYD2_k127_125936_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0 1091.0
YYD2_k127_125936_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 3.376e-305 948.0
YYD2_k127_125936_10 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 312.0
YYD2_k127_125936_11 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003081 280.0
YYD2_k127_125936_12 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000001551 276.0
YYD2_k127_125936_13 haloacid dehalogenase, type II K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000003379 271.0
YYD2_k127_125936_14 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000001248 245.0
YYD2_k127_125936_15 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000000000000000000000004384 217.0
YYD2_k127_125936_16 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000000000000000004625 186.0
YYD2_k127_125936_17 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000001906 164.0
YYD2_k127_125936_18 membrane-associated Zn-dependent proteases 1 K16922 - - 0.0000000000000000000000000000000000001257 145.0
YYD2_k127_125936_19 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000000000009656 134.0
YYD2_k127_125936_2 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 511.0
YYD2_k127_125936_3 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 442.0
YYD2_k127_125936_4 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 372.0
YYD2_k127_125936_5 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 370.0
YYD2_k127_125936_6 Short-chain dehydrogenase reductase sdr - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003954 350.0
YYD2_k127_125936_7 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 332.0
YYD2_k127_125936_8 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 327.0
YYD2_k127_125936_9 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009748 307.0
YYD2_k127_1261761_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1107.0
YYD2_k127_1261761_1 ABC transporter transmembrane region K12541 - - 3.539e-229 731.0
YYD2_k127_1261761_10 Pilus assembly protein - - - 0.0000000000000000000000000000000000000000000000000003302 200.0
YYD2_k127_1261761_11 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000002182 178.0
YYD2_k127_1261761_12 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000000000000003328 118.0
YYD2_k127_1261761_13 - - - - 0.0000000000000000000000000005303 121.0
YYD2_k127_1261761_14 PFAM TadE family protein - - - 0.0000000000000000002085 102.0
YYD2_k127_1261761_15 tryptophan synthase subunit beta - - - 0.0000000000000001575 83.0
YYD2_k127_1261761_16 FAD linked oxidase K18930 - - 0.00000000000006988 75.0
YYD2_k127_1261761_17 - - - - 0.0000000000005139 73.0
YYD2_k127_1261761_18 - - - - 0.0000000000006201 78.0
YYD2_k127_1261761_2 Pilus formation protein N terminal region K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 441.0
YYD2_k127_1261761_20 Ribbon-helix-helix domain - - - 0.00000003194 64.0
YYD2_k127_1261761_21 TadE-like protein - - - 0.00000009581 62.0
YYD2_k127_1261761_23 - - - - 0.0005947 49.0
YYD2_k127_1261761_3 HlyD family secretion protein K02022,K12542 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 404.0
YYD2_k127_1261761_4 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009865 348.0
YYD2_k127_1261761_5 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 304.0
YYD2_k127_1261761_6 DNA restriction-modification system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 302.0
YYD2_k127_1261761_7 Type II/IV secretion system protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 293.0
YYD2_k127_1261761_8 Flp pilus assembly protein RcpC/CpaB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000785 265.0
YYD2_k127_1261761_9 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000378 200.0
YYD2_k127_1269880_0 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 0.0 1117.0
YYD2_k127_1269880_1 ABC-type dipeptide transport system periplasmic component K02035 - - 1.454e-305 942.0
YYD2_k127_1269880_10 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 433.0
YYD2_k127_1269880_11 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 431.0
YYD2_k127_1269880_12 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 416.0
YYD2_k127_1269880_13 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 394.0
YYD2_k127_1269880_14 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 372.0
YYD2_k127_1269880_15 Nitrate reductase gamma subunit K00374 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 326.0
YYD2_k127_1269880_16 protein involved in response to NO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 317.0
YYD2_k127_1269880_17 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004402 246.0
YYD2_k127_1269880_18 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000004076 246.0
YYD2_k127_1269880_19 DNA RNA non-specific endonuclease K01173 - - 0.000000000000000000000000000000000000000000000000000000000002117 220.0
YYD2_k127_1269880_2 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 1.632e-297 939.0
YYD2_k127_1269880_20 Nitrate reductase delta subunit K00373 - - 0.0000000000000000000000000000000000000000000000000000002026 204.0
YYD2_k127_1269880_21 AraC-binding-like domain - - - 0.0000000000000000000000000000000000000000000000278 183.0
YYD2_k127_1269880_22 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000009158 156.0
YYD2_k127_1269880_23 - - - - 0.00000000000000000000000000000000000003791 148.0
YYD2_k127_1269880_24 - - - - 0.000000000000000000000000000000000252 139.0
YYD2_k127_1269880_25 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000002421 134.0
YYD2_k127_1269880_3 Respiratory nitrate reductase beta C-terminal K00371 - 1.7.5.1 1.41e-290 902.0
YYD2_k127_1269880_4 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 9.809e-279 863.0
YYD2_k127_1269880_5 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 8.729e-212 671.0
YYD2_k127_1269880_6 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 552.0
YYD2_k127_1269880_7 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 539.0
YYD2_k127_1269880_8 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 507.0
YYD2_k127_1269880_9 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 436.0
YYD2_k127_1308051_0 COG1840 ABC-type Fe3 transport system, periplasmic component K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006375 556.0
YYD2_k127_1308051_1 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 509.0
YYD2_k127_1308051_10 Belongs to the bacterial solute-binding protein 3 family K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 388.0
YYD2_k127_1308051_11 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 376.0
YYD2_k127_1308051_12 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007461 354.0
YYD2_k127_1308051_13 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 347.0
YYD2_k127_1308051_14 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 345.0
YYD2_k127_1308051_15 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 350.0
YYD2_k127_1308051_16 cytosine deaminase K01485 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050228,GO:0050279 3.5.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 337.0
YYD2_k127_1308051_17 COG1177 ABC-type spermidine putrescine transport system, permease component II K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 322.0
YYD2_k127_1308051_18 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 321.0
YYD2_k127_1308051_19 Allophanate hydrolase K01457 - 3.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 316.0
YYD2_k127_1308051_2 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 501.0
YYD2_k127_1308051_20 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 295.0
YYD2_k127_1308051_21 COG0555 ABC-type sulfate transport system, permease component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 278.0
YYD2_k127_1308051_22 Allophanate hydrolase subunit 1 K01457 - 3.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000002186 248.0
YYD2_k127_1308051_23 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000388 249.0
YYD2_k127_1308051_24 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000005095 192.0
YYD2_k127_1308051_25 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000001339 160.0
YYD2_k127_1308051_26 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000004421 131.0
YYD2_k127_1308051_27 DoxX K15977 - - 0.00000000000000000000000000000007685 133.0
YYD2_k127_1308051_28 Endoribonuclease L-PSP - - - 0.0000000000000000000000000005362 120.0
YYD2_k127_1308051_3 Cobalamin-independent synthase, Catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 489.0
YYD2_k127_1308051_4 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 468.0
YYD2_k127_1308051_5 Binding-protein-dependent transport system inner membrane component K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 438.0
YYD2_k127_1308051_6 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 433.0
YYD2_k127_1308051_7 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 420.0
YYD2_k127_1308051_8 amino acid ABC transporter K02029,K09971,K10002,K10037 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 398.0
YYD2_k127_1308051_9 TOBE domain K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 395.0
YYD2_k127_1355300_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15785 - 2.6.1.76 1.385e-195 623.0
YYD2_k127_1355300_1 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009496 491.0
YYD2_k127_1355300_2 BFD-like [2Fe-2S] binding domain - - - 0.00000000000000000000000000000000000000002163 155.0
YYD2_k127_1355300_3 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.0000000000004144 71.0
YYD2_k127_1358824_0 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 3.854e-228 722.0
YYD2_k127_1360961_0 de-polymerase K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 532.0
YYD2_k127_1360961_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 506.0
YYD2_k127_1360961_2 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007554 443.0
YYD2_k127_1360961_3 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 425.0
YYD2_k127_1360961_4 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 404.0
YYD2_k127_1360961_5 PFAM Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 333.0
YYD2_k127_1360961_6 Precorrin-6x reductase CbiJ/CobK K05895 - 1.3.1.106,1.3.1.54 0.000000000000000000000000000000000000000000000000000000000000000007631 235.0
YYD2_k127_1360961_7 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000001747 217.0
YYD2_k127_1360961_8 protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000009393 194.0
YYD2_k127_1360961_9 Ankyrin repeat - - - 0.0000000000000000000000001232 113.0
YYD2_k127_136563_0 TRAP transporter solute receptor TAXI family - - - 0.000000000000000000000000000000000000000000000000000000000000000006421 233.0
YYD2_k127_136563_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000006281 219.0
YYD2_k127_136563_2 Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma- L-glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine - - - 0.000000000000000000000000000000000000000000000000001787 196.0
YYD2_k127_1365747_0 His Kinase A (phosphoacceptor) domain - - - 9.733e-263 844.0
YYD2_k127_1365747_1 Belongs to the RtcB family K14415,K18148 - 6.5.1.3 6.434e-214 673.0
YYD2_k127_1365747_10 COG0811 Biopolymer transport proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 302.0
YYD2_k127_1365747_11 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 300.0
YYD2_k127_1365747_12 Secreted protein, containing von Willebrand factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006062 295.0
YYD2_k127_1365747_13 von Willebrand factor (VWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003474 271.0
YYD2_k127_1365747_14 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004574 260.0
YYD2_k127_1365747_15 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000004375 233.0
YYD2_k127_1365747_16 Response regulator receiver K11443 - - 0.00000000000000000000000000000000000000000000000000000000004128 208.0
YYD2_k127_1365747_17 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000001324 189.0
YYD2_k127_1365747_18 'Cold-shock' DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000134 190.0
YYD2_k127_1365747_19 BON domain - - - 0.00000000000000000000000000000000000000000000002845 179.0
YYD2_k127_1365747_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 1.864e-195 623.0
YYD2_k127_1365747_20 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000004616 163.0
YYD2_k127_1365747_21 Protein of unknown function (DUF3775) - - - 0.0000000000000000000000000000000000000000187 157.0
YYD2_k127_1365747_22 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000007469 149.0
YYD2_k127_1365747_23 - - - - 0.00000000000000000000005125 102.0
YYD2_k127_1365747_24 Polysaccharide deacetylase - - - 0.0000000000000005639 85.0
YYD2_k127_1365747_25 AMP binding - - - 0.0000000000001138 78.0
YYD2_k127_1365747_26 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000002637 77.0
YYD2_k127_1365747_27 EF hand - - - 0.0004539 52.0
YYD2_k127_1365747_3 Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 467.0
YYD2_k127_1365747_4 Sulfatase-modifying factor enzyme 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 477.0
YYD2_k127_1365747_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007985 430.0
YYD2_k127_1365747_6 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 392.0
YYD2_k127_1365747_7 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009879 396.0
YYD2_k127_1365747_8 S-Adenosylmethionine synthetase K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 376.0
YYD2_k127_1365747_9 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 306.0
YYD2_k127_141470_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1052.0
YYD2_k127_141470_1 Participates in both transcription termination and antitermination K02600 - - 1.076e-242 758.0
YYD2_k127_141470_10 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000009679 133.0
YYD2_k127_141470_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 5.825e-200 629.0
YYD2_k127_141470_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 499.0
YYD2_k127_141470_4 COG1253 Hemolysins and related proteins containing CBS domains K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 321.0
YYD2_k127_141470_5 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000002475 237.0
YYD2_k127_141470_6 transcriptional - - - 0.0000000000000000000000000000000000000000000000001212 183.0
YYD2_k127_141470_7 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000001578 174.0
YYD2_k127_141470_8 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000003707 156.0
YYD2_k127_141470_9 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.000000000000000000000000000000000000009719 157.0
YYD2_k127_1435914_0 Required for chromosome condensation and partitioning K03529 - - 6.123e-309 984.0
YYD2_k127_1435914_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 6.592e-258 808.0
YYD2_k127_1435914_10 COG3839 ABC-type sugar transport systems, ATPase components K05816 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 462.0
YYD2_k127_1435914_11 Binding-protein-dependent transport system inner membrane component K05814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 434.0
YYD2_k127_1435914_12 Binding-protein-dependent transport system inner membrane component K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 436.0
YYD2_k127_1435914_13 COG1194 A G-specific DNA glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 433.0
YYD2_k127_1435914_14 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007507 432.0
YYD2_k127_1435914_15 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 317.0
YYD2_k127_1435914_16 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
YYD2_k127_1435914_17 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000001253 260.0
YYD2_k127_1435914_18 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000001073 240.0
YYD2_k127_1435914_19 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000001203 241.0
YYD2_k127_1435914_2 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.653e-245 769.0
YYD2_k127_1435914_20 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002452 249.0
YYD2_k127_1435914_21 RNase H K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000006944 226.0
YYD2_k127_1435914_22 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000001829 225.0
YYD2_k127_1435914_23 Protein conserved in bacteria K09931 - - 0.0000000000000000000000000000000000000000000000000000003495 199.0
YYD2_k127_1435914_24 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000008918 188.0
YYD2_k127_1435914_25 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000002539 179.0
YYD2_k127_1435914_26 Protein of unknown function (DUF541) - - - 0.000000000000000000000000000000000000000000000003228 188.0
YYD2_k127_1435914_27 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000002654 154.0
YYD2_k127_1435914_28 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000000000006599 156.0
YYD2_k127_1435914_29 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000001445 135.0
YYD2_k127_1435914_3 ABC-type sugar transport system periplasmic component K02027,K05813,K17244 - - 6.547e-213 668.0
YYD2_k127_1435914_30 - - - - 0.00000000000000000000000000000001717 133.0
YYD2_k127_1435914_31 Iron-binding zinc finger CDGSH type - - - 0.00000000000000000000000000000007745 126.0
YYD2_k127_1435914_32 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000005451 122.0
YYD2_k127_1435914_33 - - - - 0.00000000000000000000000001029 119.0
YYD2_k127_1435914_34 Thiol disulfide interchange protein K04084 - 1.8.1.8 0.00000000000000000000005944 99.0
YYD2_k127_1435914_35 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000006577 105.0
YYD2_k127_1435914_36 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000004673 107.0
YYD2_k127_1435914_37 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives - - - 0.000000000000001185 83.0
YYD2_k127_1435914_38 - - - - 0.00000000000000189 85.0
YYD2_k127_1435914_39 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000001478 73.0
YYD2_k127_1435914_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 3.868e-197 623.0
YYD2_k127_1435914_40 Transposase DDE domain - - - 0.00000000001986 69.0
YYD2_k127_1435914_41 Transposase DDE domain - - - 0.0000000004285 65.0
YYD2_k127_1435914_5 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 538.0
YYD2_k127_1435914_6 Glycine cleavage system T protein K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008891 505.0
YYD2_k127_1435914_7 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008678 488.0
YYD2_k127_1435914_8 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 466.0
YYD2_k127_1435914_9 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003586 460.0
YYD2_k127_1465590_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 5.271e-296 918.0
YYD2_k127_1465590_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 491.0
YYD2_k127_1465590_2 Chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 371.0
YYD2_k127_1465590_3 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 308.0
YYD2_k127_1465590_4 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 296.0
YYD2_k127_1465590_5 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003683 275.0
YYD2_k127_1465590_6 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000000002416 198.0
YYD2_k127_1465590_7 relative of glutathione S-transferase, MAPEG superfamily K07136 - - 0.0000000000000000000002443 102.0
YYD2_k127_1483853_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 5.122e-246 779.0
YYD2_k127_1483853_1 Psort location Cytoplasmic, score 7.50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007962 558.0
YYD2_k127_1483853_10 Succinylglutamate desuccinylase aspartoacylase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 309.0
YYD2_k127_1483853_11 Beta-lactamase superfamily domain K06167 - 3.1.4.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 295.0
YYD2_k127_1483853_12 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001261 288.0
YYD2_k127_1483853_13 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002657 268.0
YYD2_k127_1483853_14 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000002557 244.0
YYD2_k127_1483853_15 Gram-negative-bacterium-type cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000000000001534 210.0
YYD2_k127_1483853_16 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000007687 154.0
YYD2_k127_1483853_17 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000171 78.0
YYD2_k127_1483853_18 protein-S-isoprenylcysteine methyltransferase - - - 0.00003361 54.0
YYD2_k127_1483853_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 436.0
YYD2_k127_1483853_3 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 437.0
YYD2_k127_1483853_4 Lytic murein transglycosylase K08305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 382.0
YYD2_k127_1483853_5 3-Hydroxyisobutyrate dehydrogenase K00020,K00042 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 376.0
YYD2_k127_1483853_6 DNA polymerase III subunit delta K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 363.0
YYD2_k127_1483853_7 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003143 331.0
YYD2_k127_1483853_8 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 328.0
YYD2_k127_1483853_9 Belongs to the short-chain dehydrogenases reductases (SDR) family K16066 - 1.1.1.381 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 333.0
YYD2_k127_1484845_0 Carbamoyltransferase C-terminus K00612 - - 1.003e-307 954.0
YYD2_k127_1484845_1 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005298 371.0
YYD2_k127_1484845_10 - - - - 0.00000000000000000000000001547 114.0
YYD2_k127_1484845_11 Pfam:Arch_ATPase K02450 - - 0.000000000000001224 91.0
YYD2_k127_1484845_12 Domain of unknown function (DUF4149) - - - 0.00000000000001721 79.0
YYD2_k127_1484845_13 - - - - 0.000000000000641 69.0
YYD2_k127_1484845_14 lipolytic protein G-D-S-L family - - - 0.0004427 51.0
YYD2_k127_1484845_2 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006226 326.0
YYD2_k127_1484845_3 gluconolactonase activity K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 301.0
YYD2_k127_1484845_4 Glycosyl transferase, family 2 K07011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001425 286.0
YYD2_k127_1484845_5 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005655 256.0
YYD2_k127_1484845_6 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000006805 235.0
YYD2_k127_1484845_7 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000002336 228.0
YYD2_k127_1484845_8 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000001858 160.0
YYD2_k127_1484845_9 transferase activity, transferring glycosyl groups K07011,K13659 - 2.4.1.264 0.00000000000000000000000000000000000001162 161.0
YYD2_k127_1501114_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1358.0
YYD2_k127_1501114_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 2.834e-242 766.0
YYD2_k127_1501114_10 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000000002545 212.0
YYD2_k127_1501114_11 COG2030 Acyl dehydratase K17865 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0022607,GO:0042620,GO:0042621,GO:0043933,GO:0044085,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901576 4.2.1.55 0.0000000000000000000000000000000000000000000000000000000006605 207.0
YYD2_k127_1501114_12 Protein of unknown function (DUF3035) - - - 0.0000000000000000000000000000000000000000000000000000001325 200.0
YYD2_k127_1501114_13 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000000000000000003935 198.0
YYD2_k127_1501114_14 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000003619 159.0
YYD2_k127_1501114_15 cytochrome - - - 0.0000000000000000000000000009582 115.0
YYD2_k127_1501114_16 - - - - 0.0000000000000001521 87.0
YYD2_k127_1501114_2 COG2041 Sulfite oxidase and related enzymes K00387 - 1.8.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 593.0
YYD2_k127_1501114_3 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 494.0
YYD2_k127_1501114_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 439.0
YYD2_k127_1501114_5 Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 428.0
YYD2_k127_1501114_6 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 334.0
YYD2_k127_1501114_7 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 321.0
YYD2_k127_1501114_8 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 331.0
YYD2_k127_1501114_9 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000001673 267.0
YYD2_k127_1561561_0 FAD dependent oxidoreductase - - - 0.0 1132.0
YYD2_k127_1561561_1 ABC-type oligopeptide transport system, periplasmic component K02035,K13893 - - 1.771e-241 760.0
YYD2_k127_1561561_10 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 466.0
YYD2_k127_1561561_11 Adenosine/AMP deaminase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 417.0
YYD2_k127_1561561_12 SMP-30/Gluconolaconase/LRE-like region K02352 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 408.0
YYD2_k127_1561561_13 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 388.0
YYD2_k127_1561561_14 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002952 377.0
YYD2_k127_1561561_15 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 376.0
YYD2_k127_1561561_16 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 372.0
YYD2_k127_1561561_17 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 355.0
YYD2_k127_1561561_18 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 337.0
YYD2_k127_1561561_19 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 309.0
YYD2_k127_1561561_2 Belongs to the ABC transporter superfamily K13896 - - 1.127e-233 735.0
YYD2_k127_1561561_20 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 308.0
YYD2_k127_1561561_21 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 301.0
YYD2_k127_1561561_22 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 289.0
YYD2_k127_1561561_23 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000001936 272.0
YYD2_k127_1561561_24 PFAM regulatory protein DeoR K02444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001204 252.0
YYD2_k127_1561561_25 radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000001432 253.0
YYD2_k127_1561561_26 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000001795 242.0
YYD2_k127_1561561_27 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000001508 239.0
YYD2_k127_1561561_28 Domain of unknown function (DUF4439) - - - 0.000000000000000000000000000000000000000000000000000000000000001521 224.0
YYD2_k127_1561561_29 COG3474 Cytochrome c2 K08738 - - 0.00000000000000000000000000000000000000000000001103 177.0
YYD2_k127_1561561_3 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007307 606.0
YYD2_k127_1561561_30 Transcriptional regulator, TetR family - - - 0.00000000000000000000000000000000000000000003178 167.0
YYD2_k127_1561561_31 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000000000000000000000000000000000000001187 153.0
YYD2_k127_1561561_32 Cytochrome c - - - 0.000000000000000000000000000000000000005008 150.0
YYD2_k127_1561561_33 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000001204 151.0
YYD2_k127_1561561_34 Anti-sigma-K factor rskA - - - 0.00000000000000000000000000000000000002561 154.0
YYD2_k127_1561561_35 PFAM glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000252 142.0
YYD2_k127_1561561_36 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000001006 112.0
YYD2_k127_1561561_37 DNA-binding transcription factor activity - - - 0.000000000000000000000006211 108.0
YYD2_k127_1561561_38 DsrE/DsrF-like family K06039 - - 0.00000000000000000111 87.0
YYD2_k127_1561561_39 DsrE/DsrF-like family K06039 - - 0.00003161 49.0
YYD2_k127_1561561_4 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 602.0
YYD2_k127_1561561_40 PAS domain - - - 0.0002535 50.0
YYD2_k127_1561561_5 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004717 587.0
YYD2_k127_1561561_6 transport system, permease component K13894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 573.0
YYD2_k127_1561561_7 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 573.0
YYD2_k127_1561561_8 transport system, permease component K13895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 562.0
YYD2_k127_1561561_9 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 517.0
YYD2_k127_1604452_0 DDE superfamily endonuclease K07494 - - 0.00000000000000000000000000000000000000000000001283 174.0
YYD2_k127_1604452_1 Transposase or inactivated derivative K07494 - - 0.0000000000000000000004423 99.0
YYD2_k127_1604452_2 Thermolysin metallopeptidase, alpha-helical domain K01400 GO:0005575,GO:0005576 3.4.24.28 0.000000000000000000003862 106.0
YYD2_k127_1610476_0 FAD linked oxidases, C-terminal domain K18930 - - 0.0 1330.0
YYD2_k127_1610476_1 Belongs to the IlvD Edd family K13875 - 4.2.1.25 2.105e-301 932.0
YYD2_k127_1610476_10 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 558.0
YYD2_k127_1610476_11 5-aminolevulinic acid synthase K00643 - 2.3.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 557.0
YYD2_k127_1610476_12 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 535.0
YYD2_k127_1610476_13 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 511.0
YYD2_k127_1610476_14 ABC transporter K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 515.0
YYD2_k127_1610476_15 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 506.0
YYD2_k127_1610476_16 Mannitol dehydrogenase K00040 - 1.1.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 516.0
YYD2_k127_1610476_17 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 505.0
YYD2_k127_1610476_18 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 491.0
YYD2_k127_1610476_19 N-terminal TM domain of oligopeptide transport permease C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 467.0
YYD2_k127_1610476_2 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 1.787e-237 750.0
YYD2_k127_1610476_20 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 470.0
YYD2_k127_1610476_21 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 464.0
YYD2_k127_1610476_22 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 455.0
YYD2_k127_1610476_23 Binding-protein-dependent transport system inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 454.0
YYD2_k127_1610476_24 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 439.0
YYD2_k127_1610476_25 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007198 421.0
YYD2_k127_1610476_26 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 398.0
YYD2_k127_1610476_27 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 396.0
YYD2_k127_1610476_28 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 375.0
YYD2_k127_1610476_29 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 369.0
YYD2_k127_1610476_3 Belongs to the TPP enzyme family K01652 - 2.2.1.6 2.058e-229 723.0
YYD2_k127_1610476_30 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 352.0
YYD2_k127_1610476_31 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 345.0
YYD2_k127_1610476_32 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 321.0
YYD2_k127_1610476_33 Phosphoribosyl transferase domain K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 308.0
YYD2_k127_1610476_34 Belongs to the hyi family K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 286.0
YYD2_k127_1610476_35 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000005184 257.0
YYD2_k127_1610476_36 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000779 256.0
YYD2_k127_1610476_37 KR domain K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000002335 250.0
YYD2_k127_1610476_38 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000004648 224.0
YYD2_k127_1610476_39 COG1335 Amidases related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000002304 219.0
YYD2_k127_1610476_4 Bacterial extracellular solute-binding protein K02027 - - 2.885e-222 696.0
YYD2_k127_1610476_40 - - - - 0.00000000000000000000000000000000000000000000000000000002239 212.0
YYD2_k127_1610476_41 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000983 203.0
YYD2_k127_1610476_42 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000005527 196.0
YYD2_k127_1610476_43 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000001407 186.0
YYD2_k127_1610476_44 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000002257 166.0
YYD2_k127_1610476_45 Putative AphA-like transcriptional regulator - - - 0.00000000000000000000000000000000000000001497 159.0
YYD2_k127_1610476_46 6-phosphogluconate dehydrogenase, NAD-binding K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000001759 162.0
YYD2_k127_1610476_47 response to cobalt ion - - - 0.000001493 56.0
YYD2_k127_1610476_48 Tetratricopeptide TPR_2 repeat protein - - - 0.0002299 47.0
YYD2_k127_1610476_5 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 1.651e-199 632.0
YYD2_k127_1610476_6 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 1.418e-198 625.0
YYD2_k127_1610476_7 Extracellular solute-binding protein, family 5 middle family protein K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 614.0
YYD2_k127_1610476_8 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007233 603.0
YYD2_k127_1610476_9 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 586.0
YYD2_k127_1632391_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1382.0
YYD2_k127_1632391_1 signal transduction histidine kinase K13587 - 2.7.13.3 5.398e-249 793.0
YYD2_k127_1632391_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 304.0
YYD2_k127_1632391_11 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000001379 230.0
YYD2_k127_1632391_12 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000005134 207.0
YYD2_k127_1632391_13 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.000000000000000000000000000000000000000000163 170.0
YYD2_k127_1632391_14 ankyrin repeat K15503 - - 0.00000000000000000000000000000000000001111 158.0
YYD2_k127_1632391_15 NfeD-like C-terminal, partner-binding K07340 - - 0.00000000000000000000000000000000000003621 147.0
YYD2_k127_1632391_16 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000402 151.0
YYD2_k127_1632391_17 Protein of unknown function (DUF3305) - - - 0.0000000000000000000000000000000331 132.0
YYD2_k127_1632391_18 Protein of unknown function (DUF1153) - - - 0.00000000000000000000000000007311 119.0
YYD2_k127_1632391_19 electron transfer activity K02977,K06927,K08738,K08770 GO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244 6.3.1.14 0.000000000000000000000000001974 119.0
YYD2_k127_1632391_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 578.0
YYD2_k127_1632391_20 signal transduction histidine kinase K13588 - - 0.00000000000000000000000105 112.0
YYD2_k127_1632391_21 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000444 98.0
YYD2_k127_1632391_22 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000001448 86.0
YYD2_k127_1632391_23 Protein of unknown function (DUF3553) - - - 0.0000000000000002294 84.0
YYD2_k127_1632391_24 Protein of unknown function (DUF3306) - - - 0.0000000000000006677 87.0
YYD2_k127_1632391_25 Membrane transport protein MerF K19058 - - 0.000000000433 63.0
YYD2_k127_1632391_26 Thioredoxin - - - 0.00006094 49.0
YYD2_k127_1632391_3 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006508 419.0
YYD2_k127_1632391_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 407.0
YYD2_k127_1632391_5 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 409.0
YYD2_k127_1632391_6 COG0437 Fe-S-cluster-containing hydrogenase components 1 K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 390.0
YYD2_k127_1632391_7 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 372.0
YYD2_k127_1632391_8 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 347.0
YYD2_k127_1632391_9 WD domain, G-beta repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 342.0
YYD2_k127_1660820_0 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 394.0
YYD2_k127_1660820_1 transcription activator, effector binding K13652 - - 0.0000000000000000000000000000000000000000000000000008758 192.0
YYD2_k127_1660820_2 - - - - 0.00000000000000002529 83.0
YYD2_k127_1695158_0 NfeD-like C-terminal, partner-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 454.0
YYD2_k127_1695158_1 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 353.0
YYD2_k127_1695158_2 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004077 277.0
YYD2_k127_1695158_3 thiamine-containing compound biosynthetic process K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002047 270.0
YYD2_k127_1695158_4 AAA domain - - - 0.000000000005849 67.0
YYD2_k127_1727790_0 Tripartite tricarboxylate transporter TctA family - - - 8.312e-204 653.0
YYD2_k127_1727790_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 2.238e-195 626.0
YYD2_k127_1727790_10 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000001119 115.0
YYD2_k127_1727790_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 505.0
YYD2_k127_1727790_3 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 495.0
YYD2_k127_1727790_4 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 399.0
YYD2_k127_1727790_5 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 357.0
YYD2_k127_1727790_6 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 353.0
YYD2_k127_1727790_7 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001537 263.0
YYD2_k127_1727790_8 - - - - 0.00000000000000000000000000000000000002884 151.0
YYD2_k127_1727790_9 Belongs to the HpcH HpaI aldolase family K00979,K02510 - 2.7.7.38,4.1.2.52 0.0000000000000000000000000000000000002464 147.0
YYD2_k127_1730216_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.102e-226 708.0
YYD2_k127_1730216_1 transhydrogenase subunit alpha K00324 GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 481.0
YYD2_k127_1730216_10 Protein of unknown function (DUF465) - - - 0.00000000000000000002118 93.0
YYD2_k127_1730216_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004244 443.0
YYD2_k127_1730216_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 318.0
YYD2_k127_1730216_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000001719 235.0
YYD2_k127_1730216_5 AIR carboxylase K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000006306 224.0
YYD2_k127_1730216_6 COQ9 K18587 - - 0.000000000000000000000000000000000000000000000000000000000000009427 222.0
YYD2_k127_1730216_7 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000000000000000002905 154.0
YYD2_k127_1730216_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000007665 111.0
YYD2_k127_1754739_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 7.488e-304 949.0
YYD2_k127_1754739_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 3.893e-236 734.0
YYD2_k127_1754739_10 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009296 363.0
YYD2_k127_1754739_11 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 358.0
YYD2_k127_1754739_12 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009931 353.0
YYD2_k127_1754739_13 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 338.0
YYD2_k127_1754739_14 protein conserved in bacteria K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 302.0
YYD2_k127_1754739_15 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003335 251.0
YYD2_k127_1754739_16 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000008631 235.0
YYD2_k127_1754739_17 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000002882 214.0
YYD2_k127_1754739_18 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000006192 196.0
YYD2_k127_1754739_19 COG2825 Outer membrane protein - - - 0.000000000000000000000000000002296 128.0
YYD2_k127_1754739_2 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 509.0
YYD2_k127_1754739_3 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 497.0
YYD2_k127_1754739_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 428.0
YYD2_k127_1754739_5 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 424.0
YYD2_k127_1754739_6 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 409.0
YYD2_k127_1754739_7 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 406.0
YYD2_k127_1754739_8 COG2931, RTX toxins and related Ca2 -binding proteins K01127 - 3.1.4.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 409.0
YYD2_k127_1754739_9 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009026 385.0
YYD2_k127_1771435_0 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005139 331.0
YYD2_k127_1771435_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000002241 254.0
YYD2_k127_180003_0 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 419.0
YYD2_k127_180003_1 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 362.0
YYD2_k127_180003_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003619 255.0
YYD2_k127_180003_3 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002269 248.0
YYD2_k127_180003_4 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000002239 234.0
YYD2_k127_180003_5 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000004031 231.0
YYD2_k127_1801957_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 563.0
YYD2_k127_1801957_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 537.0
YYD2_k127_1801957_10 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.000000000001517 81.0
YYD2_k127_1801957_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 465.0
YYD2_k127_1801957_3 Adenylylsulphate kinase K00955 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 453.0
YYD2_k127_1801957_4 sulfate adenylyltransferase (ATP) activity K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 371.0
YYD2_k127_1801957_5 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003363 344.0
YYD2_k127_1801957_6 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000175 274.0
YYD2_k127_1801957_7 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005119 282.0
YYD2_k127_1801957_8 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000003435 239.0
YYD2_k127_1801957_9 COG3267 Type II secretory pathway, component ExeA K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000006611 151.0
YYD2_k127_1811677_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1422.0
YYD2_k127_1811677_1 SNARE associated Golgi protein - - - 0.000000000000000000003165 102.0
YYD2_k127_1811677_2 Exopolysaccharide synthesis ExoD - - - 0.00000000000000000008934 100.0
YYD2_k127_1849903_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.545e-217 681.0
YYD2_k127_1849903_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009638 572.0
YYD2_k127_1849903_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 561.0
YYD2_k127_1849903_3 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 559.0
YYD2_k127_1849903_4 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001159 244.0
YYD2_k127_1849903_5 COG4665 TRAP-type mannitol chloroaromatic compound transport system small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000002571 234.0
YYD2_k127_1849903_6 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K01769 - 4.6.1.1,4.6.1.2 0.00000000004796 67.0
YYD2_k127_1849903_7 COG2346, Truncated hemoglobins K03406,K06886 GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008941,GO:0009056,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016491,GO:0016705,GO:0016708,GO:0017144,GO:0019825,GO:0020012,GO:0020037,GO:0030682,GO:0034641,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043207,GO:0044237,GO:0044248,GO:0044270,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046210,GO:0046906,GO:0048037,GO:0050896,GO:0051213,GO:0051410,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:0075136,GO:0097159,GO:0098754,GO:1901363,GO:1901698,GO:2001057 - 0.00000000005594 63.0
YYD2_k127_1873878_0 This protein is involved in the repair of mismatches in DNA K03555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 304.0
YYD2_k127_1873878_1 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008273 269.0
YYD2_k127_1904758_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 1.709e-307 964.0
YYD2_k127_1904758_1 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA - - - 4.591e-288 903.0
YYD2_k127_1904758_10 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 358.0
YYD2_k127_1904758_11 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 354.0
YYD2_k127_1904758_12 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001688 278.0
YYD2_k127_1904758_13 Bacterial periplasmic substrate-binding proteins K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006866 290.0
YYD2_k127_1904758_14 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000007501 256.0
YYD2_k127_1904758_15 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003947 245.0
YYD2_k127_1904758_16 COG0765 ABC-type amino acid transport system, permease component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000009411 241.0
YYD2_k127_1904758_17 Belongs to the thiolase family K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000001861 214.0
YYD2_k127_1904758_18 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000009115 179.0
YYD2_k127_1904758_2 esterase lipase - - - 9.542e-221 735.0
YYD2_k127_1904758_3 proline dipeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 582.0
YYD2_k127_1904758_4 Binding-protein-dependent transport system inner membrane component K02053,K02054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006537 598.0
YYD2_k127_1904758_5 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 542.0
YYD2_k127_1904758_6 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 547.0
YYD2_k127_1904758_7 AMP-binding enzyme K02182 - 6.2.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 509.0
YYD2_k127_1904758_8 fad dependent oxidoreductase K09471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 467.0
YYD2_k127_1904758_9 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009938 419.0
YYD2_k127_1917281_0 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1009.0
YYD2_k127_1917281_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 7e-239 749.0
YYD2_k127_1917281_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000004637 174.0
YYD2_k127_1917281_11 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000001471 122.0
YYD2_k127_1917281_12 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.000025 48.0
YYD2_k127_1917281_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 3.236e-226 704.0
YYD2_k127_1917281_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 555.0
YYD2_k127_1917281_4 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 535.0
YYD2_k127_1917281_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006876 324.0
YYD2_k127_1917281_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 313.0
YYD2_k127_1917281_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008238 303.0
YYD2_k127_1917281_8 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002887 287.0
YYD2_k127_1917281_9 Belongs to the complex I subunit 6 family K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001194 273.0
YYD2_k127_1917961_0 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 7.324e-275 857.0
YYD2_k127_1917961_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 5.231e-249 791.0
YYD2_k127_1917961_10 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009767 278.0
YYD2_k127_1917961_11 Sulfotransferase domain K01014 - 2.8.2.1 0.000000000000000000000000000000000000000000000000000000000000000001205 237.0
YYD2_k127_1917961_12 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000002242 230.0
YYD2_k127_1917961_13 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000001177 206.0
YYD2_k127_1917961_14 glycosyl transferase - - - 0.0000000000000000000000001262 110.0
YYD2_k127_1917961_15 - - - - 0.0000000000000000000000002314 116.0
YYD2_k127_1917961_16 Gram-negative porin K08720 - - 0.0000000002458 66.0
YYD2_k127_1917961_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 1.442e-195 619.0
YYD2_k127_1917961_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 495.0
YYD2_k127_1917961_4 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 469.0
YYD2_k127_1917961_5 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005125 381.0
YYD2_k127_1917961_6 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 365.0
YYD2_k127_1917961_7 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 315.0
YYD2_k127_1917961_8 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 306.0
YYD2_k127_1917961_9 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 304.0
YYD2_k127_1924649_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1033.0
YYD2_k127_1924649_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 2.789e-319 996.0
YYD2_k127_1924649_10 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000006705 228.0
YYD2_k127_1924649_11 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000003531 134.0
YYD2_k127_1924649_12 GYD domain - - - 0.000000000000000000000000000001884 123.0
YYD2_k127_1924649_13 Protein of unknown function - - - 0.00000000000000000006287 94.0
YYD2_k127_1924649_14 Tetratricopeptide repeat protein - - - 0.0007335 51.0
YYD2_k127_1924649_2 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.868e-207 680.0
YYD2_k127_1924649_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007445 501.0
YYD2_k127_1924649_4 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004231 471.0
YYD2_k127_1924649_5 Transcriptional regulator, AraC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 415.0
YYD2_k127_1924649_6 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 407.0
YYD2_k127_1924649_7 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 325.0
YYD2_k127_1924649_8 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 323.0
YYD2_k127_1924649_9 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007916 310.0
YYD2_k127_1937889_0 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 0.0 1116.0
YYD2_k127_1937889_1 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 3.182e-306 955.0
YYD2_k127_1937889_10 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 431.0
YYD2_k127_1937889_11 ABC transporter, ATP-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 422.0
YYD2_k127_1937889_12 Ornithine cyclodeaminase/mu-crystallin family K01750,K19743 - 1.5.1.1,4.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 411.0
YYD2_k127_1937889_13 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 405.0
YYD2_k127_1937889_14 Sarcosine oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 394.0
YYD2_k127_1937889_15 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 374.0
YYD2_k127_1937889_16 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 333.0
YYD2_k127_1937889_17 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 316.0
YYD2_k127_1937889_18 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 301.0
YYD2_k127_1937889_19 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001405 280.0
YYD2_k127_1937889_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.921e-298 929.0
YYD2_k127_1937889_20 OstA-like protein K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000008189 247.0
YYD2_k127_1937889_21 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
YYD2_k127_1937889_22 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000006421 233.0
YYD2_k127_1937889_23 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000001278 228.0
YYD2_k127_1937889_24 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000000000000000000001198 216.0
YYD2_k127_1937889_25 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.0000000000000000000000000000000000000000000000000000000002899 209.0
YYD2_k127_1937889_26 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000000000000000000000001538 201.0
YYD2_k127_1937889_27 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000002768 180.0
YYD2_k127_1937889_28 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000007688 156.0
YYD2_k127_1937889_29 Phage integrase family - - - 0.000000000000000000000000000000000000003567 153.0
YYD2_k127_1937889_3 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 8.098e-237 741.0
YYD2_k127_1937889_30 YHS domain protein - - - 0.000000000000000000000000000000000006507 141.0
YYD2_k127_1937889_31 Protein of unknown function (FYDLN_acid) - - - 0.000000000000000000000006972 104.0
YYD2_k127_1937889_32 2'-5' RNA ligase superfamily - - - 0.0000000000000000001564 95.0
YYD2_k127_1937889_33 Pfam:DUF1049 - - - 0.00000000002218 69.0
YYD2_k127_1937889_34 - K01419 - 3.4.25.2 0.000000001218 67.0
YYD2_k127_1937889_35 Protein of unknown function (DUF1150) - - - 0.00000002535 62.0
YYD2_k127_1937889_36 Phage integrase family - - - 0.000786 45.0
YYD2_k127_1937889_4 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 1.247e-223 698.0
YYD2_k127_1937889_5 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 6.612e-220 702.0
YYD2_k127_1937889_6 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 602.0
YYD2_k127_1937889_7 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 568.0
YYD2_k127_1937889_8 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 546.0
YYD2_k127_1937889_9 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 471.0
YYD2_k127_196457_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 388.0
YYD2_k127_196457_1 Phage major capsid protein E - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001226 266.0
YYD2_k127_196457_2 RDD family - - - 0.000000000000000000000000000006989 121.0
YYD2_k127_196457_3 YGGT family K02221 - - 0.00000000000000000000000000006048 128.0
YYD2_k127_196457_4 tetratricopeptide repeat - - - 0.000000000000000000278 96.0
YYD2_k127_196457_5 Belongs to the UPF0235 family K09131 - - 0.000000000000000006451 93.0
YYD2_k127_1974679_0 Tripartite tricarboxylate transporter TctA family K07793 - - 2.013e-230 723.0
YYD2_k127_1974679_1 MmgE/PrpD family - - - 5.553e-196 644.0
YYD2_k127_1974679_10 PFAM Mandelate racemase muconate lactonizing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 338.0
YYD2_k127_1974679_11 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 334.0
YYD2_k127_1974679_12 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005197 329.0
YYD2_k127_1974679_13 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 315.0
YYD2_k127_1974679_14 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001377 276.0
YYD2_k127_1974679_15 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002951 250.0
YYD2_k127_1974679_16 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000002449 191.0
YYD2_k127_1974679_17 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000272 156.0
YYD2_k127_1974679_18 MafB19-like deaminase - - - 0.0000000000000000000003682 110.0
YYD2_k127_1974679_19 Tripartite tricarboxylate transporter TctB family - - - 0.000000000001867 73.0
YYD2_k127_1974679_2 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 560.0
YYD2_k127_1974679_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 446.0
YYD2_k127_1974679_4 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 439.0
YYD2_k127_1974679_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 418.0
YYD2_k127_1974679_6 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 393.0
YYD2_k127_1974679_7 ABC transporter K02049,K15555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 383.0
YYD2_k127_1974679_8 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01856 - 5.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 372.0
YYD2_k127_1974679_9 fumarylacetoacetate (FAA) hydrolase K16165 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0008948,GO:0016787,GO:0016822,GO:0016823,GO:0016829,GO:0016830,GO:0016831,GO:0018773,GO:0031974,GO:0031981,GO:0034545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013 3.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 359.0
YYD2_k127_1981864_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1440.0
YYD2_k127_1981864_1 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1334.0
YYD2_k127_1981864_10 glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 518.0
YYD2_k127_1981864_11 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 526.0
YYD2_k127_1981864_12 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 483.0
YYD2_k127_1981864_13 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000903 476.0
YYD2_k127_1981864_14 COG0437 Fe-S-cluster-containing hydrogenase components 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007193 423.0
YYD2_k127_1981864_15 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K19745 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008402 426.0
YYD2_k127_1981864_16 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 420.0
YYD2_k127_1981864_17 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 385.0
YYD2_k127_1981864_18 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 369.0
YYD2_k127_1981864_19 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 349.0
YYD2_k127_1981864_2 Asparagine synthase K01953 - 6.3.5.4 1.336e-245 776.0
YYD2_k127_1981864_20 DMSO reductase anchor subunit K21309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007937 338.0
YYD2_k127_1981864_21 Belongs to the GcvT family K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 332.0
YYD2_k127_1981864_22 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 334.0
YYD2_k127_1981864_23 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 318.0
YYD2_k127_1981864_24 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 317.0
YYD2_k127_1981864_25 Peptidase family S49 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 317.0
YYD2_k127_1981864_26 PFAM helix-turn-helix- domain containing protein AraC type K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 308.0
YYD2_k127_1981864_27 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 300.0
YYD2_k127_1981864_28 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001938 275.0
YYD2_k127_1981864_29 COG0438 Glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002894 272.0
YYD2_k127_1981864_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 4.763e-242 758.0
YYD2_k127_1981864_30 Methyltransferase small domain - - - 0.00000000000000000000000000000000000000000000000000000000000001252 224.0
YYD2_k127_1981864_31 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000007639 212.0
YYD2_k127_1981864_32 Transcriptional regulator K07734 - - 0.0000000000000000000000000000000000000000000000000000000001521 210.0
YYD2_k127_1981864_33 endonuclease III K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000000005005 190.0
YYD2_k127_1981864_34 Scavenger mRNA decapping enzyme C-term binding - - - 0.00000000000000000000000000000000000000000000001072 174.0
YYD2_k127_1981864_35 COG2076 Membrane transporters of cations and cationic drugs K11741 - - 0.0000000000000000000000000000000000000000003275 161.0
YYD2_k127_1981864_36 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001285 166.0
YYD2_k127_1981864_37 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000004431 160.0
YYD2_k127_1981864_38 Ankyrin repeat - - - 0.00000000000000000000000000000000000000001031 159.0
YYD2_k127_1981864_39 Belongs to the phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000002775 162.0
YYD2_k127_1981864_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.123e-227 728.0
YYD2_k127_1981864_40 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000006102 155.0
YYD2_k127_1981864_41 Uncharacterized lipoprotein - - - 0.0000000000000000000000000000000000000258 151.0
YYD2_k127_1981864_42 Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain K08738 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045155,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070013,GO:0070469,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 - 0.0000000000000000000000000000003277 128.0
YYD2_k127_1981864_43 - - - - 0.000000000000000000000000881 111.0
YYD2_k127_1981864_44 cytochrome K08738 - - 0.00000000000000000002127 98.0
YYD2_k127_1981864_45 Putative prokaryotic signal transducing protein - - - 0.00000000000000002572 85.0
YYD2_k127_1981864_46 Cytochrome C556 - - - 0.0000000000203 72.0
YYD2_k127_1981864_47 - - - - 0.0000000001011 66.0
YYD2_k127_1981864_48 DMSO reductase anchor subunit K21309 - - 0.00000000134 61.0
YYD2_k127_1981864_49 conserved small protein - - - 0.00000695 52.0
YYD2_k127_1981864_5 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 5.431e-212 665.0
YYD2_k127_1981864_6 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.404e-195 618.0
YYD2_k127_1981864_7 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 602.0
YYD2_k127_1981864_8 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006327 592.0
YYD2_k127_1981864_9 Isocitrate/isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 524.0
YYD2_k127_1988373_0 orn lys arg decarboxylase K01583 - 4.1.1.19 0.0 1167.0
YYD2_k127_1988373_1 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030,K10001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004921 258.0
YYD2_k127_1988373_2 Catalyzes the sodium-dependent transport of glutamate K03312 - - 0.00000000000000000000000000006592 119.0
YYD2_k127_199632_0 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006851 388.0
YYD2_k127_199632_1 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 394.0
YYD2_k127_199632_2 - - - - 0.00000886 48.0
YYD2_k127_2005936_0 N-6 DNA Methylase - - - 2.912e-255 806.0
YYD2_k127_2005936_1 Protein of unknown function (DUF3800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 326.0
YYD2_k127_2005936_2 Protein of unknown function (DUF3800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000012 291.0
YYD2_k127_2005936_3 restriction endonuclease K07448 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003216 263.0
YYD2_k127_2005936_4 EamA-like transporter family - - - 0.000001078 52.0
YYD2_k127_2005936_5 Protein of unknown function (DUF3800) - - - 0.000005166 48.0
YYD2_k127_2040818_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 486.0
YYD2_k127_2040818_1 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007558 479.0
YYD2_k127_2040818_10 Domain of unknown function (DUF1127) - - - 0.00000004968 57.0
YYD2_k127_2040818_2 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 396.0
YYD2_k127_2040818_3 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 376.0
YYD2_k127_2040818_4 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 366.0
YYD2_k127_2040818_5 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 319.0
YYD2_k127_2040818_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 295.0
YYD2_k127_2040818_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000007681 228.0
YYD2_k127_2040818_8 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000001315 111.0
YYD2_k127_2040818_9 helicase activity - - - 0.00000000000000006777 90.0
YYD2_k127_2112371_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1521.0
YYD2_k127_2112371_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1442.0
YYD2_k127_2112371_10 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 477.0
YYD2_k127_2112371_11 Chalcone and stilbene synthases, C-terminal domain K16167 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004963 417.0
YYD2_k127_2112371_12 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 410.0
YYD2_k127_2112371_13 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 416.0
YYD2_k127_2112371_14 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 380.0
YYD2_k127_2112371_15 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008426 338.0
YYD2_k127_2112371_16 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 344.0
YYD2_k127_2112371_17 Belongs to the HpcH HpaI aldolase family K01630,K02510 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0008150,GO:0008152,GO:0016829,GO:0016830,GO:0016832,GO:0044238,GO:0044424,GO:0044464,GO:0071704 4.1.2.20,4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 324.0
YYD2_k127_2112371_18 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 322.0
YYD2_k127_2112371_19 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 316.0
YYD2_k127_2112371_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1223.0
YYD2_k127_2112371_20 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 319.0
YYD2_k127_2112371_21 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01029,K01032 GO:0001666,GO:0006950,GO:0008150,GO:0009628,GO:0036293,GO:0050896,GO:0070482 2.8.3.5,2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 314.0
YYD2_k127_2112371_22 Coenzyme A transferase K01031 - 2.8.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 307.0
YYD2_k127_2112371_23 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 306.0
YYD2_k127_2112371_24 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002368 280.0
YYD2_k127_2112371_25 dithiol-disulfide isomerase involved in polyketide biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000001765 239.0
YYD2_k127_2112371_26 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000004703 239.0
YYD2_k127_2112371_27 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000001044 235.0
YYD2_k127_2112371_28 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001548 229.0
YYD2_k127_2112371_29 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000000000000002833 220.0
YYD2_k127_2112371_3 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 2.77e-300 935.0
YYD2_k127_2112371_30 protein-S-isoprenylcysteine methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000007599 221.0
YYD2_k127_2112371_31 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.0000000000000000000000000000000000000000000000000000000007659 203.0
YYD2_k127_2112371_32 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000000000000000000000001323 207.0
YYD2_k127_2112371_33 Protein of unknown function (DUF1428) - - - 0.0000000000000000000000000000000000000000000000000000002063 198.0
YYD2_k127_2112371_34 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000004864 202.0
YYD2_k127_2112371_35 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.000000000000000000000000000000000000000000000000000001505 198.0
YYD2_k127_2112371_36 ubiquinone menaquinone biosynthesis methyltransferase - - - 0.00000000000000000000000000000000000000000000000000005952 196.0
YYD2_k127_2112371_37 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000000000000000009484 186.0
YYD2_k127_2112371_38 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000002297 194.0
YYD2_k127_2112371_39 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000003805 186.0
YYD2_k127_2112371_4 AMP-binding enzyme C-terminal domain K02182 - 6.2.1.48 2.292e-235 745.0
YYD2_k127_2112371_40 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000002853 170.0
YYD2_k127_2112371_41 GYD domain - - - 0.0000000000000000000000000000000000000007284 154.0
YYD2_k127_2112371_43 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000001069 117.0
YYD2_k127_2112371_44 Endoribonuclease L-PSP - - - 0.00000000000000000000000008431 116.0
YYD2_k127_2112371_45 PFAM thioesterase superfamily protein K07107 - - 0.000000000000000000000000178 120.0
YYD2_k127_2112371_46 - - - - 0.000000000000000000006961 97.0
YYD2_k127_2112371_47 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000002015 94.0
YYD2_k127_2112371_48 surface antigen - - - 0.0000000000001566 77.0
YYD2_k127_2112371_49 Tellurite resistance protein TerB - - - 0.0000000000003793 78.0
YYD2_k127_2112371_5 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 5.603e-194 614.0
YYD2_k127_2112371_50 - - - - 0.00000003399 60.0
YYD2_k127_2112371_51 - - - - 0.0000006531 55.0
YYD2_k127_2112371_52 Resolvase, N terminal domain - - - 0.00002172 53.0
YYD2_k127_2112371_53 PilZ domain - - - 0.0001579 50.0
YYD2_k127_2112371_54 - - - - 0.0004815 49.0
YYD2_k127_2112371_6 tRNA (guanine-N7-)-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008731 541.0
YYD2_k127_2112371_7 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 509.0
YYD2_k127_2112371_8 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003592 512.0
YYD2_k127_2112371_9 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 484.0
YYD2_k127_2121095_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 4.185e-214 677.0
YYD2_k127_2121095_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636 535.0
YYD2_k127_2129671_0 N-methylhydantoinase B acetone carboxylase, alpha subunit K01474 - 3.5.2.14 1.174e-283 880.0
YYD2_k127_2129671_1 N-methylhydantoinase A acetone carboxylase, beta subunit K01473 - 3.5.2.14 7.739e-279 872.0
YYD2_k127_2129671_2 FAD dependent oxidoreductase K00244 - 1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 574.0
YYD2_k127_2129671_3 Isochorismatase family K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 286.0
YYD2_k127_2192317_0 Bacterial extracellular solute-binding protein K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004278 386.0
YYD2_k127_2192317_1 ATPases associated with a variety of cellular activities K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 348.0
YYD2_k127_2192317_2 ABC-type nitrate sulfonate bicarbonate transport system, permease component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 342.0
YYD2_k127_2192317_3 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 319.0
YYD2_k127_2192317_4 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002657 287.0
YYD2_k127_2192317_5 HIUase/Transthyretin family K07127 - 3.5.2.17 0.00000000000000000000000000006864 130.0
YYD2_k127_2209898_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 324.0
YYD2_k127_2209898_1 TIGRFAM type I secretion membrane fusion protein, HlyD family K12542 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002749 274.0
YYD2_k127_2209898_2 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004977 245.0
YYD2_k127_2209898_3 Bacterial protein of unknown function (DUF899) - - - 0.0000000000000000000000000000000000000002075 153.0
YYD2_k127_2209898_4 Ribbon-helix-helix domain - - - 0.0000000000000000006871 88.0
YYD2_k127_2209898_5 localization factor protein PodJ K07126,K13582 - - 0.0000000000000001981 84.0
YYD2_k127_2262280_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 577.0
YYD2_k127_2262280_1 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 414.0
YYD2_k127_2262280_2 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 328.0
YYD2_k127_2262280_3 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007362 325.0
YYD2_k127_2262280_4 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000322 287.0
YYD2_k127_2262280_5 transcriptional regulator K13643 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005809 247.0
YYD2_k127_2262280_6 Protein of unknown function - - - 0.0000000000000000000000000000000000000000000000000000003424 199.0
YYD2_k127_2265927_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 6.442e-282 872.0
YYD2_k127_2265927_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 2.543e-251 782.0
YYD2_k127_2265927_10 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001821 253.0
YYD2_k127_2265927_11 - - - - 0.000000000000000000000000000000000000000000000005194 176.0
YYD2_k127_2265927_12 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000000000000000001494 175.0
YYD2_k127_2265927_13 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K03977 - - 0.00000000000000000000000000000000000000008333 153.0
YYD2_k127_2265927_14 FR47-like protein - - - 0.000000000000000000000000000000000001333 145.0
YYD2_k127_2265927_15 Protein of unknown function (DUF2794) - - - 0.0000000000000000000002593 102.0
YYD2_k127_2265927_16 - - - - 0.00000000000000000003178 93.0
YYD2_k127_2265927_17 ABC transporter substrate binding protein - - - 0.0000000000001597 72.0
YYD2_k127_2265927_2 RESPONSE REGULATOR receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005876 569.0
YYD2_k127_2265927_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005507 490.0
YYD2_k127_2265927_4 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic K01886 - 6.1.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005241 452.0
YYD2_k127_2265927_5 COG1520 FOG WD40-like repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 431.0
YYD2_k127_2265927_6 Bacterial protein of unknown function (DUF899) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 404.0
YYD2_k127_2265927_7 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 386.0
YYD2_k127_2265927_8 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 367.0
YYD2_k127_2265927_9 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000003453 258.0
YYD2_k127_2272379_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1133.0
YYD2_k127_2272379_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 2.884e-233 745.0
YYD2_k127_2272379_10 membrane-anchored protein conserved in bacteria - - - 0.00000000028 65.0
YYD2_k127_2272379_11 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000001175 55.0
YYD2_k127_2272379_2 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 444.0
YYD2_k127_2272379_3 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 369.0
YYD2_k127_2272379_4 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000581 291.0
YYD2_k127_2272379_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000206 279.0
YYD2_k127_2272379_6 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001532 251.0
YYD2_k127_2272379_7 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000005396 173.0
YYD2_k127_2272379_8 Protein of unknown function (DUF983) - - - 0.000000000000000000000000000000000009149 139.0
YYD2_k127_2272379_9 Adenylate cyclase - - - 0.00000000000000000111 87.0
YYD2_k127_2283801_0 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 3.499e-243 765.0
YYD2_k127_2283801_1 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000747 467.0
YYD2_k127_2283801_10 Subtilase family - - - 0.000000000000000000000000000000000009236 150.0
YYD2_k127_2283801_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006973 449.0
YYD2_k127_2283801_3 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 415.0
YYD2_k127_2283801_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 422.0
YYD2_k127_2283801_5 hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 402.0
YYD2_k127_2283801_6 asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 332.0
YYD2_k127_2283801_7 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 315.0
YYD2_k127_2283801_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000015 231.0
YYD2_k127_2283801_9 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000005239 181.0
YYD2_k127_229031_0 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 5.053e-200 634.0
YYD2_k127_229031_1 Precorrin-3B K05934,K13541 - 2.1.1.131,3.7.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 604.0
YYD2_k127_229031_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000001769 175.0
YYD2_k127_229031_11 Cobalamin biosynthesis protein CobN and related Mg-chelatases K02230 - 6.6.1.2 0.0000000000000000000000000002706 117.0
YYD2_k127_229031_2 Precorrin-6Y C5,15-methyltransferase K00595 - 2.1.1.132 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004988 475.0
YYD2_k127_229031_3 CbiX - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 424.0
YYD2_k127_229031_4 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 360.0
YYD2_k127_229031_5 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005766 356.0
YYD2_k127_229031_6 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001253 286.0
YYD2_k127_229031_7 Precorrin-2 K03394 - 2.1.1.130,2.1.1.151 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002065 280.0
YYD2_k127_229031_8 PFAM Precorrin-8X methylmutase CbiC CobH K06042 - 5.4.99.60,5.4.99.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000009762 265.0
YYD2_k127_229031_9 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000000003421 193.0
YYD2_k127_2293808_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.915e-309 954.0
YYD2_k127_2293808_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 1.396e-249 786.0
YYD2_k127_2293808_10 COG1994 Zn-dependent proteases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009403 257.0
YYD2_k127_2293808_11 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000002218 226.0
YYD2_k127_2293808_12 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000003291 167.0
YYD2_k127_2293808_13 - - - - 0.000000000000000000000000000000000000001894 158.0
YYD2_k127_2293808_14 Belongs to the HesB IscA family K15724 - - 0.0000000000000000000000000000000000002524 149.0
YYD2_k127_2293808_15 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000003807 135.0
YYD2_k127_2293808_16 Sporulation related domain - - - 0.00000000000000000000000000000001415 140.0
YYD2_k127_2293808_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000002525 109.0
YYD2_k127_2293808_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000009324 87.0
YYD2_k127_2293808_2 inner membrane component K02011 - - 3.359e-207 658.0
YYD2_k127_2293808_3 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005485 588.0
YYD2_k127_2293808_4 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 538.0
YYD2_k127_2293808_5 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 478.0
YYD2_k127_2293808_6 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 404.0
YYD2_k127_2293808_7 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 387.0
YYD2_k127_2293808_8 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 355.0
YYD2_k127_2293808_9 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007411 330.0
YYD2_k127_2317164_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 599.0
YYD2_k127_2317164_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007971 556.0
YYD2_k127_2317164_2 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 334.0
YYD2_k127_2317164_3 Uncharacterised protein family (UPF0262) - - - 0.00000000000000000000000000000000000000000000000000000000000000000002746 236.0
YYD2_k127_2317164_4 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000001781 191.0
YYD2_k127_2317164_5 Protein of unknown function (DUF2948) - - - 0.0000000000000000000000000000000000109 147.0
YYD2_k127_2317164_6 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000764 121.0
YYD2_k127_2336815_0 Belongs to the aldehyde dehydrogenase family - - - 3.43e-245 765.0
YYD2_k127_2336815_1 Penicillin amidase K01434 - 3.5.1.11 3.358e-227 728.0
YYD2_k127_2336815_10 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 444.0
YYD2_k127_2336815_11 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009793 391.0
YYD2_k127_2336815_12 Enoyl-CoA hydratase/isomerase K01692,K05605 - 3.1.2.4,4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 387.0
YYD2_k127_2336815_13 alpha/beta hydrolase fold K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008013 351.0
YYD2_k127_2336815_14 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 342.0
YYD2_k127_2336815_15 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007774 276.0
YYD2_k127_2336815_16 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001236 247.0
YYD2_k127_2336815_17 BioY family K03523 - - 0.0000000000000000000000000000000000000000000000000000000000000008865 224.0
YYD2_k127_2336815_18 Class II aldolase K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000006938 203.0
YYD2_k127_2336815_19 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000002331 207.0
YYD2_k127_2336815_2 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 2.532e-222 694.0
YYD2_k127_2336815_20 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000002262 193.0
YYD2_k127_2336815_21 COG1846 Transcriptional regulators - - - 0.0000000000000000000000000000000000000000000000000002532 189.0
YYD2_k127_2336815_22 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000000000007331 188.0
YYD2_k127_2336815_23 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000001693 159.0
YYD2_k127_2336815_24 thioesterase K01075 - 3.1.2.23 0.00000000000000000000000000000000000114 143.0
YYD2_k127_2336815_25 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.0000000000000000000000000000000001985 133.0
YYD2_k127_2336815_26 RDD family - - - 0.00008035 51.0
YYD2_k127_2336815_3 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 3.107e-194 621.0
YYD2_k127_2336815_4 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007363 587.0
YYD2_k127_2336815_5 acyl-CoA transferases carnitine dehydratase K18702 - 2.8.3.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 577.0
YYD2_k127_2336815_6 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 514.0
YYD2_k127_2336815_7 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 482.0
YYD2_k127_2336815_8 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 475.0
YYD2_k127_2336815_9 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 470.0
YYD2_k127_2357035_0 GTP cyclohydrolase N terminal - - - 7.543e-214 671.0
YYD2_k127_2357035_1 Protein of unknown function (DUF1688) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 502.0
YYD2_k127_2357035_2 PFAM AAA ATPase central domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 317.0
YYD2_k127_2357035_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000004398 234.0
YYD2_k127_2357035_4 NlpE C-terminal OB domain - - - 0.0000000000000000000000000000000000000000000000000000000000001797 229.0
YYD2_k127_2389261_0 Efflux pump membrane transporter K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 560.0
YYD2_k127_2389261_1 Catalyzes the sodium-dependent transport of glutamate K03312 - - 0.000000000724 63.0
YYD2_k127_2415220_0 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 1.172e-203 652.0
YYD2_k127_2415220_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 1.811e-195 615.0
YYD2_k127_2415220_2 Cobaltochelatase CobS subunit N terminal K09882 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 564.0
YYD2_k127_2415220_3 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 490.0
YYD2_k127_2415220_4 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008091 342.0
YYD2_k127_2415220_5 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 327.0
YYD2_k127_2415220_6 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000001163 184.0
YYD2_k127_2415220_7 Molecular chaperone - - - 0.000000000000000000000000000000000000000000000007577 179.0
YYD2_k127_2441495_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 1.435e-204 642.0
YYD2_k127_2441495_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 448.0
YYD2_k127_2441495_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000001336 85.0
YYD2_k127_2448709_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 5.879e-289 908.0
YYD2_k127_2448709_1 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 9.325e-250 784.0
YYD2_k127_2448709_10 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 488.0
YYD2_k127_2448709_11 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 504.0
YYD2_k127_2448709_12 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 494.0
YYD2_k127_2448709_13 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 479.0
YYD2_k127_2448709_14 Iron-containing alcohol dehydrogenase K00043 - 1.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 448.0
YYD2_k127_2448709_15 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 441.0
YYD2_k127_2448709_16 ABC transporter K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 414.0
YYD2_k127_2448709_17 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007025 406.0
YYD2_k127_2448709_18 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 395.0
YYD2_k127_2448709_19 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 398.0
YYD2_k127_2448709_2 COG1960 Acyl-CoA dehydrogenases K20035 - - 1.253e-240 759.0
YYD2_k127_2448709_20 of ABC-type glycine betaine transport system K05845 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 389.0
YYD2_k127_2448709_21 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 399.0
YYD2_k127_2448709_22 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000705 382.0
YYD2_k127_2448709_23 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 387.0
YYD2_k127_2448709_24 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 367.0
YYD2_k127_2448709_25 Belongs to the DapA family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 349.0
YYD2_k127_2448709_26 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 361.0
YYD2_k127_2448709_27 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 314.0
YYD2_k127_2448709_28 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006993 313.0
YYD2_k127_2448709_29 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 310.0
YYD2_k127_2448709_3 Belongs to the aldehyde dehydrogenase family - - - 2.869e-198 630.0
YYD2_k127_2448709_30 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000592 270.0
YYD2_k127_2448709_31 ABC-type proline glycine betaine transport systems permease component K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000000001056 241.0
YYD2_k127_2448709_32 SOS response associated peptidase (SRAP) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD2_k127_2448709_33 Binding-protein-dependent transport system inner membrane component K05845,K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000002094 235.0
YYD2_k127_2448709_34 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000001597 207.0
YYD2_k127_2448709_35 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.000000000000000000000000000000000000000000000000000004714 196.0
YYD2_k127_2448709_37 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.000000000000000000000000000000000000009457 152.0
YYD2_k127_2448709_38 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000002751 146.0
YYD2_k127_2448709_39 Holin of 3TMs, for gene-transfer release - - - 0.000000000000000000000000000002962 124.0
YYD2_k127_2448709_4 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 599.0
YYD2_k127_2448709_40 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000006521 121.0
YYD2_k127_2448709_41 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.000000000000000000000000001725 115.0
YYD2_k127_2448709_42 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000007452 111.0
YYD2_k127_2448709_44 Domain of unknown function (DUF4169) - - - 0.000000114 55.0
YYD2_k127_2448709_45 Protein of unknown function (DUF2939) - - - 0.0000004817 59.0
YYD2_k127_2448709_46 Opacity family porin protein - - - 0.000003606 58.0
YYD2_k127_2448709_5 Creatinase/Prolidase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 580.0
YYD2_k127_2448709_6 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 572.0
YYD2_k127_2448709_7 Ornithine cyclodeaminase/mu-crystallin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 540.0
YYD2_k127_2448709_8 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 519.0
YYD2_k127_2448709_9 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005171 499.0
YYD2_k127_2461704_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.596e-286 887.0
YYD2_k127_2461704_1 Belongs to the UbiD family K03182 - 4.1.1.98 1.854e-279 864.0
YYD2_k127_2461704_10 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004347 414.0
YYD2_k127_2461704_11 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 398.0
YYD2_k127_2461704_12 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 395.0
YYD2_k127_2461704_13 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008831 370.0
YYD2_k127_2461704_14 Glycosyltransferase family 10 (fucosyltransferase) C-term - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 357.0
YYD2_k127_2461704_15 CorA-like Mg2+ transporter protein K03284,K16074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 354.0
YYD2_k127_2461704_16 COG1560 Lauroyl myristoyl acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 329.0
YYD2_k127_2461704_17 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 322.0
YYD2_k127_2461704_18 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 325.0
YYD2_k127_2461704_19 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004033 323.0
YYD2_k127_2461704_2 peptidase U62, modulator of DNA gyrase K03568 - - 7.292e-230 719.0
YYD2_k127_2461704_20 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 315.0
YYD2_k127_2461704_21 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001289 278.0
YYD2_k127_2461704_22 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004236 278.0
YYD2_k127_2461704_23 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002449 272.0
YYD2_k127_2461704_24 protein conserved in bacteria K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003273 265.0
YYD2_k127_2461704_25 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000000000002627 258.0
YYD2_k127_2461704_26 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001833 248.0
YYD2_k127_2461704_27 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000000000000000000000000000000000000003255 243.0
YYD2_k127_2461704_28 PFAM Peptidase family M20 M25 M40 K01436 - - 0.00000000000000000000000000000000000000000000000000000000000000000009709 246.0
YYD2_k127_2461704_29 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000001662 232.0
YYD2_k127_2461704_3 ABC-type multidrug transport system, ATPase and permease K06147,K11085 - - 9.926e-223 708.0
YYD2_k127_2461704_30 PFAM CMP dCMP deaminase zinc-binding K01487 - 3.5.4.3 0.00000000000000000000000000000000000000000000000000000000000006014 217.0
YYD2_k127_2461704_31 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000000000000003392 213.0
YYD2_k127_2461704_32 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.00000000000000000000000000000000000000000000000000001048 197.0
YYD2_k127_2461704_33 methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000001586 191.0
YYD2_k127_2461704_34 Protein of unknown function (DUF1295) - - - 0.00000000000000000000000000000000000000000000000584 181.0
YYD2_k127_2461704_35 Protein of unknown function (DUF983) - - - 0.000000000000000000000000000000000000000000297 163.0
YYD2_k127_2461704_36 - - - - 0.0000004134 59.0
YYD2_k127_2461704_37 - - - - 0.00003087 48.0
YYD2_k127_2461704_4 glutamate--cysteine ligase K01919 - 6.3.2.2 2.549e-218 684.0
YYD2_k127_2461704_5 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 3.596e-206 653.0
YYD2_k127_2461704_6 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 617.0
YYD2_k127_2461704_7 Zn-dependent proteases and their inactivated homologs K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 561.0
YYD2_k127_2461704_8 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 539.0
YYD2_k127_2461704_9 cytochrome c oxidase K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 423.0
YYD2_k127_2513859_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007444 606.0
YYD2_k127_2513859_1 ABC-type transport system involved in Fe-S cluster assembly, permease component K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001541 246.0
YYD2_k127_2513859_2 FeS assembly SUF system protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002014 244.0
YYD2_k127_2513859_3 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000003262 207.0
YYD2_k127_2513859_4 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000000000000000000000001572 201.0
YYD2_k127_2519263_0 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000000000000000000000000000000000000007572 224.0
YYD2_k127_2519263_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000001717 138.0
YYD2_k127_2519263_2 GCN5 family acetyltransferase - - - 0.000000000000000000000000004813 125.0
YYD2_k127_2523007_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 2.03e-205 653.0
YYD2_k127_2523007_1 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488,K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000002021 234.0
YYD2_k127_2523007_2 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.00000000000000000000000000000000000000000000000000009319 193.0
YYD2_k127_2523007_3 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000004306 191.0
YYD2_k127_2523007_4 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.00000000000000000000000000000002728 130.0
YYD2_k127_2523007_5 MreB/Mbl protein K04044 - - 0.0000000000000000000000007017 106.0
YYD2_k127_2532903_0 protein related to plant photosystem II stability assembly factor - - - 8.198e-218 680.0
YYD2_k127_2532903_1 ABC transporter, substrate-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 609.0
YYD2_k127_2532903_10 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 360.0
YYD2_k127_2532903_11 Pfam:AmoA K07120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 338.0
YYD2_k127_2532903_12 N-formylglutamate amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 326.0
YYD2_k127_2532903_13 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000005063 266.0
YYD2_k127_2532903_14 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007931 248.0
YYD2_k127_2532903_15 SapC - - - 0.000000000000000000000000000000000000000000000000000000000000000000009913 241.0
YYD2_k127_2532903_16 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000005407 235.0
YYD2_k127_2532903_17 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000005288 232.0
YYD2_k127_2532903_18 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000001273 216.0
YYD2_k127_2532903_19 ThiS family K03636 - - 0.000000000000000000000000000000008063 132.0
YYD2_k127_2532903_2 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005679 597.0
YYD2_k127_2532903_20 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000007292 83.0
YYD2_k127_2532903_21 Antibiotic biosynthesis monooxygenase - - - 0.00000000006939 69.0
YYD2_k127_2532903_3 MlrC C-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007014 565.0
YYD2_k127_2532903_4 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 500.0
YYD2_k127_2532903_5 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 510.0
YYD2_k127_2532903_6 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 488.0
YYD2_k127_2532903_7 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 462.0
YYD2_k127_2532903_8 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 462.0
YYD2_k127_2532903_9 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 417.0
YYD2_k127_254668_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 578.0
YYD2_k127_254668_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 550.0
YYD2_k127_254668_10 ABC-type multidrug transport system, ATPase and permease K18890 - - 0.0000000000000000000000000000000000005283 159.0
YYD2_k127_254668_12 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000003356 51.0
YYD2_k127_254668_13 - - - - 0.0004737 49.0
YYD2_k127_254668_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 429.0
YYD2_k127_254668_3 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486 424.0
YYD2_k127_254668_4 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 439.0
YYD2_k127_254668_5 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001176 277.0
YYD2_k127_254668_6 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000002527 239.0
YYD2_k127_254668_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000005445 204.0
YYD2_k127_254668_8 - - - - 0.000000000000000000000000000000000000000000000000002542 190.0
YYD2_k127_254668_9 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000007966 164.0
YYD2_k127_2549627_0 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0 1100.0
YYD2_k127_2549627_1 Belongs to the 5'-nucleotidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 584.0
YYD2_k127_2549627_2 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 548.0
YYD2_k127_2549627_3 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008725 490.0
YYD2_k127_2549627_4 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004939 285.0
YYD2_k127_2549627_5 Cytosine deaminase and related metal-dependent K01485 - 3.5.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003163 262.0
YYD2_k127_2549627_6 NADPH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000004274 236.0
YYD2_k127_2581237_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 524.0
YYD2_k127_2581237_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 519.0
YYD2_k127_2581237_2 COG0811 Biopolymer transport proteins K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 322.0
YYD2_k127_2581237_3 biopolymer transport protein K03559,K03560 - - 0.00000000000000000000000000000000000000000000005206 175.0
YYD2_k127_2581237_4 Cell division and transport-associated protein TolA - - - 0.00000000000000000000000000000000000000001775 165.0
YYD2_k127_2581237_5 thioesterase' K07107 - - 0.0000000000000000000000000000000006296 138.0
YYD2_k127_2581237_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000003076 120.0
YYD2_k127_2645199_0 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005324 417.0
YYD2_k127_2645199_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 383.0
YYD2_k127_2645199_2 ligase and related enzymes - - - 0.0000000000000000000000000000000000001209 157.0
YYD2_k127_2645199_3 Polysaccharide biosynthesis protein K13013 - - 0.0001164 46.0
YYD2_k127_2645199_4 epimerase - - - 0.0008731 44.0
YYD2_k127_271474_0 CoA binding domain - - - 1.459e-195 635.0
YYD2_k127_271474_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 607.0
YYD2_k127_271474_10 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 325.0
YYD2_k127_271474_11 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 327.0
YYD2_k127_271474_12 Transposase DDE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000771 320.0
YYD2_k127_271474_13 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000001561 243.0
YYD2_k127_271474_14 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000001403 134.0
YYD2_k127_271474_15 Transposase DDE domain - - - 0.000000000000000000000000000000001497 133.0
YYD2_k127_271474_16 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.000729 44.0
YYD2_k127_271474_2 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 502.0
YYD2_k127_271474_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 494.0
YYD2_k127_271474_4 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 464.0
YYD2_k127_271474_5 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 426.0
YYD2_k127_271474_6 PFAM adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 403.0
YYD2_k127_271474_7 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 383.0
YYD2_k127_271474_8 Precorrin-4 K05936 - 2.1.1.133,2.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006095 368.0
YYD2_k127_271474_9 short-chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 353.0
YYD2_k127_2732887_0 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 3.984e-319 995.0
YYD2_k127_2732887_1 PFAM Type II secretion system protein E K02454 - - 3.502e-204 649.0
YYD2_k127_2732887_10 fimbrial assembly K02461 - - 0.00000000000000000000000000000000001812 149.0
YYD2_k127_2732887_11 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K00058 - 1.1.1.26,1.1.1.399,1.1.1.95 0.000000000000000000000000000000002069 138.0
YYD2_k127_2732887_12 YHS domain - - - 0.000000000000000000000000000000005023 132.0
YYD2_k127_2732887_13 - - - - 0.00000000000000000000006465 103.0
YYD2_k127_2732887_14 General secretion pathway protein H K02457 - - 0.000000000000000000001669 100.0
YYD2_k127_2732887_15 Prokaryotic N-terminal methylation motif K02459 - - 0.00000000000000001772 93.0
YYD2_k127_2732887_16 Pfam:T4SC K02463 - - 0.00000000005698 71.0
YYD2_k127_2732887_17 Pfam:N_methyl_2 K02458 - - 0.00000002535 62.0
YYD2_k127_2732887_18 Type II secretion system (T2SS), protein M subtype b - - - 0.000009667 55.0
YYD2_k127_2732887_2 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 606.0
YYD2_k127_2732887_3 COG1404 Subtilisin-like serine proteases K12685,K20754 - 3.4.21.111 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 524.0
YYD2_k127_2732887_4 Biopterin-dependent aromatic amino acid hydroxylase K00500 - 1.14.16.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 374.0
YYD2_k127_2732887_5 Type II secretion system K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004761 290.0
YYD2_k127_2732887_6 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003124 276.0
YYD2_k127_2732887_7 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000001279 189.0
YYD2_k127_2732887_8 PFAM type II secretion system protein G K02456 - - 0.0000000000000000000000000000000000000000000000002118 180.0
YYD2_k127_2732887_9 LTXXQ motif family protein - - - 0.000000000000000000000000000000000001092 148.0
YYD2_k127_276375_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006955 468.0
YYD2_k127_276375_1 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 462.0
YYD2_k127_276375_2 2-oxoacid dehydrogenases acyltransferase (catalytic domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 441.0
YYD2_k127_276375_3 Dehydrogenase E1 component K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 427.0
YYD2_k127_276375_4 Nicotinate phosphoribosyltransferase (NAPRTase) family - - - 0.0000000000000000000000000000000000000000000000000000000000001293 216.0
YYD2_k127_276375_5 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000009455 93.0
YYD2_k127_276375_6 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions - - - 0.00000000000004047 73.0
YYD2_k127_2815693_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1148.0
YYD2_k127_2815693_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1097.0
YYD2_k127_2815693_10 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 413.0
YYD2_k127_2815693_11 Substrate binding domain of ABC-type glycine betaine transport system K05845 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0033554,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0071214,GO:0071470,GO:0071474,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0104004 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 404.0
YYD2_k127_2815693_12 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 412.0
YYD2_k127_2815693_13 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000975 362.0
YYD2_k127_2815693_14 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 354.0
YYD2_k127_2815693_15 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 335.0
YYD2_k127_2815693_16 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 328.0
YYD2_k127_2815693_17 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 327.0
YYD2_k127_2815693_18 ABC transporter permease protein yehY K05846 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000834 320.0
YYD2_k127_2815693_19 PFAM binding-protein-dependent transport systems inner membrane component K05846 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006753 285.0
YYD2_k127_2815693_2 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 7.697e-240 749.0
YYD2_k127_2815693_20 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 252.0
YYD2_k127_2815693_21 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000002024 245.0
YYD2_k127_2815693_22 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000009599 241.0
YYD2_k127_2815693_23 protein conserved in bacteria K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000181 201.0
YYD2_k127_2815693_24 Belongs to the Fur family K09826 - - 0.0000000000000000000000000000000000000000000000000000007994 196.0
YYD2_k127_2815693_25 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000005965 194.0
YYD2_k127_2815693_26 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.00000000000000000000000000000000000000000000000000004128 195.0
YYD2_k127_2815693_27 Low molecular weight phosphatase family K03741,K03892 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000002887 189.0
YYD2_k127_2815693_28 Pyroglutamyl peptidase K01304 - 3.4.19.3 0.00000000000000000000000000000000000000000000000005847 186.0
YYD2_k127_2815693_29 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000005737 177.0
YYD2_k127_2815693_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 5.691e-214 675.0
YYD2_k127_2815693_30 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000005038 139.0
YYD2_k127_2815693_31 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000005824 106.0
YYD2_k127_2815693_32 - - - - 0.00000000000000000000005703 109.0
YYD2_k127_2815693_33 - - - - 0.000008046 56.0
YYD2_k127_2815693_4 Cysteine-rich domain - - - 1.189e-209 659.0
YYD2_k127_2815693_5 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 534.0
YYD2_k127_2815693_6 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 528.0
YYD2_k127_2815693_7 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038,K21977 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 513.0
YYD2_k127_2815693_8 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 513.0
YYD2_k127_2815693_9 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 490.0
YYD2_k127_2818248_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1420.0
YYD2_k127_2818248_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 4.054e-316 986.0
YYD2_k127_2818248_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 374.0
YYD2_k127_2818248_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 352.0
YYD2_k127_2818248_4 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 314.0
YYD2_k127_2818248_5 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 309.0
YYD2_k127_2818248_6 transcriptional regulator - - - 0.00000000000000000000000000000000000001532 153.0
YYD2_k127_2818248_7 - - - - 0.0000000000000000005491 91.0
YYD2_k127_2818248_8 Recombinase zinc beta ribbon domain - - - 0.000000007153 61.0
YYD2_k127_2818732_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008089 494.0
YYD2_k127_2818732_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 444.0
YYD2_k127_2818732_2 Domain of unknown function (DUF3473) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 363.0
YYD2_k127_2818732_3 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 353.0
YYD2_k127_2818732_4 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 337.0
YYD2_k127_2818732_5 COG4618 ABC-type protease lipase transport system, ATPase and permease components K16299 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003811 283.0
YYD2_k127_2818732_6 CobQ/CobB/MinD/ParA nucleotide binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003168 279.0
YYD2_k127_2818732_7 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001465 250.0
YYD2_k127_2818732_8 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000033 172.0
YYD2_k127_2818732_9 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000009925 157.0
YYD2_k127_2821515_0 EAL domain K21024 - 3.1.4.52 0.000000000000000000000000000000000000000000000000000000000000001834 233.0
YYD2_k127_2821515_1 TrkA-C domain K03455 - - 0.000000000000000000000000000000000000000000000000000000000000102 217.0
YYD2_k127_2821515_2 Aminotransferase class I and II K21784 - - 0.0000000000000000000000000006112 116.0
YYD2_k127_2821515_3 NUDIX domain - - - 0.0000000002887 70.0
YYD2_k127_2852126_0 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 597.0
YYD2_k127_2852126_1 Heparinase II/III-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 513.0
YYD2_k127_2852126_10 Acetyltransferase (GNAT) domain - - - 0.0000000002574 64.0
YYD2_k127_2852126_2 Aldo/keto reductase family K05882 - 1.1.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 488.0
YYD2_k127_2852126_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 475.0
YYD2_k127_2852126_4 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005467 421.0
YYD2_k127_2852126_5 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 339.0
YYD2_k127_2852126_6 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000002088 244.0
YYD2_k127_2852126_7 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000009162 202.0
YYD2_k127_2852126_8 Lipopolysaccharide-assembly K03643 - - 0.00000000000000000000004926 105.0
YYD2_k127_2852126_9 Protein of unknown function (DUF1674) - - - 0.00000000021 63.0
YYD2_k127_2909165_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000006187 168.0
YYD2_k127_2928293_0 Protein of unknown function (DUF521) K09123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 535.0
YYD2_k127_2928293_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 537.0
YYD2_k127_2928293_2 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 527.0
YYD2_k127_2928293_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 383.0
YYD2_k127_2928293_4 racemase activity, acting on amino acids and derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 373.0
YYD2_k127_2928293_5 Chloride channel protein K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004289 359.0
YYD2_k127_2928293_6 Protein of unknown function DUF126 K09128 - - 0.0000000000000000000000000001711 119.0
YYD2_k127_2928293_7 membrane K07794 - - 0.000000001208 68.0
YYD2_k127_2937087_0 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 476.0
YYD2_k127_2937087_1 Putative neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 364.0
YYD2_k127_2937087_2 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 343.0
YYD2_k127_2937087_3 COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family K18459 - 3.5.3.17 0.0000000000000000000000000000000000000000000000000000000000000000006742 231.0
YYD2_k127_2937087_4 COG1247 Sortase and related acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000009549 229.0
YYD2_k127_2937087_5 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000000000000006454 168.0
YYD2_k127_2937087_6 LysE type translocator - - - 0.0000000000000000000000000000000000000000004627 165.0
YYD2_k127_2937087_7 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000002888 174.0
YYD2_k127_2937087_8 - - - - 0.000000000000000000000000000000002765 144.0
YYD2_k127_2937215_0 - - - - 0.0000000000000000000000000000008016 139.0
YYD2_k127_2937215_1 - - - - 0.0000000000000000000000000000249 132.0
YYD2_k127_2957733_0 adenosylmethionine-8-amino-7-oxononanoate transaminase activity K00822 - 2.6.1.18 2.002e-216 681.0
YYD2_k127_2957733_1 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006017 566.0
YYD2_k127_2957733_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 409.0
YYD2_k127_2957733_3 Cysteine-rich CWC - - - 0.000000004009 65.0
YYD2_k127_2960982_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0 1283.0
YYD2_k127_2960982_1 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 591.0
YYD2_k127_2960982_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 561.0
YYD2_k127_2960982_3 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 510.0
YYD2_k127_2960982_4 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 460.0
YYD2_k127_2960982_5 VWA domain containing CoxE-like protein K07161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009841 464.0
YYD2_k127_2960982_6 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 361.0
YYD2_k127_2960982_7 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004564 271.0
YYD2_k127_2960982_8 XdhC and CoxI family - - - 0.0000000000000000000000000000000000000000000007654 171.0
YYD2_k127_2960982_9 NifU-like N terminal domain K04488 - - 0.0000000000000000000000000000003657 128.0
YYD2_k127_2969478_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1351.0
YYD2_k127_2969478_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 4.999e-297 926.0
YYD2_k127_2969478_10 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 496.0
YYD2_k127_2969478_11 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 505.0
YYD2_k127_2969478_12 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004761 497.0
YYD2_k127_2969478_13 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 442.0
YYD2_k127_2969478_14 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007557 445.0
YYD2_k127_2969478_15 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 430.0
YYD2_k127_2969478_16 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 421.0
YYD2_k127_2969478_17 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 413.0
YYD2_k127_2969478_18 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 404.0
YYD2_k127_2969478_19 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 392.0
YYD2_k127_2969478_2 COG0513 Superfamily II DNA and RNA helicases K17675 - 3.6.4.13 5.38e-278 893.0
YYD2_k127_2969478_20 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 - 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007426 385.0
YYD2_k127_2969478_21 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 351.0
YYD2_k127_2969478_22 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619 298.0
YYD2_k127_2969478_23 Sugar (and other) transporter K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 306.0
YYD2_k127_2969478_24 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002805 286.0
YYD2_k127_2969478_25 membrane protein terc - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005164 279.0
YYD2_k127_2969478_26 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004467 268.0
YYD2_k127_2969478_27 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001355 263.0
YYD2_k127_2969478_28 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001521 261.0
YYD2_k127_2969478_29 COG4235 Cytochrome c biogenesis factor K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003303 261.0
YYD2_k127_2969478_3 COG1138 Cytochrome c biogenesis factor K02198 - - 1.732e-275 866.0
YYD2_k127_2969478_30 Protein of unknown function (DUF1223) - - - 0.0000000000000000000000000000000000000000000000000000000000001717 222.0
YYD2_k127_2969478_31 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000000000001092 218.0
YYD2_k127_2969478_32 Redoxin K02199 - - 0.00000000000000000000000000000000000000000000000000000000000811 211.0
YYD2_k127_2969478_33 COG2010 Cytochrome c, mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000000000129 187.0
YYD2_k127_2969478_34 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000005916 184.0
YYD2_k127_2969478_35 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000000000008517 166.0
YYD2_k127_2969478_36 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.000000000000000000000000000000000000000003447 170.0
YYD2_k127_2969478_37 Universal stress protein family - - - 0.0000000000000000000000000000000000001123 146.0
YYD2_k127_2969478_38 protein conserved in bacteria - - - 0.000000000000000000000000000001713 123.0
YYD2_k127_2969478_39 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.0000000000000000000000000001039 122.0
YYD2_k127_2969478_4 Molecular chaperone. Has ATPase activity K04079 - - 9.18e-244 786.0
YYD2_k127_2969478_40 Domain of unknown function (DUF4926) - - - 0.000000000007962 67.0
YYD2_k127_2969478_41 Helix-turn-helix domain - - - 0.0000000002598 65.0
YYD2_k127_2969478_5 Periplasmic binding protein K01999 - - 5.854e-202 636.0
YYD2_k127_2969478_6 Protein of unknown function (DUF2652) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 572.0
YYD2_k127_2969478_7 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 542.0
YYD2_k127_2969478_8 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 533.0
YYD2_k127_2969478_9 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 536.0
YYD2_k127_2979328_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 3.538e-280 876.0
YYD2_k127_2979328_1 Glycosyl transferase 4-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 420.0
YYD2_k127_2979328_10 epimerase - - - 0.0000000000000000000000000000000000009247 156.0
YYD2_k127_2979328_11 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000001708 135.0
YYD2_k127_2979328_12 - - - - 0.0000000000001414 84.0
YYD2_k127_2979328_13 Asparagine synthase K01953 - 6.3.5.4 0.0000000004524 64.0
YYD2_k127_2979328_2 PFAM Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007057 371.0
YYD2_k127_2979328_3 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 351.0
YYD2_k127_2979328_4 Ribosomal protein L11 methyltransferase (PrmA) K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 342.0
YYD2_k127_2979328_5 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 308.0
YYD2_k127_2979328_6 pfam abc K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 299.0
YYD2_k127_2979328_7 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003569 253.0
YYD2_k127_2979328_8 peptidoglycan biosynthetic process K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000004672 246.0
YYD2_k127_2979328_9 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000001507 226.0
YYD2_k127_3002808_0 Formate dehydrogenase subunit alpha - - - 0.0 1434.0
YYD2_k127_3002808_1 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 2.63e-287 895.0
YYD2_k127_3002808_10 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000005665 113.0
YYD2_k127_3002808_2 Dehydrogenase K00122 - 1.17.1.9 2.55e-280 870.0
YYD2_k127_3002808_3 Belongs to the TPP enzyme family K01652 - 2.2.1.6 6.106e-252 792.0
YYD2_k127_3002808_4 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006662 543.0
YYD2_k127_3002808_5 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006715 451.0
YYD2_k127_3002808_6 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 422.0
YYD2_k127_3002808_7 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003904 389.0
YYD2_k127_3002808_8 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001506 271.0
YYD2_k127_3002808_9 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001351 248.0
YYD2_k127_3075853_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0 1236.0
YYD2_k127_3075853_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 4.354e-203 643.0
YYD2_k127_3075853_10 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 434.0
YYD2_k127_3075853_11 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 369.0
YYD2_k127_3075853_12 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 341.0
YYD2_k127_3075853_13 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 332.0
YYD2_k127_3075853_14 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 322.0
YYD2_k127_3075853_15 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 312.0
YYD2_k127_3075853_16 Binding-protein-dependent transport system inner membrane component K02029,K10019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 295.0
YYD2_k127_3075853_17 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005646 270.0
YYD2_k127_3075853_18 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005286 259.0
YYD2_k127_3075853_19 COG2518 Protein-L-isoaspartate carboxylmethyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000006993 245.0
YYD2_k127_3075853_2 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 616.0
YYD2_k127_3075853_20 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008269 243.0
YYD2_k127_3075853_21 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000000000002073 227.0
YYD2_k127_3075853_22 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000004472 199.0
YYD2_k127_3075853_23 SOS response K14160 - - 0.000000000000000000000000000000000009999 146.0
YYD2_k127_3075853_24 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000911 126.0
YYD2_k127_3075853_25 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.0000000000000000000000000000285 122.0
YYD2_k127_3075853_26 Molybdenum ABC transporter periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000007825 105.0
YYD2_k127_3075853_27 Protein conserved in bacteria K09991 - - 0.0000000000000001708 87.0
YYD2_k127_3075853_28 - - - - 0.00000000000007489 79.0
YYD2_k127_3075853_29 Histidine kinase K14986 - 2.7.13.3 0.00000179 59.0
YYD2_k127_3075853_3 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009131 528.0
YYD2_k127_3075853_4 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 526.0
YYD2_k127_3075853_5 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009201 504.0
YYD2_k127_3075853_6 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01760 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 482.0
YYD2_k127_3075853_7 acid transport system permease K09970 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 478.0
YYD2_k127_3075853_8 acid transport K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 431.0
YYD2_k127_3075853_9 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 437.0
YYD2_k127_315472_0 ABC-type Fe3 transport system permease component K02011 - - 1.129e-313 975.0
YYD2_k127_315472_1 Belongs to the TPP enzyme family K03336 - 3.7.1.22 1.288e-269 856.0
YYD2_k127_315472_10 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02049 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 482.0
YYD2_k127_315472_11 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 468.0
YYD2_k127_315472_12 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 461.0
YYD2_k127_315472_13 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002354 454.0
YYD2_k127_315472_14 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 427.0
YYD2_k127_315472_15 Xylose isomerase-like TIM barrel K03335 - 4.2.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 427.0
YYD2_k127_315472_16 Required for the activity of the bacterial periplasmic transport system of putrescine K11069,K11073 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 409.0
YYD2_k127_315472_17 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 392.0
YYD2_k127_315472_18 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895 384.0
YYD2_k127_315472_19 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 381.0
YYD2_k127_315472_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.366e-254 794.0
YYD2_k127_315472_20 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 377.0
YYD2_k127_315472_21 Putrescine transport system permease K11075 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000197 350.0
YYD2_k127_315472_22 KduI/IolB family K03337 - 5.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 348.0
YYD2_k127_315472_23 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 342.0
YYD2_k127_315472_24 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 335.0
YYD2_k127_315472_25 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 331.0
YYD2_k127_315472_26 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 340.0
YYD2_k127_315472_27 PFAM Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 322.0
YYD2_k127_315472_28 PFAM binding-protein-dependent transport systems inner membrane component K11070,K11074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 328.0
YYD2_k127_315472_29 GTP cyclohydrolase K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 308.0
YYD2_k127_315472_3 Uncharacterized protein conserved in bacteria (DUF2090) K03338 - 2.7.1.92 5.863e-228 725.0
YYD2_k127_315472_30 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 304.0
YYD2_k127_315472_31 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 306.0
YYD2_k127_315472_32 KR domain K00034 - 1.1.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000598 298.0
YYD2_k127_315472_33 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001855 275.0
YYD2_k127_315472_34 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000005839 254.0
YYD2_k127_315472_35 Sugar isomerase (SIS) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003676 252.0
YYD2_k127_315472_36 Spondin_N - - - 0.00000000000000000000000000000000000000000000000000000000000004178 220.0
YYD2_k127_315472_37 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000007168 195.0
YYD2_k127_315472_38 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000001065 201.0
YYD2_k127_315472_39 integral membrane protein - - - 0.000000000000000000000000000000000000000001884 161.0
YYD2_k127_315472_4 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 607.0
YYD2_k127_315472_5 Na phosphate symporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 561.0
YYD2_k127_315472_6 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 530.0
YYD2_k127_315472_7 Bacterial extracellular solute-binding protein K02012,K11081 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 533.0
YYD2_k127_315472_8 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 528.0
YYD2_k127_315472_9 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 537.0
YYD2_k127_3166750_0 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 593.0
YYD2_k127_3166750_1 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 432.0
YYD2_k127_3166750_2 beta-lactamase activity K07126 - - 0.000000000000000000000000000000000000004522 158.0
YYD2_k127_3215635_0 Belongs to the thiolase family K00626 - 2.3.1.9 6.501e-212 663.0
YYD2_k127_3215635_1 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 1.714e-198 627.0
YYD2_k127_3215635_10 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000623 314.0
YYD2_k127_3215635_11 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 308.0
YYD2_k127_3215635_12 methionine biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007068 272.0
YYD2_k127_3215635_13 Polyhydroxyalkanoate synthesis repressor - - - 0.000000000000000000000000000000000000000000000000000000000000000000005804 241.0
YYD2_k127_3215635_14 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000001347 218.0
YYD2_k127_3215635_15 Cupin superfamily (DUF985) K09705 - - 0.000000000000000000000000000000000000000000000000000000000006218 211.0
YYD2_k127_3215635_16 chorismate mutase - - - 0.0000000000000000000000000000000000000000000000000000000001493 216.0
YYD2_k127_3215635_17 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000000000000000000004091 207.0
YYD2_k127_3215635_18 Protein of unknown function (DUF3105) - - - 0.00000000000000000000000000000000000000000000000001699 190.0
YYD2_k127_3215635_19 Yhs domain-containing protein - - - 0.00000000000000000000000000000000003437 141.0
YYD2_k127_3215635_2 COG3263 NhaP-type Na H and K H antiporters with a unique C-terminal domain K11105 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 577.0
YYD2_k127_3215635_20 Uncharacterized protein conserved in bacteria (DUF2125) - - - 0.00000000000000000000000000000002038 141.0
YYD2_k127_3215635_21 EAL domain - - - 0.000000003667 59.0
YYD2_k127_3215635_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 458.0
YYD2_k127_3215635_4 alpha/beta hydrolase fold K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003034 442.0
YYD2_k127_3215635_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023,K00059 - 1.1.1.100,1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006232 409.0
YYD2_k127_3215635_6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 406.0
YYD2_k127_3215635_7 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 350.0
YYD2_k127_3215635_8 prephenate dehydrogenase K00220 - 1.3.1.12,1.3.1.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006098 351.0
YYD2_k127_3215635_9 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 341.0
YYD2_k127_3295696_0 Predicted integral membrane protein (DUF2189) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 383.0
YYD2_k127_3295696_1 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 368.0
YYD2_k127_3295696_10 - - - - 0.00000000000000000000000001038 115.0
YYD2_k127_3295696_11 Phosphate ABC transporter substrate-binding protein, PhoT family K02040 - - 0.00000000000000000000003019 110.0
YYD2_k127_3295696_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 323.0
YYD2_k127_3295696_3 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009061 309.0
YYD2_k127_3295696_4 Carbonic anhydrase K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000296 278.0
YYD2_k127_3295696_5 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000009345 244.0
YYD2_k127_3295696_6 Domain of unknown function (DUF4394) - - - 0.0000000000000000000000000000000000000000000000000000000000000000004544 242.0
YYD2_k127_3295696_7 redox protein regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000000000000000000000007143 213.0
YYD2_k127_3295696_8 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000002611 162.0
YYD2_k127_3295696_9 CHRD domain - - - 0.0000000000000000000000000000000000005904 147.0
YYD2_k127_3358244_0 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 497.0
YYD2_k127_3358244_1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.0000000000000000001267 95.0
YYD2_k127_3362078_0 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 422.0
YYD2_k127_3362078_1 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000000008181 199.0
YYD2_k127_3362078_2 - - - - 0.000000000000000000000000000000000000000000000001029 180.0
YYD2_k127_3362078_3 - - - - 0.0000000000000000000000000001726 117.0
YYD2_k127_3362078_4 AAA domain K07028 - - 0.0000000000001418 72.0
YYD2_k127_343765_0 Adenylate cyclase K01768 - 4.6.1.1 4.671e-262 818.0
YYD2_k127_343765_1 Protein conserved in bacteria K07793 - - 3.058e-239 748.0
YYD2_k127_343765_2 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000004871 124.0
YYD2_k127_3451910_0 Asp/Glu/Hydantoin racemase K01779 - 5.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 397.0
YYD2_k127_3451910_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 357.0
YYD2_k127_3451910_2 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001972 263.0
YYD2_k127_3451910_3 Saccharopine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000008378 200.0
YYD2_k127_3451910_4 - - - - 0.000000000000000000000000000000000000001808 150.0
YYD2_k127_3451910_5 - - - - 0.00000000000000005089 94.0
YYD2_k127_3451910_6 acyl-CoA transferase - - - 0.0000000000005583 79.0
YYD2_k127_3453060_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 481.0
YYD2_k127_3453060_1 PFAM Patatin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 471.0
YYD2_k127_3453060_2 Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 321.0
YYD2_k127_3453060_3 transport system periplasmic component K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 305.0
YYD2_k127_3453060_4 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000002976 264.0
YYD2_k127_3453060_5 NIPSNAP family containing protein - - - 0.00000000000000000000000000000000000000000001901 164.0
YYD2_k127_3453060_6 Transposase - - - 0.000000000000009035 85.0
YYD2_k127_3453060_7 Bacterial transcription activator, effector binding domain K13652 - - 0.0000000004574 61.0
YYD2_k127_3463575_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 3.365e-292 907.0
YYD2_k127_3463575_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 585.0
YYD2_k127_3463575_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 307.0
YYD2_k127_3463575_3 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006537 287.0
YYD2_k127_3463575_4 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003372 273.0
YYD2_k127_3463575_5 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000008242 199.0
YYD2_k127_3472572_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1056.0
YYD2_k127_3472572_1 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 450.0
YYD2_k127_3472572_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 375.0
YYD2_k127_3472572_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 350.0
YYD2_k127_3472572_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000006184 216.0
YYD2_k127_3472572_5 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000002152 186.0
YYD2_k127_3472572_6 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000007854 172.0
YYD2_k127_3472572_7 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.0000000000000000000000000000000000000002311 158.0
YYD2_k127_3472572_8 - - - - 0.00001349 55.0
YYD2_k127_351402_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1178.0
YYD2_k127_351402_1 COG0471 Di- and tricarboxylate transporters - - - 9.762e-195 623.0
YYD2_k127_351402_10 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000001863 158.0
YYD2_k127_351402_11 Putative 2OG-Fe(II) oxygenase - - - 0.00000000000000000000000000000000000002335 153.0
YYD2_k127_351402_12 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.00000000000000000000000000006405 125.0
YYD2_k127_351402_13 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.0000000000000000000000000005328 117.0
YYD2_k127_351402_14 Acetyltransferase (GNAT) domain - - - 0.0000000000000003635 84.0
YYD2_k127_351402_2 PAS fold K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 533.0
YYD2_k127_351402_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 467.0
YYD2_k127_351402_4 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 376.0
YYD2_k127_351402_5 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 375.0
YYD2_k127_351402_6 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007333 357.0
YYD2_k127_351402_7 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 334.0
YYD2_k127_351402_8 glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008967 316.0
YYD2_k127_351402_9 EVE domain - - - 0.00000000000000000000000000000000000000000000000000002643 192.0
YYD2_k127_3522676_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1330.0
YYD2_k127_3522676_1 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K01847 - 5.4.99.2 0.0 1097.0
YYD2_k127_3522676_10 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006427 422.0
YYD2_k127_3522676_11 Carbon-nitrogen hydrolase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 353.0
YYD2_k127_3522676_12 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 355.0
YYD2_k127_3522676_13 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 346.0
YYD2_k127_3522676_14 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009185 332.0
YYD2_k127_3522676_15 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005121 302.0
YYD2_k127_3522676_16 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002858 278.0
YYD2_k127_3522676_17 sugar phosphatases of the HAD superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000484 276.0
YYD2_k127_3522676_18 Peptidase S24-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001341 247.0
YYD2_k127_3522676_19 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000001384 243.0
YYD2_k127_3522676_2 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 2.387e-317 988.0
YYD2_k127_3522676_20 PFAM Methyltransferase type - - - 0.00000000000000000000000000000000000000000000000000000000000000002543 228.0
YYD2_k127_3522676_21 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000004014 220.0
YYD2_k127_3522676_22 HELICc2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000001322 184.0
YYD2_k127_3522676_23 Protein of unknown function (DUF952) - - - 0.0000000000000000000000000000000000000000000007282 168.0
YYD2_k127_3522676_24 - - - - 0.00000000000000000000000000000000000000006927 157.0
YYD2_k127_3522676_25 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000000000000007548 152.0
YYD2_k127_3522676_26 lytic transglycosylase activity - - - 0.0000000000000000000000000000000007061 144.0
YYD2_k127_3522676_27 AraC-like ligand binding domain - - - 0.000000000000000000000000000000002019 136.0
YYD2_k127_3522676_28 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000009318 134.0
YYD2_k127_3522676_29 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000001178 123.0
YYD2_k127_3522676_3 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 1.656e-246 770.0
YYD2_k127_3522676_30 PAS domain - - - 0.0000000000000003729 85.0
YYD2_k127_3522676_31 Domain of unknown function (DUF4115) K15539 - - 0.0000000000002239 77.0
YYD2_k127_3522676_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.494e-227 722.0
YYD2_k127_3522676_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 2.713e-209 668.0
YYD2_k127_3522676_6 Bacterial extracellular solute-binding protein, family 7 - - - 2.589e-207 647.0
YYD2_k127_3522676_7 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.514e-205 645.0
YYD2_k127_3522676_8 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
YYD2_k127_3522676_9 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 485.0
YYD2_k127_3548653_0 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 615.0
YYD2_k127_3548653_1 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 542.0
YYD2_k127_3548653_10 UPF0056 inner membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000000009996 193.0
YYD2_k127_3548653_11 Haemolysin-III related K11068 - - 0.0000000000000000000000000000000000000000000003979 179.0
YYD2_k127_3548653_13 - - - - 0.0000000000000000000000000000000008277 136.0
YYD2_k127_3548653_14 - - - - 0.000000000000000000000000000000001707 140.0
YYD2_k127_3548653_15 ABC-type transport auxiliary lipoprotein component K09857 - - 0.000000000000000000000000008225 117.0
YYD2_k127_3548653_16 - - - - 0.0000000001271 67.0
YYD2_k127_3548653_17 17 kDa outer membrane surface antigen - - - 0.000003411 54.0
YYD2_k127_3548653_2 Paraquat-inducible protein B K06192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007341 530.0
YYD2_k127_3548653_3 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 507.0
YYD2_k127_3548653_4 Paraquat-inducible protein A K03808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000934 497.0
YYD2_k127_3548653_5 Protein of unknown function (DUF2950) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 314.0
YYD2_k127_3548653_6 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005676 312.0
YYD2_k127_3548653_7 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 296.0
YYD2_k127_3548653_8 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008479 291.0
YYD2_k127_3548653_9 OsmC-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000002969 242.0
YYD2_k127_3649271_0 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 406.0
YYD2_k127_3649271_1 Protein of unknown function (DUF2459) - - - 0.000000000000000000000000000000000000000000002136 175.0
YYD2_k127_3676572_0 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 504.0
YYD2_k127_3676572_1 ABC transporter substrate-binding protein K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 487.0
YYD2_k127_3676572_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000123 227.0
YYD2_k127_3676572_11 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000005322 200.0
YYD2_k127_3676572_12 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000004013 169.0
YYD2_k127_3676572_13 - - - - 0.0000003129 61.0
YYD2_k127_3676572_2 N-methylhydantoinase B acetone carboxylase, alpha subunit K01474 - 3.5.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 396.0
YYD2_k127_3676572_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 394.0
YYD2_k127_3676572_4 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009502 361.0
YYD2_k127_3676572_5 Isocitrate lyase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 364.0
YYD2_k127_3676572_6 amino acid K01996,K11958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 325.0
YYD2_k127_3676572_7 abc transporter K01995,K10822 - 3.6.3.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008039 302.0
YYD2_k127_3676572_8 UTRA K03710 - - 0.00000000000000000000000000000000000000000000000000000000000000000001972 245.0
YYD2_k127_3676572_9 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000006212 219.0
YYD2_k127_3677504_0 Major facilitator Superfamily - - - 0.00000000000000000000004885 113.0
YYD2_k127_3677504_1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 0.00000000000000002099 81.0
YYD2_k127_3677504_2 Fe-S protein K06938 - - 0.000001606 50.0
YYD2_k127_3750360_0 Belongs to the CarB family K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 473.0
YYD2_k127_3750360_1 Iron/manganese superoxide dismutases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 348.0
YYD2_k127_3750360_2 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 288.0
YYD2_k127_3750360_3 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002566 247.0
YYD2_k127_3750360_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000093 239.0
YYD2_k127_3767398_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 3.38e-317 979.0
YYD2_k127_3767398_1 Phytanoyl-CoA dioxygenase (PhyH) K10674 - 1.14.11.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007865 475.0
YYD2_k127_3767398_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000002431 190.0
YYD2_k127_3767398_11 COG0346 Lactoylglutathione lyase and related lyases K07032 - - 0.000000000000000000000000000000000000000000000000001211 188.0
YYD2_k127_3767398_12 Putative stress-induced transcription regulator - - - 0.0000000000000000000000000000000000000000000000007115 181.0
YYD2_k127_3767398_13 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000003328 178.0
YYD2_k127_3767398_14 succinate dehydrogenase K00242 - - 0.00000000000000000000000000000000004019 144.0
YYD2_k127_3767398_15 Alginate lyase - - - 0.000000000000000000000000000009823 132.0
YYD2_k127_3767398_16 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000005509 84.0
YYD2_k127_3767398_17 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000003401 80.0
YYD2_k127_3767398_2 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 448.0
YYD2_k127_3767398_3 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 441.0
YYD2_k127_3767398_4 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 431.0
YYD2_k127_3767398_5 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000669 369.0
YYD2_k127_3767398_6 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007214 367.0
YYD2_k127_3767398_7 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005099 244.0
YYD2_k127_3767398_8 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006003 250.0
YYD2_k127_3767398_9 Asp Glu hydantoin racemase - - - 0.00000000000000000000000000000000000000000000000000001785 195.0
YYD2_k127_3784402_0 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 3.109e-251 797.0
YYD2_k127_3784402_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 9.829e-242 754.0
YYD2_k127_3784402_2 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 507.0
YYD2_k127_3784402_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 503.0
YYD2_k127_3784402_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 459.0
YYD2_k127_3784402_5 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 436.0
YYD2_k127_3784402_6 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000005934 237.0
YYD2_k127_3784402_7 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000003558 116.0
YYD2_k127_3798889_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 8.31e-321 1000.0
YYD2_k127_3943541_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 352.0
YYD2_k127_3958839_0 Glycosyl transferase family group 2 - - - 1.234e-263 840.0
YYD2_k127_3958839_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 569.0
YYD2_k127_3958839_10 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000004181 169.0
YYD2_k127_3958839_11 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000005495 160.0
YYD2_k127_3958839_12 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000001954 157.0
YYD2_k127_3958839_2 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007529 556.0
YYD2_k127_3958839_3 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 468.0
YYD2_k127_3958839_4 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001446 278.0
YYD2_k127_3958839_5 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001504 276.0
YYD2_k127_3958839_6 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000002981 236.0
YYD2_k127_3958839_7 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000001145 229.0
YYD2_k127_3958839_8 Chlorite dismutase - - - 0.0000000000000000000000000000000000000000000000000000000000001377 219.0
YYD2_k127_3958839_9 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000002169 185.0
YYD2_k127_3970426_0 Histidine kinase-like ATPases K14980 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 474.0
YYD2_k127_3970426_1 flagellar motor protein K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000456 246.0
YYD2_k127_3970426_2 Transcriptional regulatory protein, C terminal K14981 - - 0.000000000000000000000000000000000000001315 150.0
YYD2_k127_4029255_0 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000414 188.0
YYD2_k127_4029255_1 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000002418 181.0
YYD2_k127_4029255_2 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.00000000000000000000000000000000001041 138.0
YYD2_k127_4029255_3 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000007315 63.0
YYD2_k127_4029657_0 COG1042 Acyl-CoA synthetase (NDP forming) K09181 - - 1.075e-317 996.0
YYD2_k127_4029657_1 GTP-binding protein TypA K06207 - - 4.47e-305 944.0
YYD2_k127_4029657_10 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 321.0
YYD2_k127_4029657_11 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 317.0
YYD2_k127_4029657_12 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007244 265.0
YYD2_k127_4029657_13 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000003772 208.0
YYD2_k127_4029657_14 Etoposide-induced protein 2.4 (EI24) K06203 - - 0.00000000000000000000000000000000000000000000000004536 187.0
YYD2_k127_4029657_15 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.000000000000000000000000000000000000000002097 166.0
YYD2_k127_4029657_16 integral membrane protein - - - 0.0000000000000000000000000000000000129 141.0
YYD2_k127_4029657_17 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000001811 143.0
YYD2_k127_4029657_19 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000008715 65.0
YYD2_k127_4029657_2 Bacterial protein of unknown function (DUF839) K07093 - - 3.729e-241 767.0
YYD2_k127_4029657_3 Bacterial protein of unknown function (DUF839) K07093 - - 1.419e-239 758.0
YYD2_k127_4029657_4 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 597.0
YYD2_k127_4029657_5 FAD binding domain K00103 - 1.1.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 505.0
YYD2_k127_4029657_6 Acetyl-coenzyme A transporter 1 K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 490.0
YYD2_k127_4029657_7 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 427.0
YYD2_k127_4029657_8 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 396.0
YYD2_k127_4029657_9 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 325.0
YYD2_k127_4029751_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.00000000000000008566 81.0
YYD2_k127_4029751_1 Major Facilitator Superfamily - - - 0.0000000000002196 82.0
YYD2_k127_4029751_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000008715 65.0
YYD2_k127_4029751_3 Fad dependent oxidoreductase - - - 0.00001726 57.0
YYD2_k127_4056243_0 Glutaminyl-tRNA synthetase K01886 - 6.1.1.18 5.526e-215 675.0
YYD2_k127_4056243_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 295.0
YYD2_k127_4056243_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003372 287.0
YYD2_k127_4056243_3 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000001171 175.0
YYD2_k127_4058029_0 Glycosyl hydrolases family 15 - - - 5.627e-235 742.0
YYD2_k127_4058029_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02035 - - 3.318e-227 715.0
YYD2_k127_4058029_10 Oxidoreductase FAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000001933 213.0
YYD2_k127_4058029_11 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000000000000000000002328 198.0
YYD2_k127_4058029_12 Bacterial regulatory proteins, tetR family K09017 - - 0.00000000000000000000000000000000000000000000000354 181.0
YYD2_k127_4058029_13 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000005787 133.0
YYD2_k127_4058029_14 PFAM CBS domain containing protein - - - 0.000000000004491 70.0
YYD2_k127_4058029_15 - - - - 0.0000004792 57.0
YYD2_k127_4058029_16 Sel1-like repeats. - - - 0.0001293 53.0
YYD2_k127_4058029_2 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 564.0
YYD2_k127_4058029_3 Binding-protein-dependent transport system inner membrane component K02033 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 521.0
YYD2_k127_4058029_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 439.0
YYD2_k127_4058029_5 P-aminobenzoate N-oxygenase AurF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 407.0
YYD2_k127_4058029_6 ATPases associated with a variety of cellular activities K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 400.0
YYD2_k127_4058029_7 ABC transporter K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008721 339.0
YYD2_k127_4058029_8 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001105 295.0
YYD2_k127_4058029_9 spore germination - - - 0.000000000000000000000000000000000000000000000000000000000000000000003968 244.0
YYD2_k127_4074963_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2241.0
YYD2_k127_4074963_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1887.0
YYD2_k127_4130481_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 2.498e-200 642.0
YYD2_k127_4130481_1 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 342.0
YYD2_k127_4130481_2 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 346.0
YYD2_k127_4130481_3 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 295.0
YYD2_k127_4130481_4 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000000003478 151.0
YYD2_k127_4130481_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000003771 124.0
YYD2_k127_4130481_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000001663 113.0
YYD2_k127_4130481_7 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.00000000000000004328 85.0
YYD2_k127_4130481_8 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000004765 78.0
YYD2_k127_4143592_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.783e-313 970.0
YYD2_k127_4143592_1 FAD binding domain K05712 - 1.14.13.127 1.519e-215 685.0
YYD2_k127_4143592_10 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 442.0
YYD2_k127_4143592_11 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 434.0
YYD2_k127_4143592_12 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 386.0
YYD2_k127_4143592_13 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006898 375.0
YYD2_k127_4143592_14 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 373.0
YYD2_k127_4143592_15 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007836 359.0
YYD2_k127_4143592_16 branched-chain amino acid transport K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 336.0
YYD2_k127_4143592_17 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 335.0
YYD2_k127_4143592_18 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006446 339.0
YYD2_k127_4143592_19 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 332.0
YYD2_k127_4143592_2 Thiolase, C-terminal domain K00626,K00632,K07823 - 2.3.1.16,2.3.1.174,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003458 585.0
YYD2_k127_4143592_20 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007823 303.0
YYD2_k127_4143592_21 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 283.0
YYD2_k127_4143592_22 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000001681 263.0
YYD2_k127_4143592_23 Protein of unknown function (DUF1194) - - - 0.00000000000000000000000000000000000000000000000000000000000005247 226.0
YYD2_k127_4143592_24 17 kDa outer membrane surface antigen - - - 0.0000000000000000000000000000000000000000000000000001559 189.0
YYD2_k127_4143592_25 NMT1-like family - - - 0.000000000000000000000000000000000000000000000000004705 202.0
YYD2_k127_4143592_26 phospholipase Carboxylesterase - - - 0.000000000000000000000000000000000000000000004296 176.0
YYD2_k127_4143592_27 phenylacetic acid degradation protein K02614 - - 0.0000000000000000000000000000000000000006266 159.0
YYD2_k127_4143592_28 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000000006215 103.0
YYD2_k127_4143592_29 Protein of unknown function (DUF2783) - - - 0.000000000003915 73.0
YYD2_k127_4143592_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 565.0
YYD2_k127_4143592_30 PD-(D/E)XK nuclease superfamily - - - 0.000000000005295 67.0
YYD2_k127_4143592_32 PD-(D/E)XK nuclease superfamily - - - 0.000003188 52.0
YYD2_k127_4143592_4 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 563.0
YYD2_k127_4143592_5 Na+ dependent nucleoside transporter C-terminus K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005718 531.0
YYD2_k127_4143592_6 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000723 535.0
YYD2_k127_4143592_7 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009421 484.0
YYD2_k127_4143592_8 Mate efflux family protein K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008544 464.0
YYD2_k127_4143592_9 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 449.0
YYD2_k127_4189626_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0 1699.0
YYD2_k127_4189626_1 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1073.0
YYD2_k127_4189626_10 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005743 594.0
YYD2_k127_4189626_11 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 556.0
YYD2_k127_4189626_12 COG0303 Molybdopterin biosynthesis enzyme K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 536.0
YYD2_k127_4189626_13 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 516.0
YYD2_k127_4189626_14 Histidine kinase K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 488.0
YYD2_k127_4189626_15 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008281 454.0
YYD2_k127_4189626_16 PFAM NAD dependent epimerase dehydratase family K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 436.0
YYD2_k127_4189626_17 Dicarboxylate transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 446.0
YYD2_k127_4189626_18 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 413.0
YYD2_k127_4189626_19 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 374.0
YYD2_k127_4189626_2 COG0480 Translation elongation factors (GTPases) K02355 - - 1.119e-274 860.0
YYD2_k127_4189626_20 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 341.0
YYD2_k127_4189626_21 HpcH/HpaI aldolase/citrate lyase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 339.0
YYD2_k127_4189626_22 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 320.0
YYD2_k127_4189626_23 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 324.0
YYD2_k127_4189626_24 Ketopantoate reductase PanE/ApbA C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 315.0
YYD2_k127_4189626_25 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 306.0
YYD2_k127_4189626_26 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 294.0
YYD2_k127_4189626_27 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004897 286.0
YYD2_k127_4189626_28 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000474 264.0
YYD2_k127_4189626_29 COG0314 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000000001591 235.0
YYD2_k127_4189626_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 6.911e-272 852.0
YYD2_k127_4189626_30 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.00000000000000000000000000000000000000000000000000000000000000000006824 237.0
YYD2_k127_4189626_31 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000000000001138 232.0
YYD2_k127_4189626_32 transcriptional - - - 0.0000000000000000000000000000000000000000000000000000000000005218 214.0
YYD2_k127_4189626_33 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000000008308 193.0
YYD2_k127_4189626_34 Protein of unknown function (DUF429) - - - 0.0000000000000000000000000000000000000000000000000003798 194.0
YYD2_k127_4189626_35 Putative tRNA binding domain K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000001107 182.0
YYD2_k127_4189626_36 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.00000000000000000000000000000000000000000000000002264 189.0
YYD2_k127_4189626_37 Sortase family K07284 - 3.4.22.70 0.00000000000000000000000000000000000000000007013 179.0
YYD2_k127_4189626_38 Protein of unknown function (DUF1244) K09948 - - 0.000000000000000000000000000000000000000003963 156.0
YYD2_k127_4189626_39 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000001181 155.0
YYD2_k127_4189626_4 oligoendopeptidase F K08602 - - 6.845e-270 843.0
YYD2_k127_4189626_40 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000004 147.0
YYD2_k127_4189626_41 High-affinity nickel-transport protein K08970 - - 0.0000000000000000000000000000000000001542 156.0
YYD2_k127_4189626_42 Protein of unknown function (DUF1318) - - - 0.0000000000000000000000000000000000007644 144.0
YYD2_k127_4189626_43 Cytochrome P460 - - - 0.000000000000000000000000000000000005943 143.0
YYD2_k127_4189626_44 Domain of unknown function (DUF305) - - - 0.0000000000000000000000000000002755 130.0
YYD2_k127_4189626_45 transport system, periplasmic component - - - 0.000000000000000000000000000003997 127.0
YYD2_k127_4189626_46 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000005433 123.0
YYD2_k127_4189626_47 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.000000000000000000000000006478 119.0
YYD2_k127_4189626_48 Stf0 sulphotransferase - - - 0.00000000000000000000000001392 122.0
YYD2_k127_4189626_49 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.0000000000000000000000001206 108.0
YYD2_k127_4189626_5 ABC1 family - - - 3.743e-212 667.0
YYD2_k127_4189626_50 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000004265 112.0
YYD2_k127_4189626_52 Alanine dehydrogenase/PNT, N-terminal domain K00324 GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.6.1.2 0.0000000002079 64.0
YYD2_k127_4189626_54 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0003772 48.0
YYD2_k127_4189626_6 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.537e-210 662.0
YYD2_k127_4189626_7 Aminotransferase K00812 - 2.6.1.1 2.77e-210 662.0
YYD2_k127_4189626_8 chorismate binding enzyme K13503 - 4.1.3.27 7.723e-209 673.0
YYD2_k127_4189626_9 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 1.932e-207 661.0
YYD2_k127_4193720_0 Potassium transporter peripheral membrane component K03499 - - 2.167e-203 642.0
YYD2_k127_4193720_1 Amino-transferase class IV K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 369.0
YYD2_k127_4193720_2 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000007396 244.0
YYD2_k127_4193720_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 0.000000000000000000000000000000000000000000001737 166.0
YYD2_k127_4193720_4 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000000001381 150.0
YYD2_k127_4198288_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1281.0
YYD2_k127_4198288_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 5.485e-238 740.0
YYD2_k127_4198288_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 557.0
YYD2_k127_4198288_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 348.0
YYD2_k127_4225057_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006358 514.0
YYD2_k127_4225057_1 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 359.0
YYD2_k127_4285724_0 lipopolysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 312.0
YYD2_k127_4285724_1 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002928 252.0
YYD2_k127_4285724_2 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000002524 165.0
YYD2_k127_4285724_3 Pkd domain containing protein - - - 0.000000001257 72.0
YYD2_k127_4291477_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 522.0
YYD2_k127_4291477_1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007739 353.0
YYD2_k127_4291477_10 - - - - 0.00000001102 66.0
YYD2_k127_4291477_2 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003376 281.0
YYD2_k127_4291477_3 sulfuric ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002017 273.0
YYD2_k127_4291477_4 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000033 248.0
YYD2_k127_4291477_5 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000005297 237.0
YYD2_k127_4291477_6 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.000000000000000000000000000000000000000000000005837 182.0
YYD2_k127_4291477_7 6-pyruvoyl tetrahydropterin synthase - - - 0.000000000000000000000000000000000000000000000009317 174.0
YYD2_k127_4291477_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.00000000000000000000000000000000000000000003269 172.0
YYD2_k127_4291477_9 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000009434 158.0
YYD2_k127_4320440_0 Protein of unknown function (DUF3141) - - - 6.399e-287 899.0
YYD2_k127_4320440_1 Predicted Permease Membrane Region K07085 - - 4.657e-272 848.0
YYD2_k127_4320440_10 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 421.0
YYD2_k127_4320440_11 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 402.0
YYD2_k127_4320440_12 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 400.0
YYD2_k127_4320440_13 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 390.0
YYD2_k127_4320440_14 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 380.0
YYD2_k127_4320440_15 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 359.0
YYD2_k127_4320440_16 ABC transporter, phosphonate, periplasmic substrate-binding protein K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 344.0
YYD2_k127_4320440_17 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 313.0
YYD2_k127_4320440_18 mandelate racemase muconate lactonizing K01684 - 4.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 325.0
YYD2_k127_4320440_19 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 310.0
YYD2_k127_4320440_2 Thiamine pyrophosphate enzyme, central domain - - - 1.219e-249 791.0
YYD2_k127_4320440_20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 302.0
YYD2_k127_4320440_21 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001159 284.0
YYD2_k127_4320440_22 C4-dicarboxylate ABC transporter substrate-binding protein K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001566 282.0
YYD2_k127_4320440_23 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001782 274.0
YYD2_k127_4320440_24 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001785 266.0
YYD2_k127_4320440_25 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001555 258.0
YYD2_k127_4320440_26 Short-chain dehydrogenase reductase SDR K00059,K18337 - 1.1.1.100,1.1.1.173,1.1.1.377,1.1.1.378 0.000000000000000000000000000000000000000000000000000000000000000004324 233.0
YYD2_k127_4320440_27 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000000001689 202.0
YYD2_k127_4320440_28 IMP dehydrogenase activity - - - 0.0000000000000000000000000000000000000000008043 160.0
YYD2_k127_4320440_29 IMP dehydrogenase activity - - - 0.0000000000000000000000000000000000000002542 154.0
YYD2_k127_4320440_3 PFAM Xanthine uracil vitamin C permease K02824 - - 9.445e-195 615.0
YYD2_k127_4320440_30 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.000000000000000000000000000000000005176 144.0
YYD2_k127_4320440_31 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000005314 100.0
YYD2_k127_4320440_32 - - - - 0.000000000000002592 86.0
YYD2_k127_4320440_33 Protein conserved in bacteria - - - 0.00000000000004883 85.0
YYD2_k127_4320440_34 - - - - 0.000001063 55.0
YYD2_k127_4320440_4 (ABC) transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 604.0
YYD2_k127_4320440_5 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 564.0
YYD2_k127_4320440_6 Methionine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004975 522.0
YYD2_k127_4320440_7 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 501.0
YYD2_k127_4320440_8 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 460.0
YYD2_k127_4320440_9 Phosphate acetyl/butaryl transferase K00625,K00634 - 2.3.1.19,2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 439.0
YYD2_k127_4367274_0 Phosphate transport system permease K02038 - - 6.813e-236 751.0
YYD2_k127_4367274_1 transport system permease component K02037 - - 8.259e-205 647.0
YYD2_k127_4367274_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 426.0
YYD2_k127_4367274_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008099 353.0
YYD2_k127_4367274_4 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 323.0
YYD2_k127_4378559_0 Adenylate cyclase - - - 1.023e-243 767.0
YYD2_k127_4378559_1 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 433.0
YYD2_k127_4378559_2 phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 361.0
YYD2_k127_4378559_3 Bacterial regulatory proteins, crp family K10914 - - 0.0000004024 52.0
YYD2_k127_4379675_0 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.0 1369.0
YYD2_k127_4379675_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 514.0
YYD2_k127_4379675_10 Thioesterase superfamily K01075 - 3.1.2.23 0.00000000000000000000000000000006431 132.0
YYD2_k127_4379675_11 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000002908 100.0
YYD2_k127_4379675_12 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000004836 73.0
YYD2_k127_4379675_2 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 511.0
YYD2_k127_4379675_3 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006636 425.0
YYD2_k127_4379675_4 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 330.0
YYD2_k127_4379675_5 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000000000000000000000000000000000000002664 218.0
YYD2_k127_4379675_6 Domain of unknown function (DUF4863) - - - 0.0000000000000000000000000000000000000000000000000000000007547 206.0
YYD2_k127_4379675_7 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000271 199.0
YYD2_k127_4379675_8 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000009575 153.0
YYD2_k127_4379675_9 Thioesterase - - - 0.000000000000000000000000000000000000004796 150.0
YYD2_k127_4404255_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1189.0
YYD2_k127_4404255_1 Belongs to the ClpA ClpB family K03694 - - 0.0 1150.0
YYD2_k127_4404255_10 phosphomannomutase K01840 - 5.4.2.8 1.899e-198 633.0
YYD2_k127_4404255_11 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 610.0
YYD2_k127_4404255_12 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 547.0
YYD2_k127_4404255_13 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 492.0
YYD2_k127_4404255_14 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004366 497.0
YYD2_k127_4404255_15 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 456.0
YYD2_k127_4404255_16 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 433.0
YYD2_k127_4404255_17 COG0119 Isopropylmalate homocitrate citramalate synthases K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006764 426.0
YYD2_k127_4404255_18 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 408.0
YYD2_k127_4404255_19 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 394.0
YYD2_k127_4404255_2 malic enzyme K00029 - 1.1.1.40 0.0 1019.0
YYD2_k127_4404255_20 N-terminal domain of oxidoreductase K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 385.0
YYD2_k127_4404255_21 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 383.0
YYD2_k127_4404255_22 ornithine cyclodeaminase activity K01750,K18258,K19244 - 1.4.1.1,1.5.1.25,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 340.0
YYD2_k127_4404255_23 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077 325.0
YYD2_k127_4404255_24 Belongs to the peptidase S11 family K01286 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 330.0
YYD2_k127_4404255_25 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004401 309.0
YYD2_k127_4404255_26 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 299.0
YYD2_k127_4404255_27 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002819 264.0
YYD2_k127_4404255_28 DSBA-like thioredoxin domain K14584 - 5.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000745 230.0
YYD2_k127_4404255_29 2-hydroxychromene-2-carboxylate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000005141 223.0
YYD2_k127_4404255_3 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 3.051e-293 906.0
YYD2_k127_4404255_30 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000008102 214.0
YYD2_k127_4404255_31 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000000000001758 205.0
YYD2_k127_4404255_32 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000000000000006652 202.0
YYD2_k127_4404255_33 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000000000000000000003819 195.0
YYD2_k127_4404255_34 monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000006566 184.0
YYD2_k127_4404255_35 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000000000000000243 182.0
YYD2_k127_4404255_36 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000004052 187.0
YYD2_k127_4404255_37 Cupin domain - - - 0.0000000000000000000000000000000000000000000000001976 184.0
YYD2_k127_4404255_38 translation initiation inhibitor - - - 0.0000000000000000000000000000000000000000000008858 171.0
YYD2_k127_4404255_39 - - - - 0.000000000000000000000000000000000000000004572 166.0
YYD2_k127_4404255_4 Biotin carboxylase C-terminal domain K01965,K01968,K13777 - 6.4.1.3,6.4.1.4,6.4.1.5 7.961e-279 872.0
YYD2_k127_4404255_40 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000000001941 165.0
YYD2_k127_4404255_41 Protein of unknown function (DUF1489) - - - 0.0000000000000000000000000000000000000001548 155.0
YYD2_k127_4404255_42 Phasin protein - - - 0.000000000000000000000000000000000000005151 150.0
YYD2_k127_4404255_43 - - - - 0.000000000000000000000000000008293 123.0
YYD2_k127_4404255_44 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.0000000000000000000004346 102.0
YYD2_k127_4404255_45 transport - - - 0.00000000000000000004929 98.0
YYD2_k127_4404255_46 Protein conserved in bacteria K09984 - - 0.000000000000000003731 94.0
YYD2_k127_4404255_47 Domain of unknown function (DUF4114) - - - 0.000000000000003152 83.0
YYD2_k127_4404255_48 - K01611 - 4.1.1.50 0.00000000001561 69.0
YYD2_k127_4404255_49 Sel1-like repeats. K13582 - - 0.000001196 59.0
YYD2_k127_4404255_5 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01895 - 6.2.1.1 2.424e-241 758.0
YYD2_k127_4404255_6 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 2.814e-233 728.0
YYD2_k127_4404255_7 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 8.547e-222 694.0
YYD2_k127_4404255_8 Aldehyde dehydrogenase family - - - 5.362e-220 695.0
YYD2_k127_4404255_9 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 3.857e-215 672.0
YYD2_k127_4457375_0 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 0.0 1165.0
YYD2_k127_4457375_1 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 441.0
YYD2_k127_4457375_2 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 305.0
YYD2_k127_4457375_3 transcriptional regulator K04761 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 304.0
YYD2_k127_4457375_4 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 289.0
YYD2_k127_4457375_5 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 290.0
YYD2_k127_4457375_6 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.00000000000000000000000000000000000000000000000000000000000000000007086 235.0
YYD2_k127_4457375_7 Hemimethylated DNA-binding protein YccV like K11940 - - 0.000000000000000000000000000000000000000004013 173.0
YYD2_k127_4457375_9 - - - - 0.000000000000623 73.0
YYD2_k127_4474203_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1127.0
YYD2_k127_4474203_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001022 247.0
YYD2_k127_4474203_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000001781 229.0
YYD2_k127_4474203_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000006643 82.0
YYD2_k127_4474993_0 Belongs to the GcvT family K19191 - 1.5.3.19 4.2e-322 1005.0
YYD2_k127_4474993_1 Binding-protein-dependent transport system inner membrane component K02011 - - 6.398e-218 689.0
YYD2_k127_4474993_10 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 378.0
YYD2_k127_4474993_11 Choline/ethanolamine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 360.0
YYD2_k127_4474993_12 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 360.0
YYD2_k127_4474993_13 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001699 274.0
YYD2_k127_4474993_14 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001942 268.0
YYD2_k127_4474993_15 Transcriptional regulator K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000001513 250.0
YYD2_k127_4474993_16 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000007705 199.0
YYD2_k127_4474993_17 spore germination - - - 0.00000000000000000000000000000000000000000000000000008515 197.0
YYD2_k127_4474993_18 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000000000000000000000000000002318 163.0
YYD2_k127_4474993_19 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000002779 93.0
YYD2_k127_4474993_2 Prolyl oligopeptidase family - - - 9.73e-211 677.0
YYD2_k127_4474993_20 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000009077 83.0
YYD2_k127_4474993_21 - - - - 0.000004554 52.0
YYD2_k127_4474993_3 Aminotransferase class-III K00823 - 2.6.1.19 3.45e-210 662.0
YYD2_k127_4474993_4 Aldehyde dehydrogenase family - - - 3.32e-208 659.0
YYD2_k127_4474993_5 phosphonoacetate hydrolase K19670 - 3.11.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 563.0
YYD2_k127_4474993_6 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 515.0
YYD2_k127_4474993_7 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005393 509.0
YYD2_k127_4474993_8 TOBE domain K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 464.0
YYD2_k127_4474993_9 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 414.0
YYD2_k127_4489495_0 COG0768 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 1.341e-199 638.0
YYD2_k127_4489495_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K15738 - - 1.856e-198 636.0
YYD2_k127_4489495_10 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily K15268 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 317.0
YYD2_k127_4489495_11 COG3023 Negative regulator of beta-lactamase expression K01447 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000008791 275.0
YYD2_k127_4489495_12 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000003048 158.0
YYD2_k127_4489495_13 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000005578 148.0
YYD2_k127_4489495_14 - - - - 0.000000000000000000000004653 110.0
YYD2_k127_4489495_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 3.674e-194 617.0
YYD2_k127_4489495_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 563.0
YYD2_k127_4489495_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 532.0
YYD2_k127_4489495_5 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 527.0
YYD2_k127_4489495_6 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 496.0
YYD2_k127_4489495_7 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 482.0
YYD2_k127_4489495_8 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 386.0
YYD2_k127_4489495_9 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 352.0
YYD2_k127_4549185_0 Zn-dependent protease, contains TPR repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 452.0
YYD2_k127_4590968_0 malic enzyme K00029 - 1.1.1.40 0.0 1097.0
YYD2_k127_4590968_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 618.0
YYD2_k127_4590968_2 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 494.0
YYD2_k127_4590968_3 signal transduction histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 376.0
YYD2_k127_4590968_4 transport system permease component K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 357.0
YYD2_k127_4590968_5 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000006006 226.0
YYD2_k127_4590968_6 MerR, DNA binding K08365 - - 0.00000000000000000000000000000000000000001134 158.0
YYD2_k127_4590968_7 MerT mercuric transport protein K08363 - - 0.0000000000000000000000000000000000003584 145.0
YYD2_k127_4590968_8 Membrane transport protein MerF - - - 0.0000000000000001154 86.0
YYD2_k127_4590968_9 Mercury scavenger that specifically binds to one mercury ion and which passes it to the mercuric reductase (MerA) via the MerT protein K08364 - - 0.0000000000006472 77.0
YYD2_k127_4601359_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1054.0
YYD2_k127_4601359_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 3.405e-225 702.0
YYD2_k127_4601359_10 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 413.0
YYD2_k127_4601359_11 malonyl CoA-acyl carrier protein transacylase K00645,K15327 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 407.0
YYD2_k127_4601359_12 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 404.0
YYD2_k127_4601359_13 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 399.0
YYD2_k127_4601359_14 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 393.0
YYD2_k127_4601359_15 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 387.0
YYD2_k127_4601359_16 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 384.0
YYD2_k127_4601359_17 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 380.0
YYD2_k127_4601359_18 Predicted permease YjgP/YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003964 361.0
YYD2_k127_4601359_19 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 343.0
YYD2_k127_4601359_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.567e-203 644.0
YYD2_k127_4601359_20 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 344.0
YYD2_k127_4601359_21 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 335.0
YYD2_k127_4601359_22 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 340.0
YYD2_k127_4601359_23 Chaperone SurA K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 332.0
YYD2_k127_4601359_24 TRAP-type C4-dicarboxylate transport system periplasmic component K11688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 323.0
YYD2_k127_4601359_25 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 312.0
YYD2_k127_4601359_26 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 305.0
YYD2_k127_4601359_27 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 303.0
YYD2_k127_4601359_28 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 304.0
YYD2_k127_4601359_29 CYTH - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 311.0
YYD2_k127_4601359_3 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 5.671e-201 636.0
YYD2_k127_4601359_30 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003083 274.0
YYD2_k127_4601359_31 Uncharacterized protein conserved in bacteria (DUF2066) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001091 258.0
YYD2_k127_4601359_32 COG0593 ATPase involved in DNA replication initiation - - - 0.00000000000000000000000000000000000000000000000000000000000000001149 231.0
YYD2_k127_4601359_33 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000003346 222.0
YYD2_k127_4601359_34 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000000007583 213.0
YYD2_k127_4601359_35 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000000000000000000000000000000001209 202.0
YYD2_k127_4601359_36 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000003863 190.0
YYD2_k127_4601359_37 membrane - - - 0.0000000000000000000000000000000000000000000000000001167 198.0
YYD2_k127_4601359_38 NADPH-quinone reductase (modulator of drug activity B) - - - 0.000000000000000000000000000000000000000000000001119 179.0
YYD2_k127_4601359_39 Radical SAM K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000001509 164.0
YYD2_k127_4601359_4 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 1.227e-197 630.0
YYD2_k127_4601359_40 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000002177 165.0
YYD2_k127_4601359_41 membrane protein, required for colicin V production K03558 - - 0.00000000000000000000000000000000000000001691 164.0
YYD2_k127_4601359_42 Phosphohistidine phosphatase SixA K08296 - - 0.000000000000000000000000000000000000004618 151.0
YYD2_k127_4601359_43 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000000000000000004983 140.0
YYD2_k127_4601359_44 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000004118 134.0
YYD2_k127_4601359_45 Protein of unknown function (DUF2937) - - - 0.0000000000001111 82.0
YYD2_k127_4601359_46 Flavodoxin-like fold - - - 0.0000000000002137 75.0
YYD2_k127_4601359_5 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 2.252e-197 627.0
YYD2_k127_4601359_6 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 541.0
YYD2_k127_4601359_7 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006667 513.0
YYD2_k127_4601359_8 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 487.0
YYD2_k127_4601359_9 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 476.0
YYD2_k127_4647871_0 DNA polymerase K02337 - 2.7.7.7 0.0 1479.0
YYD2_k127_4647871_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 3.023e-271 844.0
YYD2_k127_4647871_10 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004219 273.0
YYD2_k127_4647871_11 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000002059 276.0
YYD2_k127_4647871_12 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003531 265.0
YYD2_k127_4647871_13 COG0346 Lactoylglutathione lyase and related lyases K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000208 236.0
YYD2_k127_4647871_14 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000000000000000000000000000000000000000000000000006526 260.0
YYD2_k127_4647871_15 Protein of unknown function (DUF1467) - - - 0.00000000000000000000002263 103.0
YYD2_k127_4647871_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 3.157e-238 745.0
YYD2_k127_4647871_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 3.302e-216 691.0
YYD2_k127_4647871_4 hydrolase of the metallo-beta-lactamase superfamily K12574 - - 1.119e-205 661.0
YYD2_k127_4647871_5 Permease family K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 595.0
YYD2_k127_4647871_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 596.0
YYD2_k127_4647871_7 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 558.0
YYD2_k127_4647871_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 374.0
YYD2_k127_4647871_9 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 304.0
YYD2_k127_46810_0 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 533.0
YYD2_k127_46810_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 497.0
YYD2_k127_4683861_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1289.0
YYD2_k127_4683861_1 transport system fused permease components - - - 0.0 1096.0
YYD2_k127_4683861_10 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 497.0
YYD2_k127_4683861_11 Alcohol dehydrogenase GroES-like domain K00098 - 1.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 443.0
YYD2_k127_4683861_12 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007231 434.0
YYD2_k127_4683861_13 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 430.0
YYD2_k127_4683861_14 Methyltransferase K06968 - 2.1.1.186 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007374 422.0
YYD2_k127_4683861_15 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009467 411.0
YYD2_k127_4683861_16 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 400.0
YYD2_k127_4683861_17 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 361.0
YYD2_k127_4683861_18 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 349.0
YYD2_k127_4683861_19 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 328.0
YYD2_k127_4683861_2 CoA binding domain - - - 0.0 1078.0
YYD2_k127_4683861_20 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 304.0
YYD2_k127_4683861_21 Dihydrodipicolinate synthetase family K13876 - 4.2.1.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 305.0
YYD2_k127_4683861_22 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 241.0
YYD2_k127_4683861_23 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000004865 228.0
YYD2_k127_4683861_24 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000001352 216.0
YYD2_k127_4683861_25 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000002499 226.0
YYD2_k127_4683861_26 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000000000000000001124 176.0
YYD2_k127_4683861_27 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000003804 172.0
YYD2_k127_4683861_28 transcriptional regulator - - - 0.0000000000000000000000000000000003493 138.0
YYD2_k127_4683861_29 transcriptional regulators K22042 - - 0.000000000000000000000000000006971 122.0
YYD2_k127_4683861_3 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain K13482 - 1.17.1.4 1.102e-298 933.0
YYD2_k127_4683861_30 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000000003149 112.0
YYD2_k127_4683861_31 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000116 84.0
YYD2_k127_4683861_4 Belongs to the TPP enzyme family K01652 - 2.2.1.6 8.506e-279 870.0
YYD2_k127_4683861_5 Tripartite tricarboxylate transporter TctA family K07793 - - 3.244e-250 783.0
YYD2_k127_4683861_6 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 1.505e-202 639.0
YYD2_k127_4683861_7 CoA-transferase family III K07544,K07749 - 2.8.3.15,2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 608.0
YYD2_k127_4683861_8 Xanthine dehydrogenase iron-sulfur cluster and FAD-binding subunit A K13481 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 529.0
YYD2_k127_4683861_9 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 502.0
YYD2_k127_4714253_0 Polysaccharide biosynthesis protein K13013 - - 2.852e-224 712.0
YYD2_k127_4714253_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.03e-211 667.0
YYD2_k127_4714253_2 Transposase DDE domain - - - 0.00000000000000000000000000004053 119.0
YYD2_k127_4714253_3 Transposase DDE domain group 1 - - - 0.000000009502 60.0
YYD2_k127_47163_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 505.0
YYD2_k127_47163_1 MotA TolQ ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 445.0
YYD2_k127_47163_2 lysine 2,3-aminomutase K01843 - 5.4.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701 413.0
YYD2_k127_47163_3 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 372.0
YYD2_k127_47163_4 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007945 286.0
YYD2_k127_47163_5 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000682 244.0
YYD2_k127_47163_6 flagellar motor protein K02557 - - 0.00000000000000000000000000000000001346 145.0
YYD2_k127_47163_7 COG2885 outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.0000000000000000007517 99.0
YYD2_k127_47316_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 2.282e-230 726.0
YYD2_k127_47316_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 556.0
YYD2_k127_47316_10 PRC-barrel domain - - - 0.0000000000000000003985 96.0
YYD2_k127_47316_2 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008355 398.0
YYD2_k127_47316_3 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 373.0
YYD2_k127_47316_4 NAD-dependent epimerase dehydratase K01784,K08678,K12454 - 4.1.1.35,5.1.3.10,5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 365.0
YYD2_k127_47316_5 C-terminal domain of 1-Cys peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 349.0
YYD2_k127_47316_6 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001012 279.0
YYD2_k127_47316_7 Sirohaem biosynthesis protein central K02304 - 1.3.1.76,4.99.1.4 0.00000000000000000000000000000000000000000000004362 176.0
YYD2_k127_47316_8 Aminoglycoside 3-N-acetyltransferase - - - 0.000000000000000000000000000818 125.0
YYD2_k127_47316_9 Parallel beta-helix repeats - - - 0.0000000000000000000000001847 121.0
YYD2_k127_4759548_0 Thiol disulfide interchange protein K04084,K08344 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 586.0
YYD2_k127_4759548_1 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002194 260.0
YYD2_k127_4759548_2 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000002057 160.0
YYD2_k127_4774009_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 5.217e-251 782.0
YYD2_k127_4774009_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 5.615e-229 725.0
YYD2_k127_4774009_10 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002297 241.0
YYD2_k127_4774009_11 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000006118 217.0
YYD2_k127_4774009_12 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000000000003567 205.0
YYD2_k127_4774009_13 Transcriptional regulator K09017 - - 0.00000000000000000000000000000000000000000000000000002483 196.0
YYD2_k127_4774009_14 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000008355 192.0
YYD2_k127_4774009_15 - - - - 0.0000000000000000000000000000000000000000000000004503 183.0
YYD2_k127_4774009_16 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000001447 154.0
YYD2_k127_4774009_17 - - - - 0.0000000000000000000000000001893 121.0
YYD2_k127_4774009_18 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000004458 113.0
YYD2_k127_4774009_19 COG0517 FOG CBS domain - - - 0.00000000000000000005969 91.0
YYD2_k127_4774009_2 COG1960 Acyl-CoA dehydrogenases K19966 - 3.13.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 553.0
YYD2_k127_4774009_20 - K07341 - - 0.00000000000000002572 85.0
YYD2_k127_4774009_21 - - - - 0.0003834 46.0
YYD2_k127_4774009_3 acyl-CoA transferases carnitine dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 537.0
YYD2_k127_4774009_4 PFAM Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 537.0
YYD2_k127_4774009_5 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007591 512.0
YYD2_k127_4774009_6 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 442.0
YYD2_k127_4774009_7 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 417.0
YYD2_k127_4774009_8 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006449 325.0
YYD2_k127_4774009_9 HlyD family K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001673 258.0
YYD2_k127_4777270_0 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 588.0
YYD2_k127_4777270_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 561.0
YYD2_k127_4777270_2 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 392.0
YYD2_k127_4777270_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007857 357.0
YYD2_k127_4777270_4 Glycosyltransferase family 10 (fucosyltransferase) C-term - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007163 352.0
YYD2_k127_4777270_5 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 301.0
YYD2_k127_4777270_6 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.00000000000000000000000000000000000000000000000000000004656 201.0
YYD2_k127_4777270_7 transcriptional regulator - - - 0.000000000000000000000000000000000009685 141.0
YYD2_k127_4777270_8 - - - - 0.00000000000000000000000002693 117.0
YYD2_k127_4777270_9 S4 RNA-binding domain K06178 - 5.4.99.22 0.00000000009301 63.0
YYD2_k127_490021_0 argininosuccinate lyase K01755 - 4.3.2.1 7.558e-197 624.0
YYD2_k127_490021_1 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009779 281.0
YYD2_k127_490021_2 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000002145 177.0
YYD2_k127_490021_3 - - - - 0.00000000000000000000000000000000000000000000911 168.0
YYD2_k127_490021_4 SCO1/SenC K07152 - - 0.00000000000000000000000000000000000001732 154.0
YYD2_k127_490021_5 - - - - 0.00000000000000000000000000000000000001856 151.0
YYD2_k127_490021_6 Glycosyl transferase, family 2 K00786 - - 0.0000000000000000000000000000000000009765 145.0
YYD2_k127_490021_7 cytochrome K08738 - - 0.0000000000000000000000003039 109.0
YYD2_k127_490021_8 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.0000000000000000003859 97.0
YYD2_k127_4910817_0 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000003727 260.0
YYD2_k127_4910817_1 - - - - 0.0000000000000000000000000000000000000000000000009858 195.0
YYD2_k127_4910817_2 - - - - 0.0001808 48.0
YYD2_k127_4910817_3 Abc transporter K11004 - - 0.0002547 45.0
YYD2_k127_4914424_0 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.0 1430.0
YYD2_k127_4914424_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 2.058e-284 891.0
YYD2_k127_4914424_10 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 405.0
YYD2_k127_4914424_11 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 366.0
YYD2_k127_4914424_12 Phage integrase, N-terminal SAM-like domain K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 373.0
YYD2_k127_4914424_13 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 342.0
YYD2_k127_4914424_14 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000000000005956 238.0
YYD2_k127_4914424_15 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000000000000009948 224.0
YYD2_k127_4914424_16 COG4942 Membrane-bound metallopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000008268 243.0
YYD2_k127_4914424_17 protein conserved in bacteria K09798 - - 0.00000000000000000000000000000000000000000000000000000000000013 228.0
YYD2_k127_4914424_18 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000009773 206.0
YYD2_k127_4914424_19 protein conserved in bacteria K09921 - - 0.000000000000000000000000000000000000000000000000000000007495 224.0
YYD2_k127_4914424_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 6.282e-275 851.0
YYD2_k127_4914424_20 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000004731 175.0
YYD2_k127_4914424_21 Exopolysaccharide synthesis, ExoD - - - 0.000000000000000000000000000000000000000000001512 172.0
YYD2_k127_4914424_22 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000003619 159.0
YYD2_k127_4914424_23 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000008231 152.0
YYD2_k127_4914424_24 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000006402 153.0
YYD2_k127_4914424_25 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000001466 112.0
YYD2_k127_4914424_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 6.043e-273 843.0
YYD2_k127_4914424_4 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 3.327e-208 657.0
YYD2_k127_4914424_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 583.0
YYD2_k127_4914424_6 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007442 541.0
YYD2_k127_4914424_7 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 505.0
YYD2_k127_4914424_8 Alpha beta hydrolase K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005142 494.0
YYD2_k127_4914424_9 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 485.0
YYD2_k127_4941917_0 HELICc2 K03722 - 3.6.4.12 6.945e-310 964.0
YYD2_k127_4941917_1 TRAP transporter, 4TM 12TM fusion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 596.0
YYD2_k127_4941917_2 4,5-dihydroxyphthalate decarboxylase K04102 - 4.1.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 404.0
YYD2_k127_4941917_3 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 300.0
YYD2_k127_4941917_4 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000000000000000000000000000001111 234.0
YYD2_k127_4941917_5 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000002084 131.0
YYD2_k127_4941917_6 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000002767 108.0
YYD2_k127_4941917_7 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000004255 90.0
YYD2_k127_4954770_0 Histidine kinase-like ATPases - - - 0.0 1511.0
YYD2_k127_4954770_1 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K03520 - 1.2.5.3 0.0 1425.0
YYD2_k127_4954770_10 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003874 250.0
YYD2_k127_4954770_11 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000128 228.0
YYD2_k127_4954770_12 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000003301 232.0
YYD2_k127_4954770_13 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000002238 201.0
YYD2_k127_4954770_14 cheY-homologous receiver domain K11443 - - 0.0000000000000000000000000000000000000000000000000000005515 200.0
YYD2_k127_4954770_15 PFAM RNA binding S1 domain protein K08301 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008996,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 - 0.0000000000000000000000000000000000000000000009069 182.0
YYD2_k127_4954770_16 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000001603 139.0
YYD2_k127_4954770_17 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000004829 69.0
YYD2_k127_4954770_18 - - - - 0.000003373 51.0
YYD2_k127_4954770_19 CO dehydrogenase flavoprotein C-terminal domain K04109,K11178 - 1.17.1.4,1.3.7.9 0.00003522 46.0
YYD2_k127_4954770_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 463.0
YYD2_k127_4954770_3 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 451.0
YYD2_k127_4954770_4 VWA domain containing CoxE-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 439.0
YYD2_k127_4954770_5 COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 364.0
YYD2_k127_4954770_6 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007563 324.0
YYD2_k127_4954770_7 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 285.0
YYD2_k127_4954770_8 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001204 259.0
YYD2_k127_4954770_9 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002308 258.0
YYD2_k127_4955682_0 COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases K02230 - 6.6.1.2 0.0 1470.0
YYD2_k127_4955682_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 617.0
YYD2_k127_4955682_10 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 354.0
YYD2_k127_4955682_11 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005692 362.0
YYD2_k127_4955682_12 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 342.0
YYD2_k127_4955682_13 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 343.0
YYD2_k127_4955682_14 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 315.0
YYD2_k127_4955682_15 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008106 315.0
YYD2_k127_4955682_16 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 303.0
YYD2_k127_4955682_17 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008245 268.0
YYD2_k127_4955682_18 PFAM Response regulator receiver domain K15012 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000003452 252.0
YYD2_k127_4955682_19 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD2_k127_4955682_2 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 603.0
YYD2_k127_4955682_20 FecR protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000002859 254.0
YYD2_k127_4955682_21 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000001032 226.0
YYD2_k127_4955682_22 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000000000000000002321 230.0
YYD2_k127_4955682_23 Belongs to the DegT DnrJ EryC1 family K05957 - 2.6.1.50 0.000000000000000000000000000000000000000000000000000000000006827 214.0
YYD2_k127_4955682_24 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.0000000000000000000000000000000000000000000000000000004889 199.0
YYD2_k127_4955682_25 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000004292 216.0
YYD2_k127_4955682_26 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.0000000000000000000000000000000000000000000000000006841 195.0
YYD2_k127_4955682_27 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.00000000000000000000000000000000000000000000000004354 189.0
YYD2_k127_4955682_28 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000008704 180.0
YYD2_k127_4955682_29 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000004066 169.0
YYD2_k127_4955682_3 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007393 567.0
YYD2_k127_4955682_30 - - - - 0.000000000000000000000000000000006403 132.0
YYD2_k127_4955682_31 Methyltransferase domain - - - 0.00000000000000000000000000000002571 142.0
YYD2_k127_4955682_32 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00433,K01055 - 1.11.1.10,3.1.1.24 0.00000000000000000000000000000004345 134.0
YYD2_k127_4955682_33 DNA repair protein MmcB-like - - - 0.0000000000000000000000000000006227 137.0
YYD2_k127_4955682_34 - - - - 0.0000000000000000000000000002739 122.0
YYD2_k127_4955682_35 PFAM polysaccharide biosynthesis protein - - - 0.00000000000000000000000911 116.0
YYD2_k127_4955682_36 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.0000000000000004077 91.0
YYD2_k127_4955682_37 Psort location Extracellular, score - - - 0.0000000000000008186 84.0
YYD2_k127_4955682_38 Type III secretion system lipoprotein chaperone (YscW) K09914 - - 0.0000003694 62.0
YYD2_k127_4955682_39 - - - - 0.000047 50.0
YYD2_k127_4955682_4 RmlD substrate binding domain K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 537.0
YYD2_k127_4955682_5 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004485 487.0
YYD2_k127_4955682_6 Cobalamin synthesis protein cobW C-terminal domain K02234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 458.0
YYD2_k127_4955682_7 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 433.0
YYD2_k127_4955682_8 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606,K20997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 380.0
YYD2_k127_4955682_9 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006089 363.0
YYD2_k127_4982382_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 3.928e-250 791.0
YYD2_k127_4982382_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 603.0
YYD2_k127_4982382_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305 591.0
YYD2_k127_4982382_3 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 561.0
YYD2_k127_4982382_4 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 422.0
YYD2_k127_4982382_5 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 359.0
YYD2_k127_4982382_6 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 362.0
YYD2_k127_4982382_7 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 350.0
YYD2_k127_4982382_8 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 307.0
YYD2_k127_4982382_9 Cell division protein FtsQ K03589 - - 0.00000000000000000000000000000000000000000000000000000000000000002036 233.0
YYD2_k127_5001416_0 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002424 577.0
YYD2_k127_5001416_1 COG0845 Membrane-fusion protein K16300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 364.0
YYD2_k127_5001416_2 ABC transporter transmembrane region K12536,K16299 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 310.0
YYD2_k127_5027364_0 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 573.0
YYD2_k127_5027364_1 Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations K01241 - 3.2.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 561.0
YYD2_k127_5027364_10 PFAM binding-protein-dependent transport systems inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000671 239.0
YYD2_k127_5027364_11 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.0000000000000000000000000000000000000000000000051 190.0
YYD2_k127_5027364_12 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000004616 99.0
YYD2_k127_5027364_2 Glutathione S-Transferase K07393 - 1.8.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000089 453.0
YYD2_k127_5027364_3 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 445.0
YYD2_k127_5027364_4 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 361.0
YYD2_k127_5027364_5 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 349.0
YYD2_k127_5027364_6 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 312.0
YYD2_k127_5027364_7 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007863 313.0
YYD2_k127_5027364_8 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 286.0
YYD2_k127_5027364_9 Alpha beta hydrolase K01055 - 3.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000481 271.0
YYD2_k127_5045474_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.27e-278 870.0
YYD2_k127_5045474_1 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 6.637e-241 754.0
YYD2_k127_5045474_10 of the double-stranded beta helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001308 273.0
YYD2_k127_5045474_11 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000003258 229.0
YYD2_k127_5045474_12 Protein of unknown function, DUF599 - - - 0.0000000000000000000000000000000000000000000000000000000002944 212.0
YYD2_k127_5045474_13 Haem-degrading - - - 0.000000000000000000000000000000000000000002692 160.0
YYD2_k127_5045474_14 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000008381 113.0
YYD2_k127_5045474_15 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.0000000000000003526 80.0
YYD2_k127_5045474_2 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 1.926e-224 704.0
YYD2_k127_5045474_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 1.295e-218 691.0
YYD2_k127_5045474_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 1.888e-197 625.0
YYD2_k127_5045474_5 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006769 593.0
YYD2_k127_5045474_6 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 570.0
YYD2_k127_5045474_7 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 509.0
YYD2_k127_5045474_8 Cys/Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 470.0
YYD2_k127_5045474_9 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007099 342.0
YYD2_k127_5045500_0 DEAD/H associated K03724 - - 0.0 1096.0
YYD2_k127_5045500_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 3.727e-232 732.0
YYD2_k127_5045500_10 Acetamidase/Formamidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 564.0
YYD2_k127_5045500_11 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005269 573.0
YYD2_k127_5045500_12 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 562.0
YYD2_k127_5045500_13 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 539.0
YYD2_k127_5045500_14 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00758 - 2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 533.0
YYD2_k127_5045500_15 Metalloenzyme superfamily K01839 - 5.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 531.0
YYD2_k127_5045500_16 COG2309 Leucyl aminopeptidase (aminopeptidase T) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 521.0
YYD2_k127_5045500_17 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 514.0
YYD2_k127_5045500_18 Peptidase family M20/M25/M40 K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009228 511.0
YYD2_k127_5045500_19 Pirin K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 496.0
YYD2_k127_5045500_2 transport systems, ATPase components K02056 - 3.6.3.17 4.585e-214 684.0
YYD2_k127_5045500_20 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009553 491.0
YYD2_k127_5045500_21 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 502.0
YYD2_k127_5045500_22 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005657 492.0
YYD2_k127_5045500_23 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 488.0
YYD2_k127_5045500_24 Putative sugar-binding N-terminal domain K21948 - 2.7.1.217 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 483.0
YYD2_k127_5045500_25 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 471.0
YYD2_k127_5045500_26 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 467.0
YYD2_k127_5045500_27 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 464.0
YYD2_k127_5045500_28 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004054 460.0
YYD2_k127_5045500_29 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 465.0
YYD2_k127_5045500_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.441e-198 627.0
YYD2_k127_5045500_30 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005257 459.0
YYD2_k127_5045500_31 Pyridoxal-phosphate dependent enzyme K01751 - 4.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 459.0
YYD2_k127_5045500_32 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 445.0
YYD2_k127_5045500_33 Dihydrodipicolinate synthetase family K01707 - 4.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 425.0
YYD2_k127_5045500_34 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 422.0
YYD2_k127_5045500_35 SMP-30/Gluconolaconase/LRE-like region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 417.0
YYD2_k127_5045500_36 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase K01826 - 5.3.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 407.0
YYD2_k127_5045500_37 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 402.0
YYD2_k127_5045500_38 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 400.0
YYD2_k127_5045500_39 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 406.0
YYD2_k127_5045500_4 Histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 606.0
YYD2_k127_5045500_40 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 389.0
YYD2_k127_5045500_41 Glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006829 384.0
YYD2_k127_5045500_42 3-beta hydroxysteroid dehydrogenase/isomerase family K18981 - 1.1.1.203 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 374.0
YYD2_k127_5045500_43 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 379.0
YYD2_k127_5045500_44 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 348.0
YYD2_k127_5045500_45 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 334.0
YYD2_k127_5045500_46 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004584 316.0
YYD2_k127_5045500_47 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 306.0
YYD2_k127_5045500_48 Isochorismatase family K08281 - 3.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 301.0
YYD2_k127_5045500_49 Lysophospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 297.0
YYD2_k127_5045500_5 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 599.0
YYD2_k127_5045500_50 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000191 292.0
YYD2_k127_5045500_51 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002986 287.0
YYD2_k127_5045500_52 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001559 281.0
YYD2_k127_5045500_53 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003561 280.0
YYD2_k127_5045500_54 Class II Aldolase and Adducin N-terminal domain K22130 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0019321,GO:0019323,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0071704,GO:1901575 4.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004807 275.0
YYD2_k127_5045500_55 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000281 275.0
YYD2_k127_5045500_56 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001001 274.0
YYD2_k127_5045500_57 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001099 275.0
YYD2_k127_5045500_58 Calcineurin-like phosphoesterase K06953 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002449 261.0
YYD2_k127_5045500_59 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000004842 256.0
YYD2_k127_5045500_6 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 582.0
YYD2_k127_5045500_60 PFAM Methyltransferase type - - - 0.0000000000000000000000000000000000000000000000000000000000000000006249 240.0
YYD2_k127_5045500_61 PFAM YdjC family protein K03478 - 3.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000007266 238.0
YYD2_k127_5045500_62 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000004978 225.0
YYD2_k127_5045500_63 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.00000000000000000000000000000000000000000000000001019 186.0
YYD2_k127_5045500_64 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000000000000000000000000000000000000000000000002105 179.0
YYD2_k127_5045500_65 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000005714 180.0
YYD2_k127_5045500_66 Transcriptional regulator - - - 0.0000000000000000000000000000000004064 136.0
YYD2_k127_5045500_68 Restriction endonuclease - - - 0.0000000000000000000000002 113.0
YYD2_k127_5045500_69 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000003454 98.0
YYD2_k127_5045500_7 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 585.0
YYD2_k127_5045500_70 GtrA-like protein - - - 0.000000000000000000001174 100.0
YYD2_k127_5045500_71 - - - - 0.00000000003807 72.0
YYD2_k127_5045500_72 - - - - 0.0000000272 63.0
YYD2_k127_5045500_74 - - - - 0.00003829 55.0
YYD2_k127_5045500_8 Amidase, hydantoinase carbamoylase family K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 570.0
YYD2_k127_5045500_9 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 592.0
YYD2_k127_5088943_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 570.0
YYD2_k127_5088943_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 301.0
YYD2_k127_5088943_2 Survival protein SurE K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000162 262.0
YYD2_k127_5088943_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000001243 62.0
YYD2_k127_5179997_0 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008973 607.0
YYD2_k127_5179997_1 N-terminal TM domain of oligopeptide transport permease C K02034,K15582 - - 0.00000000000000000000000000000000000000000000001188 171.0
YYD2_k127_5182745_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 7.453e-306 944.0
YYD2_k127_5182745_1 Amidohydrolase family K05603 - 3.5.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 568.0
YYD2_k127_5182745_2 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 537.0
YYD2_k127_5182745_3 imidazolonepropionase activity K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 497.0
YYD2_k127_5182745_4 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051 406.0
YYD2_k127_5182745_5 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003455 381.0
YYD2_k127_5182745_6 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 304.0
YYD2_k127_5182745_7 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000003198 244.0
YYD2_k127_5183687_0 TIGRFAM addiction module antidote protein, HigA family K21498 - - 0.0000000000000000000000000000000000187 137.0
YYD2_k127_5183687_1 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.00000000000000000000000000000006005 126.0
YYD2_k127_5183687_2 HAD-hyrolase-like K01091 - 3.1.3.18 0.00000000000000004837 83.0
YYD2_k127_5183687_3 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.0000000000000004667 81.0
YYD2_k127_5187711_0 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 530.0
YYD2_k127_5187711_1 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007843 478.0
YYD2_k127_5187711_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 339.0
YYD2_k127_5187711_3 Enoyl-(Acyl carrier protein) reductase K00019,K18335 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003806 332.0
YYD2_k127_5187711_4 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 297.0
YYD2_k127_5187711_5 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 296.0
YYD2_k127_5187711_6 Cupin 2, conserved barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005137 259.0
YYD2_k127_5198089_0 heavy metal translocating P-type ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 2.711e-253 806.0
YYD2_k127_5198089_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 5.065e-207 657.0
YYD2_k127_5198089_10 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 319.0
YYD2_k127_5198089_11 Belongs to the TrpC family K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004631 315.0
YYD2_k127_5198089_12 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005716 277.0
YYD2_k127_5198089_13 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000005828 228.0
YYD2_k127_5198089_14 MerR, DNA binding K19591,K19592 - - 0.0000000000000000000000000000000000000000000000007619 179.0
YYD2_k127_5198089_15 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000001483 85.0
YYD2_k127_5198089_16 Preprotein translocase SecG subunit K03075 - - 0.0000000000000008636 81.0
YYD2_k127_5198089_17 mercury ion transmembrane transporter activity K07213 - - 0.0000000000004809 71.0
YYD2_k127_5198089_18 Histidine kinase K07636,K07654 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464 2.7.13.3 0.00000001136 61.0
YYD2_k127_5198089_2 Competence protein K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 565.0
YYD2_k127_5198089_3 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 512.0
YYD2_k127_5198089_4 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006686 492.0
YYD2_k127_5198089_5 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003638 437.0
YYD2_k127_5198089_6 TOBE domain K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 422.0
YYD2_k127_5198089_7 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 410.0
YYD2_k127_5198089_8 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 400.0
YYD2_k127_5198089_9 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 325.0
YYD2_k127_5241513_0 Belongs to the DNA photolyase family K01669 - 4.1.99.3 5.523e-196 622.0
YYD2_k127_5241513_1 NAD FAD-binding protein K06954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001049 253.0
YYD2_k127_5243417_0 Adenylate and Guanylate cyclase catalytic domain - - - 5e-324 1027.0
YYD2_k127_5243417_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.493e-224 704.0
YYD2_k127_5243417_10 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 415.0
YYD2_k127_5243417_11 HemY protein N-terminus K02498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 394.0
YYD2_k127_5243417_12 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 318.0
YYD2_k127_5243417_13 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 334.0
YYD2_k127_5243417_14 Sulfatase-modifying factor enzyme 1 K20333 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 316.0
YYD2_k127_5243417_15 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 300.0
YYD2_k127_5243417_16 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 291.0
YYD2_k127_5243417_17 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009095 289.0
YYD2_k127_5243417_18 oxidoreductase activity, acting on CH-OH group of donors - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006408 280.0
YYD2_k127_5243417_19 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001301 279.0
YYD2_k127_5243417_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 6.247e-203 636.0
YYD2_k127_5243417_20 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001819 283.0
YYD2_k127_5243417_21 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003661 268.0
YYD2_k127_5243417_22 3-hydroxyanthranilic acid dioxygenase K00452 GO:0000334,GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0044237,GO:0044248,GO:0051213,GO:0055114 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000003337 244.0
YYD2_k127_5243417_23 Protein of unknown function (DUF1194) - - - 0.000000000000000000000000000000000000000000000000000000000000001965 226.0
YYD2_k127_5243417_24 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000007869 186.0
YYD2_k127_5243417_25 Flavin reductase like domain K09024 - - 0.0000000000000000000000000000000000000000009382 163.0
YYD2_k127_5243417_26 SnoaL-like domain - - - 0.0000000000000000000000000000000000006005 143.0
YYD2_k127_5243417_27 COG1587 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000491 141.0
YYD2_k127_5243417_28 Winged helix DNA-binding domain - - - 0.000000000000000000000000000005165 128.0
YYD2_k127_5243417_29 COG1734 DnaK suppressor protein K06204 - - 0.000000000000000000000000000007447 123.0
YYD2_k127_5243417_3 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 9.718e-197 618.0
YYD2_k127_5243417_30 small membrane protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000001607 115.0
YYD2_k127_5243417_31 - - - - 0.0000006857 53.0
YYD2_k127_5243417_4 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004455 548.0
YYD2_k127_5243417_5 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005771 528.0
YYD2_k127_5243417_6 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 519.0
YYD2_k127_5243417_7 Amidohydrolase K03392,K22213 - 4.1.1.45,4.1.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 429.0
YYD2_k127_5243417_8 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007503 409.0
YYD2_k127_5243417_9 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 411.0
YYD2_k127_5261426_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 7.27e-231 728.0
YYD2_k127_5261426_1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 1.581e-216 680.0
YYD2_k127_5261426_10 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003794 287.0
YYD2_k127_5261426_11 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000001814 235.0
YYD2_k127_5261426_12 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000004061 234.0
YYD2_k127_5261426_13 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000001285 226.0
YYD2_k127_5261426_14 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000001299 226.0
YYD2_k127_5261426_15 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000001201 217.0
YYD2_k127_5261426_16 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000003379 207.0
YYD2_k127_5261426_17 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000000004259 199.0
YYD2_k127_5261426_18 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000001485 194.0
YYD2_k127_5261426_19 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000102 198.0
YYD2_k127_5261426_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008395 580.0
YYD2_k127_5261426_20 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000001299 186.0
YYD2_k127_5261426_21 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000000000000004169 181.0
YYD2_k127_5261426_22 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000258 175.0
YYD2_k127_5261426_23 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000000000001154 162.0
YYD2_k127_5261426_24 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000001175 164.0
YYD2_k127_5261426_25 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000009756 156.0
YYD2_k127_5261426_26 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000000000000001503 143.0
YYD2_k127_5261426_27 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000006268 117.0
YYD2_k127_5261426_28 Ribosomal protein L30 K02907 - - 0.00000000000000000001275 92.0
YYD2_k127_5261426_29 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000126 82.0
YYD2_k127_5261426_3 Belongs to the peptidase S1C family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 535.0
YYD2_k127_5261426_4 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008683 439.0
YYD2_k127_5261426_5 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 399.0
YYD2_k127_5261426_6 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 339.0
YYD2_k127_5261426_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 336.0
YYD2_k127_5261426_8 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001107 282.0
YYD2_k127_5261426_9 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008434 279.0
YYD2_k127_5261597_0 Sulfide dehydrogenase K17229 - 1.8.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 509.0
YYD2_k127_5261597_1 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000005126 141.0
YYD2_k127_5261597_2 Sulphur oxidation protein SoxZ K17227 - - 0.0000000000000000000000000000004129 132.0
YYD2_k127_5261597_3 sulfur oxidation protein (SoxY) K17226 - - 0.000000000000000000000000000003775 126.0
YYD2_k127_5261597_4 cytochrome - - - 0.0000000000000038 83.0
YYD2_k127_5261597_5 Sulphur transport K07112 - - 0.0000000000531 63.0
YYD2_k127_5282589_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 3.954e-308 959.0
YYD2_k127_5282589_1 transport system fused permease components - - - 6.677e-220 689.0
YYD2_k127_5282589_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 499.0
YYD2_k127_5282589_3 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 501.0
YYD2_k127_5282589_4 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 415.0
YYD2_k127_5282589_5 Belongs to the amidase family K01426,K19795 - 3.5.1.4,3.5.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006756 389.0
YYD2_k127_5282589_6 Histidine kinase K07716,K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 321.0
YYD2_k127_5282589_7 Xanthine and CO dehydrogenases maturation factor XdhC CoxF family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004509 278.0
YYD2_k127_5282589_8 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008881 245.0
YYD2_k127_5282589_9 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase UDP-N-acetylglucosamine-1-phosphate transferase K02851,K13007 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000005665 233.0
YYD2_k127_5282856_0 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 498.0
YYD2_k127_5282856_1 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000006801 189.0
YYD2_k127_5282856_2 GcrA cell cycle regulator K13583 - - 0.0000000000000000000000000000000000000001278 155.0
YYD2_k127_5282856_3 transmembrane transcriptional regulator (anti-sigma factor) - - - 0.0000000000000000000000001027 118.0
YYD2_k127_5282856_4 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000001209 102.0
YYD2_k127_5282856_5 - - - - 0.00005685 54.0
YYD2_k127_5327742_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 6.832e-304 947.0
YYD2_k127_5327742_1 AMP-binding enzyme C-terminal domain K00666 - - 7.192e-267 835.0
YYD2_k127_5327742_10 protein conserved in bacteria K09987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009857 265.0
YYD2_k127_5327742_11 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000000000000002599 216.0
YYD2_k127_5327742_12 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.0000000000000000000000000000000000000000000000000000000006163 205.0
YYD2_k127_5327742_13 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000004688 184.0
YYD2_k127_5327742_14 surface antigen - - - 0.00000000000000000000000000000000000000000001518 170.0
YYD2_k127_5327742_15 Binds the 23S rRNA K02909 - - 0.00000000000000000000000000000000008347 136.0
YYD2_k127_5327742_16 Transcriptional regulatory protein, C terminal K14981 - - 0.000000000000000000000000000004592 131.0
YYD2_k127_5327742_17 Belongs to the frataxin family K19054 - 1.16.3.1 0.0000000000000000000000002797 109.0
YYD2_k127_5327742_18 Protein of unknown function (DUF2390) - - - 0.000000000000000000003318 100.0
YYD2_k127_5327742_19 - - - - 0.0000000000000001426 81.0
YYD2_k127_5327742_2 ABC-type multidrug transport system, ATPase and permease K06147 - - 6.666e-225 715.0
YYD2_k127_5327742_20 Protein of unknown function (DUF1192) - - - 0.000000000008718 71.0
YYD2_k127_5327742_21 Protein of unknown function (DUF465) - - - 0.00000001519 59.0
YYD2_k127_5327742_22 - - - - 0.000001383 59.0
YYD2_k127_5327742_3 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 6.677e-220 689.0
YYD2_k127_5327742_4 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 491.0
YYD2_k127_5327742_5 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 452.0
YYD2_k127_5327742_6 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008692 372.0
YYD2_k127_5327742_7 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007496 356.0
YYD2_k127_5327742_8 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 326.0
YYD2_k127_5327742_9 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001953 285.0
YYD2_k127_5404456_0 III protein, CoA-transferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 602.0
YYD2_k127_5404456_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 420.0
YYD2_k127_5404456_2 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000005189 229.0
YYD2_k127_5404456_3 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000001871 118.0
YYD2_k127_5427071_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 1.867e-263 821.0
YYD2_k127_5427071_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 610.0
YYD2_k127_5427071_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 553.0
YYD2_k127_5427071_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 518.0
YYD2_k127_5427071_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004941 364.0
YYD2_k127_5427071_5 MOSC N-terminal beta barrel domain K07140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003516 271.0
YYD2_k127_5427071_6 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000001627 254.0
YYD2_k127_5427071_7 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000000000000001648 127.0
YYD2_k127_5427071_8 Domain of unknown function (DUF4167) - - - 0.00000000000000000000000001778 115.0
YYD2_k127_5429728_0 PAS fold K01768 - 4.6.1.1 2.459e-262 832.0
YYD2_k127_5429728_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 3.936e-212 663.0
YYD2_k127_5429728_2 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 525.0
YYD2_k127_5429728_3 MarR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 402.0
YYD2_k127_5429728_4 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 403.0
YYD2_k127_5429728_5 SMP-30/Gluconolaconase/LRE-like region K14274 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 334.0
YYD2_k127_5429728_6 COG0784 FOG CheY-like receiver K11443 - - 0.00000000000000000000000000000000000000000000000000000000000000002533 225.0
YYD2_k127_5429728_7 Domain of unknown function (DUF1849) - - - 0.0000000000000000000000000000000000000000000000000000000000003773 221.0
YYD2_k127_5429728_8 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000001602 90.0
YYD2_k127_5429728_9 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000004346 71.0
YYD2_k127_5504808_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1145.0
YYD2_k127_5504808_1 Pyridoxal-phosphate dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 482.0
YYD2_k127_5504808_2 COG1131 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 435.0
YYD2_k127_5504808_3 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000005204 221.0
YYD2_k127_5504808_4 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000000603 195.0
YYD2_k127_5504808_5 Zinc-finger domain - - - 0.0000000000000000005672 90.0
YYD2_k127_5588733_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 1.099e-243 759.0
YYD2_k127_5588733_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 612.0
YYD2_k127_5588733_10 Rieske 2Fe-2S domain protein K14748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 431.0
YYD2_k127_5588733_11 COG5285 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 417.0
YYD2_k127_5588733_12 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 428.0
YYD2_k127_5588733_13 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 401.0
YYD2_k127_5588733_14 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 378.0
YYD2_k127_5588733_15 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 365.0
YYD2_k127_5588733_16 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 355.0
YYD2_k127_5588733_17 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 357.0
YYD2_k127_5588733_18 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006956 357.0
YYD2_k127_5588733_19 With different specificities (related to short-chain alcohol - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 352.0
YYD2_k127_5588733_2 Bacterial extracellular solute-binding protein K02027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 603.0
YYD2_k127_5588733_20 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 353.0
YYD2_k127_5588733_21 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 352.0
YYD2_k127_5588733_22 Phage plasmid primase P4 family K06919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 346.0
YYD2_k127_5588733_23 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 348.0
YYD2_k127_5588733_24 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007163 323.0
YYD2_k127_5588733_25 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 314.0
YYD2_k127_5588733_26 PFAM ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 324.0
YYD2_k127_5588733_27 Alternative oxidase K17893 - 1.10.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 302.0
YYD2_k127_5588733_28 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 319.0
YYD2_k127_5588733_29 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000554 297.0
YYD2_k127_5588733_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 596.0
YYD2_k127_5588733_30 COG0524 Sugar kinases, ribokinase family K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006289 297.0
YYD2_k127_5588733_31 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 291.0
YYD2_k127_5588733_32 Belongs to the enoyl-CoA hydratase isomerase family K01692,K11264 - 4.1.1.41,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001006 280.0
YYD2_k127_5588733_33 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003278 289.0
YYD2_k127_5588733_34 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003613 286.0
YYD2_k127_5588733_35 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002037 287.0
YYD2_k127_5588733_36 GDP-mannose mannosyl hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002366 254.0
YYD2_k127_5588733_37 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.00000000000000000000000000000000000000000000000000000000000132 219.0
YYD2_k127_5588733_38 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000001717 199.0
YYD2_k127_5588733_39 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000005036 192.0
YYD2_k127_5588733_4 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 537.0
YYD2_k127_5588733_40 Phospholipid N-methyltransferase K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000001323 192.0
YYD2_k127_5588733_41 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000002391 176.0
YYD2_k127_5588733_42 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000000000000000000000000000001784 176.0
YYD2_k127_5588733_43 Cold shock protein domain K03704 - - 0.00000000000000000000000000000000000000000000151 172.0
YYD2_k127_5588733_44 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000003382 162.0
YYD2_k127_5588733_45 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000001989 157.0
YYD2_k127_5588733_46 Cyclophilin-like K09143 - - 0.0000000000000000000000000000000000004657 143.0
YYD2_k127_5588733_48 Ring hydroxylating subunit beta family protein 1 - - - 0.00000000000000000000000002755 115.0
YYD2_k127_5588733_49 PFAM FecR protein - - - 0.000000000000000000000006536 110.0
YYD2_k127_5588733_5 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 529.0
YYD2_k127_5588733_50 Cytochrome c - - - 0.000000000000000001176 92.0
YYD2_k127_5588733_51 ChaB K06197 - - 0.000000000000000007597 86.0
YYD2_k127_5588733_52 - - - - 0.00000000000000001831 88.0
YYD2_k127_5588733_53 pfam rdd - - - 0.00000000000002116 82.0
YYD2_k127_5588733_54 - - - - 0.0000000000001541 78.0
YYD2_k127_5588733_55 Transcriptional regulator - - - 0.000000000005194 74.0
YYD2_k127_5588733_56 Transposase DDE domain - - - 0.00001043 51.0
YYD2_k127_5588733_6 amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 522.0
YYD2_k127_5588733_7 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 482.0
YYD2_k127_5588733_8 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 456.0
YYD2_k127_5588733_9 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008654 455.0
YYD2_k127_5613556_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1295.0
YYD2_k127_5644516_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1641.0
YYD2_k127_5644516_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1277.0
YYD2_k127_5644516_10 CO dehydrogenase flavoprotein C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009177 327.0
YYD2_k127_5644516_11 COG4531 ABC-type Zn2 transport system, periplasmic component surface adhesin K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 328.0
YYD2_k127_5644516_12 ABC transporter K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 318.0
YYD2_k127_5644516_13 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008338 321.0
YYD2_k127_5644516_14 COG1108 ABC-type Mn2 Zn2 transport systems permease components K09816 GO:0000006,GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0042221,GO:0044464,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 312.0
YYD2_k127_5644516_15 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 301.0
YYD2_k127_5644516_16 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 302.0
YYD2_k127_5644516_17 Protein of unknown function (DUF1365) K09701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 304.0
YYD2_k127_5644516_18 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005196 287.0
YYD2_k127_5644516_19 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003222 276.0
YYD2_k127_5644516_2 Branched-chain amino acid transport system / permease component K01997,K01998 - - 7.726e-266 830.0
YYD2_k127_5644516_20 NAD FAD-binding protein K06954 - - 0.000000000000000000000000000000000000000000000000000000000001124 216.0
YYD2_k127_5644516_21 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000002439 204.0
YYD2_k127_5644516_22 Belongs to the Fur family K09823 - - 0.0000000000000000000000000000000000000000000000000000006559 198.0
YYD2_k127_5644516_23 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000000000000000001847 186.0
YYD2_k127_5644516_24 HupE / UreJ protein K03192 - - 0.00000000000000000000000000000000000000000002263 168.0
YYD2_k127_5644516_25 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000001345 162.0
YYD2_k127_5644516_26 Usg-like family - - - 0.00000000000000000000000000000000004051 139.0
YYD2_k127_5644516_27 SnoaL-like domain - - - 0.00000000000000000000000001679 124.0
YYD2_k127_5644516_3 COG1180 Pyruvate-formate lyase-activating enzyme - - - 2.522e-255 795.0
YYD2_k127_5644516_4 Amidohydrolase family K15358 - 3.5.2.18 8.742e-205 643.0
YYD2_k127_5644516_5 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611 534.0
YYD2_k127_5644516_6 synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 469.0
YYD2_k127_5644516_7 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 403.0
YYD2_k127_5644516_8 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 350.0
YYD2_k127_5644516_9 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 343.0
YYD2_k127_5659901_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 6.957e-297 921.0
YYD2_k127_5659901_1 single-stranded-DNA-specific exonuclease recJ K07462 - - 6.293e-215 683.0
YYD2_k127_5659901_10 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 357.0
YYD2_k127_5659901_11 Enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 344.0
YYD2_k127_5659901_12 Pfam:Kce - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004347 330.0
YYD2_k127_5659901_13 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 325.0
YYD2_k127_5659901_14 2-deoxy-d-gluconate 3-dehydrogenase K00019,K00065 - 1.1.1.127,1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 302.0
YYD2_k127_5659901_15 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002148 252.0
YYD2_k127_5659901_16 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001175 252.0
YYD2_k127_5659901_17 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000000000003639 228.0
YYD2_k127_5659901_18 Arm DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000006418 233.0
YYD2_k127_5659901_19 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000001226 217.0
YYD2_k127_5659901_2 CoA binding domain K17069 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47,2.5.1.49 1.706e-210 662.0
YYD2_k127_5659901_20 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002775 220.0
YYD2_k127_5659901_21 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000002086 191.0
YYD2_k127_5659901_22 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000003584 163.0
YYD2_k127_5659901_23 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000004169 169.0
YYD2_k127_5659901_24 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000001169 155.0
YYD2_k127_5659901_25 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000000000000007939 132.0
YYD2_k127_5659901_26 - - - - 0.000000000000000000000000000001125 126.0
YYD2_k127_5659901_27 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000008475 126.0
YYD2_k127_5659901_28 Tetratricopeptide repeat - - - 0.000000000000000000215 102.0
YYD2_k127_5659901_29 Amidohydrolase K07046 - - 0.0000000000000002991 83.0
YYD2_k127_5659901_3 Bacterial protein of unknown function (DUF853) K06915 - - 2.61e-204 649.0
YYD2_k127_5659901_30 transporter component K07112 - - 0.0002209 47.0
YYD2_k127_5659901_4 Aminotransferase K14261 - - 8.806e-200 633.0
YYD2_k127_5659901_5 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009955 587.0
YYD2_k127_5659901_6 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 557.0
YYD2_k127_5659901_7 COG1494 Fructose-1,6-bisphosphatase sedoheptulose 1,7-bisphosphatase and related proteins K11532 - 3.1.3.11,3.1.3.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 525.0
YYD2_k127_5659901_8 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005111 525.0
YYD2_k127_5659901_9 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 441.0
YYD2_k127_5667449_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01907 - 6.2.1.16 8.734e-313 973.0
YYD2_k127_5667449_1 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 1.319e-282 897.0
YYD2_k127_5667449_10 oxidoreductase FAD NAD(P)-binding domain protein K14581 - 1.18.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008494 436.0
YYD2_k127_5667449_11 Aldo keto reductase - GO:0003674,GO:0003824,GO:0004033,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016491,GO:0016614,GO:0016616,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034198,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0071496,GO:1990928 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 434.0
YYD2_k127_5667449_12 COG1840 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 415.0
YYD2_k127_5667449_13 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 411.0
YYD2_k127_5667449_14 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008024 374.0
YYD2_k127_5667449_15 FIST_C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005626 385.0
YYD2_k127_5667449_16 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 360.0
YYD2_k127_5667449_17 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 354.0
YYD2_k127_5667449_18 Phenylacetic acid catabolic protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 356.0
YYD2_k127_5667449_19 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 343.0
YYD2_k127_5667449_2 Proton-conducting membrane transporter - - - 1.601e-240 763.0
YYD2_k127_5667449_20 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232 340.0
YYD2_k127_5667449_21 Ion channel K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 317.0
YYD2_k127_5667449_22 Inhibitor of apoptosis-promoting Bax1 K06890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 304.0
YYD2_k127_5667449_23 ATPases associated with a variety of cellular activities K02003 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006743 305.0
YYD2_k127_5667449_24 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006351 297.0
YYD2_k127_5667449_25 COG4237 Hydrogenase 4 membrane component (E) K12140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 288.0
YYD2_k127_5667449_26 Uracil-DNA glycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007135 282.0
YYD2_k127_5667449_27 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005573 274.0
YYD2_k127_5667449_28 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001821 253.0
YYD2_k127_5667449_29 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000007014 241.0
YYD2_k127_5667449_3 Berberine and berberine like - - - 2.292e-222 697.0
YYD2_k127_5667449_30 DinB family - - - 0.0000000000000000000000000000000000000000000000000000000007357 205.0
YYD2_k127_5667449_31 Zincin-like metallopeptidase - - - 0.0000000000000000000000000000000000000000000000000000004393 198.0
YYD2_k127_5667449_32 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000000000000000001692 189.0
YYD2_k127_5667449_33 low molecular weight K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000001592 183.0
YYD2_k127_5667449_34 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 - 3.5.4.5 0.0000000000000000000000000000000000000000001017 164.0
YYD2_k127_5667449_35 - - - - 0.000000000000000000000000000000000000001358 155.0
YYD2_k127_5667449_36 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000003705 139.0
YYD2_k127_5667449_37 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000001178 128.0
YYD2_k127_5667449_38 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000000004887 117.0
YYD2_k127_5667449_39 - - - - 0.00000000000000000000000003183 115.0
YYD2_k127_5667449_4 Aldehyde dehydrogenase family K00128 - 1.2.1.3 5.948e-217 685.0
YYD2_k127_5667449_40 acetyltransferase K03824 - - 0.000000000000001103 79.0
YYD2_k127_5667449_5 Proton-conducting membrane transporter K12141 - - 1.067e-211 667.0
YYD2_k127_5667449_6 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 3.288e-205 652.0
YYD2_k127_5667449_7 alcohol dehydrogenase K00001,K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007515 520.0
YYD2_k127_5667449_8 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 503.0
YYD2_k127_5667449_9 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 467.0
YYD2_k127_5678157_0 COG1960 Acyl-CoA dehydrogenases K14448 - 1.3.8.12 4.931e-216 683.0
YYD2_k127_5678157_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006468 490.0
YYD2_k127_5678157_10 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000000000000006483 238.0
YYD2_k127_5678157_11 Electron transfer flavoprotein K03522 - - 0.0000000000000000000000000000000000000000000000000000000002615 207.0
YYD2_k127_5678157_12 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000002885 181.0
YYD2_k127_5678157_13 Bacterial protein of unknown function (DUF898) - - - 0.0000000000000000000000000000000000000000000000002722 190.0
YYD2_k127_5678157_14 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000004475 178.0
YYD2_k127_5678157_15 bond formation protein, DsbB - - - 0.0000000000000000000000000000000000000000001641 165.0
YYD2_k127_5678157_16 ribonuclease - GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000009954 158.0
YYD2_k127_5678157_17 Transposase - - - 0.000000000000000000000000000000000000001857 149.0
YYD2_k127_5678157_18 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000004862 134.0
YYD2_k127_5678157_19 Belongs to the UPF0173 family - - - 0.00000000000000002963 92.0
YYD2_k127_5678157_2 Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 462.0
YYD2_k127_5678157_20 Barstar (barnase inhibitor) K03623 - - 0.0000000000001056 76.0
YYD2_k127_5678157_21 Hypoxia induced protein conserved region - - - 0.000000001015 62.0
YYD2_k127_5678157_22 Phage plasmid primase P4 family - - - 0.000000001401 63.0
YYD2_k127_5678157_3 Electron transfer flavoprotein, beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 397.0
YYD2_k127_5678157_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 383.0
YYD2_k127_5678157_5 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 332.0
YYD2_k127_5678157_6 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 324.0
YYD2_k127_5678157_7 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002585 289.0
YYD2_k127_5678157_8 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007635 275.0
YYD2_k127_5678157_9 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001297 239.0
YYD2_k127_5680180_0 Succinyl-CoA ligase like flavodoxin domain - - - 0.0 1345.0
YYD2_k127_5680180_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.651e-280 878.0
YYD2_k127_5680180_10 Carbon monoxide dehydrogenase subunit G (CoxG) K09386 - - 0.0000000000000000000000000000000000000000000000000000000000000794 218.0
YYD2_k127_5680180_11 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000000000000000000000000000000004982 223.0
YYD2_k127_5680180_12 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000000000001367 156.0
YYD2_k127_5680180_13 Domain of Unknown Function (DUF748) - - - 0.00000001942 56.0
YYD2_k127_5680180_14 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K03518 - 1.2.5.3 0.000005658 49.0
YYD2_k127_5680180_2 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 5.553e-253 794.0
YYD2_k127_5680180_3 protein conserved in bacteria K07793 - - 1.532e-236 739.0
YYD2_k127_5680180_4 ATP citrate lyase citrate-binding - - - 9.294e-222 705.0
YYD2_k127_5680180_5 TRAP transporter solute receptor TAXI family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 432.0
YYD2_k127_5680180_6 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K15598 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 413.0
YYD2_k127_5680180_7 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 384.0
YYD2_k127_5680180_8 ABC transporter K15600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 303.0
YYD2_k127_5680180_9 COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component K15599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 295.0
YYD2_k127_5699839_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1037.0
YYD2_k127_5699839_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 3.12e-220 689.0
YYD2_k127_5699839_10 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006544 351.0
YYD2_k127_5699839_11 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001355 253.0
YYD2_k127_5699839_12 Riboflavin synthase K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000003232 240.0
YYD2_k127_5699839_13 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000003507 216.0
YYD2_k127_5699839_14 COG0698 Ribose 5-phosphate isomerase RpiB K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000862 197.0
YYD2_k127_5699839_15 ROS/MUCR transcriptional regulator protein - - - 0.00000000000000000000000000000000000000000000000002122 183.0
YYD2_k127_5699839_16 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000000002502 164.0
YYD2_k127_5699839_17 Ubiquinol-cytochrome C chaperone K17662 - - 0.00000000000000000000000000000000000000000006447 169.0
YYD2_k127_5699839_18 transcriptional regulator, MerR - - - 0.0000000000000000000000000000000000000001228 156.0
YYD2_k127_5699839_19 COG2913 Small protein A (tmRNA-binding) - - - 0.00000000000000000000000000000000000009971 149.0
YYD2_k127_5699839_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 549.0
YYD2_k127_5699839_20 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000002184 150.0
YYD2_k127_5699839_21 - - - - 0.000000000000000000000000000000002043 134.0
YYD2_k127_5699839_22 Uncharacterized ACR, COG1399 - - - 0.00000000000000000000000003075 115.0
YYD2_k127_5699839_23 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000000000000003942 109.0
YYD2_k127_5699839_3 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
YYD2_k127_5699839_4 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 483.0
YYD2_k127_5699839_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 466.0
YYD2_k127_5699839_6 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 456.0
YYD2_k127_5699839_7 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007491 420.0
YYD2_k127_5699839_8 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 388.0
YYD2_k127_5699839_9 branched-chain amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006365 358.0
YYD2_k127_5719002_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 5.059e-255 796.0
YYD2_k127_5719002_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 607.0
YYD2_k127_5719002_10 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000871 164.0
YYD2_k127_5719002_11 TfoX N-terminal domain K07343 GO:0006355,GO:0006810,GO:0007154,GO:0008150,GO:0009290,GO:0009292,GO:0009294,GO:0009605,GO:0009889,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0015931,GO:0019219,GO:0019222,GO:0030420,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031668,GO:0044087,GO:0044089,GO:0044093,GO:0044764,GO:0048518,GO:0048522,GO:0050657,GO:0050789,GO:0050794,GO:0050896,GO:0051027,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051704,GO:0051716,GO:0060255,GO:0060491,GO:0065007,GO:0065009,GO:0071496,GO:0071702,GO:0071705,GO:0080090,GO:0098657,GO:1903506,GO:1903656,GO:1903658,GO:2000112,GO:2001141 - 0.0000000000000000000000283 110.0
YYD2_k127_5719002_13 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00005622 48.0
YYD2_k127_5719002_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 530.0
YYD2_k127_5719002_3 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007577 479.0
YYD2_k127_5719002_4 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007979 442.0
YYD2_k127_5719002_5 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 404.0
YYD2_k127_5719002_6 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 314.0
YYD2_k127_5719002_7 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000004173 181.0
YYD2_k127_5719002_8 Aldehyde-activating protein - - - 0.0000000000000000000000000000000000000000000000008203 178.0
YYD2_k127_5719002_9 Stringent starvation protein B K09985 - - 0.0000000000000000000000000000000000000000000001109 173.0
YYD2_k127_5722238_0 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 297.0
YYD2_k127_5722238_1 PFAM ABC transporter K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000004871 200.0
YYD2_k127_5722238_2 COG0725 ABC-type molybdate transport system, periplasmic component K02020 - - 0.000000000000000000000000000000000000000000000000000000929 197.0
YYD2_k127_5731843_0 ABC-type dipeptide transport system, periplasmic component K02035 - - 6.516e-253 792.0
YYD2_k127_5731843_1 Ketopantoate reductase PanE/ApbA C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 448.0
YYD2_k127_5731843_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007677 390.0
YYD2_k127_5731843_3 Creatinine amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 354.0
YYD2_k127_5731843_4 Catalyzes the NAD( )-dependent oxidation of L-carnitine to 3-dehydrocarnitine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 346.0
YYD2_k127_5731843_5 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 341.0
YYD2_k127_5731843_6 helix_turn_helix ASNC type K05800 - - 0.0000000000000000000000000000000000000000000000000000000000000000008714 230.0
YYD2_k127_5731843_7 - - - - 0.00000000000001093 80.0
YYD2_k127_5731843_8 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000003727 60.0
YYD2_k127_5742493_0 Molybdopterin oxidoreductase Fe4S4 domain K00370 - 1.7.5.1 0.0 1106.0
YYD2_k127_5742493_1 Major Facilitator Superfamily K02575 - - 1.455e-220 694.0
YYD2_k127_5742493_2 Major Facilitator Superfamily K02575 - - 2.458e-219 687.0
YYD2_k127_5742493_3 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004394 418.0
YYD2_k127_5742493_4 phosphohistidine phosphatase, SixA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005881 258.0
YYD2_k127_5742493_5 - - - - 0.0000000000000000000000000000000000000000000000000000000002563 221.0
YYD2_k127_5742493_6 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K13642 - - 0.0000000000000000000000000000000000002146 150.0
YYD2_k127_5742493_7 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.0000000000000000000000004689 107.0
YYD2_k127_5747858_0 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 343.0
YYD2_k127_5747858_1 Protein of unknown function (DUF1194) - - - 0.00000000000000000000000000000000000000000000000000002202 197.0
YYD2_k127_5747858_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000000000000000000000000000000000000000004696 161.0
YYD2_k127_5747858_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000008802 143.0
YYD2_k127_5747858_4 - - - - 0.0000000000000000634 82.0
YYD2_k127_5753845_0 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01965 - 6.4.1.3 3.522e-281 881.0
YYD2_k127_5753845_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 306.0
YYD2_k127_5753845_2 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000000000000000000000001503 126.0
YYD2_k127_5753845_3 Malic enzyme, NAD binding domain K00029 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.40 0.00000000000000000001768 93.0
YYD2_k127_5753845_4 2TM domain - - - 0.0000000000000000000613 89.0
YYD2_k127_5753845_5 - - - - 0.000000000003848 73.0
YYD2_k127_5753845_6 Uncharacterized protein conserved in bacteria (DUF2059) - - - 0.0004736 50.0
YYD2_k127_5764173_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 3.244e-229 715.0
YYD2_k127_5764173_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006439 550.0
YYD2_k127_5764173_10 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.0000000000000000000000000000000000000000000000000000000003558 209.0
YYD2_k127_5764173_11 NnrU protein - - - 0.0000000000000000000000000000000000000000000000000000001201 203.0
YYD2_k127_5764173_12 YHS domain protein - - - 0.00000000000000000000000000000000000000000004412 168.0
YYD2_k127_5764173_13 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000000000000000008771 152.0
YYD2_k127_5764173_14 invasion associated locus B - - - 0.0000000000000000000000000000000000000002868 155.0
YYD2_k127_5764173_15 transcriptional regulator - - - 0.00000000000000000000000000000007396 132.0
YYD2_k127_5764173_16 PFAM Acetyltransferase (GNAT) family K03824 - - 0.0000000005644 66.0
YYD2_k127_5764173_17 PFAM Protein kinase domain - - - 0.000000009088 59.0
YYD2_k127_5764173_2 sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 477.0
YYD2_k127_5764173_3 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 409.0
YYD2_k127_5764173_4 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 398.0
YYD2_k127_5764173_5 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 330.0
YYD2_k127_5764173_6 COG3806 Anti-sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 330.0
YYD2_k127_5764173_7 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 314.0
YYD2_k127_5764173_8 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000006778 227.0
YYD2_k127_5764173_9 ChrR Cupin-like domain K07167 - - 0.00000000000000000000000000000000000000000000000000000000001178 213.0
YYD2_k127_5775789_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates - - - 0.0 1018.0
YYD2_k127_5775789_1 AMP-binding enzyme K12508 - 6.2.1.34 6.057e-245 770.0
YYD2_k127_5775789_10 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 330.0
YYD2_k127_5775789_11 PFAM flavin reductase domain protein, FMN-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 308.0
YYD2_k127_5775789_12 Protein of unknown function (DUF938) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005262 271.0
YYD2_k127_5775789_13 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006814 267.0
YYD2_k127_5775789_14 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000006938 142.0
YYD2_k127_5775789_15 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000005955 136.0
YYD2_k127_5775789_16 shape-determining protein K03571 - - 0.0000000000000000000000000000001163 140.0
YYD2_k127_5775789_17 pfkB family carbohydrate kinase K00852,K18478 - 2.7.1.15,2.7.1.184 0.000000000000000000000000000001627 126.0
YYD2_k127_5775789_18 Belongs to the carbohydrate kinase PfkB family K18478 - 2.7.1.184 0.00000000000000000006294 94.0
YYD2_k127_5775789_2 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 9.097e-244 767.0
YYD2_k127_5775789_3 Rod shape-determining protein MreB K03569 - - 1.13e-201 630.0
YYD2_k127_5775789_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008061 536.0
YYD2_k127_5775789_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004125 497.0
YYD2_k127_5775789_6 SbmA/BacA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 487.0
YYD2_k127_5775789_7 Pyruvate ferredoxin/flavodoxin oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 466.0
YYD2_k127_5775789_8 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 400.0
YYD2_k127_5775789_9 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 332.0
YYD2_k127_5791167_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004537 331.0
YYD2_k127_5791167_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009355 297.0
YYD2_k127_5791167_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000001814 235.0
YYD2_k127_5791167_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000009472 227.0
YYD2_k127_5791167_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000006577 211.0
YYD2_k127_5791167_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000001291 180.0
YYD2_k127_5791167_6 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000000000000000003444 97.0
YYD2_k127_5791167_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000005149 61.0
YYD2_k127_5803783_0 Catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive - - - 2.649e-293 909.0
YYD2_k127_5803783_1 Aerotolerance regulator N-terminal - - - 5.308e-283 896.0
YYD2_k127_5803783_10 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 353.0
YYD2_k127_5803783_11 Cytochrome C1 family K00413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 322.0
YYD2_k127_5803783_12 Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 306.0
YYD2_k127_5803783_13 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004493 280.0
YYD2_k127_5803783_14 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000432 226.0
YYD2_k127_5803783_15 Protein of unknown function (DUF1285) K09986 - - 0.0000000000000000000000000000000000000000000000000000000003732 212.0
YYD2_k127_5803783_16 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000000000000000000000009539 211.0
YYD2_k127_5803783_17 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000002384 199.0
YYD2_k127_5803783_18 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000001771 186.0
YYD2_k127_5803783_19 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000001083 171.0
YYD2_k127_5803783_2 COG1012 NAD-dependent aldehyde dehydrogenases K13922,K15515 - 1.2.1.81,1.2.1.87 1.36e-238 753.0
YYD2_k127_5803783_20 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000003312 147.0
YYD2_k127_5803783_21 DNA-binding transcription factor activity - - - 0.000000000000000000000000009695 119.0
YYD2_k127_5803783_22 - - - - 0.000000000006094 75.0
YYD2_k127_5803783_23 HMGL-like K01640 - 4.1.3.4 0.00001293 55.0
YYD2_k127_5803783_24 LTXXQ motif family protein - - - 0.0007329 49.0
YYD2_k127_5803783_3 membrane - - - 1.78e-236 752.0
YYD2_k127_5803783_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 1.756e-208 669.0
YYD2_k127_5803783_5 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 516.0
YYD2_k127_5803783_6 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 - 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 456.0
YYD2_k127_5803783_7 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 466.0
YYD2_k127_5803783_8 poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007981 445.0
YYD2_k127_5803783_9 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009814 363.0
YYD2_k127_5824933_0 Methionine synthase K00548 - 2.1.1.13 0.0 1692.0
YYD2_k127_5824933_1 DNA helicase K03657 - 3.6.4.12 0.0 1013.0
YYD2_k127_5824933_11 Domain of unknown function (DUF1127) - - - 0.0004154 50.0
YYD2_k127_5824933_2 aminopeptidase K01262 - 3.4.11.9 3.896e-250 790.0
YYD2_k127_5824933_3 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002957 313.0
YYD2_k127_5824933_4 ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000000000000000000000002378 223.0
YYD2_k127_5824933_5 Sodium Bile acid symporter family - - - 0.00000000000000000000000000000000000000000000000000000003424 208.0
YYD2_k127_5824933_6 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000003094 182.0
YYD2_k127_5824933_7 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000004654 169.0
YYD2_k127_5824933_8 CGNR zinc finger - - - 0.00000000000000000000002484 108.0
YYD2_k127_5824933_9 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.000000000000000001785 91.0
YYD2_k127_5846305_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 8.022e-291 901.0
YYD2_k127_5846305_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 374.0
YYD2_k127_5846305_2 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 335.0
YYD2_k127_5846305_3 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 345.0
YYD2_k127_5846305_4 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000001294 245.0
YYD2_k127_5846305_5 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000006674 221.0
YYD2_k127_5846305_6 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.000000000000000000000000000000000000000000000000000000004183 205.0
YYD2_k127_5846305_7 Uncharacterized ACR, COG1993 K09137 - - 0.00000000000000000000000000000000000000000000000001238 181.0
YYD2_k127_5871218_0 Adenylate - - - 4.626e-312 992.0
YYD2_k127_5871218_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.278e-293 918.0
YYD2_k127_5871218_10 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000009273 158.0
YYD2_k127_5871218_11 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000006213 141.0
YYD2_k127_5871218_12 FCD - - - 0.00000000000000007447 89.0
YYD2_k127_5871218_13 transcription regulator containing HTH domain K18831 - - 0.0000000000000124 77.0
YYD2_k127_5871218_14 Sterol carrier protein - - - 0.00000000000005771 79.0
YYD2_k127_5871218_15 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000001064 58.0
YYD2_k127_5871218_2 Lipoprotein releasing system transmembrane protein LolC K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0098796,GO:0098797 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 556.0
YYD2_k127_5871218_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 514.0
YYD2_k127_5871218_4 Protein conserved in bacteria K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 397.0
YYD2_k127_5871218_5 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 325.0
YYD2_k127_5871218_6 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit K15751 - 1.14.12.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007846 325.0
YYD2_k127_5871218_7 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K05685,K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 305.0
YYD2_k127_5871218_8 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000001949 218.0
YYD2_k127_5871218_9 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000000001406 192.0
YYD2_k127_5903863_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1126.0
YYD2_k127_5903863_1 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 7.881e-262 824.0
YYD2_k127_5903863_10 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 535.0
YYD2_k127_5903863_11 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 520.0
YYD2_k127_5903863_12 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 500.0
YYD2_k127_5903863_13 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K18661 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 496.0
YYD2_k127_5903863_14 amp-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 508.0
YYD2_k127_5903863_15 Peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 486.0
YYD2_k127_5903863_16 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008518 482.0
YYD2_k127_5903863_17 Metal-dependent hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 458.0
YYD2_k127_5903863_18 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 447.0
YYD2_k127_5903863_19 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 430.0
YYD2_k127_5903863_2 Amidohydrolase K07045 - - 1.013e-246 771.0
YYD2_k127_5903863_20 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 415.0
YYD2_k127_5903863_21 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 416.0
YYD2_k127_5903863_22 Belongs to the DapA family K21062 - 3.5.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004094 415.0
YYD2_k127_5903863_23 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 404.0
YYD2_k127_5903863_24 ABC-type spermidine putrescine transport system, permease component II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 394.0
YYD2_k127_5903863_25 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 385.0
YYD2_k127_5903863_26 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 366.0
YYD2_k127_5903863_27 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 345.0
YYD2_k127_5903863_28 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 316.0
YYD2_k127_5903863_29 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 314.0
YYD2_k127_5903863_3 transport system fused permease components - - - 5.5e-241 763.0
YYD2_k127_5903863_30 isochorismatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 301.0
YYD2_k127_5903863_31 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004084 278.0
YYD2_k127_5903863_32 Fumarylacetoacetate (FAA) hydrolase family K01617 - 4.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000001697 254.0
YYD2_k127_5903863_33 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000003476 140.0
YYD2_k127_5903863_34 COG2346, Truncated hemoglobins K03406,K06886 GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008941,GO:0009056,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016491,GO:0016705,GO:0016708,GO:0017144,GO:0019825,GO:0020012,GO:0020037,GO:0030682,GO:0034641,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043207,GO:0044237,GO:0044248,GO:0044270,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046210,GO:0046906,GO:0048037,GO:0050896,GO:0051213,GO:0051410,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:0075136,GO:0097159,GO:0098754,GO:1901363,GO:1901698,GO:2001057 - 0.00000000000000002599 83.0
YYD2_k127_5903863_35 - - - - 0.000000001107 65.0
YYD2_k127_5903863_4 COG0318, Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K02182,K20034 - 6.2.1.44,6.2.1.48 1.706e-224 707.0
YYD2_k127_5903863_5 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 7.691e-195 627.0
YYD2_k127_5903863_6 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 597.0
YYD2_k127_5903863_7 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 576.0
YYD2_k127_5903863_8 Proline racemase K12658 - 5.1.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 562.0
YYD2_k127_5903863_9 transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 544.0
YYD2_k127_5911384_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter - - - 3.297e-311 980.0
YYD2_k127_5911384_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 7.975e-276 859.0
YYD2_k127_5911384_10 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 407.0
YYD2_k127_5911384_11 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 405.0
YYD2_k127_5911384_12 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 393.0
YYD2_k127_5911384_13 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 389.0
YYD2_k127_5911384_14 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005838 379.0
YYD2_k127_5911384_15 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 364.0
YYD2_k127_5911384_16 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007581 350.0
YYD2_k127_5911384_17 PFAM D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K16843 - 1.1.1.310 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 340.0
YYD2_k127_5911384_18 Fumarase C-terminus K01678,K03780 - 4.2.1.2,4.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 312.0
YYD2_k127_5911384_19 Predicted integral membrane protein (DUF2189) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000012 291.0
YYD2_k127_5911384_2 COG2217 Cation transport ATPase K01533 - 3.6.3.4 8.153e-275 867.0
YYD2_k127_5911384_20 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004552 274.0
YYD2_k127_5911384_21 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002507 263.0
YYD2_k127_5911384_22 Phenylacetic acid degradation protein PaaY K02617 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004256 261.0
YYD2_k127_5911384_23 Universal stress protein UspA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005168 246.0
YYD2_k127_5911384_24 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000000000000000006314 224.0
YYD2_k127_5911384_25 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000006252 192.0
YYD2_k127_5911384_26 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000001061 189.0
YYD2_k127_5911384_27 Shikimate kinase K00851 - 2.7.1.12 0.0000000000000000000000000000000000000000000009787 172.0
YYD2_k127_5911384_28 SAF - - - 0.00000000000000000000000000000000000000000003427 164.0
YYD2_k127_5911384_29 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.0000000000000000000000000000000000000003478 155.0
YYD2_k127_5911384_3 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00244 - 1.3.5.4 5.998e-272 848.0
YYD2_k127_5911384_30 FtsZ-dependent cytokinesis - - - 0.000000000000000000000000000000000004691 146.0
YYD2_k127_5911384_31 FixH - - - 0.000000000000000000000000000006914 127.0
YYD2_k127_5911384_32 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.00000000000000000000000000046 121.0
YYD2_k127_5911384_33 Gamma-glutamyl cyclotransferase, AIG2-like K19761 - - 0.00000000000000000000007297 105.0
YYD2_k127_5911384_34 cytochrome oxidase maturation protein - - - 0.00000000000002807 78.0
YYD2_k127_5911384_35 PFAM Cbb3-type cytochrome oxidase component K00407 - - 0.00000000001548 65.0
YYD2_k127_5911384_36 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.000000005018 66.0
YYD2_k127_5911384_37 - - - - 0.00000003359 62.0
YYD2_k127_5911384_4 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 1.477e-234 741.0
YYD2_k127_5911384_5 phenylacetic acid degradation protein paaN - - - 1.181e-226 716.0
YYD2_k127_5911384_6 D-galactarate dehydratase / Altronate hydrolase, C terminus - - - 7.441e-220 691.0
YYD2_k127_5911384_7 Nitrogen fixation protein fixG - - - 8.981e-202 639.0
YYD2_k127_5911384_8 Fumarate hydratase (Fumerase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 472.0
YYD2_k127_5911384_9 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009937 425.0
YYD2_k127_5919780_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1214.0
YYD2_k127_5919780_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.514e-248 786.0
YYD2_k127_5919780_2 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 610.0
YYD2_k127_5919780_3 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008967 539.0
YYD2_k127_5919780_4 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000409 186.0
YYD2_k127_5949975_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 5.683e-215 685.0
YYD2_k127_5949975_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004741 602.0
YYD2_k127_5949975_10 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 421.0
YYD2_k127_5949975_11 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 417.0
YYD2_k127_5949975_12 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 385.0
YYD2_k127_5949975_13 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 370.0
YYD2_k127_5949975_14 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006473 361.0
YYD2_k127_5949975_15 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 335.0
YYD2_k127_5949975_16 Pyrimidine-specific ribonucleoside hydrolase RihA K01239 - 3.2.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 329.0
YYD2_k127_5949975_17 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 331.0
YYD2_k127_5949975_18 Protein of unknown function, DUF547 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 301.0
YYD2_k127_5949975_19 Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate K00598 - 2.1.1.144 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 287.0
YYD2_k127_5949975_2 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 599.0
YYD2_k127_5949975_20 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007706 264.0
YYD2_k127_5949975_21 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000002377 231.0
YYD2_k127_5949975_22 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.0000000000000000000000000000000000000000000000000000000000000003024 226.0
YYD2_k127_5949975_23 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000000004649 234.0
YYD2_k127_5949975_24 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000005076 156.0
YYD2_k127_5949975_25 - - - - 0.0000000000000000000000000000000000004822 152.0
YYD2_k127_5949975_26 Domain of unknown function (DUF4864) - - - 0.000000000000000000000000000000000001069 144.0
YYD2_k127_5949975_27 PFAM Ion transport 2 domain protein - - - 0.00000000000000000000000000000000003898 140.0
YYD2_k127_5949975_28 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000005683 110.0
YYD2_k127_5949975_29 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000005878 104.0
YYD2_k127_5949975_3 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 589.0
YYD2_k127_5949975_30 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000006195 100.0
YYD2_k127_5949975_31 - - - - 0.00000000000009303 82.0
YYD2_k127_5949975_32 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000001462 78.0
YYD2_k127_5949975_33 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.00000003341 56.0
YYD2_k127_5949975_4 Peptidase dimerisation domain K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 576.0
YYD2_k127_5949975_5 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 487.0
YYD2_k127_5949975_6 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 484.0
YYD2_k127_5949975_7 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 475.0
YYD2_k127_5949975_8 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 460.0
YYD2_k127_5949975_9 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 449.0
YYD2_k127_5951214_0 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007119 559.0
YYD2_k127_5951214_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514 441.0
YYD2_k127_5953430_0 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 298.0
YYD2_k127_5953430_1 - - - - 0.00000000000000000000000000000000000000000000000001362 185.0
YYD2_k127_5953430_2 Protein of unknown function (DUF1272) K09984 - - 0.0000000000000009529 77.0
YYD2_k127_5953851_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 4.764e-260 807.0
YYD2_k127_5953851_1 formate hydrogenlyase subunit 3 multisubunit Na H antiporter, MnhD subunit K05568,K12137 - - 4.633e-228 719.0
YYD2_k127_5953851_10 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 471.0
YYD2_k127_5953851_11 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 464.0
YYD2_k127_5953851_12 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 474.0
YYD2_k127_5953851_13 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 443.0
YYD2_k127_5953851_14 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 426.0
YYD2_k127_5953851_15 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 404.0
YYD2_k127_5953851_16 Protein of unknown function (DUF2817) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 392.0
YYD2_k127_5953851_17 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 386.0
YYD2_k127_5953851_18 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00065 - 1.1.1.127 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 354.0
YYD2_k127_5953851_19 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 347.0
YYD2_k127_5953851_2 Proton-conducting membrane transporter - - - 6.822e-206 651.0
YYD2_k127_5953851_20 Domain of unknown function (DUF4347) K21449 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 370.0
YYD2_k127_5953851_21 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 352.0
YYD2_k127_5953851_22 nucleoside-diphosphate sugar epimerase K07276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 317.0
YYD2_k127_5953851_23 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488 330.0
YYD2_k127_5953851_24 COG1522 Transcriptional regulators - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000462 265.0
YYD2_k127_5953851_25 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000005747 232.0
YYD2_k127_5953851_26 Domain of unknown function (DUF4040) K05566 - - 0.0000000000000000000000000000000000000000000000000000000000001152 223.0
YYD2_k127_5953851_27 Type II secretion system (T2SS), protein F - - - 0.000000000000000000000000000000000000000000000000000000000001776 221.0
YYD2_k127_5953851_28 - - - - 0.000000000000000000000000000000000000000000000000000000000003782 214.0
YYD2_k127_5953851_29 Type II secretion system (T2SS), protein F K12511 - - 0.0000000000000000000000000000000000000000000000000000000000514 217.0
YYD2_k127_5953851_3 Cysteine-rich domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 608.0
YYD2_k127_5953851_30 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000006168 195.0
YYD2_k127_5953851_31 Domain related to MnhB subunit of Na+/H+ antiporter K05566 - - 0.000000000000000000000000000000000000000000000000002192 194.0
YYD2_k127_5953851_32 COG1006 Multisubunit Na H antiporter, MnhC subunit K05567 - - 0.00000000000000000000000000000000000000000000000005683 180.0
YYD2_k127_5953851_33 COG1863 Multisubunit Na H antiporter MnhE subunit K05569 - - 0.000000000000000000000000000000000000000000000006518 178.0
YYD2_k127_5953851_34 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K20444 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000005837 180.0
YYD2_k127_5953851_35 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000001489 176.0
YYD2_k127_5953851_36 monovalent cation:proton antiporter activity K05571 - - 0.0000000000000000000000000000000000001244 143.0
YYD2_k127_5953851_37 Chromate resistance exported protein - - - 0.0000000000000000000000000000000000004565 141.0
YYD2_k127_5953851_38 Glycosyltransferase family 87 - - - 0.000000000000000000000000000000000119 148.0
YYD2_k127_5953851_39 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000000003079 122.0
YYD2_k127_5953851_4 Proton-conducting membrane transporter K00343,K05568 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 581.0
YYD2_k127_5953851_40 - - - - 0.00000000000000000000000001678 109.0
YYD2_k127_5953851_41 - - - - 0.0000000000000000000000000298 123.0
YYD2_k127_5953851_42 Protein of unknown function (DUF2927) - - - 0.0000000000000000000000005065 116.0
YYD2_k127_5953851_43 peptidase K02278 - 3.4.23.43 0.0000000000000000000007719 102.0
YYD2_k127_5953851_44 - - - - 0.00000000000000000004418 95.0
YYD2_k127_5953851_45 lysyltransferase activity K07027 - - 0.00000000000000006876 92.0
YYD2_k127_5953851_46 Dodecin K09165 - - 0.000000000000009605 77.0
YYD2_k127_5953851_47 - - - - 0.00000000000009832 73.0
YYD2_k127_5953851_48 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000001473 77.0
YYD2_k127_5953851_49 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000003552 79.0
YYD2_k127_5953851_5 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 539.0
YYD2_k127_5953851_50 Flp Fap pilin component K02651 - - 0.000000001028 62.0
YYD2_k127_5953851_51 PFAM Flp Fap pilin component K02651 - - 0.000000003931 61.0
YYD2_k127_5953851_52 Flp Fap pilin component K02651 - - 0.00000001803 58.0
YYD2_k127_5953851_6 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 510.0
YYD2_k127_5953851_7 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009535 534.0
YYD2_k127_5953851_8 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000811 500.0
YYD2_k127_5953851_9 Type II/IV secretion system protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004422 478.0
YYD2_k127_5962274_0 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1718.0
YYD2_k127_5962274_1 ABC transporter transmembrane region K02021 - - 3.069e-298 940.0
YYD2_k127_5962274_10 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 398.0
YYD2_k127_5962274_11 COG0708 Exonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 365.0
YYD2_k127_5962274_12 Thioredoxin K05838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 358.0
YYD2_k127_5962274_13 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 353.0
YYD2_k127_5962274_14 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 328.0
YYD2_k127_5962274_15 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 296.0
YYD2_k127_5962274_16 Flavodoxin-like fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007551 247.0
YYD2_k127_5962274_17 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000003185 235.0
YYD2_k127_5962274_18 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000005083 227.0
YYD2_k127_5962274_19 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000004831 194.0
YYD2_k127_5962274_2 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 3.501e-274 866.0
YYD2_k127_5962274_20 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000000005718 192.0
YYD2_k127_5962274_21 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000000006821 187.0
YYD2_k127_5962274_22 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000004064 190.0
YYD2_k127_5962274_23 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000004271 181.0
YYD2_k127_5962274_24 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000004903 154.0
YYD2_k127_5962274_25 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000007547 143.0
YYD2_k127_5962274_26 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000001544 136.0
YYD2_k127_5962274_27 S-adenosyl-L-methionine methyltransferase - - - 0.00000000000000000000000000000000005995 147.0
YYD2_k127_5962274_28 protein conserved in bacteria K09796 - - 0.00000000000000000000000003818 113.0
YYD2_k127_5962274_29 Belongs to the UPF0434 family K09791 - - 0.0000000000000000000000000997 107.0
YYD2_k127_5962274_3 Ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 558.0
YYD2_k127_5962274_30 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000005396 121.0
YYD2_k127_5962274_31 Vibrio cholerae RfbT protein - - - 0.0000000000000000000000224 111.0
YYD2_k127_5962274_32 Pfam:DUF461 K09796 - - 0.00000000006096 69.0
YYD2_k127_5962274_33 Alpha beta hydrolase - - - 0.000008759 58.0
YYD2_k127_5962274_4 Glycosyltransferase family 28 C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 550.0
YYD2_k127_5962274_5 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 489.0
YYD2_k127_5962274_6 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006986 479.0
YYD2_k127_5962274_7 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 468.0
YYD2_k127_5962274_8 COG0436 Aspartate tyrosine aromatic aminotransferase K14267 - 2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008777 457.0
YYD2_k127_5962274_9 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 417.0
YYD2_k127_5977843_0 COG2030 Acyl dehydratase K14449 - 4.2.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 445.0
YYD2_k127_5977843_1 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 353.0
YYD2_k127_5977843_2 OpgC protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008291 332.0
YYD2_k127_5977843_3 Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP K00868 - 2.7.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000004492 252.0
YYD2_k127_5977843_4 threonine efflux protein - - - 0.0000000000000000000000000000000000000000000000000000002397 200.0
YYD2_k127_5977843_5 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000002813 185.0
YYD2_k127_5977843_6 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000002261 164.0
YYD2_k127_5984700_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0 1778.0
YYD2_k127_5984700_1 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 550.0
YYD2_k127_5984700_10 Protein of unknown function (DUF2848) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001371 283.0
YYD2_k127_5984700_11 FCD K11475 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001346 254.0
YYD2_k127_5984700_12 phosphoribosylanthranilate isomerase activity K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000305 250.0
YYD2_k127_5984700_13 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000001411 233.0
YYD2_k127_5984700_14 Hemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000009517 246.0
YYD2_k127_5984700_15 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000003799 222.0
YYD2_k127_5984700_16 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000002224 189.0
YYD2_k127_5984700_17 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000000000005764 190.0
YYD2_k127_5984700_18 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.00000000000000000000000000000000000000002067 166.0
YYD2_k127_5984700_19 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000002562 121.0
YYD2_k127_5984700_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 536.0
YYD2_k127_5984700_20 - - - - 0.000000000000000000000000598 108.0
YYD2_k127_5984700_21 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000003856 102.0
YYD2_k127_5984700_22 Putative beta-barrel porin 2 - - - 0.0000000003782 68.0
YYD2_k127_5984700_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 485.0
YYD2_k127_5984700_4 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 474.0
YYD2_k127_5984700_5 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 415.0
YYD2_k127_5984700_6 metal-dependent hydrolase of the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 385.0
YYD2_k127_5984700_7 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007423 353.0
YYD2_k127_5984700_8 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 348.0
YYD2_k127_5984700_9 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 295.0
YYD2_k127_599883_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.145e-252 786.0
YYD2_k127_599883_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 4e-220 698.0
YYD2_k127_599883_10 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 287.0
YYD2_k127_599883_11 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001407 252.0
YYD2_k127_599883_12 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.0000000000000000000000000000000000000000000000000000000006466 208.0
YYD2_k127_599883_13 Probable cobalt transporter subunit (CbtA) - - - 0.00000000000000000000000000000000000000000000000000000003219 206.0
YYD2_k127_599883_14 COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 - - 0.0000000000000000000000000000000000000000003435 163.0
YYD2_k127_599883_15 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000002229 153.0
YYD2_k127_599883_16 COG1925 Phosphotransferase system, HPr-related proteins K11189 - - 0.00000000000000000000000001413 113.0
YYD2_k127_599883_2 PAS PAC domain-containing protein - - - 9.811e-208 666.0
YYD2_k127_599883_3 Stimulus-sensing domain K14980 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 543.0
YYD2_k127_599883_4 reductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 511.0
YYD2_k127_599883_5 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 405.0
YYD2_k127_599883_6 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K14981 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 364.0
YYD2_k127_599883_7 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 364.0
YYD2_k127_599883_8 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 309.0
YYD2_k127_599883_9 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 297.0
YYD2_k127_6148_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 4.818e-311 964.0
YYD2_k127_6148_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 533.0
YYD2_k127_6148_10 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000611 106.0
YYD2_k127_6148_11 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000003571 81.0
YYD2_k127_6148_2 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 454.0
YYD2_k127_6148_3 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 355.0
YYD2_k127_6148_4 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 343.0
YYD2_k127_6148_5 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008563 268.0
YYD2_k127_6148_6 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001012 244.0
YYD2_k127_6148_7 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000001248 192.0
YYD2_k127_6148_8 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000002716 172.0
YYD2_k127_6148_9 transcriptional - - - 0.00000000000000000000000000000000009286 139.0
YYD2_k127_6212960_0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 469.0
YYD2_k127_6212960_1 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 374.0
YYD2_k127_6212960_2 Carbon monoxide dehydrogenase operon C protein K21696 GO:0006355,GO:0006808,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 376.0
YYD2_k127_6212960_3 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003223 227.0
YYD2_k127_6212960_4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - - 0.0000000000000000000000000000000000000000000000000000000003021 208.0
YYD2_k127_6212960_5 - - - - 0.000000000000000000009907 97.0
YYD2_k127_6212960_6 Peptidase S24-like - - - 0.00000000000000000005114 91.0
YYD2_k127_6318564_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1056.0
YYD2_k127_6318564_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 4.243e-267 830.0
YYD2_k127_6318564_10 Asp Glu hydantoin racemase K01799 - 5.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 314.0
YYD2_k127_6318564_11 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 314.0
YYD2_k127_6318564_12 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 302.0
YYD2_k127_6318564_13 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 301.0
YYD2_k127_6318564_14 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007825 300.0
YYD2_k127_6318564_15 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001617 280.0
YYD2_k127_6318564_16 Nitrile hydratase, alpha chain K01721,K20807 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000006741 242.0
YYD2_k127_6318564_17 Dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000002331 235.0
YYD2_k127_6318564_18 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.0000000000000000000000000000000000000000000000000005591 189.0
YYD2_k127_6318564_19 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000000000003917 186.0
YYD2_k127_6318564_2 Amidohydrolase family K01464 - 3.5.2.2 8.173e-228 713.0
YYD2_k127_6318564_20 FCD - - - 0.00000000000000000000000000000000000000000000000001543 188.0
YYD2_k127_6318564_21 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000000000008629 149.0
YYD2_k127_6318564_22 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000004359 139.0
YYD2_k127_6318564_23 Belongs to the BolA IbaG family - - - 0.000000000000000000000000000000002249 131.0
YYD2_k127_6318564_24 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000001452 131.0
YYD2_k127_6318564_25 Domain of unknown function (DUF1476) - - - 0.0000000000000000000000000000006781 126.0
YYD2_k127_6318564_26 Putative zinc- or iron-chelating domain - - - 0.000000000000000000000000006398 122.0
YYD2_k127_6318564_27 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000000008798 109.0
YYD2_k127_6318564_28 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000000000000000003475 90.0
YYD2_k127_6318564_29 Glycosyl transferase - - - 0.000000004918 68.0
YYD2_k127_6318564_3 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.231e-214 675.0
YYD2_k127_6318564_30 Ethanolamine utilisation protein EutQ - - - 0.00000001377 63.0
YYD2_k127_6318564_4 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 454.0
YYD2_k127_6318564_5 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 446.0
YYD2_k127_6318564_6 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006485 447.0
YYD2_k127_6318564_7 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 344.0
YYD2_k127_6318564_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007995 345.0
YYD2_k127_6318564_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 328.0
YYD2_k127_6323505_0 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 5.73e-204 646.0
YYD2_k127_6323505_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 578.0
YYD2_k127_6323505_10 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000001594 238.0
YYD2_k127_6323505_11 Squalene/phytoene synthase K21678,K21679 - 2.5.1.103,4.2.3.156 0.000000000000000000000000000000000000000000000000000000000000000000002349 257.0
YYD2_k127_6323505_12 Phytoene synthase K21678 - 2.5.1.103 0.00000000000000000000000000000000000000000000000000000000000001954 229.0
YYD2_k127_6323505_13 Protein of unknown function (DUF498/DUF598) - - - 0.00000000000000000000000000000000000000000008457 162.0
YYD2_k127_6323505_14 Preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000000009091 143.0
YYD2_k127_6323505_15 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000002142 74.0
YYD2_k127_6323505_2 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 444.0
YYD2_k127_6323505_3 ATPase (AAA K06923 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 432.0
YYD2_k127_6323505_4 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 391.0
YYD2_k127_6323505_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
YYD2_k127_6323505_6 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008988 303.0
YYD2_k127_6323505_7 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 295.0
YYD2_k127_6323505_8 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007618 252.0
YYD2_k127_6323505_9 Phytoene squalene synthetase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000001502 254.0
YYD2_k127_6333077_0 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 389.0
YYD2_k127_6333077_1 BFD-like [2Fe-2S] binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001237 243.0
YYD2_k127_6397447_0 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 411.0
YYD2_k127_6397447_1 Glycosyl transferases group 1 K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 408.0
YYD2_k127_6397447_10 Type II secretory pathway, component ExeA - - - 0.000000000000000000000000000005529 139.0
YYD2_k127_6397447_2 dolichol-phosphate mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 325.0
YYD2_k127_6397447_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 329.0
YYD2_k127_6397447_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 312.0
YYD2_k127_6397447_5 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002016 297.0
YYD2_k127_6397447_6 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007171 282.0
YYD2_k127_6397447_7 PFAM glycoside hydrolase, family 1 K05350 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000025 280.0
YYD2_k127_6397447_8 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004112 261.0
YYD2_k127_6397447_9 Protein involved in cellulose biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000285 208.0
YYD2_k127_642412_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1255.0
YYD2_k127_642412_1 cell division K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 318.0
YYD2_k127_642412_10 Helix-turn-helix XRE-family like proteins - - - 0.0000007855 53.0
YYD2_k127_642412_11 Tetratricopeptide TPR_2 repeat protein - - - 0.0001331 52.0
YYD2_k127_642412_2 Protein of unknown function (DUF3445) - - - 0.000000000000000000000000000000000000000000000000000000000000000000002206 245.0
YYD2_k127_642412_3 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000198 237.0
YYD2_k127_642412_4 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000105 231.0
YYD2_k127_642412_5 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000291 213.0
YYD2_k127_642412_6 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000002672 185.0
YYD2_k127_642412_7 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000000525 179.0
YYD2_k127_642412_8 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000008835 171.0
YYD2_k127_642412_9 TIGRFAM MJ0042 family finger-like protein - - - 0.00000000000000000000006836 109.0
YYD2_k127_647639_0 Histidine kinase A domain protein - - - 0.0 1155.0
YYD2_k127_647639_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 8.588e-293 906.0
YYD2_k127_647639_10 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 427.0
YYD2_k127_647639_11 Belongs to the ABC transporter superfamily K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 391.0
YYD2_k127_647639_12 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 380.0
YYD2_k127_647639_13 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 301.0
YYD2_k127_647639_14 (Lipo)protein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000002075 231.0
YYD2_k127_647639_15 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000000000000000000000000000000000000000000000001841 181.0
YYD2_k127_647639_16 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000005698 175.0
YYD2_k127_647639_17 Methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000005369 169.0
YYD2_k127_647639_18 - - - - 0.0000000000000000000000000000001016 134.0
YYD2_k127_647639_19 Domain of unknown function (DUF4212) - - - 0.0000000000000000000000000005109 117.0
YYD2_k127_647639_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 4.248e-259 810.0
YYD2_k127_647639_20 - K02221 - - 0.0000000000000000000676 93.0
YYD2_k127_647639_21 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000305 75.0
YYD2_k127_647639_23 - - - - 0.0000001112 61.0
YYD2_k127_647639_24 Major facilitator superfamily - - - 0.0000008451 61.0
YYD2_k127_647639_26 methyltransferase - - - 0.000007753 57.0
YYD2_k127_647639_3 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 594.0
YYD2_k127_647639_4 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 555.0
YYD2_k127_647639_5 EXOIII K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 556.0
YYD2_k127_647639_6 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 442.0
YYD2_k127_647639_7 cobalamin synthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 439.0
YYD2_k127_647639_8 Binding-protein-dependent transport system inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 429.0
YYD2_k127_647639_9 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 422.0
YYD2_k127_700747_0 Transport of potassium into the cell K03549 - - 1.927e-209 669.0
YYD2_k127_700747_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000194 245.0
YYD2_k127_700747_2 Phage prohead protease, HK97 family - - - 0.00000000000000000000000000000000000003694 156.0
YYD2_k127_700747_3 GYD domain - - - 0.00000000000000000000000005904 121.0
YYD2_k127_700747_4 Phage portal protein - - - 0.000000000000000000001014 100.0
YYD2_k127_714294_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 7.466e-206 658.0
YYD2_k127_714294_1 NMT1-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 314.0
YYD2_k127_762355_0 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit K15751 - 1.14.12.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 481.0
YYD2_k127_762355_1 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 363.0
YYD2_k127_762355_10 Permease MlaE K02066 - - 0.00000000000000000000003456 99.0
YYD2_k127_762355_2 hydrolase activity, acting on ester bonds K10216,K15756 - 3.7.1.13,3.7.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 320.0
YYD2_k127_762355_3 Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols K04101,K15755 - 1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 311.0
YYD2_k127_762355_4 Oxidoreductase FAD-binding domain K15765 - 1.18.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001443 275.0
YYD2_k127_762355_5 MlaD protein K02067,K06192 - - 0.00000000000000000000000000000000000000000000000000000000000000000005726 243.0
YYD2_k127_762355_6 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000000000000000000000000000000000000139 204.0
YYD2_k127_762355_7 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000109 184.0
YYD2_k127_762355_8 Sterol carrier protein - - - 0.000000000000000000000000008215 123.0
YYD2_k127_762355_9 Rieske-like [2Fe-2S] domain - - - 0.0000000000000000000000007519 117.0
YYD2_k127_762783_0 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 344.0
YYD2_k127_762783_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003786 242.0
YYD2_k127_762783_2 PFAM Bacterial protein of - - - 0.000000000000000000000000000000000000000000000000000000000003215 218.0
YYD2_k127_762783_3 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000001212 159.0
YYD2_k127_770457_0 4Fe-4S binding domain - - - 4.392e-285 894.0
YYD2_k127_770457_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 545.0
YYD2_k127_770457_10 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000002374 114.0
YYD2_k127_770457_11 Polymer-forming cytoskeletal - - - 0.0000000000000381 76.0
YYD2_k127_770457_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 443.0
YYD2_k127_770457_3 Bacterial extracellular solute-binding protein K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 421.0
YYD2_k127_770457_4 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000782 361.0
YYD2_k127_770457_5 ABC-type tungstate transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 303.0
YYD2_k127_770457_6 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002545 287.0
YYD2_k127_770457_7 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004228 289.0
YYD2_k127_770457_8 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000003309 256.0
YYD2_k127_770457_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08234 - - 0.000000000000000000000000000000000000000000000000278 179.0
YYD2_k127_79879_0 lysyl-tRNA synthetase K04568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 436.0
YYD2_k127_79879_1 - - - - 0.00000000000000000000000000005805 121.0
YYD2_k127_79879_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000162 116.0
YYD2_k127_818181_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1422.0
YYD2_k127_818181_1 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 2.037e-223 700.0
YYD2_k127_818181_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 433.0
YYD2_k127_818181_3 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006986 285.0
YYD2_k127_818181_4 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000002668 184.0
YYD2_k127_818181_5 NADH ubiquinone oxidoreductase 17.2 kD subunit - - - 0.0000000000000000000000000000000000000005751 153.0
YYD2_k127_818181_6 protein conserved in bacteria - - - 0.00000000000000000000000000000000000002032 152.0
YYD2_k127_818181_7 Amidase - - - 0.00000000001935 76.0
YYD2_k127_820585_0 Dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 462.0
YYD2_k127_820585_1 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003326 242.0
YYD2_k127_820585_2 Glycosyl transferase family 21 - - - 0.0000000846 56.0
YYD2_k127_860381_0 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 479.0
YYD2_k127_860381_1 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005467 463.0
YYD2_k127_860381_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 358.0
YYD2_k127_860381_3 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 308.0
YYD2_k127_860381_4 transcriptional regulator K07736 - - 0.000000000000000000000000000000000000000000000000000000000000000004418 230.0
YYD2_k127_860381_5 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000000000008402 206.0
YYD2_k127_860381_6 Staphylococcal nuclease homologue - - - 0.0000000000000000000000000000000000000000000000000002361 202.0
YYD2_k127_860381_7 Lipid A 3-O-deacylase (PagL) - - - 0.00000000000000000000000000000000004931 141.0
YYD2_k127_860381_8 oxidation-reduction process - - - 0.00000000000000004189 87.0
YYD2_k127_868149_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.0 1151.0
YYD2_k127_868149_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 9.829e-224 713.0
YYD2_k127_868149_10 COG0694 Thioredoxin-like proteins and domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 284.0
YYD2_k127_868149_11 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004286 276.0
YYD2_k127_868149_12 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000001326 271.0
YYD2_k127_868149_13 Putative transmembrane protein (Alph_Pro_TM) - - - 0.0000000000000000000000000000000000000000000000000000000000000000003315 258.0
YYD2_k127_868149_14 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000001075 215.0
YYD2_k127_868149_15 ROS/MUCR transcriptional regulator protein - - - 0.0000000000000000000000000000000000000000000000000000007256 195.0
YYD2_k127_868149_16 FlgJ-related protein K03796 - - 0.0000000000000000000000000000000000000000000000000003039 198.0
YYD2_k127_868149_17 universal stress protein UspA and related nucleotide-binding - - - 0.0000000000000000000000000000000000000000000000000005633 190.0
YYD2_k127_868149_18 ATP-dependent Clp protease proteolytic subunit - - - 0.0000000000000000000000000000000000000000000005399 175.0
YYD2_k127_868149_19 Cyclic nucleotide-binding domain K21563 - - 0.0000000000000000000000000000000000000000221 162.0
YYD2_k127_868149_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 552.0
YYD2_k127_868149_20 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.0000000000000000000000000000000000000001014 159.0
YYD2_k127_868149_21 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000000000000000005017 146.0
YYD2_k127_868149_22 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000003869 123.0
YYD2_k127_868149_23 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000002451 117.0
YYD2_k127_868149_24 Ankyrin repeat - - - 0.0000000000000000000001551 108.0
YYD2_k127_868149_3 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 546.0
YYD2_k127_868149_4 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 545.0
YYD2_k127_868149_5 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008178 409.0
YYD2_k127_868149_6 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007229 426.0
YYD2_k127_868149_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 387.0
YYD2_k127_868149_8 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 344.0
YYD2_k127_868149_9 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 344.0
YYD2_k127_869043_0 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 402.0
YYD2_k127_869043_1 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 282.0
YYD2_k127_869043_2 Esterase-like activity of phytase - - - 0.0000000000000000000000000000000000000000000000000000000001261 216.0
YYD2_k127_869043_3 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.00000000000000000000000000000000000004963 147.0
YYD2_k127_869043_4 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000000000000000000001297 136.0
YYD2_k127_898202_0 Class II Aldolase and Adducin N-terminal domain - - - 1.545e-292 912.0
YYD2_k127_898202_1 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 611.0
YYD2_k127_898202_10 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 299.0
YYD2_k127_898202_11 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 310.0
YYD2_k127_898202_12 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001298 280.0
YYD2_k127_898202_13 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007343 277.0
YYD2_k127_898202_14 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001365 273.0
YYD2_k127_898202_15 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000152 259.0
YYD2_k127_898202_16 Putative bacterial sensory transduction regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008971 240.0
YYD2_k127_898202_17 Aminoacyl-tRNA editing domain - - - 0.0000000000000000000000000000000000000000000000000000001383 200.0
YYD2_k127_898202_18 - - - - 0.000000000000000000000000000000000000000000000000006512 189.0
YYD2_k127_898202_19 transcriptional regulator - - - 0.00000000000000000000000000000000000000005496 159.0
YYD2_k127_898202_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 524.0
YYD2_k127_898202_20 Phasin protein - - - 0.000000000000000000000000000000001394 136.0
YYD2_k127_898202_21 Membrane fusogenic activity K09806 - - 0.000000000000000001067 93.0
YYD2_k127_898202_22 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000005009 87.0
YYD2_k127_898202_24 Glycosyl transferase, family 2 - - - 0.0000000411 66.0
YYD2_k127_898202_25 gnat family K02348 - - 0.0000005972 53.0
YYD2_k127_898202_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 511.0
YYD2_k127_898202_4 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 448.0
YYD2_k127_898202_5 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 356.0
YYD2_k127_898202_6 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 347.0
YYD2_k127_898202_7 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 338.0
YYD2_k127_898202_8 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003544 327.0
YYD2_k127_898202_9 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 301.0
YYD2_k127_909185_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 5.319e-303 946.0
YYD2_k127_909185_1 glutamine synthetase K01915 - 6.3.1.2 2.272e-251 785.0
YYD2_k127_909185_10 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 456.0
YYD2_k127_909185_11 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 435.0
YYD2_k127_909185_12 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 411.0
YYD2_k127_909185_13 Protein of unknown function (DUF1800) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 417.0
YYD2_k127_909185_14 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 399.0
YYD2_k127_909185_15 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 369.0
YYD2_k127_909185_16 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 346.0
YYD2_k127_909185_17 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 351.0
YYD2_k127_909185_18 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 325.0
YYD2_k127_909185_19 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 296.0
YYD2_k127_909185_2 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 4.135e-245 772.0
YYD2_k127_909185_20 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 294.0
YYD2_k127_909185_21 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 287.0
YYD2_k127_909185_22 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007225 267.0
YYD2_k127_909185_23 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002792 256.0
YYD2_k127_909185_24 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000004729 226.0
YYD2_k127_909185_25 Belongs to the P(II) protein family K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.00000000000000000000000000000000000000000000000000000000001998 210.0
YYD2_k127_909185_26 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000000000000004692 211.0
YYD2_k127_909185_27 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000000000000000005184 202.0
YYD2_k127_909185_28 PFAM CBS domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000006946 207.0
YYD2_k127_909185_29 Thioesterase superfamily K10806 - - 0.000000000000000000000000000000000000000000000000000007201 192.0
YYD2_k127_909185_3 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K08295 - 6.2.1.32 1.171e-227 717.0
YYD2_k127_909185_30 COG0346 Lactoylglutathione lyase and related lyases - - - 0.000000000000000000000000000000000000000000000000001585 190.0
YYD2_k127_909185_31 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000000000000001046 183.0
YYD2_k127_909185_32 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000001903 163.0
YYD2_k127_909185_33 COG1335 Amidases related to nicotinamidase - - - 0.0000000000000000000000000000000000000002235 158.0
YYD2_k127_909185_34 COG1522 Transcriptional regulators - - - 0.0000000000000000000000000000000006096 132.0
YYD2_k127_909185_35 - - - - 0.000000000000000000000000000000001849 139.0
YYD2_k127_909185_37 Protein required for attachment to host cells - - - 0.0000000000000000000001921 103.0
YYD2_k127_909185_38 - - - - 0.0000000000002365 78.0
YYD2_k127_909185_39 - - - - 0.00000001049 63.0
YYD2_k127_909185_4 Aminotransferase class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 591.0
YYD2_k127_909185_41 Heavy-metal resistance - - - 0.00001138 54.0
YYD2_k127_909185_5 Belongs to the DEAD box helicase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 589.0
YYD2_k127_909185_6 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 560.0
YYD2_k127_909185_7 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 513.0
YYD2_k127_909185_8 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 484.0
YYD2_k127_909185_9 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 472.0
YYD2_k127_950049_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 6.662e-277 866.0
YYD2_k127_950049_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.441e-224 702.0
YYD2_k127_950049_10 Pfam:DUF955 K07110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 499.0
YYD2_k127_950049_11 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 479.0
YYD2_k127_950049_12 AAA domain K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 481.0
YYD2_k127_950049_13 COG3540 Phosphodiesterase alkaline phosphatase D K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 448.0
YYD2_k127_950049_14 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 430.0
YYD2_k127_950049_15 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 424.0
YYD2_k127_950049_16 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 402.0
YYD2_k127_950049_17 (Fe-S) oxidoreductase K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 396.0
YYD2_k127_950049_18 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 403.0
YYD2_k127_950049_19 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 378.0
YYD2_k127_950049_2 Adenylate cyclase - - - 1.949e-222 703.0
YYD2_k127_950049_20 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008902 370.0
YYD2_k127_950049_21 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 368.0
YYD2_k127_950049_22 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 340.0
YYD2_k127_950049_23 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 336.0
YYD2_k127_950049_24 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 340.0
YYD2_k127_950049_25 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007702 320.0
YYD2_k127_950049_26 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 315.0
YYD2_k127_950049_27 signal transduction protein containing sensor and EAL domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 307.0
YYD2_k127_950049_28 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 284.0
YYD2_k127_950049_29 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 284.0
YYD2_k127_950049_3 LUD domain K18929 - - 7.223e-222 710.0
YYD2_k127_950049_30 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001586 282.0
YYD2_k127_950049_31 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001072 287.0
YYD2_k127_950049_32 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005866 276.0
YYD2_k127_950049_33 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006136 246.0
YYD2_k127_950049_34 Belongs to the short-chain dehydrogenases reductases (SDR) family K04786,K13611,K13612,K13613,K13614,K16216 - 1.1.1.320 0.000000000000000000000000000000000000000000000000000000000000000000009176 252.0
YYD2_k127_950049_35 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000009229 237.0
YYD2_k127_950049_36 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000001066 228.0
YYD2_k127_950049_37 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000001576 227.0
YYD2_k127_950049_38 LUD domain K00782 - - 0.00000000000000000000000000000000000000000000000000000000000001575 230.0
YYD2_k127_950049_39 Belongs to the phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000348 211.0
YYD2_k127_950049_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.2e-218 683.0
YYD2_k127_950049_40 OsmC-like protein K06889,K07397 - - 0.0000000000000000000000000000000000000000000000000000000000593 208.0
YYD2_k127_950049_41 Ferredoxin, 2Fe-2S - - - 0.00000000000000000000000000000000000000000000000000007934 190.0
YYD2_k127_950049_42 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000001113 196.0
YYD2_k127_950049_43 Cupin domain - - - 0.00000000000000000000000000000000000000000000000001872 194.0
YYD2_k127_950049_44 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.0000000000000000000000000000000000000000000000001646 181.0
YYD2_k127_950049_45 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000000000000000342 172.0
YYD2_k127_950049_46 PFAM YbaK prolyl-tRNA K19055 - - 0.00000000000000000000000000000000000000000008604 165.0
YYD2_k127_950049_47 Methyltransferase domain - - - 0.0000000000000000000000000000000000000001644 154.0
YYD2_k127_950049_48 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000009926 156.0
YYD2_k127_950049_49 PFAM MaoC domain protein dehydratase - - - 0.0000000000000000000000000000000000003437 155.0
YYD2_k127_950049_5 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 1.154e-211 665.0
YYD2_k127_950049_50 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.0000000000000000000000000000000000006671 142.0
YYD2_k127_950049_51 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000004713 142.0
YYD2_k127_950049_52 Putative cyclase - - - 0.0000000000000000000000000000002043 129.0
YYD2_k127_950049_53 PAS domain - - - 0.0000000000000000000000000000002114 130.0
YYD2_k127_950049_54 protein conserved in bacteria - - - 0.0000000000000000000000000000004525 132.0
YYD2_k127_950049_55 domain, Protein - - - 0.0000000000000000000000000002045 119.0
YYD2_k127_950049_56 PFAM Transglycosylase-associated protein - - - 0.0000000000000000001617 91.0
YYD2_k127_950049_57 nUDIX hydrolase - - - 0.00000000000000001875 86.0
YYD2_k127_950049_58 Protein of unknown function (DUF2628) - - - 0.000000000003979 78.0
YYD2_k127_950049_59 Transcriptional regulator - - - 0.000000003915 64.0
YYD2_k127_950049_6 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 5.591e-201 638.0
YYD2_k127_950049_61 PFAM Extensin family protein - - - 0.0001671 49.0
YYD2_k127_950049_7 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009912 595.0
YYD2_k127_950049_8 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 567.0
YYD2_k127_950049_9 membrane-bound lytic murein transglycosylase K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 503.0
YYD2_k127_950218_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 1.24e-256 821.0
YYD2_k127_950218_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.141e-211 676.0
YYD2_k127_950218_10 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 315.0
YYD2_k127_950218_11 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002661 293.0
YYD2_k127_950218_12 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000000000000000000000001443 158.0
YYD2_k127_950218_13 oxidation-reduction process - - - 0.00000000000000000000000000000000000000003412 157.0
YYD2_k127_950218_14 conserved protein, contains double-stranded beta-helix domain - - - 0.000000000000000000000000000000000001967 143.0
YYD2_k127_950218_15 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000003404 130.0
YYD2_k127_950218_16 ABC transporter substrate binding protein K01989 - - 0.000000000000000000001394 96.0
YYD2_k127_950218_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 1.784e-199 657.0
YYD2_k127_950218_3 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004582 482.0
YYD2_k127_950218_4 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000577 487.0
YYD2_k127_950218_5 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 447.0
YYD2_k127_950218_6 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 426.0
YYD2_k127_950218_7 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K05712 - 1.14.13.127 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 427.0
YYD2_k127_950218_8 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 336.0
YYD2_k127_950218_9 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007972 317.0
YYD2_k127_980011_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.701e-279 866.0
YYD2_k127_980011_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 1.574e-258 801.0
YYD2_k127_980011_10 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 316.0
YYD2_k127_980011_11 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.0000000000000000000000000000000000000000000002426 168.0
YYD2_k127_980011_12 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000001191 151.0
YYD2_k127_980011_13 Septum formation initiator - - - 0.0000000000000000000000001505 109.0
YYD2_k127_980011_14 PAS domain - - - 0.000000000000003125 82.0
YYD2_k127_980011_2 transport system fused permease components - - - 2.562e-243 768.0
YYD2_k127_980011_3 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 9.985e-211 662.0
YYD2_k127_980011_4 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 1.351e-201 636.0
YYD2_k127_980011_5 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 512.0
YYD2_k127_980011_6 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 498.0
YYD2_k127_980011_7 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 506.0
YYD2_k127_980011_8 Belongs to the KdsA family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 457.0
YYD2_k127_980011_9 TRAP transporter solute receptor TAXI family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 422.0
YYD2_k127_983792_0 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 2.396e-264 854.0
YYD2_k127_983792_1 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 2.167e-226 712.0
YYD2_k127_983792_10 Tryptophan halogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 453.0
YYD2_k127_983792_11 COG4608 ABC-type oligopeptide transport system, ATPase component K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 445.0
YYD2_k127_983792_12 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004911 447.0
YYD2_k127_983792_13 Peptidase family M28 K02083 - 3.5.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 446.0
YYD2_k127_983792_14 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 411.0
YYD2_k127_983792_15 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 406.0
YYD2_k127_983792_16 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 413.0
YYD2_k127_983792_17 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 351.0
YYD2_k127_983792_18 PFAM ABC transporter K02052,K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 351.0
YYD2_k127_983792_19 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006345 351.0
YYD2_k127_983792_2 Peptidase family M20/M25/M40 - - - 2.598e-219 690.0
YYD2_k127_983792_20 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008025 314.0
YYD2_k127_983792_21 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 300.0
YYD2_k127_983792_22 PFAM 20S proteasome, A and B subunits K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001263 279.0
YYD2_k127_983792_23 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004743 250.0
YYD2_k127_983792_24 Bacterial lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002994 248.0
YYD2_k127_983792_25 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003292 242.0
YYD2_k127_983792_26 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000004718 225.0
YYD2_k127_983792_27 Beta-ketoacyl synthase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000001679 228.0
YYD2_k127_983792_28 SMART protein phosphatase 2C domain protein K01090 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000009863 216.0
YYD2_k127_983792_29 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000005403 198.0
YYD2_k127_983792_3 Circularly permuted ATP-grasp type 2 - - - 4.643e-217 682.0
YYD2_k127_983792_30 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000004432 197.0
YYD2_k127_983792_31 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000003611 184.0
YYD2_k127_983792_32 allantoin biosynthetic process K13485 - 4.1.1.97 0.000000000000000000000000000000000000000000000281 181.0
YYD2_k127_983792_33 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.0000000000000000000000000000000000000000514 162.0
YYD2_k127_983792_34 Histidine kinase - - - 0.0000000000000000000000000000000000003202 163.0
YYD2_k127_983792_35 dehydratase - - - 0.0000000000000000000000000000002515 133.0
YYD2_k127_983792_36 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000001014 121.0
YYD2_k127_983792_37 Phosphopantetheine attachment site K02078 - - 0.000000000000000000000000003256 113.0
YYD2_k127_983792_38 - - - - 0.0000000000000000000000001803 110.0
YYD2_k127_983792_39 DUF218 domain - - - 0.00000000000000000000009266 110.0
YYD2_k127_983792_4 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K00830,K00839 - 2.6.1.112,2.6.1.44,2.6.1.45,2.6.1.51 8.796e-194 616.0
YYD2_k127_983792_40 Lysin motif - - - 0.0000000000000000000002604 111.0
YYD2_k127_983792_41 UPF0391 membrane protein - - - 0.00000000000001905 74.0
YYD2_k127_983792_42 AMP-binding enzyme - - - 0.00000000000002471 77.0
YYD2_k127_983792_43 - - - - 0.000000000003026 70.0
YYD2_k127_983792_44 Acetyltransferase (GNAT) family - - - 0.000000006421 67.0
YYD2_k127_983792_45 beta-lactamase activity K07126 GO:0006950,GO:0006979,GO:0008150,GO:0050896 - 0.00000005973 63.0
YYD2_k127_983792_46 - - - - 0.0001124 46.0
YYD2_k127_983792_5 COG0515 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 517.0
YYD2_k127_983792_6 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 511.0
YYD2_k127_983792_7 Polysaccharide deacetylase K01452 - 3.5.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 491.0
YYD2_k127_983792_8 MMPL family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 504.0
YYD2_k127_983792_9 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008131 454.0
YYD2_k127_993586_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 1.049e-224 708.0
YYD2_k127_993586_1 ABC-type uncharacterized transport system - - - 1.299e-206 661.0
YYD2_k127_993586_10 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005006 266.0
YYD2_k127_993586_11 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002182 263.0
YYD2_k127_993586_12 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000001431 244.0
YYD2_k127_993586_13 Domain of unknown function (DUF4340) - - - 0.000000000000000000000000000000000000000000000000000000000000007586 229.0
YYD2_k127_993586_14 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000001073 192.0
YYD2_k127_993586_15 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000000000000000001569 193.0
YYD2_k127_993586_16 Glycosyl transferase family group 2 K07011 - - 0.00000000000000000000000000000000000103 153.0
YYD2_k127_993586_17 Ribonuclease B OB domain K03704 - - 0.00000000000000000000000000000002652 132.0
YYD2_k127_993586_18 protein conserved in bacteria - - - 0.000000000000000000000000000004776 123.0
YYD2_k127_993586_19 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000001473 123.0
YYD2_k127_993586_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 475.0
YYD2_k127_993586_21 Cold shock K03704 - - 0.0000000000000000000004325 98.0
YYD2_k127_993586_22 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.000000000002457 78.0
YYD2_k127_993586_23 Protein of unknown function (FYDLN_acid) - - - 0.00000000005847 67.0
YYD2_k127_993586_24 - - - - 0.000001351 52.0
YYD2_k127_993586_25 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00007329 54.0
YYD2_k127_993586_3 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000705 393.0
YYD2_k127_993586_4 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 368.0
YYD2_k127_993586_5 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 337.0
YYD2_k127_993586_6 GMC oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 346.0
YYD2_k127_993586_7 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 346.0
YYD2_k127_993586_8 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 321.0
YYD2_k127_993586_9 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 - 3.5.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000134 277.0