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Overview

ID MAG04644
Name YYD3_bin.1
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family SG8-39
Genus SCGC-AG-212-J23
Species SCGC-AG-212-J23 sp025929745
Assembly information
Completeness (%) 92.17
Contamination (%) 3.01
GC content (%) 66.0
N50 (bp) 8,526
Genome size (bp) 3,116,924

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3406

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1045157_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 7.443e-294 914.0
YYD3_k127_1045157_1 Protein of unknown function (DUF3141) - - - 7.62e-293 917.0
YYD3_k127_1045157_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 530.0
YYD3_k127_1045157_3 phosphate K00625 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005947 434.0
YYD3_k127_1045157_4 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 414.0
YYD3_k127_1045157_5 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003942 272.0
YYD3_k127_1045157_6 - - - - 0.00000000000002762 75.0
YYD3_k127_1045157_7 - - - - 0.000000000001037 72.0
YYD3_k127_1063336_0 ABC transporter C-terminal domain K15738 - - 1.868e-202 645.0
YYD3_k127_1063336_1 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 345.0
YYD3_k127_1063336_2 acetylesterase activity K01046 - 3.1.1.3 0.000000000000000000000000000000000000000000000000000000001854 210.0
YYD3_k127_1063336_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000005223 153.0
YYD3_k127_1063336_4 restriction endonuclease K07448 - - 0.000000000000000000000000005027 114.0
YYD3_k127_1063336_5 PIN domain - - - 0.0000000000000000000001056 108.0
YYD3_k127_1063336_6 Major Facilitator Superfamily - - - 0.00000000000000000003355 102.0
YYD3_k127_1063336_8 membrane transporter protein K07090 - - 0.0000000000000004429 87.0
YYD3_k127_1063336_9 Periplasmic or secreted lipoprotein - - - 0.00000003048 61.0
YYD3_k127_1074493_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 402.0
YYD3_k127_1074493_1 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 398.0
YYD3_k127_1074493_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 334.0
YYD3_k127_1074493_3 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 310.0
YYD3_k127_1074493_4 Dehydrogenase K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000001148 235.0
YYD3_k127_1074493_5 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000005251 216.0
YYD3_k127_1074493_6 haloacid dehalogenase - - - 0.0000000000000000000000000997 107.0
YYD3_k127_1084287_0 poly(R)-hydroxyalkanoic acid synthase K03821 - - 3.089e-226 709.0
YYD3_k127_1084287_1 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 4.785e-198 623.0
YYD3_k127_1084287_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 357.0
YYD3_k127_1084287_3 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000008231 156.0
YYD3_k127_1084287_4 transcriptional - - - 0.00000000000000000000000000000000000006391 145.0
YYD3_k127_1084287_5 Thioesterase-like superfamily K07107 - - 0.00000000000000007088 89.0
YYD3_k127_1084287_6 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00000001049 63.0
YYD3_k127_1084287_7 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.00000004968 62.0
YYD3_k127_1107203_0 KaiC K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004836 591.0
YYD3_k127_1107203_1 Major Facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 505.0
YYD3_k127_1107203_2 Tartrate dehydrogenase K07246 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 485.0
YYD3_k127_1107203_3 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 382.0
YYD3_k127_1107203_4 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 353.0
YYD3_k127_1107203_5 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 308.0
YYD3_k127_1107203_6 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 287.0
YYD3_k127_1107203_7 Glycoprotease family K14742 - - 0.0000000000000000000000000000000000000000000000000000000008495 207.0
YYD3_k127_1107203_8 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000001659 204.0
YYD3_k127_1107203_9 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000000000000007227 151.0
YYD3_k127_1159608_0 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 2.014e-269 840.0
YYD3_k127_1159608_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000001496 208.0
YYD3_k127_1159608_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.00000000000000000000000000000000000000000000000003454 188.0
YYD3_k127_1159608_3 Domain of unknown function (DUF3394) - - - 0.00000000006714 64.0
YYD3_k127_1159915_0 glycolate oxidase subunit GlcD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 524.0
YYD3_k127_1159915_1 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 449.0
YYD3_k127_1159915_2 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009497 289.0
YYD3_k127_1159915_3 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000005625 180.0
YYD3_k127_1159915_4 Redoxin domain protein - - - 0.0000000000000000000000000000000001603 145.0
YYD3_k127_1159915_5 Receptor family ligand binding region K01999 - - 0.00000000000000000648 96.0
YYD3_k127_1159915_6 Major Facilitator Superfamily - - - 0.0000000000001885 78.0
YYD3_k127_1168322_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 582.0
YYD3_k127_1168322_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004695 494.0
YYD3_k127_1168322_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 458.0
YYD3_k127_1168322_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 305.0
YYD3_k127_1168322_4 Belongs to the CarB family K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 300.0
YYD3_k127_1168322_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008835 276.0
YYD3_k127_1168322_6 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000006468 218.0
YYD3_k127_1168322_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.000000000000000000000000162 116.0
YYD3_k127_1168322_8 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000163 117.0
YYD3_k127_1180211_0 Methionine synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009416 471.0
YYD3_k127_1180211_1 FAD binding domain K00480 - 1.14.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 433.0
YYD3_k127_1180211_2 Major facilitator superfamily K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 349.0
YYD3_k127_1180211_3 Adenylate cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005604 302.0
YYD3_k127_1180211_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001769 278.0
YYD3_k127_1180211_5 Esterase PHB depolymerase K05973 - 3.1.1.75 0.000000000000000000000000000000000000000000000000000001823 204.0
YYD3_k127_1180211_6 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.0001496 44.0
YYD3_k127_1181929_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1566.0
YYD3_k127_1181929_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1452.0
YYD3_k127_1181929_10 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000007639 237.0
YYD3_k127_1181929_11 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000002215 216.0
YYD3_k127_1181929_12 transcriptional regulator K07734 - - 0.00000000000000000000000000000000000000000000000006302 188.0
YYD3_k127_1181929_13 - - - - 0.000000000000000000000000000000000000000000000001294 179.0
YYD3_k127_1181929_14 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000001254 166.0
YYD3_k127_1181929_15 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000032 135.0
YYD3_k127_1181929_16 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000001059 113.0
YYD3_k127_1181929_2 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 575.0
YYD3_k127_1181929_3 FAD binding domain K20940 - 1.14.13.218 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008983 544.0
YYD3_k127_1181929_4 Periplasmic domain of Sensor histidine kinase RisS K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004673 390.0
YYD3_k127_1181929_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003582 347.0
YYD3_k127_1181929_6 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 327.0
YYD3_k127_1181929_7 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000104 295.0
YYD3_k127_1181929_8 Permeases of the drug metabolite transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002524 278.0
YYD3_k127_1181929_9 PFAM Haloacid dehalogenase domain protein hydrolase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003676 287.0
YYD3_k127_1186764_0 COG0467 RecA-superfamily ATPases implicated in signal K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008976 607.0
YYD3_k127_1186764_1 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 563.0
YYD3_k127_1186764_10 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000009244 242.0
YYD3_k127_1186764_11 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000004442 235.0
YYD3_k127_1186764_12 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000008985 195.0
YYD3_k127_1186764_13 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000001351 180.0
YYD3_k127_1186764_14 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000001898 181.0
YYD3_k127_1186764_15 carbon monoxide dehydrogenase K09386 - - 0.000000000000000000000000000000000000000000000001617 180.0
YYD3_k127_1186764_16 Protein of unknown function (DUF3237) - - - 0.000000000000000000000000000000000000000000000001846 181.0
YYD3_k127_1186764_17 Electron transfer DM13 - - - 0.0000000000000000000000000000000000000000000004442 175.0
YYD3_k127_1186764_18 Belongs to the UPF0307 family K09889 - - 0.000000000000000000000000000000000000005149 151.0
YYD3_k127_1186764_19 but contains a N-term CheY-like response regulator receiver domain and C-term adenylyl guanylyl cyclase catalytic domain - - - 0.00000000000018 78.0
YYD3_k127_1186764_2 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 535.0
YYD3_k127_1186764_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 414.0
YYD3_k127_1186764_4 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005526 420.0
YYD3_k127_1186764_5 VWA domain containing CoxE-like protein K07161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 424.0
YYD3_k127_1186764_6 molybdenum cofactor K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 289.0
YYD3_k127_1186764_7 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008962 269.0
YYD3_k127_1186764_8 Threonyl and Alanyl tRNA synthetase second additional domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001679 259.0
YYD3_k127_1186764_9 Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005215 257.0
YYD3_k127_1204718_0 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 406.0
YYD3_k127_1204718_1 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 345.0
YYD3_k127_1204718_2 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002517 267.0
YYD3_k127_1204918_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 443.0
YYD3_k127_1204918_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 333.0
YYD3_k127_1204918_10 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000003875 183.0
YYD3_k127_1204918_11 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000000005656 173.0
YYD3_k127_1204918_12 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000002898 161.0
YYD3_k127_1204918_13 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000001318 147.0
YYD3_k127_1204918_14 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000000000000001142 141.0
YYD3_k127_1204918_15 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000258 138.0
YYD3_k127_1204918_16 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000008032 120.0
YYD3_k127_1204918_17 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000001338 83.0
YYD3_k127_1204918_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001051 286.0
YYD3_k127_1204918_3 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001051 276.0
YYD3_k127_1204918_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002357 251.0
YYD3_k127_1204918_5 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000311 234.0
YYD3_k127_1204918_6 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000000001029 221.0
YYD3_k127_1204918_7 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000119 211.0
YYD3_k127_1204918_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000000000001611 213.0
YYD3_k127_1204918_9 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000000000004358 182.0
YYD3_k127_121187_0 Putative diguanylate phosphodiesterase - - - 1.235e-194 649.0
YYD3_k127_121187_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000003297 260.0
YYD3_k127_121187_2 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001318 261.0
YYD3_k127_121187_3 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000004937 231.0
YYD3_k127_121187_4 GMC oxidoreductase K00108 - 1.1.99.1 0.000000000000000000000000000000000000000000000000009877 184.0
YYD3_k127_121187_5 Tetratricopeptide repeat - - - 0.00000000000000000000000000001903 128.0
YYD3_k127_121187_6 COG0457 FOG TPR repeat - - - 0.000000000000000000000000007373 118.0
YYD3_k127_121187_7 - - - - 0.00000000000000000000000001956 120.0
YYD3_k127_121187_8 Protein of unknown function (DUF3301) - - - 0.00000000000000000000001456 103.0
YYD3_k127_121187_9 PFAM sulfatase - - - 0.0000000000001765 71.0
YYD3_k127_1212073_0 Sodium/calcium exchanger protein K07300 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 441.0
YYD3_k127_1212073_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 355.0
YYD3_k127_1212073_2 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 320.0
YYD3_k127_1212073_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 308.0
YYD3_k127_1212073_4 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001942 259.0
YYD3_k127_1212073_5 [2Fe-2S] binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000008099 228.0
YYD3_k127_1212073_6 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000002887 178.0
YYD3_k127_1212073_7 Glycine zipper - - - 0.00000000000000000000000000000000000000000000003627 177.0
YYD3_k127_1212073_8 histidine kinase A domain protein - - - 0.00000000000000000003596 94.0
YYD3_k127_1212073_9 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0001273 45.0
YYD3_k127_1216224_0 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 361.0
YYD3_k127_1216224_1 Right handed beta helix region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 317.0
YYD3_k127_1216224_2 type II secretion system protein E K02454,K02652,K12276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001218 273.0
YYD3_k127_1216224_3 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000007296 174.0
YYD3_k127_1218580_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 3.88e-244 767.0
YYD3_k127_1218580_1 Type II and III secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009714 544.0
YYD3_k127_1218580_2 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002573 517.0
YYD3_k127_1218580_3 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 412.0
YYD3_k127_1218580_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000001694 190.0
YYD3_k127_1218580_5 type II secretion system protein K02653 - - 0.00000001996 60.0
YYD3_k127_1220612_0 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.859e-242 754.0
YYD3_k127_1220612_1 Mur ligase family, catalytic domain K02558 - 6.3.2.45 5.154e-202 640.0
YYD3_k127_1220612_10 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 291.0
YYD3_k127_1220612_11 TonB family K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009114 289.0
YYD3_k127_1220612_12 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007092 287.0
YYD3_k127_1220612_13 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001694 268.0
YYD3_k127_1220612_14 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000009177 264.0
YYD3_k127_1220612_15 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000162 246.0
YYD3_k127_1220612_16 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000804 237.0
YYD3_k127_1220612_17 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000000000000000000000006436 220.0
YYD3_k127_1220612_18 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000188 205.0
YYD3_k127_1220612_19 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000000000003317 195.0
YYD3_k127_1220612_2 Protein involved in ribonuclease activity and hydrolase activity K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 612.0
YYD3_k127_1220612_20 - - - - 0.00000000000000000000000000000000000000003216 159.0
YYD3_k127_1220612_21 Rubredoxin - - - 0.0000000000000000000000000000000588 124.0
YYD3_k127_1220612_22 Uncharacterised protein family (UPF0227) K07000 GO:0003674,GO:0003824,GO:0016787,GO:0016788 - 0.0000000000000000000000000000001084 134.0
YYD3_k127_1220612_23 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000305 121.0
YYD3_k127_1220612_24 Protein of unknown function (DUF3426) - - - 0.0000000000000000000000000004411 125.0
YYD3_k127_1220612_25 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000002992 106.0
YYD3_k127_1220612_26 Belongs to the UPF0250 family K09158 - - 0.0000000000000008313 82.0
YYD3_k127_1220612_3 Aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 583.0
YYD3_k127_1220612_4 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 550.0
YYD3_k127_1220612_5 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 511.0
YYD3_k127_1220612_6 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 482.0
YYD3_k127_1220612_7 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 447.0
YYD3_k127_1220612_8 Aminotransferase class IV K00824 - 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 354.0
YYD3_k127_1220612_9 PFAM PfkB domain protein K00852,K00856 - 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 293.0
YYD3_k127_1237095_0 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 545.0
YYD3_k127_1237095_1 Protein of unknown function (DUF421) - - - 0.0000000000000000000000000000000000000000001092 164.0
YYD3_k127_1250114_0 Peptidase M48 Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 367.0
YYD3_k127_1250114_1 - - - - 0.0000000000000000000000000000000000000000000000000000002733 201.0
YYD3_k127_1250114_2 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.00000000000000000000000000000000000000009053 153.0
YYD3_k127_1250114_3 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000001723 149.0
YYD3_k127_1250114_4 - - - - 0.00000000000000000000000000000000000292 153.0
YYD3_k127_1257161_0 Phospholipase D Active site motif K01115 - 3.1.4.4 4.285e-247 783.0
YYD3_k127_1257161_1 endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008734 271.0
YYD3_k127_1257161_2 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000002827 234.0
YYD3_k127_1257161_3 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000005016 173.0
YYD3_k127_1257161_4 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000009258 81.0
YYD3_k127_1257161_5 - - - - 0.00004294 54.0
YYD3_k127_1257161_6 EF-hand domain pair - - - 0.00004968 51.0
YYD3_k127_128207_0 PFAM PHB de-polymerase domain protein K05973 - 3.1.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 539.0
YYD3_k127_128207_1 Bacterial regulatory helix-turn-helix protein, lysR family K13634 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 413.0
YYD3_k127_128207_2 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 0.0000000000000000000000000000000000000000000000000000000000000000003891 238.0
YYD3_k127_128207_3 PFAM peptidase S45 penicillin amidase K01434 - 3.5.1.11 0.000000000000000000001651 104.0
YYD3_k127_1303728_0 ABC-type dipeptide transport system periplasmic component K02035 - - 1.926e-219 691.0
YYD3_k127_1303728_1 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 430.0
YYD3_k127_1303728_2 Twin-arginine translocation pathway signal sequence - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 428.0
YYD3_k127_1303728_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 397.0
YYD3_k127_1303728_4 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007359 287.0
YYD3_k127_1303728_5 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000006987 239.0
YYD3_k127_1303728_6 Protein of unknown function (DUF1800) - - - 0.00000000000000006364 84.0
YYD3_k127_1303728_7 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.00003161 49.0
YYD3_k127_1313860_0 twitching motility protein K02670 - - 3.156e-207 651.0
YYD3_k127_1313860_1 twitching motility protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 547.0
YYD3_k127_1313860_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 354.0
YYD3_k127_1313860_3 lipid kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000004447 213.0
YYD3_k127_1313860_4 Protein of unknown function (DUF4239) - - - 0.0000000000000000000000000000000000000005134 159.0
YYD3_k127_1321809_0 Domain of unknown function (DUF4105) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 535.0
YYD3_k127_1321809_1 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 389.0
YYD3_k127_1321809_2 Prolyl oligopeptidase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006364 294.0
YYD3_k127_1321809_3 Prolyl oligopeptidase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002212 284.0
YYD3_k127_1321809_4 Protein of unknown function (DUF3015) - - - 0.00000000000000000000000000000000000000000000000001348 184.0
YYD3_k127_1321809_5 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.000000000000000000000000000000000003986 141.0
YYD3_k127_1321809_6 phosphocarrier, HPr family K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000002202 124.0
YYD3_k127_1321809_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000001338 125.0
YYD3_k127_1321809_8 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.000000000000000000001048 100.0
YYD3_k127_1357002_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 2.088e-220 698.0
YYD3_k127_1357002_1 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 591.0
YYD3_k127_1357002_10 prepilin-type N-terminal cleavage methylation K02456 - - 0.00000000000000000000000000000000000000004673 160.0
YYD3_k127_1357002_11 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000000000000000000000000000000000000008293 156.0
YYD3_k127_1357002_12 SCP-2 sterol transfer family - - - 0.000000000000000000000000000000002383 133.0
YYD3_k127_1357002_13 - - - - 0.00000000000000000000000000007049 125.0
YYD3_k127_1357002_14 subunit of a heme lyase K02200 - - 0.0000000000000000000001256 99.0
YYD3_k127_1357002_15 Pilus assembly protein, PilO - - - 0.000000000000000006889 91.0
YYD3_k127_1357002_16 pyridoxamine 5-phosphate K07005 - - 0.000000000000002268 81.0
YYD3_k127_1357002_17 - - - - 0.00000000004941 71.0
YYD3_k127_1357002_18 Binding-protein-dependent transport system inner membrane component K02029,K02424,K10009 - - 0.00000000005411 75.0
YYD3_k127_1357002_19 - - - - 0.000000003819 68.0
YYD3_k127_1357002_2 Secretin and TonB N terminus short domain K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 551.0
YYD3_k127_1357002_3 PFAM ABC transporter related K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 387.0
YYD3_k127_1357002_4 Type II secretion system (T2SS), protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 375.0
YYD3_k127_1357002_5 Cytochrome c-type biogenesis protein K02200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001712 276.0
YYD3_k127_1357002_6 COGs COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005833 248.0
YYD3_k127_1357002_7 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000001394 206.0
YYD3_k127_1357002_8 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000000000000000000001097 205.0
YYD3_k127_1357002_9 Type II secretory pathway pseudopilin - - - 0.000000000000000000000000000000000000000000000000151 181.0
YYD3_k127_1440922_0 regulation of DNA-templated transcription, elongation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006009 436.0
YYD3_k127_1440922_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 321.0
YYD3_k127_1440922_2 Surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 313.0
YYD3_k127_1440922_3 PFAM Surface antigen - - - 0.000000000000000000000000000000000000001817 153.0
YYD3_k127_1440922_4 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000009788 126.0
YYD3_k127_1440922_6 - - - - 0.0000000000162 69.0
YYD3_k127_1447851_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 2399.0
YYD3_k127_1447851_1 Pyridine nucleotide-disulphide oxidoreductase - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005783,GO:0006915,GO:0008150,GO:0008219,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0097194 - 2.769e-311 988.0
YYD3_k127_1447851_10 Methylenetetrahydrofolate reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 373.0
YYD3_k127_1447851_11 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 357.0
YYD3_k127_1447851_12 ABC transporter K15555,K15578 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 294.0
YYD3_k127_1447851_13 Tetrapyrrole (Corrin/Porphyrin) Methylases K02303 - 2.1.1.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000001026 263.0
YYD3_k127_1447851_14 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000007857 242.0
YYD3_k127_1447851_15 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000003934 240.0
YYD3_k127_1447851_16 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000001133 218.0
YYD3_k127_1447851_17 NnrU protein - - - 0.000000000000000000000000000000000000000000000000000003021 197.0
YYD3_k127_1447851_18 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000177 197.0
YYD3_k127_1447851_19 ANTAR K07183 - - 0.00000000000000000000000000000000000000000000000003154 185.0
YYD3_k127_1447851_2 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 1.821e-303 950.0
YYD3_k127_1447851_20 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000001785 133.0
YYD3_k127_1447851_21 - - - - 0.0000000000000000000000000000001168 138.0
YYD3_k127_1447851_22 - - - - 0.0000000000000000000000000003171 119.0
YYD3_k127_1447851_23 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000001281 66.0
YYD3_k127_1447851_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 9.729e-286 904.0
YYD3_k127_1447851_4 Nitrate ABC transporter K02051,K15576,K22067 - - 1.78e-203 639.0
YYD3_k127_1447851_5 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 499.0
YYD3_k127_1447851_6 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 481.0
YYD3_k127_1447851_7 Nitrate ABC transporter inner membrane subunit K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 397.0
YYD3_k127_1447851_8 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 389.0
YYD3_k127_1447851_9 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009226 370.0
YYD3_k127_1450184_0 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 1.213e-309 966.0
YYD3_k127_1450184_1 FtsX-like permease family K02004 - - 2.84e-242 778.0
YYD3_k127_1450184_2 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 517.0
YYD3_k127_1450184_3 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003832 441.0
YYD3_k127_1450184_4 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003605 282.0
YYD3_k127_1450184_5 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000002531 229.0
YYD3_k127_1450184_6 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 GO:0000287,GO:0003674,GO:0003824,GO:0004805,GO:0005488,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0033554,GO:0034637,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0046872,GO:0050896,GO:0051716,GO:0070413,GO:0070415,GO:0070417,GO:0071704,GO:1901576 3.1.3.12 0.000000000000000000000000000000000000000000000000000000001431 209.0
YYD3_k127_1450184_7 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.00000000000000000000000000002159 120.0
YYD3_k127_1450208_0 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0 1280.0
YYD3_k127_1450208_1 protein related to plant photosystem II stability assembly factor - - - 2.995e-203 645.0
YYD3_k127_1450208_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007405 355.0
YYD3_k127_1450208_3 UPF0126 domain - - - 0.000000000000000000000000000000000000000000000000000000007807 205.0
YYD3_k127_1450208_4 ThiS family K03636 - - 0.0000000000000000000000000354 117.0
YYD3_k127_1451860_0 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 464.0
YYD3_k127_1451860_1 Dehydrogenase K15054 - 1.1.99.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 396.0
YYD3_k127_1451860_2 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 371.0
YYD3_k127_1451860_3 Belongs to the DapA family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003825 360.0
YYD3_k127_1451860_4 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.0000000000000000000000000000000000000000000000000000001024 206.0
YYD3_k127_1452780_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 391.0
YYD3_k127_1452780_1 TRANSCRIPTIONal - - - 0.00000000000000000000000000000000000000000000000002265 186.0
YYD3_k127_1452780_2 - - - - 0.000000000000000000000000006894 117.0
YYD3_k127_1452780_3 Belongs to the UPF0337 (CsbD) family - - - 0.000000004038 66.0
YYD3_k127_1462590_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 405.0
YYD3_k127_1462590_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 403.0
YYD3_k127_1462590_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 306.0
YYD3_k127_1462590_3 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 311.0
YYD3_k127_1462590_4 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002954 279.0
YYD3_k127_1462590_5 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007283 273.0
YYD3_k127_1462590_6 Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000000000000000111 158.0
YYD3_k127_1462590_7 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000001021 101.0
YYD3_k127_1464856_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.0 1063.0
YYD3_k127_1464856_1 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.474e-195 620.0
YYD3_k127_1464856_2 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 600.0
YYD3_k127_1464856_3 KR domain K00038 - 1.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 378.0
YYD3_k127_1464856_4 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 297.0
YYD3_k127_1464856_5 Flavodoxin-like fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001343 258.0
YYD3_k127_1464856_6 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001279 250.0
YYD3_k127_1464856_7 cytochrome c K17223 - - 0.000000000000000000000000000000000000000000002094 169.0
YYD3_k127_1464856_8 sulfur oxidation protein (SoxY) K17226 - - 0.0000000000000000000000000000000000000000004127 168.0
YYD3_k127_1464856_9 Sulphur oxidation protein SoxZ - - - 0.0000000000000000000000000000000000000004241 154.0
YYD3_k127_1466318_0 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 4.866e-221 697.0
YYD3_k127_1466318_1 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004991 362.0
YYD3_k127_1466318_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000006158 232.0
YYD3_k127_1466318_3 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000003384 125.0
YYD3_k127_1466318_4 Major Facilitator Superfamily - - - 0.00000000000000000000000000004068 121.0
YYD3_k127_1466318_5 N-acetyltransferase K20838 GO:0001702,GO:0003674,GO:0003824,GO:0004468,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0006464,GO:0006473,GO:0006475,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0007162,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007507,GO:0008080,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0018003,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019222,GO:0019538,GO:0030155,GO:0031090,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0033116,GO:0034641,GO:0036211,GO:0042175,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0047198,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048598,GO:0048731,GO:0048856,GO:0050435,GO:0050789,GO:0050794,GO:0051186,GO:0060255,GO:0060548,GO:0065007,GO:0071704,GO:0072359,GO:0098588,GO:0098827,GO:1901564 2.3.1.80 0.000000001608 64.0
YYD3_k127_1466886_0 PFAM FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 574.0
YYD3_k127_1466886_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 327.0
YYD3_k127_1466886_2 Phospholipid-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000018 274.0
YYD3_k127_1466886_3 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000009869 211.0
YYD3_k127_1466886_4 membrane transporter protein K07090 - - 0.00000000000000000000000000000000001578 144.0
YYD3_k127_1466886_5 polyketide cyclase - - - 0.00000000000000000000000000001919 121.0
YYD3_k127_1466886_6 oxidation-reduction process - - - 0.00000000000000000000000000003118 121.0
YYD3_k127_1467010_0 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 463.0
YYD3_k127_1467010_1 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 454.0
YYD3_k127_1467010_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 338.0
YYD3_k127_1467010_3 Domain of unknown function (DUF1850) - - - 0.0006689 46.0
YYD3_k127_1467105_0 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 1.064e-196 619.0
YYD3_k127_1467105_1 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000001099 131.0
YYD3_k127_148528_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 6.026e-233 726.0
YYD3_k127_148528_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 544.0
YYD3_k127_148528_10 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003984 252.0
YYD3_k127_148528_11 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004782 243.0
YYD3_k127_148528_12 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000002198 228.0
YYD3_k127_148528_13 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000003493 224.0
YYD3_k127_148528_14 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000007157 233.0
YYD3_k127_148528_15 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000008271 203.0
YYD3_k127_148528_16 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000001774 185.0
YYD3_k127_148528_17 binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000000000005605 186.0
YYD3_k127_148528_18 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000001558 149.0
YYD3_k127_148528_19 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000007351 135.0
YYD3_k127_148528_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006415 539.0
YYD3_k127_148528_20 Ribosomal protein L30 K02907 - - 0.000000000000000002806 87.0
YYD3_k127_148528_21 Ribosomal protein L36 K02919 - - 0.0000000000001808 70.0
YYD3_k127_148528_3 Gentisate 1,2-dioxygenase K00450 - 1.13.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007745 446.0
YYD3_k127_148528_4 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 449.0
YYD3_k127_148528_5 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 361.0
YYD3_k127_148528_6 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 334.0
YYD3_k127_148528_7 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004927 304.0
YYD3_k127_148528_8 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003656 275.0
YYD3_k127_148528_9 esterase K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005517 284.0
YYD3_k127_1503279_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 1.223e-275 868.0
YYD3_k127_1503279_1 [2Fe-2S] binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000005267 222.0
YYD3_k127_1503279_2 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.000000000000000000000000000000000000000000000000000001161 193.0
YYD3_k127_1503279_3 Outer membrane protein beta-barrel domain - - - 0.0000000000001942 72.0
YYD3_k127_154967_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 587.0
YYD3_k127_154967_1 4Fe-4S single cluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006484 564.0
YYD3_k127_154967_10 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000004171 193.0
YYD3_k127_154967_11 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000295 192.0
YYD3_k127_154967_12 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000043 169.0
YYD3_k127_154967_13 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000001148 153.0
YYD3_k127_154967_14 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000006512 132.0
YYD3_k127_154967_15 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000008507 124.0
YYD3_k127_154967_16 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000006113 109.0
YYD3_k127_154967_2 type II secretion system protein K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 531.0
YYD3_k127_154967_3 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 456.0
YYD3_k127_154967_4 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 441.0
YYD3_k127_154967_5 Major facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009286 418.0
YYD3_k127_154967_6 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004305 349.0
YYD3_k127_154967_7 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009186 338.0
YYD3_k127_154967_8 CBS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 326.0
YYD3_k127_154967_9 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005193 266.0
YYD3_k127_1575505_0 Amidohydrolase family - - - 3.734e-223 704.0
YYD3_k127_1575505_1 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 349.0
YYD3_k127_1575505_2 Urease alpha-subunit, N-terminal domain K01428 - 3.5.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 299.0
YYD3_k127_1575505_3 of the double-stranded beta helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002018 265.0
YYD3_k127_1575505_4 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.0000000000000000000000000000000000000000000000000000000000000003223 227.0
YYD3_k127_1575505_5 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000000001536 158.0
YYD3_k127_1575505_6 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.0000000000000000000000000000006352 134.0
YYD3_k127_1575505_7 Aldolase/RraA - - - 0.00000005289 55.0
YYD3_k127_1582407_0 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 329.0
YYD3_k127_1582407_1 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001689 244.0
YYD3_k127_1582407_2 LysR substrate binding domain K18900 - - 0.0000000000000000000000000000000000000000000000000000001959 212.0
YYD3_k127_1582407_3 Protein of unknown function (DUF4242) - - - 0.00000000000000000000002276 100.0
YYD3_k127_1614320_0 Methionine synthase K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 427.0
YYD3_k127_1614320_1 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 367.0
YYD3_k127_1614320_10 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.000000000000000001114 89.0
YYD3_k127_1614320_2 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 358.0
YYD3_k127_1614320_3 Enoyl-CoA hydratase/isomerase K13766,K13779 - 4.2.1.18,4.2.1.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 347.0
YYD3_k127_1614320_4 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 293.0
YYD3_k127_1614320_5 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001866 274.0
YYD3_k127_1614320_6 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007983 282.0
YYD3_k127_1614320_7 PFAM Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000007052 231.0
YYD3_k127_1614320_8 Nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000007372 212.0
YYD3_k127_1614320_9 cold-shock protein K03704 - - 0.00000000000000000000000000001014 119.0
YYD3_k127_1655182_0 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 411.0
YYD3_k127_1655182_1 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006109 322.0
YYD3_k127_1655182_2 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002035 252.0
YYD3_k127_1655182_3 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000004581 231.0
YYD3_k127_1655182_4 Sugar isomerase (SIS) - - - 0.0000000000000000000000000000000000000000000000000000000000000001388 232.0
YYD3_k127_1655182_5 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01995 - - 0.0000000000000000000000000000000000000000000000000000004477 203.0
YYD3_k127_1655182_6 methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000002296 144.0
YYD3_k127_1655182_7 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000002618 116.0
YYD3_k127_1697406_0 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 1.788e-223 698.0
YYD3_k127_1697406_1 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 603.0
YYD3_k127_1697406_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 578.0
YYD3_k127_1697406_3 2OG-Fe(II) oxygenase superfamily - - - 0.0000000000000000000000000000000000000008351 155.0
YYD3_k127_1697406_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000002826 122.0
YYD3_k127_1700835_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1011.0
YYD3_k127_1700835_1 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 470.0
YYD3_k127_1700835_2 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 455.0
YYD3_k127_1700835_3 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 296.0
YYD3_k127_1700897_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1373.0
YYD3_k127_1700897_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 4.268e-313 976.0
YYD3_k127_1700897_10 fimbrial biogenesis protein PilN K02663 - - 0.0000000000000000000000000000000000000000000000000000002551 199.0
YYD3_k127_1700897_11 pilus assembly protein PilP K02665 - - 0.000000000000000000000000000000000000000000103 166.0
YYD3_k127_1700897_12 Inorganic ion transport and metabolism K06202 - - 0.0000000000000000000000000000009096 123.0
YYD3_k127_1700897_13 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.0000000000000000004273 87.0
YYD3_k127_1700897_14 - - - - 0.0000000000000000243 91.0
YYD3_k127_1700897_15 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 0.000000001514 69.0
YYD3_k127_1700897_2 Pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 469.0
YYD3_k127_1700897_3 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 468.0
YYD3_k127_1700897_4 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 387.0
YYD3_k127_1700897_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000734 273.0
YYD3_k127_1700897_6 Type 4 fimbrial biogenesis protein K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000348 271.0
YYD3_k127_1700897_7 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007068 245.0
YYD3_k127_1700897_8 Pilus assembly protein PilO K02664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000111 251.0
YYD3_k127_1700897_9 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.0000000000000000000000000000000000000000000000000000000000000001944 227.0
YYD3_k127_1731767_0 Cysteine synthase K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 488.0
YYD3_k127_1731767_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 296.0
YYD3_k127_1731767_2 enoyl-CoA hydratase - - - 0.0000000000000000000000000000000000000000000000000005036 188.0
YYD3_k127_1731767_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000003408 152.0
YYD3_k127_1731767_4 Evidence 4 Homologs of previously reported genes of K09700 - - 0.00000000000000000000000000111 118.0
YYD3_k127_1737715_0 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 1.875e-232 733.0
YYD3_k127_1737715_1 Extracellular liganD-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 553.0
YYD3_k127_1737715_2 Dimerisation domain of Zinc Transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 378.0
YYD3_k127_1737715_3 Acetyl-CoA hydrolase/transferase N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005426 350.0
YYD3_k127_1737715_4 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 302.0
YYD3_k127_1737715_5 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005443 284.0
YYD3_k127_1737715_6 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001147 269.0
YYD3_k127_1737715_8 Permeases of the major facilitator superfamily - - - 0.000005492 49.0
YYD3_k127_1742056_0 Bacterial extracellular solute-binding protein K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 584.0
YYD3_k127_1742056_1 Belongs to the ParA family K03609 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 475.0
YYD3_k127_1742056_2 COG3839 ABC-type sugar transport systems, ATPase components K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 389.0
YYD3_k127_1742056_3 Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization K03610 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 289.0
YYD3_k127_1742056_4 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.000000000000000000000000000001984 121.0
YYD3_k127_1742056_5 PFAM binding-protein-dependent transport systems inner membrane component K02025,K05814,K17316 - - 0.000000000000001303 82.0
YYD3_k127_1742414_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 499.0
YYD3_k127_1742414_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007752 256.0
YYD3_k127_1742414_2 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000001349 227.0
YYD3_k127_1742414_3 Hydrolase, P-loop family K06925 - - 0.000000000000000000000000000000000000000006871 158.0
YYD3_k127_1742414_4 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000008382 102.0
YYD3_k127_1746029_0 3-hydroxyanthranilic acid dioxygenase K00452 GO:0000334,GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0044237,GO:0044248,GO:0051213,GO:0055114 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000001939 230.0
YYD3_k127_1746029_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000002709 207.0
YYD3_k127_1763480_0 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 453.0
YYD3_k127_1763480_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005213 362.0
YYD3_k127_1763480_2 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004965 273.0
YYD3_k127_1763480_3 Bacterial regulatory helix-turn-helix protein, lysR family K18900 - - 0.000000000000000000000000000000000000000000000000000000000000000000002383 245.0
YYD3_k127_1763480_4 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000007847 220.0
YYD3_k127_1763480_5 PFAM MmgE PrpD family protein - - - 0.0000000000000003995 83.0
YYD3_k127_1773313_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0 1075.0
YYD3_k127_1773313_1 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 1.454e-240 762.0
YYD3_k127_1773313_10 PFAM Lytic transglycosylase catalytic - - - 0.000000000000000000000000000000002562 141.0
YYD3_k127_1773313_11 Thiol-disulfide isomerase K00384 - 1.8.1.9 0.000000000000000000000000005796 112.0
YYD3_k127_1773313_12 Domain of unknown function (DUF4864) - - - 0.00004023 50.0
YYD3_k127_1773313_2 Starch synthase catalytic domain K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 452.0
YYD3_k127_1773313_3 PFAM Na dependent nucleoside transporter K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 441.0
YYD3_k127_1773313_4 PFAM Serine threonine protein kinase-related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 395.0
YYD3_k127_1773313_5 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000976 343.0
YYD3_k127_1773313_6 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 323.0
YYD3_k127_1773313_7 UPF0761 membrane protein K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005176 273.0
YYD3_k127_1773313_8 NADPH-dependent FMN reductase K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000003832 224.0
YYD3_k127_1773313_9 PFAM ATPase associated with various cellular activities AAA_3 K03924 - - 0.0000000000000000000000000000000000000002485 153.0
YYD3_k127_179305_0 Histidine kinase - - - 1.707e-303 951.0
YYD3_k127_179305_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 612.0
YYD3_k127_179305_2 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 519.0
YYD3_k127_179305_3 Histidine kinase K20974 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008444 461.0
YYD3_k127_179305_4 - - - - 0.0000000000000000006336 86.0
YYD3_k127_179305_5 Protein of unknown function (DUF3617) - - - 0.0000007738 57.0
YYD3_k127_1802847_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 371.0
YYD3_k127_1802847_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 350.0
YYD3_k127_1802847_2 serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 348.0
YYD3_k127_1802847_3 Stress-induced protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 296.0
YYD3_k127_1802847_4 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000001227 228.0
YYD3_k127_1802847_5 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000003464 205.0
YYD3_k127_1802847_6 Protein phosphatase 2C K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000009936 175.0
YYD3_k127_1802847_7 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000000000001392 102.0
YYD3_k127_1802847_8 Involved in the biosynthesis of porphyrin-containing compound - GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000003397 75.0
YYD3_k127_183638_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 5.423e-239 754.0
YYD3_k127_183638_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 610.0
YYD3_k127_183638_10 protein conserved in bacteria K09937 - - 0.000000000000000002371 86.0
YYD3_k127_183638_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 561.0
YYD3_k127_183638_3 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 490.0
YYD3_k127_183638_4 Amidohydrolase K01686 - 4.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 469.0
YYD3_k127_183638_5 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007311 421.0
YYD3_k127_183638_6 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 391.0
YYD3_k127_183638_7 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 383.0
YYD3_k127_183638_8 CBS domain - - - 0.00000000000000000000000000000000000000000000007124 172.0
YYD3_k127_183638_9 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000000174 142.0
YYD3_k127_18914_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 536.0
YYD3_k127_18914_1 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 464.0
YYD3_k127_18914_2 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 299.0
YYD3_k127_1902292_0 AMP-binding enzyme K01895 - 6.2.1.1 1.954e-242 759.0
YYD3_k127_1902292_1 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 565.0
YYD3_k127_1902292_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 436.0
YYD3_k127_1902292_3 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 358.0
YYD3_k127_1902292_4 Leucyl/phenylalanyl-tRNA protein transferase K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 289.0
YYD3_k127_1902292_5 Nudix N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009849 271.0
YYD3_k127_1902292_6 plastoquinol--plastocyanin reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002191 256.0
YYD3_k127_1902292_7 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000007238 240.0
YYD3_k127_1902292_8 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000003549 236.0
YYD3_k127_1902292_9 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.0000000000000000000000000000000000000000000000001677 187.0
YYD3_k127_1921581_0 ribosomal rna small subunit methyltransferase - - - 2.347e-198 632.0
YYD3_k127_1921581_1 cysteine synthase K01697 - 4.2.1.22 1.607e-195 620.0
YYD3_k127_1921581_2 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01758 - 4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 557.0
YYD3_k127_1921581_3 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 319.0
YYD3_k127_1921581_4 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 306.0
YYD3_k127_1921581_5 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000000003477 201.0
YYD3_k127_1921581_6 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000009842 143.0
YYD3_k127_1949606_0 GXGXG motif K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2306.0
YYD3_k127_1949606_1 glutamate synthase K00266 - 1.4.1.13,1.4.1.14 7.294e-245 765.0
YYD3_k127_1949606_2 type II and III secretion system protein K02666 - - 1.307e-238 754.0
YYD3_k127_1949606_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 558.0
YYD3_k127_1949606_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005581 428.0
YYD3_k127_1949606_5 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 408.0
YYD3_k127_1949606_6 MgtC family K07507 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001756 274.0
YYD3_k127_1949606_7 Protein of unknown function (DUF2891) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003907 265.0
YYD3_k127_1949606_8 Shikimate kinase K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000000000001266 238.0
YYD3_k127_2008411_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.916e-235 734.0
YYD3_k127_2008411_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 353.0
YYD3_k127_2008411_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000007399 229.0
YYD3_k127_2008411_3 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000000000000000001303 227.0
YYD3_k127_2008411_4 Oligoketide cyclase lipid transport protein - - - 0.0000000000000000000000000000000000000005751 153.0
YYD3_k127_2008411_5 Belongs to the UPF0125 (RnfH) family K09801 - - 0.000000000002652 73.0
YYD3_k127_2008411_6 Domain of unknown function (DUF4124) - - - 0.000000001443 70.0
YYD3_k127_2014650_0 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 417.0
YYD3_k127_2014650_1 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 438.0
YYD3_k127_2014650_2 acid transport K09972 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 387.0
YYD3_k127_2014650_3 acid transport system permease K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 359.0
YYD3_k127_2014650_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 299.0
YYD3_k127_2014650_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003884 278.0
YYD3_k127_2014650_6 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000653 224.0
YYD3_k127_2014650_7 thiosulfate sulfurtransferase activity - - - 0.000000000000000000000000000000000000000000000000000000005946 209.0
YYD3_k127_2014667_0 ABC transporter K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 490.0
YYD3_k127_2014667_1 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 366.0
YYD3_k127_2014667_2 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003977 334.0
YYD3_k127_2014667_3 NMT1-like family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 313.0
YYD3_k127_2014667_4 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009979 243.0
YYD3_k127_2014667_5 Twin-arginine translocation pathway signal protein - - - 0.000000000000000000000000000000000000000000000000000000000001819 218.0
YYD3_k127_2014667_6 Extra-cytoplasmic solute receptor family protein 121 - - - 0.00000000000000000000000000000000000000004094 164.0
YYD3_k127_2018739_0 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009246 577.0
YYD3_k127_2018739_1 Integrase catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 363.0
YYD3_k127_2018739_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000004869 214.0
YYD3_k127_2018739_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000003376 170.0
YYD3_k127_2018739_4 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000002297 167.0
YYD3_k127_2018739_5 Carbohydrate esterase, sialic acid-specific acetylesterase - - - 0.000000000000000000000000000000000000000002947 170.0
YYD3_k127_2018739_6 Domain of unknown function (DUF4124) - - - 0.000000000000000000000000000001761 127.0
YYD3_k127_2018739_7 PFAM Sporulation domain protein - - - 0.000000000000000000000000000002324 130.0
YYD3_k127_2018739_8 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000004116 97.0
YYD3_k127_2021560_0 AcyL-CoA dehydrogenase K06445 - - 7.044e-320 998.0
YYD3_k127_2021560_1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components K06147 - - 4.789e-240 758.0
YYD3_k127_2021560_10 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009082 284.0
YYD3_k127_2021560_11 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001489 267.0
YYD3_k127_2021560_12 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000005937 223.0
YYD3_k127_2021560_13 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000002101 228.0
YYD3_k127_2021560_14 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.000000000000000000000000000000000000000000000000000001254 202.0
YYD3_k127_2021560_15 Thioesterase superfamily K10806 - - 0.000000000000000000000000000000000000000000000000007785 183.0
YYD3_k127_2021560_16 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000405 182.0
YYD3_k127_2021560_17 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000005767 173.0
YYD3_k127_2021560_18 MarC family integral membrane protein K05595 - - 0.0000000000000000000000000000000000000000003674 173.0
YYD3_k127_2021560_19 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000001919 146.0
YYD3_k127_2021560_2 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 5.51e-236 747.0
YYD3_k127_2021560_3 Belongs to the thiolase family K00626 - 2.3.1.9 5.502e-204 642.0
YYD3_k127_2021560_4 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 594.0
YYD3_k127_2021560_5 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 586.0
YYD3_k127_2021560_6 Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009613 542.0
YYD3_k127_2021560_7 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 377.0
YYD3_k127_2021560_8 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 331.0
YYD3_k127_2021560_9 Histidine-specific methyltransferase, SAM-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000689 324.0
YYD3_k127_2025137_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 6.438e-304 946.0
YYD3_k127_2025137_1 YMGG-like Gly-zipper - - - 0.0000000000000000000000000000000000000000000000000000001269 201.0
YYD3_k127_2025137_2 membrane - - - 0.0000000000000000000000000000000000000000000002787 175.0
YYD3_k127_2025137_3 Outer membrane protein beta-barrel domain K16079 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000004913 159.0
YYD3_k127_2035690_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 8.026e-201 635.0
YYD3_k127_2035690_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 505.0
YYD3_k127_2035690_10 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00001629 48.0
YYD3_k127_2035690_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 489.0
YYD3_k127_2035690_3 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 462.0
YYD3_k127_2035690_4 LytTr DNA-binding domain K08083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000843 273.0
YYD3_k127_2035690_5 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000000000000255 261.0
YYD3_k127_2035690_6 Fructosamine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009271 267.0
YYD3_k127_2035690_7 alginate biosynthesis protein AlgZ FimS K08082 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000002018 262.0
YYD3_k127_2035690_8 PFAM Cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000001026 181.0
YYD3_k127_2035690_9 Glutaredoxin K07390 - - 0.0000000000000000000000000000000000000000000001676 169.0
YYD3_k127_2036495_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 6.357e-262 814.0
YYD3_k127_2036495_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 587.0
YYD3_k127_2036495_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007622 573.0
YYD3_k127_2036495_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 481.0
YYD3_k127_2036495_4 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002672 448.0
YYD3_k127_2036495_5 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 398.0
YYD3_k127_2036495_6 Could be involved in insertion of integral membrane proteins into the membrane K08998 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031226,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.000000000000000000006586 102.0
YYD3_k127_2036495_7 Ribosomal protein L34 - - - 0.00000000002643 64.0
YYD3_k127_2036495_8 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000007814 57.0
YYD3_k127_2036854_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.411e-201 636.0
YYD3_k127_2036854_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 602.0
YYD3_k127_2036854_10 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000003535 190.0
YYD3_k127_2036854_11 Protein of unknown function (DUF3299) K09950 - - 0.000000000000000000000000000000000000000002323 161.0
YYD3_k127_2036854_12 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000001864 164.0
YYD3_k127_2036854_13 - - - - 0.00000000000000000005627 91.0
YYD3_k127_2036854_2 Cobalamin synthesis protein cobW C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 458.0
YYD3_k127_2036854_3 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 449.0
YYD3_k127_2036854_4 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004918 387.0
YYD3_k127_2036854_5 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 325.0
YYD3_k127_2036854_6 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 315.0
YYD3_k127_2036854_7 Pyrimidine 5''-nucleotidase K07025 - - 0.00000000000000000000000000000000000000000000000000000000000000000002858 248.0
YYD3_k127_2036854_8 Bacterial regulatory proteins, tetR family K05501 - - 0.000000000000000000000000000000000000000000000000000000000000007847 220.0
YYD3_k127_2036854_9 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000004496 211.0
YYD3_k127_2042304_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.554e-208 655.0
YYD3_k127_2042304_1 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 590.0
YYD3_k127_2042304_10 - - - - 0.0000000000000000000000000000000000000000002306 164.0
YYD3_k127_2042304_11 - - - - 0.000000000000000000000004509 106.0
YYD3_k127_2042304_12 Protein of unknown function (DUF1161) - - - 0.0000000000000003571 81.0
YYD3_k127_2042304_13 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0002458 47.0
YYD3_k127_2042304_2 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 530.0
YYD3_k127_2042304_3 DNA repair photolyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004798 406.0
YYD3_k127_2042304_4 PFAM multi antimicrobial extrusion protein MatE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 359.0
YYD3_k127_2042304_5 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 331.0
YYD3_k127_2042304_6 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 305.0
YYD3_k127_2042304_7 PFAM alpha beta hydrolase fold K01055 - 3.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000005087 263.0
YYD3_k127_2042304_8 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001911 247.0
YYD3_k127_2042304_9 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000003869 226.0
YYD3_k127_2045649_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 9.721e-264 831.0
YYD3_k127_2045649_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 557.0
YYD3_k127_2045649_2 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003757 258.0
YYD3_k127_2045649_3 Yqey-like protein K09117 - - 0.000000000000000000000000000000000000000000000003629 175.0
YYD3_k127_2045649_4 Gram-negative-bacterium-type cell outer membrane assembly K21572 - - 0.000005387 54.0
YYD3_k127_2059645_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 1.205e-264 818.0
YYD3_k127_2059645_1 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 2.862e-221 693.0
YYD3_k127_2059645_10 membrane-bound metal-dependent K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947 316.0
YYD3_k127_2059645_11 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 311.0
YYD3_k127_2059645_12 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001463 284.0
YYD3_k127_2059645_13 COG0685 5,10-methylenetetrahydrofolate reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001008 278.0
YYD3_k127_2059645_14 PFAM oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003249 273.0
YYD3_k127_2059645_15 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000009564 279.0
YYD3_k127_2059645_16 Lipid A Biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.00000000000000000000000000000000000000000000000000000000000000000000000000003667 268.0
YYD3_k127_2059645_17 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000000008353 231.0
YYD3_k127_2059645_18 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.000000000000000000000000000006725 127.0
YYD3_k127_2059645_19 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000004521 61.0
YYD3_k127_2059645_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 605.0
YYD3_k127_2059645_3 Cobalamin biosynthesis protein CobW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007126 508.0
YYD3_k127_2059645_4 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002634 459.0
YYD3_k127_2059645_5 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 385.0
YYD3_k127_2059645_6 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 389.0
YYD3_k127_2059645_7 PFAM Extradiol ring-cleavage dioxygenase, class III K04101 - 1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 355.0
YYD3_k127_2059645_8 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 355.0
YYD3_k127_2059645_9 Lipid A Biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 328.0
YYD3_k127_2067488_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1349.0
YYD3_k127_2067488_1 2-methylcitrate dehydratase K01720 - 4.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438 517.0
YYD3_k127_2067488_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 304.0
YYD3_k127_2067488_3 Protein required for attachment to host cells - - - 0.000000000001965 71.0
YYD3_k127_2067488_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00005664 47.0
YYD3_k127_2089548_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.13e-244 758.0
YYD3_k127_2089548_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 413.0
YYD3_k127_2089548_2 lytic transglycosylase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004627 291.0
YYD3_k127_2089548_3 FtsJ-like methyltransferase K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000002185 220.0
YYD3_k127_2092622_0 FAD dependent oxidoreductase central domain - - - 5.51e-231 730.0
YYD3_k127_2092622_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 492.0
YYD3_k127_2092622_2 TIGRFAM 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009464 481.0
YYD3_k127_2092622_3 binding-protein-dependent transport systems inner membrane component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 467.0
YYD3_k127_2092622_4 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 346.0
YYD3_k127_2097721_0 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004997 362.0
YYD3_k127_2097721_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 302.0
YYD3_k127_2097721_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000003377 122.0
YYD3_k127_2106382_0 Acyl-CoA dehydrogenase N terminal K20035 - - 2.229e-227 717.0
YYD3_k127_2106382_1 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 451.0
YYD3_k127_2106382_2 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000714 329.0
YYD3_k127_2106382_3 Mechanosensitive ion channel - - - 0.0000000000000000000000007214 108.0
YYD3_k127_2111737_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 607.0
YYD3_k127_2111737_1 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 564.0
YYD3_k127_2111737_10 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000113 187.0
YYD3_k127_2111737_11 Protein of unknown function DUF45 K07043 - - 0.0000000000000000000000000000000000000002029 167.0
YYD3_k127_2111737_12 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000005788 69.0
YYD3_k127_2111737_13 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 GO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050896,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.00001147 49.0
YYD3_k127_2111737_2 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 454.0
YYD3_k127_2111737_3 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 437.0
YYD3_k127_2111737_4 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 373.0
YYD3_k127_2111737_5 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001507 281.0
YYD3_k127_2111737_6 Nucleotidyl transferase K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000001704 247.0
YYD3_k127_2111737_7 Polynucleotide kinase 3 phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000000000001259 239.0
YYD3_k127_2111737_8 FAD binding domain K03185 - - 0.000000000000000000000000000000000000000000000000000000000000000004871 238.0
YYD3_k127_2111737_9 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000005807 234.0
YYD3_k127_2123711_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 515.0
YYD3_k127_2123711_1 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 516.0
YYD3_k127_2123711_2 Lysine exporter protein (Lyse ygga) K11250 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001057 278.0
YYD3_k127_2123711_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000001134 199.0
YYD3_k127_2123711_4 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.00000000000000000000000000000000000000000007855 161.0
YYD3_k127_2140239_0 Malic enzyme K00029 - 1.1.1.40 0.0 1046.0
YYD3_k127_2140239_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006481 499.0
YYD3_k127_2140239_10 - K11275 - - 0.00003375 50.0
YYD3_k127_2140239_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 416.0
YYD3_k127_2140239_3 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002838 417.0
YYD3_k127_2140239_4 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 346.0
YYD3_k127_2140239_5 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000000394 146.0
YYD3_k127_2140239_6 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000003456 99.0
YYD3_k127_2140239_7 - - - - 0.000000000000000002443 87.0
YYD3_k127_2140239_8 Protein of unknown function (DUF2442) - - - 0.0000000003068 64.0
YYD3_k127_2140239_9 Membrane - GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016020,GO:0033554,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - 0.00001351 55.0
YYD3_k127_2168485_0 Methyltransferase, type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005996 355.0
YYD3_k127_2168485_1 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001008 272.0
YYD3_k127_2168485_2 Putative methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000002918 244.0
YYD3_k127_2168485_3 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000000000000000000000000007745 205.0
YYD3_k127_2168485_4 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000009262 210.0
YYD3_k127_2168485_5 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000006457 196.0
YYD3_k127_2168485_6 Cupin domain - - - 0.0000000000000000000000000000000000000000002237 173.0
YYD3_k127_2168485_7 Cupin 2, conserved barrel domain protein - - - 0.000000000000718 69.0
YYD3_k127_2174181_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1012.0
YYD3_k127_2174181_1 COG1538 Outer membrane protein K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 407.0
YYD3_k127_2174181_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 334.0
YYD3_k127_2174181_3 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000648 277.0
YYD3_k127_2174181_4 alpha beta - - - 0.00000000000000000000000000000000000000000000000000002202 197.0
YYD3_k127_2174181_5 Rhodanese Homology Domain - - - 0.00000000000000000000000000000002595 127.0
YYD3_k127_2174181_6 Rhodanese Homology Domain - - - 0.0000000000000000001446 92.0
YYD3_k127_2181459_0 Aldehyde oxidase and xanthine dehydrogenase K03520 - 1.2.5.3 3.251e-258 817.0
YYD3_k127_2181459_1 Cupin domain K00450 - 1.13.11.4 0.0000000000003462 72.0
YYD3_k127_2181459_2 aminopeptidase activity K18028 - 1.13.11.9 0.0000009194 55.0
YYD3_k127_2187910_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 3.17e-233 730.0
YYD3_k127_2187910_1 FAD binding domain K00481 - 1.14.13.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 563.0
YYD3_k127_2187910_10 PFAM O-methyltransferase, family 3 - - - 0.000000000000000000257 93.0
YYD3_k127_2187910_11 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000002049 64.0
YYD3_k127_2187910_2 COG1680 Beta-lactamase class C and other penicillin binding proteins K01286,K08641 - 3.4.13.22,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007322 520.0
YYD3_k127_2187910_3 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 306.0
YYD3_k127_2187910_4 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002109 289.0
YYD3_k127_2187910_5 Cysteine-rich secretory protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000003788 255.0
YYD3_k127_2187910_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000943 181.0
YYD3_k127_2187910_7 FR47-like protein - - - 0.000000000000000000000000000000000000000005144 163.0
YYD3_k127_2187910_8 membrane - - - 0.00000000000000000000000000001731 122.0
YYD3_k127_2187910_9 Protein of unknown function (DUF1232) - - - 0.00000000000000000000000008473 115.0
YYD3_k127_2235391_0 Belongs to the TPP enzyme family K01577 - 4.1.1.8 1.76e-310 959.0
YYD3_k127_2235391_1 CoA-transferase family III K07749,K14471,K14472 - 2.8.3.16,2.8.3.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005597 587.0
YYD3_k127_2235391_2 PFAM formyl transferase domain protein K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 450.0
YYD3_k127_2235391_3 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007879 350.0
YYD3_k127_2235391_4 (FHA) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 317.0
YYD3_k127_2235391_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009301 261.0
YYD3_k127_2235391_6 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000005716 227.0
YYD3_k127_2235391_7 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000008536 63.0
YYD3_k127_2303083_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 4.735e-262 817.0
YYD3_k127_2303083_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 417.0
YYD3_k127_2303083_2 Peptidase family M23 K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 313.0
YYD3_k127_2303083_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003609 283.0
YYD3_k127_2303083_4 PAS fold - - - 0.000000000000002607 86.0
YYD3_k127_2303083_5 Protein of unknown function (DUF721) - - - 0.0002242 50.0
YYD3_k127_2303579_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 1.748e-245 778.0
YYD3_k127_2303579_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 304.0
YYD3_k127_2303579_2 Bacterial regulatory helix-turn-helix protein, lysR family K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003433 281.0
YYD3_k127_2303579_3 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000006899 182.0
YYD3_k127_2303579_4 NUDIX domain - - - 0.00000000000000000000000000000000000000000000005944 172.0
YYD3_k127_2303579_5 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000008571 137.0
YYD3_k127_2306606_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 359.0
YYD3_k127_2306606_1 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007872 345.0
YYD3_k127_2306606_2 PUA-like domain K00958 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000001336 219.0
YYD3_k127_2306606_3 - - - - 0.000000000000000001663 99.0
YYD3_k127_230966_0 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 397.0
YYD3_k127_230966_1 PFAM pyridoxamine 5-phosphate K07006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001122 245.0
YYD3_k127_230966_2 Cupin 2, conserved barrel - - - 0.000000000000000000000000000000000000000000000000000000000474 203.0
YYD3_k127_230966_3 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000000000004852 194.0
YYD3_k127_230966_4 response regulator - - - 0.0000000000000000000000000000000000000002328 160.0
YYD3_k127_230966_5 Dehydratase family K22186 - 4.2.1.82 0.0000000000000000000000000000004073 123.0
YYD3_k127_230966_6 - - - - 0.0000000006516 68.0
YYD3_k127_230966_7 - - - - 0.0000000008907 63.0
YYD3_k127_230966_8 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0001653 53.0
YYD3_k127_2319825_0 PFAM sigma-54 factor interaction domain-containing protein K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 510.0
YYD3_k127_2319825_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008418 443.0
YYD3_k127_2319825_2 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009107 390.0
YYD3_k127_2319825_3 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 382.0
YYD3_k127_2319825_4 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 327.0
YYD3_k127_2319825_5 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002928 297.0
YYD3_k127_2319825_6 PFAM N-acetylmuramoyl-L-alanine amidase family 2 K03806 - 3.5.1.28 0.000000000000000000000000000000000000000000000001564 186.0
YYD3_k127_2319825_7 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000002353 146.0
YYD3_k127_2319825_8 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000006569 131.0
YYD3_k127_2319825_9 - K06950 - - 0.0000001844 59.0
YYD3_k127_2320388_0 belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 7.506e-225 707.0
YYD3_k127_2320388_1 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000605 412.0
YYD3_k127_2320388_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 413.0
YYD3_k127_2320388_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008986 368.0
YYD3_k127_2320388_4 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 366.0
YYD3_k127_2320388_5 Belongs to the GcvT family K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 375.0
YYD3_k127_2320388_6 synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000002066 264.0
YYD3_k127_2320388_7 - - - - 0.0000000000000000000000000000000000000004298 159.0
YYD3_k127_2320388_8 PFAM cyclase family protein - - - 0.0000000000000000000000009373 104.0
YYD3_k127_2320388_9 Major facilitator Superfamily - - - 0.0000000000000000002293 91.0
YYD3_k127_2324321_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.686e-315 980.0
YYD3_k127_2324321_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.512e-246 779.0
YYD3_k127_2324321_2 Exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 515.0
YYD3_k127_2324321_3 Belongs to the MtfA family K09933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002204 266.0
YYD3_k127_2324321_4 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000000000000000001034 141.0
YYD3_k127_2324321_5 Xylose isomerase - - - 0.0000000000000000000000000000002934 127.0
YYD3_k127_2324321_6 DoxX K15977 - - 0.0000000000000000000000000000012 125.0
YYD3_k127_2341211_0 elongation factor G K02355 - - 4.705e-293 913.0
YYD3_k127_2341211_1 Domain of unknown function DUF21 K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 539.0
YYD3_k127_2341211_2 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 415.0
YYD3_k127_2341211_3 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007542 368.0
YYD3_k127_2341211_4 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 290.0
YYD3_k127_2341211_5 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000186 208.0
YYD3_k127_2341211_6 Domain of unknown function (DUF4340) - - - 0.0000000000000000000006244 109.0
YYD3_k127_2341211_7 Protein of unknown function (DUF2721) - - - 0.00000000000000000001256 96.0
YYD3_k127_2341211_8 ATPases associated with a variety of cellular activities - - - 0.000000000006256 69.0
YYD3_k127_2348491_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 474.0
YYD3_k127_2348491_1 PFAM AsmA family protein K07289,K07290 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004189 443.0
YYD3_k127_2348491_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000001649 229.0
YYD3_k127_2348491_3 - K11477 - - 0.00000000000000000000000000000000000000000000000000005283 190.0
YYD3_k127_2352487_0 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 2.899e-266 829.0
YYD3_k127_2352487_1 Flavin-binding monooxygenase-like - - - 5.363e-243 775.0
YYD3_k127_2352487_10 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000002586 150.0
YYD3_k127_2352487_11 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000001056 53.0
YYD3_k127_2352487_2 Fumarate reductase flavoprotein C-term - - - 1.067e-203 653.0
YYD3_k127_2352487_3 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 541.0
YYD3_k127_2352487_4 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006826 424.0
YYD3_k127_2352487_5 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003515 372.0
YYD3_k127_2352487_6 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 320.0
YYD3_k127_2352487_7 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 321.0
YYD3_k127_2352487_8 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001496 276.0
YYD3_k127_2352487_9 abc transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001778 252.0
YYD3_k127_2372206_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 2.5e-323 998.0
YYD3_k127_2372206_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 359.0
YYD3_k127_2372206_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 348.0
YYD3_k127_2372206_3 4,5-dihydroxyphthalate decarboxylase K04102 - 4.1.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 352.0
YYD3_k127_2372206_4 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009045 250.0
YYD3_k127_2372206_5 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000001895 192.0
YYD3_k127_2372206_6 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000005972 88.0
YYD3_k127_2373512_0 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 2.47e-248 777.0
YYD3_k127_2373512_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 421.0
YYD3_k127_2373512_10 NHase catalyzes the hydration of various nitrile compounds to the corresponding amides K20807 - 4.2.1.84 0.00008725 54.0
YYD3_k127_2373512_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit K01721,K20807 - 4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000000000001185 263.0
YYD3_k127_2373512_3 Allophanate hydrolase subunit 2 K06350 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008291 263.0
YYD3_k127_2373512_4 ORF6N domain - - - 0.0000000000000000000000000000000000000000000000000000352 191.0
YYD3_k127_2373512_5 Allophanate hydrolase subunit 1 - - - 0.000000000000000000000000000000000000000000000004866 182.0
YYD3_k127_2373512_6 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000003934 182.0
YYD3_k127_2373512_7 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000000000000000001655 136.0
YYD3_k127_2373512_8 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000003278 112.0
YYD3_k127_2373512_9 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000001261 72.0
YYD3_k127_2373964_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 5.333e-194 617.0
YYD3_k127_2373964_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007258 577.0
YYD3_k127_2373964_10 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000001031 212.0
YYD3_k127_2373964_11 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000005604 210.0
YYD3_k127_2373964_12 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000454 204.0
YYD3_k127_2373964_13 antiporter K05562 - - 0.00000000000000000000000000000000000000000000000000007749 195.0
YYD3_k127_2373964_14 PFAM CBS domain containing protein - - - 0.0000000000000000000000000000000000000000000000004653 188.0
YYD3_k127_2373964_15 DoxX family K15977 - - 0.000000000000000000000000000000000000000001022 161.0
YYD3_k127_2373964_16 Cytochrome c K08738 - - 0.0000000000000000000000000000000000001364 149.0
YYD3_k127_2373964_17 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000005046 128.0
YYD3_k127_2373964_18 PFAM Na H antiporter subunit K05564 - - 0.000000000000000000000000000002147 132.0
YYD3_k127_2373964_19 COG2212 Multisubunit Na H antiporter, MnhF subunit K05563 - - 0.000000000000000000000000001015 122.0
YYD3_k127_2373964_2 PFAM Patatin K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 437.0
YYD3_k127_2373964_20 Ppx GppA phosphatase - - - 0.000000000000000000000002956 106.0
YYD3_k127_2373964_21 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000004062 107.0
YYD3_k127_2373964_22 Proton-conducting membrane transporter K05561 - - 0.000000000000000000004145 95.0
YYD3_k127_2373964_23 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.0000000000000001841 86.0
YYD3_k127_2373964_24 Oxidoreductase NAD-binding domain K21832 - - 0.0000000000000003185 87.0
YYD3_k127_2373964_25 Iron-binding zinc finger CDGSH type - - - 0.0000000000004752 73.0
YYD3_k127_2373964_26 Protein of unknown function, DUF488 - - - 0.0000000003326 62.0
YYD3_k127_2373964_27 Glycosyl hydrolases family 15 - - - 0.000000001872 64.0
YYD3_k127_2373964_28 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00006543 49.0
YYD3_k127_2373964_3 dioxygenase K15777 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0046566,GO:0051213,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709 413.0
YYD3_k127_2373964_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 400.0
YYD3_k127_2373964_5 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 368.0
YYD3_k127_2373964_6 NADPH-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005996 292.0
YYD3_k127_2373964_7 Domain of unknown function (DUF4439) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000153 285.0
YYD3_k127_2373964_8 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001446 253.0
YYD3_k127_2373964_9 Carbamoyl-phosphate synthase L chain, ATP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000006391 229.0
YYD3_k127_2385427_0 3HB-oligomer hydrolase (3HBOH) K07518 - 3.1.1.22 9.297e-204 655.0
YYD3_k127_2385427_1 Belongs to the peptidase S1C family K04691,K04772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 493.0
YYD3_k127_2385427_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000001874 260.0
YYD3_k127_2385427_3 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000001901 209.0
YYD3_k127_2385427_4 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000002091 85.0
YYD3_k127_2394132_0 2-oxoacid ferredoxin oxidoreductase, alpha subunit K00169,K19070 GO:0003674,GO:0003824,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 507.0
YYD3_k127_2394132_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 447.0
YYD3_k127_2394132_2 aerobic-type carbon monoxide dehydrogenase, small subunit CoxS K03518,K04107 - 1.2.5.3,1.3.7.9 0.000000000000000000000000000000000000000000000000000006801 191.0
YYD3_k127_2394132_3 PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.000000000000000000000000000000000000000000000000005571 189.0
YYD3_k127_2394132_4 oxidoreductase gamma subunit K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000002795 179.0
YYD3_k127_2394132_5 - - - - 0.0000000000000000000000000003298 119.0
YYD3_k127_2404992_0 FAD binding domain K10676 - 1.14.13.20 1.52e-229 724.0
YYD3_k127_2404992_1 PFAM monooxygenase FAD-binding K05712 - 1.14.13.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 521.0
YYD3_k127_2404992_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 304.0
YYD3_k127_2404992_3 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 299.0
YYD3_k127_2404992_4 Amidohydrolase - - - 0.000000000000000000000000000000000000001558 149.0
YYD3_k127_2408375_0 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 - 1.1.1.35 7.189e-252 794.0
YYD3_k127_2408375_1 AMP-binding enzyme C-terminal domain K00666,K20034 - 6.2.1.44 3.606e-244 764.0
YYD3_k127_2408375_10 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000001254 236.0
YYD3_k127_2408375_11 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000483 207.0
YYD3_k127_2408375_12 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000007755 177.0
YYD3_k127_2408375_13 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.00000000000000000000000000000001751 130.0
YYD3_k127_2408375_14 - - - - 0.00000000008168 72.0
YYD3_k127_2408375_2 Periplasmic binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 582.0
YYD3_k127_2408375_3 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004877 554.0
YYD3_k127_2408375_4 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 543.0
YYD3_k127_2408375_5 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 469.0
YYD3_k127_2408375_6 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005121 481.0
YYD3_k127_2408375_7 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000459 432.0
YYD3_k127_2408375_8 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006142 339.0
YYD3_k127_2408375_9 GMC oxidoreductase K00108 - 1.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000004703 239.0
YYD3_k127_2408751_0 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 464.0
YYD3_k127_2408751_1 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 396.0
YYD3_k127_2408751_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003689 279.0
YYD3_k127_2408751_3 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005954 256.0
YYD3_k127_2408751_4 PFAM Short-chain dehydrogenase reductase SDR K00059,K03366 - 1.1.1.100,1.1.1.304,1.1.1.76 0.0000000000000000000000000000000000000000000000000000000002599 210.0
YYD3_k127_2408751_5 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000004229 176.0
YYD3_k127_2408751_6 Spore Coat Protein U domain - - - 0.00000000000000000077 87.0
YYD3_k127_2411410_0 reductase, alpha subunit K00394 - 1.8.99.2 0.0 1199.0
YYD3_k127_2411410_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004817 321.0
YYD3_k127_2411410_2 reductase beta subunit K00395 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 314.0
YYD3_k127_2411410_3 PFAM lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001935 259.0
YYD3_k127_2411410_4 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000000000000000000000000000000000000000000000000003116 230.0
YYD3_k127_2411410_5 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000001163 224.0
YYD3_k127_2411410_6 - - - - 0.0000000000000000001872 88.0
YYD3_k127_2411410_7 Major Facilitator Superfamily - - - 0.0000000000000000003866 87.0
YYD3_k127_2412421_0 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 386.0
YYD3_k127_2412421_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001925 252.0
YYD3_k127_2412421_2 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000006587 166.0
YYD3_k127_2412421_3 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000006149 91.0
YYD3_k127_2412421_4 - - - - 0.00000000788 59.0
YYD3_k127_2412421_5 Protein of unknown function (DUF2934) - - - 0.0000001827 59.0
YYD3_k127_2450153_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 9.095e-213 681.0
YYD3_k127_2450153_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 5.015e-212 671.0
YYD3_k127_2450153_10 poly(R)-hydroxyalkanoic acid synthase K03821 - - 0.000000000000000000000000000000000000000000000000000004201 192.0
YYD3_k127_2450153_11 Thiol disulfide interchange protein K03673 - - 0.000000000000000000000000000000000000000000001442 188.0
YYD3_k127_2450153_12 PFAM Sporulation domain protein - - - 0.000000000000000000000000000000000000000005964 163.0
YYD3_k127_2450153_13 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000411 122.0
YYD3_k127_2450153_14 - - - - 0.000000000000004399 76.0
YYD3_k127_2450153_2 TonB dependent receptor K02014 - - 1.155e-200 646.0
YYD3_k127_2450153_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007675 466.0
YYD3_k127_2450153_4 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 453.0
YYD3_k127_2450153_5 PFAM glycosyl transferase family 9 K02849 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000389 432.0
YYD3_k127_2450153_6 Glycosyltransferase Family 4 K02844 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 367.0
YYD3_k127_2450153_7 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003171 282.0
YYD3_k127_2450153_8 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001134 241.0
YYD3_k127_2450153_9 EVE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001441 227.0
YYD3_k127_245157_0 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 566.0
YYD3_k127_245157_1 Ketopantoate hydroxymethyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 505.0
YYD3_k127_245157_2 FCD - - - 0.0000000000000000000000000000000000000000000000000002081 190.0
YYD3_k127_2483571_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1080.0
YYD3_k127_2483571_1 4Fe-4S dicluster domain K00124,K07307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005736 404.0
YYD3_k127_2483571_2 chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009239 359.0
YYD3_k127_2483571_3 Prokaryotic cytochrome b561 K00127 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 322.0
YYD3_k127_2483571_4 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000001342 116.0
YYD3_k127_2483571_5 - - - - 0.000001715 58.0
YYD3_k127_2484071_0 Aldehyde dehydrogenase family K02618,K15514 - 1.2.1.77,1.2.1.91,3.3.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008565 576.0
YYD3_k127_2484071_1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 422.0
YYD3_k127_2484071_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 340.0
YYD3_k127_2484071_3 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 322.0
YYD3_k127_2484071_4 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000009251 166.0
YYD3_k127_2484071_5 Glycine-zipper domain - - - 0.00000000000000000000000000000000000000009281 158.0
YYD3_k127_2484071_6 - - - - 0.0000000000000000000000000001572 118.0
YYD3_k127_2484071_7 Belongs to the 'phage' integrase family - - - 0.00000000000007486 74.0
YYD3_k127_2506956_0 His Kinase A (phospho-acceptor) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006889 358.0
YYD3_k127_2506956_1 response regulator K07715 - - 0.00000000000000000000000000000000000000000000000000000000000006243 218.0
YYD3_k127_2506956_2 Capsular exopolysaccharide family K08252,K16692 - 2.7.10.1 0.000000000000000000001163 104.0
YYD3_k127_2506956_3 Protein conserved in bacteria - - - 0.00000000000000000002965 100.0
YYD3_k127_2506956_4 Serine acetyltransferase K00640 - 2.3.1.30 0.0000000000001366 83.0
YYD3_k127_2524840_0 chromosome segregation K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 382.0
YYD3_k127_2524840_1 Glutathione S-transferase K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000002033 157.0
YYD3_k127_2568251_0 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 430.0
YYD3_k127_2568251_1 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 402.0
YYD3_k127_2568251_2 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 371.0
YYD3_k127_2568251_3 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002514 241.0
YYD3_k127_2568251_4 oxidation-reduction process - - - 0.000000000000000000000000000000000000000000000000000005755 202.0
YYD3_k127_2568251_5 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.000000000222 62.0
YYD3_k127_2602634_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 1.383e-256 804.0
YYD3_k127_2602634_1 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006429 589.0
YYD3_k127_2602634_10 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000006518 213.0
YYD3_k127_2602634_11 peptidase K06194 - - 0.00000000000000000000000000000000000000000000000000000005162 207.0
YYD3_k127_2602634_12 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000000004484 184.0
YYD3_k127_2602634_13 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000000001879 193.0
YYD3_k127_2602634_2 Surface antigen K07278 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 378.0
YYD3_k127_2602634_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 358.0
YYD3_k127_2602634_4 Lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 308.0
YYD3_k127_2602634_5 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005064 278.0
YYD3_k127_2602634_6 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000915 278.0
YYD3_k127_2602634_7 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005277 272.0
YYD3_k127_2602634_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000002643 267.0
YYD3_k127_2602634_9 Protein of unknown function (DUF3501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002701 251.0
YYD3_k127_2616142_0 BT1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 587.0
YYD3_k127_2616142_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086 548.0
YYD3_k127_2616142_2 deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 439.0
YYD3_k127_2616142_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 293.0
YYD3_k127_2616142_4 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003871 255.0
YYD3_k127_2616142_5 Ketosteroid isomerase-related protein - - - 0.0000000000000000000000000000000000000000000000000000000000002264 213.0
YYD3_k127_2616142_6 BON domain - - - 0.000000000000000000000000000000000000000000000000000000006013 208.0
YYD3_k127_2616142_7 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000004097 156.0
YYD3_k127_2616142_8 Protein of unknown function (DUF1272) K09984 - - 0.0000000000000000000000000000003512 128.0
YYD3_k127_2625648_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1414.0
YYD3_k127_2625648_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000001281 244.0
YYD3_k127_2625648_2 - - - - 0.000000002 63.0
YYD3_k127_2628308_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 1.106e-217 684.0
YYD3_k127_2628308_1 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 524.0
YYD3_k127_2628308_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 514.0
YYD3_k127_2628308_3 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000001835 236.0
YYD3_k127_2628308_4 Secondary thiamine-phosphate synthase enzyme - - - 0.00000000000000000000000000000000000000000000000000002793 190.0
YYD3_k127_2628308_5 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000009934 131.0
YYD3_k127_2628308_6 PFAM MaoC like domain - - - 0.0000000000000000000001252 109.0
YYD3_k127_2656274_0 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 1.134e-252 814.0
YYD3_k127_2656274_1 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 297.0
YYD3_k127_2656274_2 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 293.0
YYD3_k127_2656274_3 Belongs to the binding-protein-dependent transport system permease family K10440,K10553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008148 269.0
YYD3_k127_2656274_4 TIGRFAM SagB-type dehydrogenase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002229 258.0
YYD3_k127_2656274_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000001391 155.0
YYD3_k127_2656274_6 IMP dehydrogenase activity - - - 0.000000000000000000000000000009788 126.0
YYD3_k127_2656274_7 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000003608 115.0
YYD3_k127_2656274_8 Phage regulatory protein - - - 0.0000001493 54.0
YYD3_k127_2656274_9 Periplasmic binding proteins and sugar binding domain of LacI family K10439,K17202,K17205,K17213 - - 0.00000236 59.0
YYD3_k127_2659667_0 Protein of unknown function - - - 1.148e-279 902.0
YYD3_k127_2659667_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.199e-269 857.0
YYD3_k127_2659667_10 Low affinity iron permease - - - 0.00000000000000000000000000000000000000000000006432 173.0
YYD3_k127_2659667_11 Protein of unknown function (DUF3047) - - - 0.00000000000000000000000000000000000000001087 164.0
YYD3_k127_2659667_12 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000001844 94.0
YYD3_k127_2659667_13 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000007688 93.0
YYD3_k127_2659667_2 Putative modulator of DNA gyrase K03568 - - 8.48e-227 710.0
YYD3_k127_2659667_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 328.0
YYD3_k127_2659667_4 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01039 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 328.0
YYD3_k127_2659667_5 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 310.0
YYD3_k127_2659667_6 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009264 300.0
YYD3_k127_2659667_7 COG2057 Acyl CoA acetate 3-ketoacid CoA transferase, beta subunit K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000006635 257.0
YYD3_k127_2659667_8 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000000000000000000000000000000000000000001909 239.0
YYD3_k127_2659667_9 ABC transporter substrate binding protein - - - 0.000000000000000000000000000000000000000000000000000000000001016 218.0
YYD3_k127_2662019_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1186.0
YYD3_k127_2662019_1 ABC1 family - - - 0.0000000000000000000000000000005374 127.0
YYD3_k127_2679914_0 peptidase m48, ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 445.0
YYD3_k127_2679914_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 417.0
YYD3_k127_2679914_2 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000003865 239.0
YYD3_k127_2679914_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000003959 203.0
YYD3_k127_2679914_4 Haem-degrading - - - 0.0000000000000000000000000000000000000000000000003027 184.0
YYD3_k127_2679914_5 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000000000000000002003 99.0
YYD3_k127_2687865_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 1.196e-208 665.0
YYD3_k127_2687865_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 4.47e-198 625.0
YYD3_k127_2687865_2 transferase activity, transferring glycosyl groups K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 592.0
YYD3_k127_2687865_3 SPTR MCP methyltransferase, CheR-type with PAS PAC sensor K00575,K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000002527 239.0
YYD3_k127_2687865_4 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.00000000000000000000000000000000000000000000000000001475 202.0
YYD3_k127_2687865_5 COG0438 Glycosyltransferase - - - 0.0000000000000000000000000000000000000000002798 172.0
YYD3_k127_2687865_6 Methyltransferase domain - - - 0.00000000000000002622 94.0
YYD3_k127_2687865_7 GDSL-like Lipase/Acylhydrolase - - - 0.00000497 59.0
YYD3_k127_2687865_8 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.00009728 45.0
YYD3_k127_2697636_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 9.242e-282 872.0
YYD3_k127_2697636_1 Pfam:DUF1446 - - - 1.018e-209 664.0
YYD3_k127_2697636_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007128 548.0
YYD3_k127_2697636_3 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 422.0
YYD3_k127_2697636_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 379.0
YYD3_k127_2697636_5 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009894 361.0
YYD3_k127_2697636_6 - - - - 0.0000000000000000000000000000000000000000001173 166.0
YYD3_k127_2697636_7 Domain of unknown function (DUF4387) - - - 0.000000000000000000000000000000105 132.0
YYD3_k127_2697636_8 PFAM ABC transporter K02049,K15555 - - 0.00000000000000000000003126 99.0
YYD3_k127_2697636_9 Protein of unknown function VcgC/VcgE (DUF2780) - - - 0.00000000001501 71.0
YYD3_k127_2701947_0 amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006281 505.0
YYD3_k127_2701947_1 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 479.0
YYD3_k127_2701947_2 Pyruvate carboxyltransferase K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 393.0
YYD3_k127_2701947_3 leucyl aminopeptidase, aminopeptidase T K18028 - 1.13.11.9 0.000000000000000000000000000000000000000000000000000000000000007503 226.0
YYD3_k127_2701947_4 Haem-degrading - - - 0.00000000000000000000000000000000000000000000000000000000003966 220.0
YYD3_k127_2701947_5 Major Facilitator Superfamily - - - 0.0001477 46.0
YYD3_k127_2704777_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.531e-292 909.0
YYD3_k127_2704777_1 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 4.572e-254 793.0
YYD3_k127_2704777_2 extracellular solute-binding protein, family 1 K02020,K22003 - 5.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 326.0
YYD3_k127_2704777_3 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000002095 236.0
YYD3_k127_2704777_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000007383 126.0
YYD3_k127_2704777_5 Forkhead associated domain - - - 0.0000000001828 65.0
YYD3_k127_2704777_6 - - - - 0.00000001313 57.0
YYD3_k127_2704777_7 Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000002544 52.0
YYD3_k127_2704777_8 DsrE/DsrF-like family - - - 0.0000551 49.0
YYD3_k127_2704777_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0002798 43.0
YYD3_k127_2708595_0 PrkA AAA domain K07180 - - 9.503e-314 971.0
YYD3_k127_2708595_1 Protein of unknown function (DUF444) K09786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 431.0
YYD3_k127_2708595_2 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008258 385.0
YYD3_k127_2708595_3 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000245 225.0
YYD3_k127_2708595_4 MAPEG family - - - 0.000000000000000000000000000000000000000002608 158.0
YYD3_k127_2708595_5 - - - - 0.00000000000001803 78.0
YYD3_k127_2708595_6 SpoVR like protein K06415 - - 0.000001791 50.0
YYD3_k127_2713817_0 Periplasmic binding protein domain K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 316.0
YYD3_k127_2713817_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007134 286.0
YYD3_k127_2713817_2 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000001556 199.0
YYD3_k127_2713817_3 transcriptional regulator - - - 0.0000000000000000000000000000000000000000001489 166.0
YYD3_k127_2725941_0 Rieske [2Fe-2S] domain - - - 1.846e-203 640.0
YYD3_k127_2725941_1 glutamine synthetase K01915 - 6.3.1.2 1.152e-195 624.0
YYD3_k127_2725941_10 PAS domain - - - 0.0000002897 59.0
YYD3_k127_2725941_2 Cupin domain K00450 - 1.13.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009676 409.0
YYD3_k127_2725941_3 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 409.0
YYD3_k127_2725941_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 357.0
YYD3_k127_2725941_5 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000328 323.0
YYD3_k127_2725941_6 COG0410 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 314.0
YYD3_k127_2725941_7 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 302.0
YYD3_k127_2725941_8 PFAM ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000001539 242.0
YYD3_k127_2725941_9 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000008114 234.0
YYD3_k127_2732735_0 Tripartite tricarboxylate transporter TctA family - - - 5.579e-207 654.0
YYD3_k127_2732735_1 MmgE/PrpD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 449.0
YYD3_k127_2732735_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 343.0
YYD3_k127_2732735_3 FAD binding domain - - - 0.00000000000000000000000000000000002921 136.0
YYD3_k127_2732735_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.000000000000000000000000000000004634 137.0
YYD3_k127_2732735_6 PFAM short chain dehydrogenase K00059 - 1.1.1.100 0.00000000000000000003683 94.0
YYD3_k127_2732735_7 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.00000000001337 76.0
YYD3_k127_2737_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 4.305e-219 689.0
YYD3_k127_2737_1 Belongs to the glycosyl hydrolase 32 family K01193,K01212 - 3.2.1.26,3.2.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007793 449.0
YYD3_k127_2737_2 Fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000001297 232.0
YYD3_k127_2737_3 Tetrapyrrole (Corrin/Porphyrin) Methylases K02303 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000007033 230.0
YYD3_k127_2737_4 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0000000000000000000000000000000000000001691 160.0
YYD3_k127_2737_5 Bacterial protein of unknown function (DUF934) - - - 0.000000000000000000000001081 108.0
YYD3_k127_2740311_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 6.835e-205 656.0
YYD3_k127_2740311_1 VWA domain containing CoxE-like protein K09989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 571.0
YYD3_k127_2740311_2 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 293.0
YYD3_k127_2740311_3 Belongs to the ArsC family K00537 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.20.4.1 0.00000000000000000000000000000000002472 138.0
YYD3_k127_2740311_4 FMN-dependent dehydrogenase K00104 - 1.1.3.15 0.0000000000000000000000000000000001297 136.0
YYD3_k127_2747358_0 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 294.0
YYD3_k127_2747358_1 Bacterial protein of unknown function (DUF899) K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000006253 213.0
YYD3_k127_2747358_2 FKBP-type peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000000000000000000000000009948 143.0
YYD3_k127_2747358_3 TrkA-C domain - - - 0.0000000000000000000003102 104.0
YYD3_k127_2747358_4 - - - - 0.0000000000000000001118 101.0
YYD3_k127_2761311_0 DNA segregation ATPase FtsK SpoIIIE K03466 - - 1.287e-294 922.0
YYD3_k127_2761311_1 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 2.363e-258 810.0
YYD3_k127_2761311_10 PFAM Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002966 337.0
YYD3_k127_2761311_11 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 299.0
YYD3_k127_2761311_12 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000001103 263.0
YYD3_k127_2761311_13 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000003392 255.0
YYD3_k127_2761311_14 Transcriptional regulator crp fnr family K10914 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 255.0
YYD3_k127_2761311_15 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000006235 250.0
YYD3_k127_2761311_16 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000000000000000000000000000000000001055 221.0
YYD3_k127_2761311_17 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.000000000000000000000000000000000000000000000000000000000001575 220.0
YYD3_k127_2761311_18 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000000000000001036 201.0
YYD3_k127_2761311_19 KR domain - - - 0.00000000000000000000000000000000000000000000000000000766 198.0
YYD3_k127_2761311_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 7.475e-220 707.0
YYD3_k127_2761311_20 Protein of unknown function (DUF3025) - - - 0.00000000000000000000000000000000000000000000000003644 193.0
YYD3_k127_2761311_21 Small MutS-related domain - - - 0.0000000000000000000000000000000000000000001016 165.0
YYD3_k127_2761311_22 BON domain - - - 0.00000000000000000000000000000000000000003404 167.0
YYD3_k127_2761311_23 HIRAN - - - 0.00000000000000000000000000000002811 134.0
YYD3_k127_2761311_24 Tetratricopeptide repeat - - - 0.000000000000000000000000001186 121.0
YYD3_k127_2761311_25 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000021 113.0
YYD3_k127_2761311_26 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000003989 108.0
YYD3_k127_2761311_27 - - - - 0.000000000000000001988 93.0
YYD3_k127_2761311_28 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000002867 91.0
YYD3_k127_2761311_29 Diguanylate cyclase - - - 0.00000005106 63.0
YYD3_k127_2761311_3 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 594.0
YYD3_k127_2761311_31 - - - - 0.0005298 45.0
YYD3_k127_2761311_4 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 535.0
YYD3_k127_2761311_5 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 519.0
YYD3_k127_2761311_6 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 494.0
YYD3_k127_2761311_7 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 488.0
YYD3_k127_2761311_8 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 488.0
YYD3_k127_2761311_9 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007581 420.0
YYD3_k127_2764375_0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007546 585.0
YYD3_k127_2764375_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 570.0
YYD3_k127_2764375_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000502 337.0
YYD3_k127_2764375_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 285.0
YYD3_k127_2764375_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002363 274.0
YYD3_k127_2764375_5 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000001924 255.0
YYD3_k127_2764375_6 MmgE/PrpD family - - - 0.0000000000000000304 81.0
YYD3_k127_2877731_0 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 498.0
YYD3_k127_2877731_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007202 342.0
YYD3_k127_2877731_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 294.0
YYD3_k127_2905003_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1880.0
YYD3_k127_2905003_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 344.0
YYD3_k127_2905003_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001307 246.0
YYD3_k127_2905003_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004073 241.0
YYD3_k127_2905003_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000000000002476 227.0
YYD3_k127_2905003_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000002177 165.0
YYD3_k127_2910499_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0 1153.0
YYD3_k127_2910499_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 483.0
YYD3_k127_2910499_10 Two component transcriptional regulator, LuxR family - - - 0.0000000000000009321 82.0
YYD3_k127_2910499_11 histidine kinase HAMP region domain protein - - - 0.000000000000005452 88.0
YYD3_k127_2910499_12 - - - - 0.0003061 48.0
YYD3_k127_2910499_2 CoA-transferase family III K07749 - 2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 408.0
YYD3_k127_2910499_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000861 362.0
YYD3_k127_2910499_4 helix_turn_helix, Lux Regulon K14979 - - 0.0000000000000000000000000000000000000000000000000000000009801 215.0
YYD3_k127_2910499_5 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000001513 212.0
YYD3_k127_2910499_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000002117 166.0
YYD3_k127_2910499_7 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000001262 141.0
YYD3_k127_2910499_8 Histidine kinase - - - 0.00000000000000000000000000000003071 131.0
YYD3_k127_2910499_9 response regulator, receiver - - - 0.0000000000000000001413 96.0
YYD3_k127_2911716_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1172.0
YYD3_k127_2911716_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 4.505e-256 805.0
YYD3_k127_2911716_2 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006858 510.0
YYD3_k127_2911716_3 Protein of unknown function (DUF3641) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 426.0
YYD3_k127_2911716_4 COG2998 ABC-type tungstate transport system, permease component K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 387.0
YYD3_k127_2911716_5 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000000000000000000178 218.0
YYD3_k127_2911716_6 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000003226 191.0
YYD3_k127_2911716_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000001193 168.0
YYD3_k127_2911716_8 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000001092 94.0
YYD3_k127_2911716_9 ATPases associated with a variety of cellular activities K06857 - 3.6.3.55 0.0000000001803 62.0
YYD3_k127_291387_0 FAD linked oxidase domain protein K06911 - - 0.0 1165.0
YYD3_k127_291387_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 422.0
YYD3_k127_291387_10 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001716 286.0
YYD3_k127_291387_11 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001175 267.0
YYD3_k127_291387_12 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004267 257.0
YYD3_k127_291387_13 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000001103 175.0
YYD3_k127_291387_14 - - - - 0.00000000000000000268 90.0
YYD3_k127_291387_15 ankyrin repeat K15503 - - 0.00000000008606 74.0
YYD3_k127_291387_16 Tripartite tricarboxylate transporter family receptor - - - 0.00005115 53.0
YYD3_k127_291387_2 PFAM ABC transporter related K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 359.0
YYD3_k127_291387_3 COG0501 Zn-dependent protease with chaperone function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 375.0
YYD3_k127_291387_4 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 364.0
YYD3_k127_291387_5 luciferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 345.0
YYD3_k127_291387_6 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 340.0
YYD3_k127_291387_7 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 348.0
YYD3_k127_291387_8 ATP ADP translocase K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 328.0
YYD3_k127_291387_9 COG0501 Zn-dependent protease with chaperone function - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 324.0
YYD3_k127_2922893_0 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008267 454.0
YYD3_k127_2922893_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009534 282.0
YYD3_k127_2922893_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001592 275.0
YYD3_k127_2922893_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000002236 222.0
YYD3_k127_2944867_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 1.173e-229 720.0
YYD3_k127_2944867_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 369.0
YYD3_k127_2944867_2 Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 303.0
YYD3_k127_2944867_3 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.00000000000000000000000000000000000000004978 157.0
YYD3_k127_2944867_4 Ribonuclease K01167 - 3.1.27.3 0.00000000000000000000000000000001968 129.0
YYD3_k127_2944867_5 Fe-S protein K07140 - - 0.0000000000000000000000000000000226 140.0
YYD3_k127_2944867_6 (barnase) inhibitor - - - 0.00000000000000003236 88.0
YYD3_k127_2944867_7 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0009245 52.0
YYD3_k127_2950300_0 PAS fold - - - 1.304e-207 663.0
YYD3_k127_2950300_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 454.0
YYD3_k127_2950300_2 Cache domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000003073 250.0
YYD3_k127_2950300_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000004272 228.0
YYD3_k127_2950300_4 Voltage-dependent anion channel K03304 - - 0.00000000000000000000000000000000089 142.0
YYD3_k127_2950300_5 PFAM response regulator receiver - - - 0.0000000000000000000000001287 110.0
YYD3_k127_2950300_6 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000001001 101.0
YYD3_k127_2953105_0 Uncharacterized protein conserved in bacteria (DUF2090) K03338 - 2.7.1.92 5.854e-302 944.0
YYD3_k127_2953105_1 KduI/IolB family K03337 - 5.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 428.0
YYD3_k127_2953105_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 330.0
YYD3_k127_2953105_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000001427 222.0
YYD3_k127_2953105_4 Histidine phosphatase superfamily (branch 1) - - - 0.0000000000000000000000000000000000000000000000008416 182.0
YYD3_k127_2953105_5 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000002232 128.0
YYD3_k127_2953105_6 electron transfer activity K02305,K08738 - - 0.00000000000000000003441 96.0
YYD3_k127_2965698_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07715 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 289.0
YYD3_k127_2965698_1 Major Facilitator Superfamily - - - 0.000000001885 69.0
YYD3_k127_2965698_2 Protein of unknown function (DUF1223) - - - 0.000000006257 68.0
YYD3_k127_2965698_3 DNA-sulfur modification-associated - - - 0.0005261 52.0
YYD3_k127_2968363_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 550.0
YYD3_k127_2968363_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009501 522.0
YYD3_k127_2968363_10 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 334.0
YYD3_k127_2968363_11 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 319.0
YYD3_k127_2968363_12 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003687 275.0
YYD3_k127_2968363_13 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006178 280.0
YYD3_k127_2968363_14 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000624 250.0
YYD3_k127_2968363_15 VacJ family lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000000000008831 248.0
YYD3_k127_2968363_16 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000004047 248.0
YYD3_k127_2968363_17 PFAM Mammalian cell entry related domain protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000000101 218.0
YYD3_k127_2968363_18 MlaC protein K07323 - - 0.000000000000000000000000000000000000000000000000000000000005363 219.0
YYD3_k127_2968363_19 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000000105 200.0
YYD3_k127_2968363_2 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002953 397.0
YYD3_k127_2968363_20 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000000000003887 169.0
YYD3_k127_2968363_21 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.000000000000000000000000000000000009483 138.0
YYD3_k127_2968363_22 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.000000000000000000000000002824 120.0
YYD3_k127_2968363_23 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000001027 111.0
YYD3_k127_2968363_24 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000003261 103.0
YYD3_k127_2968363_25 Belongs to the BolA IbaG family - - - 0.0000000000000000112 94.0
YYD3_k127_2968363_26 STAS domain K07122 - - 0.0000001187 63.0
YYD3_k127_2968363_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 392.0
YYD3_k127_2968363_4 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 383.0
YYD3_k127_2968363_5 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 386.0
YYD3_k127_2968363_6 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 379.0
YYD3_k127_2968363_7 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 346.0
YYD3_k127_2968363_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008712 348.0
YYD3_k127_2968363_9 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006346 337.0
YYD3_k127_2971318_0 Bacterial protein of unknown function (DUF853) K06915 - - 1.945e-201 641.0
YYD3_k127_2971318_1 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 375.0
YYD3_k127_2971318_2 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 367.0
YYD3_k127_2971318_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 304.0
YYD3_k127_2971318_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001122 267.0
YYD3_k127_2971318_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000005106 239.0
YYD3_k127_2971318_6 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000000008209 231.0
YYD3_k127_2971318_7 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.00000000000000000000000000000125 124.0
YYD3_k127_2978921_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 432.0
YYD3_k127_2978921_1 Tyrosine recombinase xerD K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 360.0
YYD3_k127_2978921_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000007236 216.0
YYD3_k127_2978921_3 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily - - - 0.00000000000000000000000000000000000000000000000000000002253 208.0
YYD3_k127_2978921_4 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000000000000694 122.0
YYD3_k127_2978921_5 COG0350 Methylated DNA-protein cysteine methyltransferase K00567 - 2.1.1.63 0.00000000000000000000001549 100.0
YYD3_k127_2978921_6 Yqey-like protein K09117 - - 0.00000000002586 66.0
YYD3_k127_2985359_0 Amidohydrolase family - - - 1.816e-195 627.0
YYD3_k127_2985359_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000018 202.0
YYD3_k127_2985359_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000001855 95.0
YYD3_k127_2985397_0 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000006447 188.0
YYD3_k127_2985397_1 Catalyzes the transfer of an acetyl group from acetyl- CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring K18816 GO:0003674,GO:0003824,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0034069,GO:0042221,GO:0046677,GO:0047663,GO:0050896 2.3.1.82 0.00000000000000000000000000000000000000000000000003261 183.0
YYD3_k127_2985397_2 MarR family transcriptional regulator - - - 0.00000000000000000000000000000000000000000005811 164.0
YYD3_k127_2985397_3 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000003206 157.0
YYD3_k127_2985397_4 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000005078 129.0
YYD3_k127_2985397_5 PFAM glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000004542 120.0
YYD3_k127_2987968_0 ABC transporter transmembrane region K02021 - - 4.182e-273 865.0
YYD3_k127_2987968_1 Aldehyde dehydrogenase K00128,K00130 - 1.2.1.3,1.2.1.8 4.353e-206 650.0
YYD3_k127_2987968_10 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000007918 104.0
YYD3_k127_2987968_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 417.0
YYD3_k127_2987968_3 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 364.0
YYD3_k127_2987968_4 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 299.0
YYD3_k127_2987968_5 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006871 263.0
YYD3_k127_2987968_6 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00001,K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000004066 254.0
YYD3_k127_2987968_7 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000001844 241.0
YYD3_k127_2987968_8 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000028 206.0
YYD3_k127_2987968_9 cyclic nucleotide-binding - - - 0.0000000000000000000000000000000003597 152.0
YYD3_k127_3039169_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 611.0
YYD3_k127_3039169_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006629 291.0
YYD3_k127_3039169_2 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001188 287.0
YYD3_k127_3046126_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 349.0
YYD3_k127_3046126_1 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00001,K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 289.0
YYD3_k127_3046126_2 LysE type translocator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005594 276.0
YYD3_k127_3046126_3 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000111 251.0
YYD3_k127_3046126_4 SMART cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000000002434 209.0
YYD3_k127_312097_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1431.0
YYD3_k127_312097_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004191 553.0
YYD3_k127_312097_2 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 414.0
YYD3_k127_312097_3 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001156 279.0
YYD3_k127_312097_4 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000000000000000432 208.0
YYD3_k127_312097_5 regulatory - - - 0.000000000000000000000000000000000000000000000000000005651 200.0
YYD3_k127_312097_6 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000003928 145.0
YYD3_k127_312097_7 Regulatory protein, FmdB family - - - 0.0000000000000000000000321 109.0
YYD3_k127_3137915_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 4.386e-284 879.0
YYD3_k127_3137915_1 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.027e-228 717.0
YYD3_k127_3137915_10 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 369.0
YYD3_k127_3137915_11 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 370.0
YYD3_k127_3137915_12 oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007735 360.0
YYD3_k127_3137915_13 Fatty acid desaturase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 346.0
YYD3_k127_3137915_14 RNA polymerase sigma factor RpoH K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008114 343.0
YYD3_k127_3137915_15 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008185 329.0
YYD3_k127_3137915_16 GHMP kinases N terminal domain K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009763 299.0
YYD3_k127_3137915_17 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004897 286.0
YYD3_k127_3137915_18 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004965 250.0
YYD3_k127_3137915_19 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000006539 240.0
YYD3_k127_3137915_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 567.0
YYD3_k127_3137915_20 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000002533 241.0
YYD3_k127_3137915_21 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000006511 235.0
YYD3_k127_3137915_22 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000001101 228.0
YYD3_k127_3137915_23 oxidase assembly K02258 - - 0.0000000000000000000000000000000000000000000000000000000000000005896 229.0
YYD3_k127_3137915_24 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000255 224.0
YYD3_k127_3137915_25 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000001221 224.0
YYD3_k127_3137915_26 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000000000000001055 211.0
YYD3_k127_3137915_27 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000000000000000000000000000000002131 205.0
YYD3_k127_3137915_28 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000000000001861 189.0
YYD3_k127_3137915_29 RNA methyltransferase, RsmD family - - - 0.000000000000000000000000000000000000000000000000002169 190.0
YYD3_k127_3137915_3 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 510.0
YYD3_k127_3137915_30 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000007824 178.0
YYD3_k127_3137915_31 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000001354 169.0
YYD3_k127_3137915_32 signal sequence binding - - - 0.00000000000000000000000000000000000000002165 160.0
YYD3_k127_3137915_33 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000006881 137.0
YYD3_k127_3137915_34 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0000000000000000000000000000004831 124.0
YYD3_k127_3137915_35 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000001487 134.0
YYD3_k127_3137915_36 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.00000000000000000000006502 111.0
YYD3_k127_3137915_37 Integral membrane protein (DUF2244) - - - 0.00000000000000000004659 98.0
YYD3_k127_3137915_38 Protein of unknown function (DUF2909) - - - 0.000002563 57.0
YYD3_k127_3137915_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003165 502.0
YYD3_k127_3137915_5 SMART Tetratricopeptide domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 478.0
YYD3_k127_3137915_6 Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 460.0
YYD3_k127_3137915_7 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 436.0
YYD3_k127_3137915_8 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 394.0
YYD3_k127_3137915_9 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 392.0
YYD3_k127_316624_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007153 526.0
YYD3_k127_316624_1 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11745,K11747 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005425 514.0
YYD3_k127_316624_10 Cupin - - - 0.0000000000000000000000000000000000000000000006889 171.0
YYD3_k127_316624_11 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000000000003736 177.0
YYD3_k127_316624_12 - - - - 0.0000000000000000000000000000000000003403 152.0
YYD3_k127_316624_13 Predicted integral membrane protein (DUF2282) - - - 0.00000000000000000000000007687 115.0
YYD3_k127_316624_14 - - - - 0.0000000000000000000000000944 111.0
YYD3_k127_316624_15 - - - - 0.00000000000001225 81.0
YYD3_k127_316624_17 Bacterial protein of unknown function (DUF883) - GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0043021,GO:0043024,GO:0044464,GO:0044877,GO:0060187,GO:0071944 - 0.00000001334 62.0
YYD3_k127_316624_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 476.0
YYD3_k127_316624_3 Patatin phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 455.0
YYD3_k127_316624_4 FAD binding domain K09828 - 1.3.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 452.0
YYD3_k127_316624_5 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 421.0
YYD3_k127_316624_6 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 433.0
YYD3_k127_316624_7 Enoyl-(Acyl carrier protein) reductase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 382.0
YYD3_k127_316624_8 Domain of unknown function (DUF1993) K09983 - - 0.0000000000000000000000000000000000000000000000000000000000004753 215.0
YYD3_k127_316624_9 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000001515 194.0
YYD3_k127_317471_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1210.0
YYD3_k127_317471_1 dna topoisomerase III K03169 - 5.99.1.2 1.571e-201 639.0
YYD3_k127_317471_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 391.0
YYD3_k127_3175830_0 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 6.377e-242 766.0
YYD3_k127_3175830_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 1.41e-236 752.0
YYD3_k127_3175830_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006314 486.0
YYD3_k127_3175830_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 464.0
YYD3_k127_3175830_4 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000001649 151.0
YYD3_k127_3180755_0 Patatin phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 364.0
YYD3_k127_3180755_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 306.0
YYD3_k127_3180755_2 OsmC-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000009036 232.0
YYD3_k127_3180755_3 PFAM MaoC domain protein dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000005673 226.0
YYD3_k127_3190203_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 361.0
YYD3_k127_3190203_1 Glutathione S-transferase K03599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 328.0
YYD3_k127_3190203_2 Cytochrome C1 family K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005504 265.0
YYD3_k127_3190203_3 Stringent starvation protein B K03600 - - 0.00000000000000000001063 93.0
YYD3_k127_3193216_0 Belongs to the malate synthase family K01638 - 2.3.3.9 9.978e-240 752.0
YYD3_k127_3193216_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 1.091e-215 677.0
YYD3_k127_3193216_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008642 494.0
YYD3_k127_3193216_3 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006668 394.0
YYD3_k127_3193216_4 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 359.0
YYD3_k127_3193216_5 Domain of unknown function (DUF4124) - - - 0.000000000000000000000000001159 118.0
YYD3_k127_3193216_6 - - - - 0.0000000000000001115 86.0
YYD3_k127_3193216_7 Amidohydrolase family - - - 0.000000005478 61.0
YYD3_k127_3200784_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 543.0
YYD3_k127_3200784_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 539.0
YYD3_k127_3200784_10 OmpA family - - - 0.00000000000005549 77.0
YYD3_k127_3200784_11 - - - - 0.00001663 48.0
YYD3_k127_3200784_2 PFAM MotA TolQ ExbB proton channel K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 315.0
YYD3_k127_3200784_3 Sulphur transport K07112 - - 0.000000000000000000000000000000000000000000000000000000001956 209.0
YYD3_k127_3200784_4 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000002329 191.0
YYD3_k127_3200784_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000007613 191.0
YYD3_k127_3200784_6 TonB C terminal K03646 - - 0.0000000000000000000000000000000000008903 149.0
YYD3_k127_3200784_7 Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000002975 131.0
YYD3_k127_3200784_8 PFAM thioesterase superfamily protein K07107 - - 0.0000000000000000000000000000003831 128.0
YYD3_k127_3200784_9 OmpA-like transmembrane domain - - - 0.00000000000000000004282 100.0
YYD3_k127_3223015_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 1.145e-274 876.0
YYD3_k127_3223015_1 signal peptide protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001121 248.0
YYD3_k127_3223015_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000002768 241.0
YYD3_k127_3223015_3 - - - - 0.0000000173 62.0
YYD3_k127_3223015_4 - - - - 0.00001506 49.0
YYD3_k127_3236392_0 glycosyltransferase 36 associated K00702,K13688 - 2.4.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003372 488.0
YYD3_k127_3236392_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 461.0
YYD3_k127_3236392_2 Esterase PHB depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007215 359.0
YYD3_k127_3236392_3 positive regulation of growth K07746 - - 0.000000000000000000000000000000000000000000000004543 175.0
YYD3_k127_3236392_5 Histidine kinase - - - 0.000000000000001906 79.0
YYD3_k127_3236392_6 RNA recognition motif - - - 0.000000000153 69.0
YYD3_k127_3236392_7 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000001381 57.0
YYD3_k127_3236392_8 helix_turn_helix, Lux Regulon - - - 0.0001744 49.0
YYD3_k127_3236392_9 helix_turn_helix, Lux Regulon - - - 0.0005941 48.0
YYD3_k127_3238453_0 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 570.0
YYD3_k127_3238453_1 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 498.0
YYD3_k127_3238453_2 Major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 366.0
YYD3_k127_3238453_3 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000004804 241.0
YYD3_k127_3238453_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000002863 220.0
YYD3_k127_3238453_5 - - - - 0.0003221 53.0
YYD3_k127_3245340_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1455.0
YYD3_k127_3245340_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1035.0
YYD3_k127_3245340_10 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003216 486.0
YYD3_k127_3245340_11 PFAM Aminotransferase class I and II K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 475.0
YYD3_k127_3245340_12 Type II/IV secretion system protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004326 465.0
YYD3_k127_3245340_13 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008944 463.0
YYD3_k127_3245340_14 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 428.0
YYD3_k127_3245340_15 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 433.0
YYD3_k127_3245340_16 Psort location Cytoplasmic, score 8.96 K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 405.0
YYD3_k127_3245340_17 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 400.0
YYD3_k127_3245340_18 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 395.0
YYD3_k127_3245340_19 Belongs to the transferase hexapeptide repeat family K00674 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008666,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 396.0
YYD3_k127_3245340_2 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1015.0
YYD3_k127_3245340_20 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 365.0
YYD3_k127_3245340_21 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003365 351.0
YYD3_k127_3245340_22 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 379.0
YYD3_k127_3245340_23 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005515 351.0
YYD3_k127_3245340_24 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 349.0
YYD3_k127_3245340_25 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009044 351.0
YYD3_k127_3245340_26 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005182 321.0
YYD3_k127_3245340_27 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 314.0
YYD3_k127_3245340_28 tRNA pseudouridylate synthase B C-terminal domain K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003736 278.0
YYD3_k127_3245340_29 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001202 275.0
YYD3_k127_3245340_3 Required for chromosome condensation and partitioning K03529 - - 1.3e-322 1024.0
YYD3_k127_3245340_30 S4 RNA-binding domain K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000001653 271.0
YYD3_k127_3245340_31 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001437 262.0
YYD3_k127_3245340_32 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003917 256.0
YYD3_k127_3245340_33 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004002 248.0
YYD3_k127_3245340_34 Belongs to the protein N5-glutamine methyltransferase family K07320 - 2.1.1.298 0.000000000000000000000000000000000000000000000000000000000000000000000005657 262.0
YYD3_k127_3245340_35 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000008544 254.0
YYD3_k127_3245340_36 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000001682 232.0
YYD3_k127_3245340_37 phosphoribosyltransferase K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000003624 215.0
YYD3_k127_3245340_38 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000000000000000000005917 212.0
YYD3_k127_3245340_39 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016651,GO:0016657,GO:0018130,GO:0019438,GO:0033739,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000009573 203.0
YYD3_k127_3245340_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 2.205e-291 912.0
YYD3_k127_3245340_40 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000002144 191.0
YYD3_k127_3245340_41 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000000648 173.0
YYD3_k127_3245340_42 Belongs to the skp family K06142 - - 0.000000000000000000000000000000000000000000000221 175.0
YYD3_k127_3245340_43 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000004494 179.0
YYD3_k127_3245340_44 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000004582 162.0
YYD3_k127_3245340_45 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000003042 127.0
YYD3_k127_3245340_46 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000002043 129.0
YYD3_k127_3245340_47 PFAM CHAD domain containing protein - - - 0.00000000000000000000000004455 119.0
YYD3_k127_3245340_48 Putative peptidoglycan binding domain - - - 0.00000000000000000003627 96.0
YYD3_k127_3245340_49 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.0000000000000000002985 97.0
YYD3_k127_3245340_5 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 2.147e-290 927.0
YYD3_k127_3245340_50 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071944 - 0.00003926 48.0
YYD3_k127_3245340_51 - - - - 0.0000879 45.0
YYD3_k127_3245340_6 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 4.915e-248 782.0
YYD3_k127_3245340_7 Participates in both transcription termination and antitermination K02600 - - 4.549e-216 680.0
YYD3_k127_3245340_8 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 2.409e-202 648.0
YYD3_k127_3245340_9 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009179 528.0
YYD3_k127_3245669_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 547.0
YYD3_k127_3245669_1 TonB-dependent receptor plug K02014 - - 0.000000000000000000000000000000000000000000000000000000000008714 215.0
YYD3_k127_3245669_2 cytochrome - - - 0.00000000000000000000000000000000000000001588 166.0
YYD3_k127_3245669_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000366 148.0
YYD3_k127_3245669_4 Protein required for attachment to host cells - - - 0.000000000000000002264 91.0
YYD3_k127_3253436_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.107e-284 887.0
YYD3_k127_3253436_1 Catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time K02337 - 2.7.7.7 3.893e-213 679.0
YYD3_k127_3253436_10 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001498 254.0
YYD3_k127_3253436_11 response regulator K07715 - - 0.0000000000000000000000000000000000000000000000001298 186.0
YYD3_k127_3253436_12 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000001881 180.0
YYD3_k127_3253436_13 Helix-turn-helix domain protein - - - 0.000000000000000000000000000000000000000000000007727 186.0
YYD3_k127_3253436_14 Type IV pilus biogenesis stability protein PilW - - - 0.00000000000000000000000000000006779 136.0
YYD3_k127_3253436_15 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000000000009762 97.0
YYD3_k127_3253436_16 FAD binding domain K09828 - 1.3.1.72 0.00000000000002775 84.0
YYD3_k127_3253436_2 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 572.0
YYD3_k127_3253436_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006158 546.0
YYD3_k127_3253436_4 Protein of unknown function (DUF2817) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 430.0
YYD3_k127_3253436_5 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 391.0
YYD3_k127_3253436_6 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 373.0
YYD3_k127_3253436_7 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 348.0
YYD3_k127_3253436_8 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009845 327.0
YYD3_k127_3253436_9 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007877 275.0
YYD3_k127_3267179_0 AMP-binding enzyme K12508 - 6.2.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006147 582.0
YYD3_k127_3267179_1 Belongs to the RtcB family K14415 - 6.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 513.0
YYD3_k127_3267179_10 Metal binding domain of Ada K00567,K10778 - 2.1.1.63 0.000000000000001318 79.0
YYD3_k127_3267179_11 (Hpt) domain - - - 0.0000001142 59.0
YYD3_k127_3267179_2 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 493.0
YYD3_k127_3267179_3 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 488.0
YYD3_k127_3267179_4 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000634 435.0
YYD3_k127_3267179_5 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 414.0
YYD3_k127_3267179_6 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004661 396.0
YYD3_k127_3267179_7 Dehydrogenase E1 component K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006047 344.0
YYD3_k127_3267179_8 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 334.0
YYD3_k127_3267179_9 Dioxygenase - - - 0.0000000000000000000000000000000000000000000000000001899 195.0
YYD3_k127_3313378_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 2.387e-226 711.0
YYD3_k127_3313378_1 PFAM type I phosphodiesterase nucleotide pyrophosphatase K19670 - 3.11.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009401 600.0
YYD3_k127_3313378_2 Phosphonate utilization associated transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000001036 226.0
YYD3_k127_3314134_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.0 1272.0
YYD3_k127_3314134_1 ABC-type Fe3 transport system permease component K02011 - - 2.201e-291 910.0
YYD3_k127_3314134_10 Xylose isomerase K03335 - 4.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 385.0
YYD3_k127_3314134_11 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 379.0
YYD3_k127_3314134_12 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 326.0
YYD3_k127_3314134_13 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005473 291.0
YYD3_k127_3314134_14 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001503 284.0
YYD3_k127_3314134_15 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002132 276.0
YYD3_k127_3314134_16 PFAM Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005408 276.0
YYD3_k127_3314134_17 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000001169 268.0
YYD3_k127_3314134_18 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000001684 185.0
YYD3_k127_3314134_19 Phasin protein - - - 0.000000000000000000000000000000000000000000000002136 178.0
YYD3_k127_3314134_2 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.319e-203 642.0
YYD3_k127_3314134_20 Etoposide-induced protein 2.4 (EI24) - - - 0.00000000000000000000000000000000000000004557 161.0
YYD3_k127_3314134_21 Ribosomal L28 family K02902 - - 0.00000000000000000000000000001569 120.0
YYD3_k127_3314134_22 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000002456 95.0
YYD3_k127_3314134_23 Protein of unknown function (DUF3108) - - - 0.00000000007122 72.0
YYD3_k127_3314134_3 PFAM fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 542.0
YYD3_k127_3314134_4 ABC-type Fe3 transport system, periplasmic component K02012,K11081 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 528.0
YYD3_k127_3314134_5 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 482.0
YYD3_k127_3314134_6 Belongs to the TPP enzyme family K03336 - 3.7.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 448.0
YYD3_k127_3314134_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 432.0
YYD3_k127_3314134_8 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 419.0
YYD3_k127_3314134_9 Glutaredoxin-family domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 404.0
YYD3_k127_3315748_0 Periplasmic binding protein domain K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 402.0
YYD3_k127_3315748_1 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 396.0
YYD3_k127_3315748_2 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001741 286.0
YYD3_k127_3315748_3 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001251 281.0
YYD3_k127_3315748_4 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000002941 234.0
YYD3_k127_3315748_5 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.000000000000000000000003424 105.0
YYD3_k127_3362431_0 ammonium transporter K03320 - - 2.948e-210 663.0
YYD3_k127_3362431_1 Mg chelatase subunit ChlI K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 514.0
YYD3_k127_3362431_2 Bacterial protein of unknown function (Gcw_chp) - - - 0.000000000000000000000000000000000000000000000000000000000005371 218.0
YYD3_k127_3362431_3 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000000000000005565 199.0
YYD3_k127_3362431_4 Membrane fusogenic activity K09806 - - 0.000000000000000004298 87.0
YYD3_k127_3362431_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000001279 62.0
YYD3_k127_3379039_0 Acetyl-coenzyme A synthetase N-terminus K01908 - 6.2.1.17 2.205e-290 902.0
YYD3_k127_3379039_1 FAD binding domain K00480 - 1.14.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 525.0
YYD3_k127_3379039_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 284.0
YYD3_k127_3379039_3 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000001121 237.0
YYD3_k127_3379039_4 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000001136 210.0
YYD3_k127_3379039_5 Haem-degrading K11477 - - 0.000000000000000000000000000000000009809 143.0
YYD3_k127_338962_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 382.0
YYD3_k127_338962_1 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 367.0
YYD3_k127_338962_2 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 326.0
YYD3_k127_338962_3 Binding-protein-dependent transport system inner membrane component K05773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 291.0
YYD3_k127_338962_4 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009311 276.0
YYD3_k127_338962_5 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000008423 256.0
YYD3_k127_338962_6 ABC transporter K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000000796 250.0
YYD3_k127_338962_7 Transcriptional regulator of molybdate metabolism, LysR family protein - - - 0.000000000000000000000000000000000000000000000000000000000000007014 228.0
YYD3_k127_3411853_0 Pfam:KaiC K08482 - - 1.148e-221 700.0
YYD3_k127_3411853_1 KaiB K08481 - - 0.000000000000000000000000000000000000008092 146.0
YYD3_k127_3411853_2 Histidine kinase - - - 0.00000001294 62.0
YYD3_k127_3411853_3 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.00005644 45.0
YYD3_k127_343654_0 GTP-binding protein K06207 - - 9.55e-210 668.0
YYD3_k127_343654_1 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 535.0
YYD3_k127_343654_2 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 451.0
YYD3_k127_343654_3 Belongs to the class I fructose-bisphosphate aldolase family K01623 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005864 400.0
YYD3_k127_343654_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 327.0
YYD3_k127_343654_5 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000001783 201.0
YYD3_k127_343654_6 D-galactarate dehydratase / Altronate hydrolase, C terminus K16846 - 4.4.1.24 0.000000000000000000000000000000000000000000000005319 173.0
YYD3_k127_343654_7 SAF K16845 - 4.4.1.24 0.0000000000000000000000000000000000000001093 151.0
YYD3_k127_343654_8 PFAM amine oxidase - - - 0.000000000000007886 81.0
YYD3_k127_3451655_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 1.76e-205 648.0
YYD3_k127_3451655_1 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 2.65e-196 627.0
YYD3_k127_3451655_2 Belongs to the thiolase family K00626 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 592.0
YYD3_k127_3451655_3 PFAM Short-chain dehydrogenase reductase SDR K00023 - 1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 400.0
YYD3_k127_3451655_4 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 328.0
YYD3_k127_3451655_5 synthesis repressor, PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000789 250.0
YYD3_k127_3451655_6 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000005874 242.0
YYD3_k127_3451655_7 ZIP Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000000009426 183.0
YYD3_k127_3459630_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 527.0
YYD3_k127_3459630_1 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 392.0
YYD3_k127_3459630_2 RecA-superfamily ATPases implicated in signal transduction K08482 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006039 312.0
YYD3_k127_3459630_3 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003524 254.0
YYD3_k127_3459630_4 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000002025 201.0
YYD3_k127_3459630_5 (Lipo)protein - - - 0.00000000000004949 78.0
YYD3_k127_3463376_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009817 564.0
YYD3_k127_3463376_1 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007811 501.0
YYD3_k127_3463376_2 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002061 283.0
YYD3_k127_3463376_3 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000189 218.0
YYD3_k127_3463376_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000001925 206.0
YYD3_k127_3463376_5 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000000000000000000435 183.0
YYD3_k127_3463376_6 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.00000000000000000000000000001759 126.0
YYD3_k127_3463376_7 protein involved in tolerance to divalent cations K03926 - - 0.0000000000000000005422 86.0
YYD3_k127_3463376_8 cytochrome - GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000312 77.0
YYD3_k127_3466810_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 3.916e-301 932.0
YYD3_k127_3466810_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 587.0
YYD3_k127_3466810_10 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008897,GO:0009058,GO:0016740,GO:0016772,GO:0016780,GO:0044238,GO:0071704,GO:1901576 2.7.8.7 0.00000000000000000000000000001321 125.0
YYD3_k127_3466810_11 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000005342 78.0
YYD3_k127_3466810_12 Domain of unknown function (DUF4845) - - - 0.00000000002756 68.0
YYD3_k127_3466810_13 Glutaredoxin-like domain (DUF836) - - - 0.0000000001631 65.0
YYD3_k127_3466810_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 421.0
YYD3_k127_3466810_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 396.0
YYD3_k127_3466810_4 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 352.0
YYD3_k127_3466810_5 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003389 319.0
YYD3_k127_3466810_6 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004524 300.0
YYD3_k127_3466810_7 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006936 248.0
YYD3_k127_3466810_8 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000001349 192.0
YYD3_k127_3466810_9 negative regulator of sigma E activity K03598 - - 0.0000000000000000000000000000000000000000000000000278 186.0
YYD3_k127_346841_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 1.029e-251 784.0
YYD3_k127_346841_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002035 278.0
YYD3_k127_346841_2 - - - - 0.00000000000000000000000000000000000000000000000486 174.0
YYD3_k127_3473387_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 5.417e-273 856.0
YYD3_k127_3473387_1 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 614.0
YYD3_k127_3473387_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 364.0
YYD3_k127_3473387_3 homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000007163 218.0
YYD3_k127_3473387_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000000000000000003776 213.0
YYD3_k127_3473387_5 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000001893 203.0
YYD3_k127_3473387_6 Uncharacterized protein conserved in bacteria (DUF2237) K09966 - - 0.00000000000000000000000000000000000000000008604 165.0
YYD3_k127_3473387_7 Redoxin K02199 - - 0.000000000000000000000000000000000005742 145.0
YYD3_k127_3473387_8 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00006045 46.0
YYD3_k127_3476414_0 Phospholipase D Active site motif K01115 - 3.1.4.4 6.278e-231 736.0
YYD3_k127_3476414_1 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001147 282.0
YYD3_k127_3476414_2 thiamine-containing compound biosynthetic process K02051,K15553 - - 0.000000000000000000000000000000000000000000000000000000000000001066 230.0
YYD3_k127_3476414_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000001452 218.0
YYD3_k127_3476414_4 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.000000000000000000000000000001338 122.0
YYD3_k127_3476414_5 glutathione transferase activity K00799 - 2.5.1.18 0.000000000000000000000000000009659 125.0
YYD3_k127_3476414_6 COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component - - - 0.000000000000000000000000001884 115.0
YYD3_k127_3481930_0 AMP-binding enzyme K12508 - 6.2.1.34 4.36e-222 711.0
YYD3_k127_3481930_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 591.0
YYD3_k127_3481930_2 mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 292.0
YYD3_k127_3481930_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003761 286.0
YYD3_k127_3481930_4 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000431 259.0
YYD3_k127_3481930_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000000001405 213.0
YYD3_k127_3481930_6 - - - - 0.0000000000000000000000000000000000000000157 161.0
YYD3_k127_3481930_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000004953 157.0
YYD3_k127_3481930_8 Belongs to the BolA IbaG family K05527 - - 0.000000000000002728 78.0
YYD3_k127_3481930_9 2-Nitropropane dioxygenase - - - 0.0000000001016 71.0
YYD3_k127_3490073_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 4.584e-209 670.0
YYD3_k127_3490073_1 MerR, DNA binding K13639 - - 0.0000000000000000000000000000000000000000000000000000000000000000001842 231.0
YYD3_k127_3490073_2 Protein of unknown function (DUF2938) - - - 0.000000000000000000000000000000000000000000000000000000000000001248 222.0
YYD3_k127_3490073_3 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000163 189.0
YYD3_k127_3490073_4 Cupin domain K21700 - - 0.00000000000000000000000000007706 121.0
YYD3_k127_3490073_5 Glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.0000000000000000000000000001873 121.0
YYD3_k127_350680_0 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 9.6e-220 691.0
YYD3_k127_350680_1 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 415.0
YYD3_k127_350680_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000008495 207.0
YYD3_k127_3516217_0 Histidine Phosphotransfer domain K02487,K06596 - - 5.194e-310 1006.0
YYD3_k127_3516217_1 Methyl-accepting chemotaxis protein K02660 - - 9.065e-195 628.0
YYD3_k127_3516217_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 413.0
YYD3_k127_3516217_3 Receptor family ligand binding region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008076 398.0
YYD3_k127_3516217_4 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 372.0
YYD3_k127_3516217_5 6-phosphogluconolactonase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 329.0
YYD3_k127_3516217_6 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000001038 222.0
YYD3_k127_3516217_7 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000008724 203.0
YYD3_k127_3516217_8 response regulator receiver K02658 - - 0.00000000000000000000000000000000000000000000001674 173.0
YYD3_k127_3516217_9 PFAM CheW domain protein K02659 - - 0.0000000000000000000000000000000000000003095 154.0
YYD3_k127_3517272_0 Urea ABC transporter ATP-binding protein urtd K11962 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 371.0
YYD3_k127_3517272_1 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.000000000000000000000000000000000000000000000000000000000000000499 222.0
YYD3_k127_3517272_2 ABC transporter, ATP-binding protein K11963 - - 0.0000000009356 60.0
YYD3_k127_3517272_3 AAA domain (dynein-related subfamily) - - - 0.000000009629 63.0
YYD3_k127_3522770_0 Carbamoyltransferase K00612 - - 2.012e-307 952.0
YYD3_k127_3522770_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000722 295.0
YYD3_k127_3522770_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001558 281.0
YYD3_k127_3522770_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000005704 226.0
YYD3_k127_3522770_4 - - - - 0.0000000000000000000000000000000001437 142.0
YYD3_k127_3522770_5 - - - - 0.000000000000001424 77.0
YYD3_k127_3522770_6 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000002814 74.0
YYD3_k127_3522912_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 4.071e-258 801.0
YYD3_k127_3522912_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009495 461.0
YYD3_k127_3522912_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000002661 186.0
YYD3_k127_3522912_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000002062 165.0
YYD3_k127_3522912_4 Belongs to the peptidase S1B family - - - 0.0000000000000000003036 94.0
YYD3_k127_3522912_5 Carbonic anhydrase K01673 - 4.2.1.1 0.000000000000009833 81.0
YYD3_k127_3533738_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007876 415.0
YYD3_k127_3533738_1 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 352.0
YYD3_k127_3533738_10 - - - - 0.000002041 51.0
YYD3_k127_3533738_2 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000000001126 173.0
YYD3_k127_3533738_3 DoxX K15977 - - 0.00000000000000000000000000000000000707 141.0
YYD3_k127_3533738_4 overlaps another CDS with the same product name K07240 - - 0.0000000000000000000000000000002905 134.0
YYD3_k127_3533738_5 - - - - 0.000000000000000000000000006816 117.0
YYD3_k127_3533738_6 Belongs to the 'phage' integrase family - - - 0.0000000000000001723 84.0
YYD3_k127_3533738_7 Antibiotic biosynthesis monooxygenase - - - 0.00000000004876 73.0
YYD3_k127_3550300_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 2.943e-216 684.0
YYD3_k127_3550300_1 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 606.0
YYD3_k127_3550300_2 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 441.0
YYD3_k127_3550300_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007169 366.0
YYD3_k127_3550300_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 345.0
YYD3_k127_3550300_5 enzyme of heme biosynthesis K02496,K13543 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009331 281.0
YYD3_k127_3550300_6 enzyme of heme biosynthesis K02498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003994 272.0
YYD3_k127_3550300_7 synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000002063 199.0
YYD3_k127_3550300_8 Belongs to the transcriptional regulatory Fis family K03557 - - 0.0000000000000000000003872 97.0
YYD3_k127_356267_0 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008667 329.0
YYD3_k127_356267_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001879 264.0
YYD3_k127_356267_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000002509 223.0
YYD3_k127_356267_3 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000002706 193.0
YYD3_k127_356267_4 OmpA family K02557 - - 0.00000000000000000000000000000000000000000004342 171.0
YYD3_k127_356267_5 regulatory protein TetR - - - 0.000000000000000006792 91.0
YYD3_k127_356267_6 Sarcosine oxidase, gamma subunit K00305 - 1.5.3.1 0.00000000002269 66.0
YYD3_k127_3594840_0 Pfam Sulfatase K01133 - 3.1.6.6 1.041e-231 726.0
YYD3_k127_3594840_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 329.0
YYD3_k127_3594840_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 345.0
YYD3_k127_3594840_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007667 317.0
YYD3_k127_3594840_4 Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 302.0
YYD3_k127_3594840_5 Bacterial regulatory proteins, gntR family - - - 0.000000000000000000000000000000000000000000000000000000000004396 218.0
YYD3_k127_3594840_6 PFAM (2R)-phospho-3-sulfolactate synthase ComA K08097 - 4.4.1.19 0.000000000000000000000006545 117.0
YYD3_k127_3594840_7 Transcriptional regulator, LysR - - - 0.0003328 44.0
YYD3_k127_3606750_0 Catalytic subunit of the nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC. Essential function for nitrate assimilation and may have a role in anaerobic metabolism K02567 - - 0.0 1352.0
YYD3_k127_3606750_1 NapC/NirT cytochrome c family, N-terminal region K02569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 329.0
YYD3_k127_3606750_2 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.00000000000000000000000000000000000000000008311 171.0
YYD3_k127_3606750_3 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000006159 151.0
YYD3_k127_3606750_4 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000006798 132.0
YYD3_k127_3606750_5 Universal stress protein - - - 0.00000000000000000000000000002185 130.0
YYD3_k127_3606750_6 Rubrerythrin - - - 0.000000000000000004231 92.0
YYD3_k127_3606750_7 BON domain - - - 0.000000000000003308 80.0
YYD3_k127_3606750_8 - - - - 0.000008192 54.0
YYD3_k127_3606750_9 periplasmic nitrate reductase K02571 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0005764 50.0
YYD3_k127_3635231_0 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 0.0 2019.0
YYD3_k127_3635231_1 Respiratory nitrate reductase beta C-terminal K00371,K17051 - 1.7.5.1 1.246e-285 891.0
YYD3_k127_3635231_2 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 524.0
YYD3_k127_3635231_3 Nitrate reductase K00374 - 1.7.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 293.0
YYD3_k127_3635231_4 Nitrate reductase, delta subunit K00373 - - 0.000000000000000000000000000000000000000000000297 177.0
YYD3_k127_3635231_5 - - - - 0.0000000000000000000000000000000000000003665 156.0
YYD3_k127_366473_0 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 2.413e-271 838.0
YYD3_k127_366473_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 553.0
YYD3_k127_366473_2 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007563 312.0
YYD3_k127_366473_3 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003502 318.0
YYD3_k127_366473_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 316.0
YYD3_k127_366473_5 Cbb3-type cytochrome oxidase K00407 - - 0.0009594 44.0
YYD3_k127_3715795_0 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 1.157e-278 866.0
YYD3_k127_3715795_1 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 323.0
YYD3_k127_3715795_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 299.0
YYD3_k127_3715795_3 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000001253 231.0
YYD3_k127_3715795_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000001001 205.0
YYD3_k127_374220_0 Tripartite tricarboxylate transporter TctA family - - - 4.772e-211 666.0
YYD3_k127_374220_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 590.0
YYD3_k127_374220_2 Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source K05396,K17950 GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016829,GO:0016846,GO:0019752,GO:0019842,GO:0030170,GO:0034011,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575 4.4.1.15,4.4.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 317.0
YYD3_k127_374220_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 316.0
YYD3_k127_374220_4 COG2206 HD-GYP domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006802 292.0
YYD3_k127_374220_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000003064 166.0
YYD3_k127_374220_6 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000001964 99.0
YYD3_k127_374220_7 - - - - 0.000000001395 68.0
YYD3_k127_3753432_0 Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family K03455 - - 1.497e-198 637.0
YYD3_k127_3753432_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008362 558.0
YYD3_k127_3753432_10 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000000005279 124.0
YYD3_k127_3753432_11 PFAM peptidase S16 lon domain protein K07157 - - 0.00000003783 65.0
YYD3_k127_3753432_12 Involved in the tonB-independent uptake of proteins - - - 0.00002077 52.0
YYD3_k127_3753432_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005899 398.0
YYD3_k127_3753432_3 Lipopolysaccharide export system ATP-binding protein K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 372.0
YYD3_k127_3753432_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 322.0
YYD3_k127_3753432_5 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008547 317.0
YYD3_k127_3753432_6 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.000000000000000000000000000000000000000000000000000000000175 207.0
YYD3_k127_3753432_7 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000002704 184.0
YYD3_k127_3753432_8 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000000008104 148.0
YYD3_k127_3753432_9 ribosomal subunit interface protein K05808 - - 0.00000000000000000000000000000000001227 137.0
YYD3_k127_376256_0 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 445.0
YYD3_k127_376256_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005367 435.0
YYD3_k127_376256_10 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000005518 147.0
YYD3_k127_376256_11 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000004239 142.0
YYD3_k127_376256_2 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 426.0
YYD3_k127_376256_3 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 402.0
YYD3_k127_376256_4 Serine aminopeptidase, S33 K01253,K08253 - 2.7.10.2,3.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 380.0
YYD3_k127_376256_5 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 317.0
YYD3_k127_376256_6 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004852 278.0
YYD3_k127_376256_7 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001139 247.0
YYD3_k127_376256_8 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000009852 233.0
YYD3_k127_376256_9 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000006128 151.0
YYD3_k127_3765628_0 ABC transporter transmembrane region K18893 - - 6.205e-232 732.0
YYD3_k127_3765628_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001231 271.0
YYD3_k127_3765628_2 - - - - 0.0000000000000000000000000000000002246 145.0
YYD3_k127_3765628_3 Cation transport regulator - - - 0.000000000504 67.0
YYD3_k127_3786316_0 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 367.0
YYD3_k127_3786316_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 344.0
YYD3_k127_3786316_2 Peptidase family M28 K02083 - 3.5.3.9 0.00000000000000000000000000000000000000000000003006 172.0
YYD3_k127_3786316_3 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.00000000000000000000000000000000000001435 148.0
YYD3_k127_3786316_4 Polysaccharide deacetylase K00365,K01452 GO:0000003,GO:0000272,GO:0003006,GO:0005575,GO:0005618,GO:0005619,GO:0005623,GO:0005631,GO:0005975,GO:0005976,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006037,GO:0006039,GO:0006040,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009272,GO:0009277,GO:0009653,GO:0009987,GO:0010383,GO:0010927,GO:0016043,GO:0016052,GO:0016998,GO:0017144,GO:0019953,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030437,GO:0030476,GO:0031160,GO:0031505,GO:0032502,GO:0032505,GO:0032989,GO:0034218,GO:0034232,GO:0034293,GO:0042244,GO:0042546,GO:0042737,GO:0043170,GO:0043934,GO:0043935,GO:0044036,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044277,GO:0044426,GO:0044462,GO:0044464,GO:0044703,GO:0045229,GO:0046348,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051321,GO:0051704,GO:0070590,GO:0070591,GO:0070726,GO:0070910,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071853,GO:0071854,GO:0071940,GO:0071944,GO:0071966,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903046 1.7.3.3,3.5.1.41 0.0000000000000000000000000000000000002303 152.0
YYD3_k127_3786316_5 HIUase/Transthyretin family - - - 0.0000000000000000000000000000000001883 135.0
YYD3_k127_3802658_0 Radical SAM K01012 - 2.8.1.6 2.142e-201 649.0
YYD3_k127_3802658_1 Outer membrane protein transport protein (OMPP1/FadL/TodX) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 511.0
YYD3_k127_3802658_10 GMP synthase (glutamine-hydrolyzing) activity - - - 0.000000000000000000000000000000000000000000000000000000000002055 231.0
YYD3_k127_3802658_11 Sulfurtransferase TusA K04085 - - 0.0000000000000000000000000000002129 125.0
YYD3_k127_3802658_12 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000001474 80.0
YYD3_k127_3802658_2 Radical SAM K09711 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 485.0
YYD3_k127_3802658_3 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000934 468.0
YYD3_k127_3802658_4 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 467.0
YYD3_k127_3802658_5 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 450.0
YYD3_k127_3802658_6 geranylgeranyl reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003067 292.0
YYD3_k127_3802658_7 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009762 265.0
YYD3_k127_3802658_8 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008413 245.0
YYD3_k127_3802658_9 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000135 225.0
YYD3_k127_3829028_0 ATPase (AAA K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 333.0
YYD3_k127_3829028_1 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 336.0
YYD3_k127_3829028_2 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004081 327.0
YYD3_k127_3829028_3 Thiamine monophosphate synthase K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000507 322.0
YYD3_k127_3829028_4 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000006741 216.0
YYD3_k127_3829028_5 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000001935 147.0
YYD3_k127_3829028_6 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000001162 72.0
YYD3_k127_3833366_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 552.0
YYD3_k127_3833366_1 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 377.0
YYD3_k127_3833366_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 340.0
YYD3_k127_3833366_3 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007764 328.0
YYD3_k127_3833366_4 Phosphoglycolate phosphatase K22292 - 3.1.3.105 0.000000000000000000000000000000000000000000000000000000000000000000001854 241.0
YYD3_k127_3833366_5 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000000000002694 188.0
YYD3_k127_3833366_6 Aminoacyl-tRNA editing domain K19055 - - 0.000000000000000000000000000000000000002003 152.0
YYD3_k127_3833366_7 OmpA family K03286 - - 0.00000000000000000000000000007302 123.0
YYD3_k127_3834677_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009906 522.0
YYD3_k127_3834677_1 Protein of unknown function (DUF962) - - - 0.00000000000000000000000000000000000000002353 154.0
YYD3_k127_3834677_2 MscS Mechanosensitive ion channel - - - 0.000000000000000000000000000000002341 139.0
YYD3_k127_3834677_3 Histidine kinase A domain protein - - - 0.000000000000000000000000004075 116.0
YYD3_k127_3834677_4 Histidine kinase A domain protein - - - 0.00000000000001214 85.0
YYD3_k127_3835764_0 Heat shock 70 kDa protein K04043 - - 2.767e-321 993.0
YYD3_k127_3835764_1 Insecticidal toxin complex protein TcaC - - - 1.868e-227 750.0
YYD3_k127_3835764_2 Diguanylate cyclase - - - 3.989e-195 630.0
YYD3_k127_3835764_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 571.0
YYD3_k127_3835764_4 AsmA family K07289 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 384.0
YYD3_k127_3835764_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000002564 152.0
YYD3_k127_3835764_6 alginic acid biosynthetic process K12287 - - 0.00000000000000000000000000000000000199 146.0
YYD3_k127_3835764_7 polyamine oxidase 5 K12259 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016647,GO:0040034,GO:0044424,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055114,GO:0065007,GO:1990534 1.5.3.16 0.0002152 45.0
YYD3_k127_3838972_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1042.0
YYD3_k127_3838972_1 COG0017 Aspartyl asparaginyl-tRNA synthetases K01893 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 8.927e-214 672.0
YYD3_k127_3838972_2 Peptidase family M20/M25/M40 - - - 2.841e-206 657.0
YYD3_k127_3838972_3 PFAM aminotransferase class I and II K00832 - 2.6.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004877 507.0
YYD3_k127_3838972_4 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000004953 189.0
YYD3_k127_3838972_5 Low molecular weight phosphotyrosine protein phosphatase K01104 GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576 3.1.3.48 0.000000000000000000000000000000000000000003381 175.0
YYD3_k127_3838972_6 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.000000000000000000000000000000000001322 154.0
YYD3_k127_3838972_7 Cell Wall Hydrolase - - - 0.000000000000000000000000003196 118.0
YYD3_k127_3843762_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005415 421.0
YYD3_k127_3843762_1 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 308.0
YYD3_k127_3843762_2 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000003387 235.0
YYD3_k127_3843762_3 Globin - - - 0.0000000000000000000000000000000000000000008662 164.0
YYD3_k127_3843762_4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000001377 157.0
YYD3_k127_3856309_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 7.092e-256 797.0
YYD3_k127_3856309_1 Bacterial transcriptional activator domain - - - 2.221e-198 655.0
YYD3_k127_3856309_10 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000144 111.0
YYD3_k127_3856309_11 - - - - 0.00000000000000000000000000849 116.0
YYD3_k127_3856309_12 helix_turn_helix, Lux Regulon - - - 0.00000002798 64.0
YYD3_k127_3856309_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003347 537.0
YYD3_k127_3856309_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 412.0
YYD3_k127_3856309_4 IPP transferase K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 359.0
YYD3_k127_3856309_5 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 341.0
YYD3_k127_3856309_6 dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 316.0
YYD3_k127_3856309_7 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009906 256.0
YYD3_k127_3856309_8 Shikimate kinase K00851 - 2.7.1.12 0.000000000000000000000000000000000000000431 165.0
YYD3_k127_3856309_9 - - - - 0.00000000000000000000000000001205 119.0
YYD3_k127_38592_0 Glucose / Sorbosone dehydrogenase - - - 4.835e-200 630.0
YYD3_k127_38592_1 PFAM Rieske 2Fe-2S domain protein K18068 - 1.14.12.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007707 513.0
YYD3_k127_38592_2 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009417 419.0
YYD3_k127_38592_3 MltA-interacting protein MipA K07274 - - 0.000000000000000000000000000000000000000000000000000007328 199.0
YYD3_k127_3871838_0 glucose sorbosone K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 531.0
YYD3_k127_3871838_1 4,5-dihydroxyphthalate decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004624 441.0
YYD3_k127_3871838_2 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004755 282.0
YYD3_k127_3871838_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002241 282.0
YYD3_k127_3871838_4 ATP-independent chaperone mediated protein folding - - - 0.00000000000000000002094 97.0
YYD3_k127_3871838_5 phosphorelay signal transduction system K14987 - - 0.00000000000000001279 87.0
YYD3_k127_3883194_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 431.0
YYD3_k127_3883194_1 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001392 250.0
YYD3_k127_3883194_2 Tetratricopeptide repeat - - - 0.00000000000000000000000008406 108.0
YYD3_k127_3897977_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 3.388e-245 766.0
YYD3_k127_3897977_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 6.844e-224 711.0
YYD3_k127_3897977_10 Putative zinc- or iron-chelating domain K06940 - - 0.0000000000000000000000000000000000001725 144.0
YYD3_k127_3897977_11 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000002505 145.0
YYD3_k127_3897977_12 Thioesterase superfamily - - - 0.00000000000000000000000000000007367 130.0
YYD3_k127_3897977_2 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.218e-206 649.0
YYD3_k127_3897977_3 Zinc-binding dehydrogenase K12957,K13953,K19961 - 1.1.1.1,1.1.1.258 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 382.0
YYD3_k127_3897977_4 zinc protease protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008298 301.0
YYD3_k127_3897977_5 alpha/beta hydrolase fold K01066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001336 279.0
YYD3_k127_3897977_6 CoA-binding protein K06929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000123 240.0
YYD3_k127_3897977_7 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000003699 246.0
YYD3_k127_3897977_8 Glutathione S-Transferase K00799 GO:0003674,GO:0003824,GO:0004364,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016740,GO:0016765,GO:0030611,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0055114 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000001273 242.0
YYD3_k127_3897977_9 NIPSNAP - - - 0.0000000000000000000000000000000000000000001871 160.0
YYD3_k127_3927110_0 asparagine K01953 - 6.3.5.4 4.768e-237 748.0
YYD3_k127_3927110_1 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 420.0
YYD3_k127_3927110_2 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 384.0
YYD3_k127_3927110_3 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002507 357.0
YYD3_k127_3927110_4 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 331.0
YYD3_k127_3927110_5 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 291.0
YYD3_k127_3927110_6 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001813 256.0
YYD3_k127_3927110_7 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000004426 209.0
YYD3_k127_3927110_8 TIGRFAM type I secretion outer membrane protein, TolC family K12340 - - 0.00000000000005343 72.0
YYD3_k127_3927110_9 Asparagine synthase K01953 - 6.3.5.4 0.000002104 50.0
YYD3_k127_3940893_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 447.0
YYD3_k127_3940893_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 438.0
YYD3_k127_3940893_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003617 282.0
YYD3_k127_3940893_3 COGs COG4925 conserved - - - 0.000000000000111 74.0
YYD3_k127_4029696_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 336.0
YYD3_k127_4029696_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001284 256.0
YYD3_k127_4029696_2 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000004871 124.0
YYD3_k127_403265_0 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004044 343.0
YYD3_k127_403265_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 305.0
YYD3_k127_403265_2 Belongs to the HpcH HpaI aldolase family K00979,K02510 - 2.7.7.38,4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004068 282.0
YYD3_k127_403265_3 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000001731 254.0
YYD3_k127_403265_4 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000009297 215.0
YYD3_k127_403265_5 Domain of unknown function (DUF1932) K00020 - 1.1.1.31 0.00000000000000000000000000000000006357 145.0
YYD3_k127_4033546_0 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000192 272.0
YYD3_k127_4033546_1 Domain of unknown function (DUF4396) - - - 0.00000000000000000000000000000000000000000000000000000000000000002485 231.0
YYD3_k127_4033546_2 ChrR Cupin-like domain - - - 0.00000000000000000008075 88.0
YYD3_k127_4044135_0 PFAM cytochrome bd ubiquinol oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 560.0
YYD3_k127_4044135_1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007891 522.0
YYD3_k127_4044135_2 Phosphoenolpyruvate phosphomutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 356.0
YYD3_k127_4044135_3 cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000575 346.0
YYD3_k127_4044135_4 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000001491 150.0
YYD3_k127_4054427_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895,K01907 - 6.2.1.1,6.2.1.16 5.977e-291 906.0
YYD3_k127_4054427_1 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.769e-274 852.0
YYD3_k127_4054427_2 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 3.921e-247 772.0
YYD3_k127_4054427_3 Histidine ammonia-lyase K01745 - 4.3.1.3 4.681e-195 622.0
YYD3_k127_4054427_4 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 486.0
YYD3_k127_4054427_5 Amidohydrolase family K05603 - 3.5.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007015 439.0
YYD3_k127_4054427_6 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 342.0
YYD3_k127_4054427_7 Thioesterase superfamily K07107 - - 0.00000000000000000000000000000000000007309 145.0
YYD3_k127_4070179_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 5.442e-196 623.0
YYD3_k127_4070179_1 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 491.0
YYD3_k127_4070179_2 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009954 477.0
YYD3_k127_4070179_3 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 387.0
YYD3_k127_4070179_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 381.0
YYD3_k127_4070179_5 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006267 278.0
YYD3_k127_4070179_6 Integral membrane protein TerC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003188 273.0
YYD3_k127_4070179_7 Belongs to the universal stress protein A family - - - 0.0000000000000000642 89.0
YYD3_k127_4070179_8 Universal stress protein family - - - 0.000000007029 68.0
YYD3_k127_4081951_0 Amidohydrolase K07045 - - 1.238e-206 662.0
YYD3_k127_4081951_1 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 399.0
YYD3_k127_4081951_2 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 372.0
YYD3_k127_4081951_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009983 293.0
YYD3_k127_4081951_4 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003566 263.0
YYD3_k127_4081951_5 PKD domain - - - 0.0000000000000000000000000000007275 141.0
YYD3_k127_4081951_6 guanyl-nucleotide exchange factor activity K01387,K12287 - 3.4.24.3 0.000003942 60.0
YYD3_k127_4089647_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 6.362e-286 891.0
YYD3_k127_4089647_1 COG1132 ABC-type multidrug transport system, ATPase and permease components K06147 - - 4.254e-201 642.0
YYD3_k127_4089647_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000065 593.0
YYD3_k127_4089647_3 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 521.0
YYD3_k127_4089647_4 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.0000000000000000000000005963 113.0
YYD3_k127_4096656_0 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000007004 237.0
YYD3_k127_4096656_1 Helix-turn-helix XRE-family like proteins K18831 - - 0.00000000000000000000000000000000000000000000000006331 185.0
YYD3_k127_4096656_2 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system K19166 - - 0.00000000000000000000000000000000000008235 150.0
YYD3_k127_4096656_3 PIN domain - - - 0.00000000000000000000000000003423 125.0
YYD3_k127_4096656_4 Helix-turn-helix domain - - - 0.00000000000000000001405 94.0
YYD3_k127_4096656_5 Protein of unknown function (DUF2283) - - - 0.00000000000000009077 83.0
YYD3_k127_409676_0 ATP-grasp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 393.0
YYD3_k127_409676_1 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000005552 138.0
YYD3_k127_409676_2 Type II secretory pathway, pseudopilin - - - 0.000000000000000000000000000000002271 139.0
YYD3_k127_409676_3 WbqC-like protein family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000904 119.0
YYD3_k127_409676_4 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000003559 122.0
YYD3_k127_409676_5 O-methyltransferase activity - - - 0.0000000000000000000009449 98.0
YYD3_k127_409676_6 A domain family that is part of the cupin metalloenzyme superfamily. - - - 0.00000000000000000012 102.0
YYD3_k127_409676_7 phosphoprotein phosphatase activity - - - 0.0000000000000008611 90.0
YYD3_k127_409676_8 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000003608 69.0
YYD3_k127_4110001_0 Fumarate reductase flavoprotein C-term - - - 1.125e-241 760.0
YYD3_k127_4110001_1 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 344.0
YYD3_k127_4110001_2 Universal stress protein - - - 0.000000000000000000000000000000009154 132.0
YYD3_k127_4110001_3 Universal stress protein - - - 0.000000000000000000000000000001539 130.0
YYD3_k127_4110001_4 Fumarate reductase subunit C - - - 0.000000000000000000000000005028 121.0
YYD3_k127_4110001_5 Hemerythrin HHE cation binding domain - - - 0.00000000000000000009413 91.0
YYD3_k127_4110001_6 Fumarate reductase subunit D - - - 0.00001542 50.0
YYD3_k127_4110121_0 AAA domain (Cdc48 subfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 490.0
YYD3_k127_4110121_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005064 273.0
YYD3_k127_4110121_2 DinB family - - - 0.00000000000000000000000000000000000000000000000001663 184.0
YYD3_k127_4110121_3 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000000000007776 172.0
YYD3_k127_4110121_4 Cytochrome c - - - 0.00000000000000000000000008827 111.0
YYD3_k127_4110121_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000001317 113.0
YYD3_k127_4110121_6 Belongs to the UPF0301 (AlgH) family K07735 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000002333 66.0
YYD3_k127_4111060_0 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006935 559.0
YYD3_k127_4111060_1 PFAM EAL domain, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 479.0
YYD3_k127_4111060_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 321.0
YYD3_k127_4111060_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 307.0
YYD3_k127_4111060_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 294.0
YYD3_k127_4111060_5 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000008758 215.0
YYD3_k127_4111060_6 Cobalamin synthesis protein cobW C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000006881 209.0
YYD3_k127_4111060_7 TonB C terminal K03646 - - 0.00002409 54.0
YYD3_k127_4114686_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 1.063e-206 658.0
YYD3_k127_4114686_1 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000812 162.0
YYD3_k127_4114686_2 Aldehyde dehydrogenase family - - - 0.000000000007 65.0
YYD3_k127_4137298_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 1.307e-310 964.0
YYD3_k127_4137298_1 membrane - - - 0.000000000000000000000000000000002619 130.0
YYD3_k127_4137298_2 - - - - 0.000000000000000000007383 99.0
YYD3_k127_4137298_4 - - - - 0.0001907 45.0
YYD3_k127_4147843_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005653 353.0
YYD3_k127_4147843_1 PFAM intradiol ring-cleavage dioxygenase K04098 - 1.13.11.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005778 294.0
YYD3_k127_4147843_2 META domain K03929 - - 0.000000000000000000000000000000000004828 154.0
YYD3_k127_4147843_3 Cupin domain - - - 0.00000000000000000000000000000000001229 143.0
YYD3_k127_4147843_4 3-Hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.000000000000000000001035 106.0
YYD3_k127_4178971_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 592.0
YYD3_k127_4178971_1 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 579.0
YYD3_k127_4178971_2 Uracil DNA glycosylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007011 280.0
YYD3_k127_4178971_3 alpha beta - - - 0.0000000000000000000000000000000001928 145.0
YYD3_k127_4178971_4 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000001698 136.0
YYD3_k127_4178971_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000004551 55.0
YYD3_k127_425240_0 Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 399.0
YYD3_k127_425240_1 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K00842,K14155 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 345.0
YYD3_k127_425240_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000005804 241.0
YYD3_k127_425240_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000004504 179.0
YYD3_k127_425240_4 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000006149 164.0
YYD3_k127_4284175_0 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 520.0
YYD3_k127_4284175_1 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 480.0
YYD3_k127_428528_0 Protein of unknown function (DUF445) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007154 337.0
YYD3_k127_428528_1 Uncharacterised protein family (UPF0227) K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 289.0
YYD3_k127_428528_10 mandelate racemase muconate lactonizing K20023 - 4.2.1.156,4.2.1.42 0.0004082 44.0
YYD3_k127_428528_2 Belongs to the peptidase S51 family K05995 - 3.4.13.21 0.00000000000000000000000000000000000000000000000000000000000000000000005749 248.0
YYD3_k127_428528_3 binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription K03088 - - 0.000000000000000000000000000000000000000000000000000000000000004406 224.0
YYD3_k127_428528_4 - - - - 0.0000000000000000000000000000000000000000000000000000003025 203.0
YYD3_k127_428528_5 PFAM GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.000000000000000000000000000000000000000000000000000002297 205.0
YYD3_k127_428528_6 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.00000000000000000000000000000000000254 151.0
YYD3_k127_428528_7 Protein of unknown function (DUF3182) - - - 0.000000000000000000000009618 102.0
YYD3_k127_428528_8 UPF0391 membrane protein - - - 0.00000000001345 66.0
YYD3_k127_428528_9 Pyridine nucleotide-disulphide oxidoreductase K05297,K12265 - 1.18.1.1 0.000001487 57.0
YYD3_k127_4319819_0 Membrane-bound lytic murein transglycosylase K08304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 391.0
YYD3_k127_4319819_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009137 372.0
YYD3_k127_4319819_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 338.0
YYD3_k127_4319819_3 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007302 320.0
YYD3_k127_4319819_4 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000000000007614 196.0
YYD3_k127_4319819_5 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.000000000000000000000000000000000000000000000000000001452 202.0
YYD3_k127_4319819_6 helix_turn_helix gluconate operon transcriptional repressor K00375 - - 0.00000000000000000000000002271 111.0
YYD3_k127_4327339_0 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008438 465.0
YYD3_k127_4327339_1 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003902 362.0
YYD3_k127_4327339_2 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 305.0
YYD3_k127_4327339_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 284.0
YYD3_k127_4327339_4 protein involved in tolerance to divalent cations K03926 - - 0.00000000000000000000000000000000002203 136.0
YYD3_k127_4339880_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 510.0
YYD3_k127_4339880_1 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003729 271.0
YYD3_k127_4339880_2 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000007123 206.0
YYD3_k127_4339880_3 NAD synthase K01950 GO:0003674,GO:0003824,GO:0003952,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016020,GO:0016874,GO:0016879,GO:0016880,GO:0016884,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.5.1 0.0000000000000000000000000000000000000000000003816 168.0
YYD3_k127_4339880_4 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000004232 51.0
YYD3_k127_4353200_0 ABC-type dipeptide transport system, periplasmic component K02035 - - 2.249e-227 715.0
YYD3_k127_4353200_1 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 492.0
YYD3_k127_4353200_2 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 478.0
YYD3_k127_4353200_3 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 469.0
YYD3_k127_4353200_4 N-terminal TM domain of oligopeptide transport permease C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008521 425.0
YYD3_k127_4353200_5 ATPases associated with a variety of cellular activities K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 420.0
YYD3_k127_4353200_6 a g-specific adenine glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 357.0
YYD3_k127_4353200_7 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001158 262.0
YYD3_k127_4353200_8 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000001236 164.0
YYD3_k127_4356191_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 541.0
YYD3_k127_4356191_1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 450.0
YYD3_k127_4356191_2 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 404.0
YYD3_k127_4356191_3 NADPH quinone oxidoreductase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006992 278.0
YYD3_k127_4356191_4 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002843 274.0
YYD3_k127_4356191_5 Tautomerase enzyme - - - 0.0000000000000000000000000000000000000000002612 162.0
YYD3_k127_4356191_6 membrane transporter protein K07090 - - 0.00000003771 58.0
YYD3_k127_4356191_7 Protein of unknown function (DUF2917) - - - 0.000355 46.0
YYD3_k127_4358630_0 Divalent cation transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 447.0
YYD3_k127_4358630_1 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 430.0
YYD3_k127_4358630_2 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009412 325.0
YYD3_k127_4358630_3 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 311.0
YYD3_k127_4358630_4 Phospholipase A1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007751 297.0
YYD3_k127_4358630_5 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003484 269.0
YYD3_k127_4358630_6 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000003026 165.0
YYD3_k127_4358630_7 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000211 170.0
YYD3_k127_4358630_8 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000001363 130.0
YYD3_k127_4358630_9 aromatic ring-opening dioxygenase K15777 - - 0.000000000002489 71.0
YYD3_k127_4367444_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 2.538e-220 703.0
YYD3_k127_4367444_1 luxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009286 258.0
YYD3_k127_4367444_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000009376 227.0
YYD3_k127_4367444_3 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000005387 231.0
YYD3_k127_4367444_4 endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000004706 169.0
YYD3_k127_4367444_5 TPR repeat - - - 0.00000000000000000000000001607 115.0
YYD3_k127_4367444_6 helix_turn_helix, Lux Regulon - - - 0.000000001462 64.0
YYD3_k127_4377400_0 SMART alpha amylase catalytic sub domain K05343 - 3.2.1.1,5.4.99.16 0.0 1422.0
YYD3_k127_4377400_1 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 0.0 1221.0
YYD3_k127_4377400_10 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.0000000000000000000000000000000000002065 151.0
YYD3_k127_4377400_11 fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000000000000505 110.0
YYD3_k127_4377400_2 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 5.621e-298 924.0
YYD3_k127_4377400_3 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 8.073e-239 754.0
YYD3_k127_4377400_4 4-alpha-D-((1- 4)-alpha-D-glucano)trehalose trehalohydrolase K00700,K01236 - 2.4.1.18,3.2.1.141 6.458e-201 657.0
YYD3_k127_4377400_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 422.0
YYD3_k127_4377400_6 Belongs to the mandelate racemase muconate lactonizing enzyme family K01684 - 4.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 378.0
YYD3_k127_4377400_7 PFAM Conserved TM helix repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 294.0
YYD3_k127_4377400_8 Hsp33 protein K04083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000264 263.0
YYD3_k127_4377400_9 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000001756 165.0
YYD3_k127_4384924_0 Belongs to the GcvT family K00302 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.5.3.1 7.572e-292 913.0
YYD3_k127_4384924_1 Sarcosine oxidase beta subunit family K00303 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.5.3.1 1.527e-221 702.0
YYD3_k127_4384924_10 Sarcosine oxidase, delta subunit family K00304 - 1.5.3.1 0.00000000000000000000000000000000000005034 143.0
YYD3_k127_4384924_11 ribonuclease BN K07058 - - 0.0000000000003748 81.0
YYD3_k127_4384924_2 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 545.0
YYD3_k127_4384924_3 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 479.0
YYD3_k127_4384924_4 Isochorismatase family K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 380.0
YYD3_k127_4384924_5 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 361.0
YYD3_k127_4384924_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 345.0
YYD3_k127_4384924_7 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 312.0
YYD3_k127_4384924_8 COG0410 ABC-type branched-chain amino acid transport systems ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005852 269.0
YYD3_k127_4384924_9 PFAM 4-vinyl reductase, 4VR - - - 0.00000000000000000000000000000000000000000000000000000001502 204.0
YYD3_k127_4398080_0 transport system fused permease components - - - 0.0 1113.0
YYD3_k127_4398080_1 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007659 523.0
YYD3_k127_4398080_2 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005329 385.0
YYD3_k127_4398080_3 abc transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 315.0
YYD3_k127_4398080_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 286.0
YYD3_k127_4398080_5 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007625 277.0
YYD3_k127_4398080_6 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000001608 205.0
YYD3_k127_4398080_7 SnoaL-like domain K06893 - - 0.000000000000000000000000000000000000000000002929 171.0
YYD3_k127_4398080_8 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000001626 133.0
YYD3_k127_4398080_9 Aminotransferase class-III - - - 0.0000000000000000000000000000004607 123.0
YYD3_k127_4399105_0 alpha beta K07100 - - 0.00000000000000000000000000000000000000000000000000000000000002541 223.0
YYD3_k127_4399105_1 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000000000000003731 200.0
YYD3_k127_4399105_2 YCII-related domain - - - 0.0000000000000000000000000000000000000000000001664 174.0
YYD3_k127_4399105_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.0000000000000000000000000000000000000000001257 163.0
YYD3_k127_4399105_4 YCII-related domain - - - 0.00000000000000000000000000000001377 128.0
YYD3_k127_4399105_5 lactoylglutathione lyase activity - - - 0.0000000000000000000000000004542 120.0
YYD3_k127_4399105_6 Protein of unknown function (DUF2905) - - - 0.0000000000000000000009582 95.0
YYD3_k127_4412374_0 4Fe-4S dicluster domain - - - 1.399e-231 737.0
YYD3_k127_4412374_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 477.0
YYD3_k127_4412374_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 377.0
YYD3_k127_4412374_3 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 368.0
YYD3_k127_4412374_4 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004358 327.0
YYD3_k127_4412374_5 Protein of unknown function (DUF3305) - - - 0.00000000000000000000000000000000000001602 149.0
YYD3_k127_4412374_6 Nitrate reductase delta subunit - - - 0.000000000000000000000000000000000001716 147.0
YYD3_k127_4412374_7 Protein of unknown function (DUF3306) - - - 0.0000000000000000004091 94.0
YYD3_k127_4424393_0 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016043,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901135,GO:1901576 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008658 474.0
YYD3_k127_4424393_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004323 446.0
YYD3_k127_4424393_2 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 317.0
YYD3_k127_4424393_3 SWI complex, BAF60b domains - - - 0.0000000000000000000000000000000001367 136.0
YYD3_k127_4424393_4 major facilitator superfamily - - - 0.0000004287 53.0
YYD3_k127_4428728_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 3.287e-286 890.0
YYD3_k127_4428728_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 4.525e-209 658.0
YYD3_k127_4428728_10 Belongs to the ompA family K03286 - - 0.0000000000000000000000003521 117.0
YYD3_k127_4428728_11 Ferredoxin 2Fe-2S type, ISC system K04755 - - 0.000000000000004534 79.0
YYD3_k127_4428728_2 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 301.0
YYD3_k127_4428728_3 TIGRFAM Serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 293.0
YYD3_k127_4428728_4 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000001836 256.0
YYD3_k127_4428728_5 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000004103 235.0
YYD3_k127_4428728_6 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly K13643 - - 0.00000000000000000000000000000000000000000000000000000000000000002697 226.0
YYD3_k127_4428728_7 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000008069 206.0
YYD3_k127_4428728_8 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000000000000000004112 190.0
YYD3_k127_4428728_9 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000002008 181.0
YYD3_k127_4467602_0 PFAM Amylo-alpha-16-glucosidase - - - 2.816e-245 777.0
YYD3_k127_4467602_1 PFAM glycosyl transferase group 1 K12995 - 2.4.1.348 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 457.0
YYD3_k127_4467602_10 Tripartite tricarboxylate transporter family receptor - - - 0.0003912 43.0
YYD3_k127_4467602_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 366.0
YYD3_k127_4467602_3 Methyltransferase type 11 K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000000000000000004314 221.0
YYD3_k127_4467602_4 SMART cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000000000000007675 219.0
YYD3_k127_4467602_5 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000007013 177.0
YYD3_k127_4467602_6 Cold shock K03704 - - 0.000000000000000000000000000000000000000008912 164.0
YYD3_k127_4467602_7 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000006425 138.0
YYD3_k127_4467602_8 Immunity protein 32 - - - 0.000000763 55.0
YYD3_k127_4467602_9 peptidyl-tyrosine sulfation - - - 0.000104 48.0
YYD3_k127_4468047_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 4.124e-202 642.0
YYD3_k127_4468047_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 550.0
YYD3_k127_4468047_10 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000000002628 211.0
YYD3_k127_4468047_11 - - - - 0.0000000000000000000000000000000000000000000000005392 187.0
YYD3_k127_4468047_12 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000001685 167.0
YYD3_k127_4468047_13 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000001673 139.0
YYD3_k127_4468047_14 belongs to the nudix hydrolase family - - - 0.0000000000000167 75.0
YYD3_k127_4468047_15 - - - - 0.000000000001062 77.0
YYD3_k127_4468047_16 Metallo-beta-lactamase superfamily - - - 0.00000002205 63.0
YYD3_k127_4468047_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004752 512.0
YYD3_k127_4468047_3 phosphate starvation-inducible protein PhoH K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 462.0
YYD3_k127_4468047_4 Transporter associated domain K06189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004658 376.0
YYD3_k127_4468047_5 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005476 355.0
YYD3_k127_4468047_6 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000005733 245.0
YYD3_k127_4468047_7 regulator of disulfide bond formation K07397 - - 0.000000000000000000000000000000000000000000000000000000000000000503 222.0
YYD3_k127_4468047_8 Required for insertion of 4Fe-4S clusters K15724 - - 0.000000000000000000000000000000000000000000000000000000000000002984 218.0
YYD3_k127_4468047_9 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000000000000000000000001602 215.0
YYD3_k127_44730_0 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 602.0
YYD3_k127_44730_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 447.0
YYD3_k127_44730_10 PFAM ribosomal protein L31 K02909 - - 0.00000000000000000000000000000405 123.0
YYD3_k127_44730_11 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000445 93.0
YYD3_k127_44730_2 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 424.0
YYD3_k127_44730_3 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 424.0
YYD3_k127_44730_4 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 404.0
YYD3_k127_44730_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005322 310.0
YYD3_k127_44730_6 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005737 301.0
YYD3_k127_44730_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009942 258.0
YYD3_k127_44730_8 membrane protein domain - - - 0.000000000000000000000000000000000000000000000000000000001532 208.0
YYD3_k127_44730_9 Membrane - - - 0.0000000000000000000000000000000000000000000009375 180.0
YYD3_k127_448098_0 PFAM ABC transporter related K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 425.0
YYD3_k127_448098_1 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 368.0
YYD3_k127_448098_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001865 284.0
YYD3_k127_448098_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000003167 176.0
YYD3_k127_448098_4 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000001815 164.0
YYD3_k127_448098_5 Binding-protein-dependent transport system inner membrane component - - - 0.0000000001157 63.0
YYD3_k127_4515445_0 aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 501.0
YYD3_k127_4515445_1 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 436.0
YYD3_k127_4515445_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K11959 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 291.0
YYD3_k127_4515445_3 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K11712 - - 0.000000000000000000000000000000000000000000000000003344 189.0
YYD3_k127_4515445_4 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000000000000000000000008102 184.0
YYD3_k127_4515445_5 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000002857 185.0
YYD3_k127_45174_0 ABC-type Fe3 transport system, permease component K02011 - - 2.859e-218 695.0
YYD3_k127_45174_1 TOBE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 487.0
YYD3_k127_45174_2 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005479 402.0
YYD3_k127_45174_3 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004802 248.0
YYD3_k127_45174_4 Pfam:Pyridox_oxidase K07006 - - 0.00000000000000000000000000000000000000000000000000000002311 202.0
YYD3_k127_454436_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 4.751e-250 791.0
YYD3_k127_454436_1 Catalyzes the reversible formation of glyoxylate and succinate from isocitrate K01637 - 4.1.3.1 1.891e-220 691.0
YYD3_k127_454436_10 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 288.0
YYD3_k127_454436_11 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000004091 254.0
YYD3_k127_454436_12 rod shape-determining protein MreD K03571 - - 0.000000000000000000000000000000000000000002782 161.0
YYD3_k127_454436_13 integral membrane protein K02221 - - 0.0000000000000000000000000000000000000000157 161.0
YYD3_k127_454436_14 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000003887 116.0
YYD3_k127_454436_15 - - - - 0.000000000000000000009335 102.0
YYD3_k127_454436_16 Belongs to the UPF0235 family K09131 - - 0.00000000000000001122 92.0
YYD3_k127_454436_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 3.594e-206 651.0
YYD3_k127_454436_3 Rod shape-determining protein MreB K03569 - - 1.653e-202 633.0
YYD3_k127_454436_4 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 1.187e-195 631.0
YYD3_k127_454436_5 Major facilitator superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004971 601.0
YYD3_k127_454436_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 596.0
YYD3_k127_454436_7 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 477.0
YYD3_k127_454436_8 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005628 366.0
YYD3_k127_454436_9 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 344.0
YYD3_k127_455706_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.003e-272 857.0
YYD3_k127_455706_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 522.0
YYD3_k127_455706_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 425.0
YYD3_k127_455706_3 Queuosine biosynthesis protein K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 385.0
YYD3_k127_455706_4 Preprotein translocase subunit K03210 - - 0.000000000000000000000000000000000035 143.0
YYD3_k127_455706_5 HD domain K07814,K13815 - - 0.0000000000009754 74.0
YYD3_k127_4572694_0 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005565 405.0
YYD3_k127_4572694_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 352.0
YYD3_k127_4572694_2 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001934 246.0
YYD3_k127_4572694_3 DNA helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000001366 222.0
YYD3_k127_4602762_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005459 595.0
YYD3_k127_4602762_1 Secretin and TonB N terminus short domain K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005494 599.0
YYD3_k127_4602762_2 - - - - 0.0000000000000000000000000000000000823 143.0
YYD3_k127_4602762_3 - - - - 0.000000000000000002612 91.0
YYD3_k127_4602762_4 carbon utilization - - - 0.00000000000157 80.0
YYD3_k127_4602762_5 Periplasmic protein TonB links inner and outer membranes - - - 0.00000000008721 70.0
YYD3_k127_4602762_6 - - - - 0.0000000001871 68.0
YYD3_k127_4618850_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1230.0
YYD3_k127_4618850_1 PFAM ATPase family associated with various cellular activities (AAA) K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007353 407.0
YYD3_k127_4618850_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 330.0
YYD3_k127_4618850_3 - - - - 0.00000000000000000000000000000000000000000001198 170.0
YYD3_k127_4618850_4 - - - - 0.0000000000000000000000000000000000001095 154.0
YYD3_k127_4618850_5 Thioesterase superfamily protein - - - 0.0000000000000000000001653 102.0
YYD3_k127_4618850_6 Modulates RecA activity K03565 - - 0.000000000000000000001597 98.0
YYD3_k127_4618850_7 - - - - 0.0000000000000002234 88.0
YYD3_k127_4620417_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000758 595.0
YYD3_k127_4620417_1 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 584.0
YYD3_k127_4620417_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5,6.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006145 501.0
YYD3_k127_4620417_3 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000002527 255.0
YYD3_k127_4620417_4 Protein of unknown function (DUF2889) - - - 0.0000000000000000000000000000000000000000000000000002561 188.0
YYD3_k127_4620417_5 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000004626 133.0
YYD3_k127_4621585_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1376.0
YYD3_k127_4621585_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 1.433e-199 640.0
YYD3_k127_4621585_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008797 330.0
YYD3_k127_4621585_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.000000000000000000000000001466 112.0
YYD3_k127_4623579_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 524.0
YYD3_k127_4623579_1 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 419.0
YYD3_k127_4623579_2 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007437 394.0
YYD3_k127_4623579_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 376.0
YYD3_k127_4629361_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 1.147e-243 758.0
YYD3_k127_4629361_1 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.000000000000000000000000000000000000000000000001467 176.0
YYD3_k127_4629361_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000001586 150.0
YYD3_k127_4644145_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007776 586.0
YYD3_k127_4646936_0 Single-stranded-DNA-specific exonuclease RecJ K07462 - - 2.126e-216 686.0
YYD3_k127_4646936_1 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 9.16e-199 630.0
YYD3_k127_4646936_10 Cyclophilin-like K09143 - - 0.000000000000000000000000000000000004465 145.0
YYD3_k127_4646936_11 Glycine zipper 2TM domain - - - 0.00000000000000000000000000001247 128.0
YYD3_k127_4646936_12 Protein of unknown function (DUF561) K00459 - 1.13.12.16 0.0000000000000007036 79.0
YYD3_k127_4646936_13 KTSC domain - - - 0.000000005089 63.0
YYD3_k127_4646936_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 544.0
YYD3_k127_4646936_3 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 409.0
YYD3_k127_4646936_4 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 332.0
YYD3_k127_4646936_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000928 321.0
YYD3_k127_4646936_6 RQC K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000001148 263.0
YYD3_k127_4646936_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002532 261.0
YYD3_k127_4646936_8 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000723 171.0
YYD3_k127_4646936_9 DNA repair - GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0032259,GO:0034641,GO:0036260,GO:0036261,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071164,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 0.000000000000000000000000000000000000000006068 175.0
YYD3_k127_4674999_0 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 485.0
YYD3_k127_4674999_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 288.0
YYD3_k127_4674999_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000006771 183.0
YYD3_k127_4751490_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000925 529.0
YYD3_k127_4751490_1 Catalytic LigB subunit of aromatic ring-opening dioxygenase K04101 - 1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004611 405.0
YYD3_k127_4751490_10 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000001264 169.0
YYD3_k127_4751490_11 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.000000000000000002378 85.0
YYD3_k127_4751490_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 391.0
YYD3_k127_4751490_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 352.0
YYD3_k127_4751490_4 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 330.0
YYD3_k127_4751490_5 ABC transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003697 291.0
YYD3_k127_4751490_6 KR domain K00059,K07535 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003333 267.0
YYD3_k127_4751490_7 Vitamin k epoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002942 263.0
YYD3_k127_4751490_8 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000003826 233.0
YYD3_k127_4751490_9 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.000000000000000000000000000000000000000000000009793 175.0
YYD3_k127_4859799_0 Nucleoside K03289,K11537 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 605.0
YYD3_k127_4859799_1 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 412.0
YYD3_k127_4885888_0 Trap dicarboxylate transporter, dctm subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007506 554.0
YYD3_k127_4885888_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009917 522.0
YYD3_k127_4885888_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 505.0
YYD3_k127_4885888_3 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 439.0
YYD3_k127_4885888_4 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 383.0
YYD3_k127_4885888_5 pfam abc - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001656 256.0
YYD3_k127_4885888_6 LysR substrate binding domain K10972 - - 0.00000000000000000000000000000000000000000000000000000000000003324 225.0
YYD3_k127_4885888_7 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.00000000000000000000000000000000000000000000002112 176.0
YYD3_k127_4885888_8 SMART Cold shock protein K03704 - - 0.00000000000000000000000000003238 119.0
YYD3_k127_4885888_9 Translation initiation factor 1A / IF-1 K02518 - - 0.00000000000000000000000001486 114.0
YYD3_k127_4909158_0 COG0210 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004691 379.0
YYD3_k127_4909158_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001187 270.0
YYD3_k127_4909158_2 Protein of unknown function (DUF1643) - - - 0.0000000000000000000000000000000000000000000000000000002635 199.0
YYD3_k127_4909158_3 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.00000000000000000000000000000000000000000000000000009333 195.0
YYD3_k127_4909158_4 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.00000000000000000000000000000000002344 143.0
YYD3_k127_4909158_5 endonuclease - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000004574 133.0
YYD3_k127_4909158_6 Uncharacterized protein conserved in bacteria (DUF2171) - - - 0.000000000000000000004102 96.0
YYD3_k127_4912787_0 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005302 616.0
YYD3_k127_4912787_1 4-hydroxyphenylacetate 3-hydroxylase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 590.0
YYD3_k127_4912787_10 Thioesterase - - - 0.000000000000000000000000000000197 126.0
YYD3_k127_4912787_11 - - - - 0.0000000000002778 72.0
YYD3_k127_4912787_12 ChrR Cupin-like domain - - - 0.000000000005535 76.0
YYD3_k127_4912787_13 Protein of unknown function (DUF2846) - - - 0.0000004698 52.0
YYD3_k127_4912787_2 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 533.0
YYD3_k127_4912787_3 NMT1-like family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 399.0
YYD3_k127_4912787_4 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 385.0
YYD3_k127_4912787_5 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000002621 266.0
YYD3_k127_4912787_6 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001315 264.0
YYD3_k127_4912787_7 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000163 238.0
YYD3_k127_4912787_8 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000000000000000000000000002542 154.0
YYD3_k127_4912787_9 MarR family - - - 0.000000000000000000000000000000006961 134.0
YYD3_k127_4918310_0 Belongs to the DapA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 496.0
YYD3_k127_4918310_1 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000794 385.0
YYD3_k127_4918310_2 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 337.0
YYD3_k127_4918310_3 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000003169 193.0
YYD3_k127_4918310_4 Carbon monoxide dehydrogenase subunit G (CoxG) - - - 0.00000008017 64.0
YYD3_k127_4921601_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.419e-289 912.0
YYD3_k127_4921601_1 ABC-type sugar transport system, permease component K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006169 382.0
YYD3_k127_4921601_2 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000004033 231.0
YYD3_k127_4921601_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000001696 154.0
YYD3_k127_4922129_0 dihydroorotase K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 569.0
YYD3_k127_4922129_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 467.0
YYD3_k127_4922129_10 Belongs to the UPF0250 family K09158 - - 0.000000000002581 72.0
YYD3_k127_4922129_2 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 453.0
YYD3_k127_4922129_3 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 381.0
YYD3_k127_4922129_4 Aminotransferase class IV K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 349.0
YYD3_k127_4922129_5 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000000000000003267 249.0
YYD3_k127_4922129_6 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000003454 243.0
YYD3_k127_4922129_7 Protein of unknown function (DUF4197) - - - 0.00000000000000000000000000000000000000000000000000000000000000003113 231.0
YYD3_k127_4922129_8 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000006721 151.0
YYD3_k127_4922129_9 Redoxin domain protein - - - 0.0000000000000000000000000000000000003079 151.0
YYD3_k127_4922826_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2065.0
YYD3_k127_4922826_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005382 436.0
YYD3_k127_4922826_2 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009783 282.0
YYD3_k127_4922826_3 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000002686 244.0
YYD3_k127_4922826_4 COG1247 Sortase and related acyltransferases K03823 - 2.3.1.183 0.000000000000000000000000000000000000000000000000000000000001224 214.0
YYD3_k127_4922826_5 - - - - 0.000000000000000000000000000000000000002597 149.0
YYD3_k127_4922826_6 - - - - 0.0000000006291 61.0
YYD3_k127_4928558_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 421.0
YYD3_k127_4928558_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 420.0
YYD3_k127_4928558_2 permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000022 286.0
YYD3_k127_4928558_3 phospholipase d K01115 - 3.1.4.4 0.0000000000000000000000000000000000001572 151.0
YYD3_k127_4928558_4 cheY-homologous receiver domain - - - 0.00000000000000004727 95.0
YYD3_k127_4931544_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 380.0
YYD3_k127_4931544_1 Luciferase-like monooxygenase K15854 - 1.14.14.3 0.0000000000000000000000000000000000000000000000000000000000001222 231.0
YYD3_k127_4931544_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000005023 145.0
YYD3_k127_4945140_0 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 1.3e-247 779.0
YYD3_k127_4945140_1 PFAM ABC transporter K02471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003376 457.0
YYD3_k127_4945140_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 366.0
YYD3_k127_4945140_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 316.0
YYD3_k127_4945140_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000008689 164.0
YYD3_k127_4945140_5 Phospholipase Carboxylesterase K06999 GO:0003674,GO:0003824,GO:0016787,GO:0016788,GO:0052689 - 0.0000000000000000000000000000000009385 139.0
YYD3_k127_4945140_6 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.00000000000000000000000000001094 127.0
YYD3_k127_4962765_0 Hydantoinase/oxoprolinase K01469,K01473 - 3.5.2.14,3.5.2.9 3.111e-288 895.0
YYD3_k127_4962765_1 Aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 397.0
YYD3_k127_4962765_2 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000003487 142.0
YYD3_k127_4962765_3 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000513 109.0
YYD3_k127_4979835_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K04090 - 1.2.7.8 0.0 1539.0
YYD3_k127_4979835_1 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005641 291.0
YYD3_k127_5000055_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007475 427.0
YYD3_k127_5000055_1 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000001152 182.0
YYD3_k127_5000055_2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000001882 138.0
YYD3_k127_5000055_3 Rubrerythrin - - - 0.0000000000000000000000000000000006389 143.0
YYD3_k127_5000055_4 KR domain K00059,K07535 - 1.1.1.100 0.0000000000000000000000006103 106.0
YYD3_k127_5001767_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K11747 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006093 548.0
YYD3_k127_5001767_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000646 231.0
YYD3_k127_5001767_2 - - - - 0.0000000000000000000000000000000000000000000000000008403 190.0
YYD3_k127_5001767_3 Flavin reductase like domain - - - 0.00000000000000000000000000001236 135.0
YYD3_k127_5001767_4 Major facilitator Superfamily - - - 0.00000000000000000001398 106.0
YYD3_k127_5015054_0 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 303.0
YYD3_k127_5015054_1 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001431 273.0
YYD3_k127_5015054_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000003847 160.0
YYD3_k127_5015054_3 Rubredoxin - - - 0.0000000000000000000000000000002002 124.0
YYD3_k127_5015054_4 Likely ribonuclease with RNase H fold. - - - 0.000000000000000000000000000005626 126.0
YYD3_k127_5015054_5 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000001201 114.0
YYD3_k127_5028943_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K15509 - 1.1.1.308 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 533.0
YYD3_k127_5028943_1 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 444.0
YYD3_k127_5028943_2 ABC transporter K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 379.0
YYD3_k127_5028943_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002426 273.0
YYD3_k127_5086681_0 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001884 494.0
YYD3_k127_5086681_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 292.0
YYD3_k127_5086681_2 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000116 233.0
YYD3_k127_5086681_3 - - - - 0.000000000000000000000000000000000000000002135 162.0
YYD3_k127_5086681_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000001055 162.0
YYD3_k127_5086681_5 Periplasmic binding protein domain K01999 - - 0.0000000000000000001112 98.0
YYD3_k127_510832_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 6.049e-220 686.0
YYD3_k127_510832_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 472.0
YYD3_k127_510832_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 368.0
YYD3_k127_510832_3 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.00000000000000000000000000003238 119.0
YYD3_k127_5120529_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 439.0
YYD3_k127_5120529_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 409.0
YYD3_k127_5120529_2 Transcriptional regulatory protein, C terminal K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 307.0
YYD3_k127_5120529_3 Pfam Sulfatase K01133 - 3.1.6.6 0.0000000000000000000000000000000000000000000000000000000000000000001796 235.0
YYD3_k127_5120529_4 - - - - 0.000000000000000000000000000000000000000000000000000000000002395 218.0
YYD3_k127_5120529_5 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000001115 168.0
YYD3_k127_5120529_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K12976 - - 0.00000000000000001795 90.0
YYD3_k127_5120529_7 PFAM response regulator receiver K13599 - - 0.000000000002359 74.0
YYD3_k127_5124396_0 Cobalamin-independent synthase, Catalytic domain K00549,K22363 - 2.1.1.14,4.4.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008357 554.0
YYD3_k127_5124396_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 413.0
YYD3_k127_5124396_2 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 332.0
YYD3_k127_5124396_3 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000162 257.0
YYD3_k127_5124396_4 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000000000000000000000003315 176.0
YYD3_k127_5124396_5 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000000000000000001384 87.0
YYD3_k127_5179351_0 Uncharacterized ACR, YdiU/UPF0061 family - - - 1.303e-219 691.0
YYD3_k127_5179351_1 Protein of unknown function (DUF1343) - - - 9.052e-204 640.0
YYD3_k127_5179351_10 involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000007946 173.0
YYD3_k127_5179351_11 Belongs to the CinA family - - - 0.0000000000000000000000000000000000000000002507 163.0
YYD3_k127_5179351_12 VirC1 protein K03496 - - 0.000000000000000000000000000000000000002172 157.0
YYD3_k127_5179351_13 - - - - 0.00000000000000000000000000000000000004548 155.0
YYD3_k127_5179351_14 Belongs to the P-Pant transferase superfamily K06133 - - 0.00000000000000000000000000000000000017 156.0
YYD3_k127_5179351_15 histidine kinase A domain protein - - - 0.000000000000000000000002013 107.0
YYD3_k127_5179351_2 Amino acid adenylation enzyme thioester reductase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004726 530.0
YYD3_k127_5179351_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 496.0
YYD3_k127_5179351_4 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 390.0
YYD3_k127_5179351_5 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 309.0
YYD3_k127_5179351_6 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001118 260.0
YYD3_k127_5179351_7 Thioesterase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003596 259.0
YYD3_k127_5179351_8 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000006381 226.0
YYD3_k127_5179351_9 SCO1/SenC K07152 - - 0.000000000000000000000000000000000000000000000000000001347 199.0
YYD3_k127_5179538_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1414.0
YYD3_k127_5179538_1 TRAP transporter, 4TM 12TM fusion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007956 539.0
YYD3_k127_5179538_10 Antibiotic biosynthesis monooxygenase - - - 0.00000007531 53.0
YYD3_k127_5179538_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 503.0
YYD3_k127_5179538_3 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001814 278.0
YYD3_k127_5179538_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000000000000000000001658 231.0
YYD3_k127_5179538_5 response to abiotic stimulus K06867 - - 0.0000000000000000000000000000000000000000000000002711 185.0
YYD3_k127_5179538_6 Helix-turn-helix domain, rpiR family - - - 0.000000000000000000000000000000000009452 147.0
YYD3_k127_5179538_7 Domain of unknown function (DUF4387) - - - 0.00000000000000000000000000000000001076 148.0
YYD3_k127_5179538_8 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.0000000000000000000000000000000006923 142.0
YYD3_k127_5179538_9 NMT1-like family - - - 0.0000000000000000000007004 111.0
YYD3_k127_5179664_0 histidine kinase A domain protein - - - 4.749e-242 767.0
YYD3_k127_5179664_1 PFAM Cytochrome c, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 587.0
YYD3_k127_5179664_10 - - - - 0.00000000000000000000003598 102.0
YYD3_k127_5179664_12 GGDEF domain - - - 0.000002034 58.0
YYD3_k127_5179664_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 343.0
YYD3_k127_5179664_3 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 321.0
YYD3_k127_5179664_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 296.0
YYD3_k127_5179664_5 Putative methyltransferase - - - 0.0000000000000000000000000000000000000000000000000004191 190.0
YYD3_k127_5179664_6 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000004744 188.0
YYD3_k127_5179664_7 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000004193 141.0
YYD3_k127_5179664_8 - - - - 0.00000000000000000000000002258 115.0
YYD3_k127_5179664_9 PAS fold - - - 0.000000000000000000000007357 107.0
YYD3_k127_5189066_0 Sulfatase - - - 3.179e-243 760.0
YYD3_k127_5189066_1 PFAM Mandelate racemase muconate lactonizing enzyme, C-terminal domain K18983 - 5.5.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 423.0
YYD3_k127_5189066_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006376 281.0
YYD3_k127_5189066_3 SelR domain K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000002078 230.0
YYD3_k127_5190094_0 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 334.0
YYD3_k127_5190094_1 pfkB family carbohydrate kinase K00852,K00856 - 2.7.1.15,2.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000002917 246.0
YYD3_k127_5190094_2 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000003292 236.0
YYD3_k127_5190094_3 Histidine triad (Hit) protein K02503 - - 0.00000000000000000000000000000000000000000001471 167.0
YYD3_k127_5195426_0 TIGRFAM 3-oxoacid CoA-transferase, A subunit K01031 - 2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005054 353.0
YYD3_k127_5195426_1 Coenzyme A transferase K01032 - 2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895 344.0
YYD3_k127_5195426_2 Alcohol dehydrogenase GroES-like domain K00055 - 1.1.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 351.0
YYD3_k127_5195426_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 300.0
YYD3_k127_5195426_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009325 297.0
YYD3_k127_5195426_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003226 286.0
YYD3_k127_5195426_6 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000005693 196.0
YYD3_k127_5195426_7 Amidohydrolase family - - - 0.00000000000000000000000000000000000004176 153.0
YYD3_k127_5195703_0 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0 1355.0
YYD3_k127_5195703_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 6.994e-253 799.0
YYD3_k127_5195703_10 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 - - 0.0000000000000000000000000000000003206 141.0
YYD3_k127_5195703_11 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.00000000000000000000000000001185 123.0
YYD3_k127_5195703_12 Flavinator of succinate dehydrogenase K09159 - - 0.00000003774 64.0
YYD3_k127_5195703_13 PspC domain K03973 - - 0.000001114 55.0
YYD3_k127_5195703_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.078e-227 710.0
YYD3_k127_5195703_3 Amidohydrolase family K01465 - 3.5.2.3 6.874e-198 626.0
YYD3_k127_5195703_4 Belongs to the citrate synthase family K01659 - 2.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 550.0
YYD3_k127_5195703_5 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 531.0
YYD3_k127_5195703_6 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 480.0
YYD3_k127_5195703_7 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 426.0
YYD3_k127_5195703_8 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K03417 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006113,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015980,GO:0016042,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019752,GO:0032787,GO:0042737,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0046421,GO:0046459,GO:0046872,GO:0055114,GO:0071704,GO:0072329,GO:1901575 4.1.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 424.0
YYD3_k127_5195703_9 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007038 276.0
YYD3_k127_5202447_0 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 401.0
YYD3_k127_5202447_1 phytoene K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002266 292.0
YYD3_k127_5202447_2 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.000000000000000005787 86.0
YYD3_k127_5202447_3 Non-ribosomal peptide synthetase modules and related proteins - - - 0.00000000000002697 79.0
YYD3_k127_5204018_0 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005196 450.0
YYD3_k127_5204018_1 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 359.0
YYD3_k127_5204018_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000582 314.0
YYD3_k127_5204018_3 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000004975 218.0
YYD3_k127_5204018_4 Outer membrane protein beta-barrel domain - - - 0.000000000000000000001718 101.0
YYD3_k127_5213572_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1170.0
YYD3_k127_5213572_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 4.983e-224 706.0
YYD3_k127_5213572_2 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 370.0
YYD3_k127_5213572_3 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 287.0
YYD3_k127_5213572_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002431 258.0
YYD3_k127_5213572_5 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000002244 226.0
YYD3_k127_5213572_6 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000004448 197.0
YYD3_k127_5213572_7 Protein of unknown function (DUF2946) - - - 0.0000000000000000000000000000000000000003818 154.0
YYD3_k127_5213572_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000345 125.0
YYD3_k127_5233368_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 544.0
YYD3_k127_5233368_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 507.0
YYD3_k127_5233368_10 transcriptional - - - 0.0000000000000000000000000000000000000000003313 166.0
YYD3_k127_5233368_11 - - - - 0.000000000000000000000000000000000000000004109 169.0
YYD3_k127_5233368_12 Cupin domain K01607 - 4.1.1.44 0.0000000000000000000000000000000444 135.0
YYD3_k127_5233368_13 Aminotransferase class I and II K00832 - 2.6.1.57 0.0000000000000000000001058 98.0
YYD3_k127_5233368_14 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000837 68.0
YYD3_k127_5233368_2 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 516.0
YYD3_k127_5233368_3 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005703 321.0
YYD3_k127_5233368_4 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 337.0
YYD3_k127_5233368_5 Maltose acetyltransferase K00661 - 2.3.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 306.0
YYD3_k127_5233368_6 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 315.0
YYD3_k127_5233368_7 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001087 265.0
YYD3_k127_5233368_8 TRAP dicarboxylate transporter - - - 0.000000000000000000000000000000000000000000000000000000002387 213.0
YYD3_k127_5233368_9 - - - - 0.000000000000000000000000000000000000000000000000000008536 194.0
YYD3_k127_5245122_0 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 505.0
YYD3_k127_5245122_1 Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA K00219,K09461 - 1.14.13.40,1.3.1.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 475.0
YYD3_k127_5245122_2 ACT domain - - - 0.000000000000000000000000000000006981 134.0
YYD3_k127_5288092_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.519e-210 662.0
YYD3_k127_5288092_1 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 493.0
YYD3_k127_5288092_2 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 462.0
YYD3_k127_5288092_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006334 446.0
YYD3_k127_5288092_4 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 415.0
YYD3_k127_5288092_5 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 345.0
YYD3_k127_5288092_6 cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 363.0
YYD3_k127_5288092_7 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000004346 115.0
YYD3_k127_5302928_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 1.791e-266 838.0
YYD3_k127_5302928_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 9.513e-230 724.0
YYD3_k127_5302928_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 525.0
YYD3_k127_5302928_3 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 439.0
YYD3_k127_5302928_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002811 299.0
YYD3_k127_5302928_5 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000006313 239.0
YYD3_k127_5302928_6 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000002176 222.0
YYD3_k127_5302928_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000003289 164.0
YYD3_k127_5329114_0 L-seryl-tRNA selenium transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 459.0
YYD3_k127_5329114_1 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 445.0
YYD3_k127_5329114_2 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000555 395.0
YYD3_k127_5329114_3 Hydantoinase B/oxoprolinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 358.0
YYD3_k127_5329114_4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000009509 203.0
YYD3_k127_5329114_5 Domain of unknown function (DUF427) - - - 0.0000000000000000000000000000007056 130.0
YYD3_k127_5329114_6 translation initiation factor activity K06996 - - 0.0000000000000003113 83.0
YYD3_k127_5329114_7 Domain of unknown function (DU1801) - - - 0.00000001136 61.0
YYD3_k127_5348802_0 III protein, CoA-transferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 543.0
YYD3_k127_5348802_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 531.0
YYD3_k127_5348802_10 4-carboxymuconolactone decarboxylase K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000001069 174.0
YYD3_k127_5348802_11 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000005735 175.0
YYD3_k127_5348802_12 Tripartite tricarboxylate transporter family receptor - - - 0.00000002186 59.0
YYD3_k127_5348802_13 OmpA-like transmembrane domain - - - 0.000000109 57.0
YYD3_k127_5348802_2 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 456.0
YYD3_k127_5348802_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 357.0
YYD3_k127_5348802_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 350.0
YYD3_k127_5348802_5 Belongs to the enoyl-CoA hydratase isomerase family K01692,K11264 - 4.1.1.41,4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 328.0
YYD3_k127_5348802_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004429 243.0
YYD3_k127_5348802_7 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000001159 238.0
YYD3_k127_5348802_8 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000003087 223.0
YYD3_k127_5348802_9 High-affinity branched-chain amino acid transport protein (ABC superfamily K01996 - - 0.00000000000000000000000000000000000000000000000000000000002615 215.0
YYD3_k127_5373487_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 1.852e-273 854.0
YYD3_k127_5373487_1 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 533.0
YYD3_k127_5373487_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 445.0
YYD3_k127_5373487_3 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 378.0
YYD3_k127_5373487_4 Protein kinase domain - - - 0.00000000000000000000000003075 115.0
YYD3_k127_5373487_5 hyperosmotic response - - - 0.0004141 53.0
YYD3_k127_5408599_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 411.0
YYD3_k127_5408599_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 374.0
YYD3_k127_5408599_2 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 336.0
YYD3_k127_5408599_3 PFAM response regulator receiver K11443 - - 0.0000000000000000000000000000000083 136.0
YYD3_k127_5408599_4 HWE histidine kinase - - - 0.000000000000000000000000002429 130.0
YYD3_k127_54308_0 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 1.618e-306 946.0
YYD3_k127_54308_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007605 598.0
YYD3_k127_54308_10 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.0000000000000000000000000000002904 139.0
YYD3_k127_54308_11 RDD family - - - 0.00000000000000000000000001488 115.0
YYD3_k127_54308_12 Protein of unknown function (DUF3106) - - - 0.0000000000000000000000001953 112.0
YYD3_k127_54308_13 Protein of unknown function (DUF3619) - - - 0.00000000000001828 80.0
YYD3_k127_54308_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 550.0
YYD3_k127_54308_3 Permease YjgP YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 398.0
YYD3_k127_54308_4 Permease, YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 392.0
YYD3_k127_54308_5 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 319.0
YYD3_k127_54308_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006676 303.0
YYD3_k127_54308_7 C4-dicarboxylate ABC transporter permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002922 296.0
YYD3_k127_54308_8 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001865 259.0
YYD3_k127_54308_9 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000003838 256.0
YYD3_k127_5444062_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 3.944e-262 821.0
YYD3_k127_5444062_1 COG0437 Fe-S-cluster-containing hydrogenase components 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 353.0
YYD3_k127_5444062_2 DMSO reductase anchor subunit (DmsC) K18363 - - 0.00000000000000000000000000000000000000000000009361 178.0
YYD3_k127_5478146_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 431.0
YYD3_k127_5478146_1 Domain of unknown function (DUF1989) K09967 - - 0.000000000000000000000000000000000000000000000201 171.0
YYD3_k127_5478146_2 Putative methyltransferase K03439 - 2.1.1.33 0.00000000000000000000000000000000005084 136.0
YYD3_k127_5478146_3 ThiS family K03154 - - 0.00000000000000001638 84.0
YYD3_k127_5497820_0 peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 531.0
YYD3_k127_5497820_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000001452 265.0
YYD3_k127_5497820_2 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000000000005734 224.0
YYD3_k127_5497820_3 Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000000000000000000002106 105.0
YYD3_k127_5501162_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 2.385e-203 654.0
YYD3_k127_5501162_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 574.0
YYD3_k127_5501162_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 460.0
YYD3_k127_5501162_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000626 455.0
YYD3_k127_5501162_4 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009161 304.0
YYD3_k127_5501162_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000000000001643 89.0
YYD3_k127_5520237_0 Metallopeptidase family M24 - - - 2.163e-206 652.0
YYD3_k127_5520237_1 Belongs to the LDH2 MDH2 oxidoreductase family K00073 - 1.1.1.350 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002188 287.0
YYD3_k127_5520237_2 6-phosphogluconate dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000001067 228.0
YYD3_k127_5520237_3 Haloacid dehalogenase-like hydrolase K07025 - - 0.00003188 55.0
YYD3_k127_5525872_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 528.0
YYD3_k127_5525872_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 409.0
YYD3_k127_5525872_2 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 369.0
YYD3_k127_5525872_3 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 342.0
YYD3_k127_5525872_4 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001317 255.0
YYD3_k127_5525872_5 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000009625 183.0
YYD3_k127_5525872_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000000000000000000000000000000000000000000000012 177.0
YYD3_k127_5525872_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000002652 158.0
YYD3_k127_5525872_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000001793 140.0
YYD3_k127_5525872_9 ATP synthase I chain K02116 - - 0.00000000000005213 76.0
YYD3_k127_5551139_0 Amidohydrolase family - - - 5.31e-251 784.0
YYD3_k127_5551139_1 Belongs to the sigma-70 factor family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 510.0
YYD3_k127_5551139_2 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000001274 162.0
YYD3_k127_5551139_3 Diguanylate cyclase - - - 0.0000000000004273 81.0
YYD3_k127_5551139_4 Enoyl-CoA hydratase/isomerase - - - 0.000000001353 59.0
YYD3_k127_5551139_5 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000003351 58.0
YYD3_k127_5567487_0 histidine kinase A domain protein - - - 0.0 1993.0
YYD3_k127_5567487_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 600.0
YYD3_k127_5567487_2 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 347.0
YYD3_k127_5572690_0 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 556.0
YYD3_k127_5572690_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 488.0
YYD3_k127_5572690_10 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 304.0
YYD3_k127_5572690_11 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008671 299.0
YYD3_k127_5572690_12 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 294.0
YYD3_k127_5572690_13 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007609 266.0
YYD3_k127_5572690_14 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000003637 243.0
YYD3_k127_5572690_15 - - - - 0.00000000000000000000000000000000000000000000000000000005711 206.0
YYD3_k127_5572690_16 RDD family - - - 0.000000000000000000000000000004415 124.0
YYD3_k127_5572690_17 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000009719 103.0
YYD3_k127_5572690_18 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) - - - 0.0000000000000000007377 99.0
YYD3_k127_5572690_19 Copper homeostasis K06079 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0010810,GO:0016020,GO:0019867,GO:0030155,GO:0030312,GO:0030313,GO:0031975,GO:0042802,GO:0044462,GO:0044464,GO:0050789,GO:0065007,GO:0071944 - 0.0000682 52.0
YYD3_k127_5572690_2 Acyl-CoA dehydrogenase, middle domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 440.0
YYD3_k127_5572690_3 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 408.0
YYD3_k127_5572690_4 N-terminal domain of oxidoreductase K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 403.0
YYD3_k127_5572690_5 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 334.0
YYD3_k127_5572690_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 326.0
YYD3_k127_5572690_7 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 318.0
YYD3_k127_5572690_8 KR domain K00076,K08081 - 1.1.1.159,1.1.1.206 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 309.0
YYD3_k127_5572690_9 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 304.0
YYD3_k127_5574718_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 599.0
YYD3_k127_5574718_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 497.0
YYD3_k127_5574718_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005265 311.0
YYD3_k127_5574718_3 Aldo/keto reductase family K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 284.0
YYD3_k127_5574718_4 glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000007056 198.0
YYD3_k127_5574718_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000001316 179.0
YYD3_k127_5588957_0 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 7.683e-235 734.0
YYD3_k127_5588957_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 590.0
YYD3_k127_5588957_2 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000003593 239.0
YYD3_k127_5588957_3 Redoxin K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000002597 219.0
YYD3_k127_5588957_4 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000000000000000000002214 202.0
YYD3_k127_5588957_5 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000000000000001139 193.0
YYD3_k127_5588957_6 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000000000002129 137.0
YYD3_k127_5588957_7 Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000000000000007701 128.0
YYD3_k127_5588957_8 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.00000000000000000005268 93.0
YYD3_k127_5588957_9 helix_turn_helix, Lux Regulon - - - 0.00000001108 57.0
YYD3_k127_5597785_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1202.0
YYD3_k127_5597785_1 DNA helicase K03657 - 3.6.4.12 1.331e-201 634.0
YYD3_k127_5597785_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 557.0
YYD3_k127_5597785_3 Flavin containing amine oxidoreductase K02293 - 1.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 519.0
YYD3_k127_5597785_4 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000916 278.0
YYD3_k127_5597785_5 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001466 264.0
YYD3_k127_5597785_6 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.0000000000000000000000000000000000009432 144.0
YYD3_k127_5597785_7 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000001359 136.0
YYD3_k127_5597785_8 Sporulation related domain - - - 0.00000000000003338 78.0
YYD3_k127_5597785_9 Sporulation related domain - - - 0.00000008695 57.0
YYD3_k127_5607298_0 4-Hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 550.0
YYD3_k127_5607298_1 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 441.0
YYD3_k127_5607298_10 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000001025 163.0
YYD3_k127_5607298_11 manually curated - - - 0.00000000000000000000000000000001924 128.0
YYD3_k127_5607298_12 - - - - 0.000000000000002114 77.0
YYD3_k127_5607298_13 Trap-type c4-dicarboxylate transport system, small permease component K11689 - - 0.0000000000000471 78.0
YYD3_k127_5607298_14 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.0000002119 61.0
YYD3_k127_5607298_15 Hepn domain protein - - - 0.00005332 45.0
YYD3_k127_5607298_2 UDP-glucose 4-epimerase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 426.0
YYD3_k127_5607298_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 413.0
YYD3_k127_5607298_4 PFAM aromatic amino acid K00500 - 1.14.16.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004753 362.0
YYD3_k127_5607298_5 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 346.0
YYD3_k127_5607298_6 COG1943 Transposase and inactivated derivatives K07491 - - 0.000000000000000000000000000000000000000000000000000000000000000054 232.0
YYD3_k127_5607298_7 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K04090 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000006352 229.0
YYD3_k127_5607298_8 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000004757 213.0
YYD3_k127_5607298_9 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000009886 217.0
YYD3_k127_5626009_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0 1113.0
YYD3_k127_5626009_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004028 533.0
YYD3_k127_5626009_2 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004713 409.0
YYD3_k127_5636146_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 426.0
YYD3_k127_5636146_1 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004353 389.0
YYD3_k127_5636146_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001026 276.0
YYD3_k127_5636146_3 Cytochrome c K08738 - - 0.00000000000000000000000000001247 124.0
YYD3_k127_5636146_4 Protein of unknown function, DUF255 K06888 - - 0.000000000008716 68.0
YYD3_k127_5670530_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.952e-244 767.0
YYD3_k127_5670530_1 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 505.0
YYD3_k127_5670530_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 325.0
YYD3_k127_5670530_3 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002556 282.0
YYD3_k127_5670530_4 G-rich domain on putative tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001987 282.0
YYD3_k127_5670530_5 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000007474 241.0
YYD3_k127_5670530_6 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000000000000000000000000001119 220.0
YYD3_k127_5670530_7 SurA N-terminal domain - - - 0.000000000000000000000000000000000000000000000004557 186.0
YYD3_k127_5674381_0 type II secretion system protein K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 463.0
YYD3_k127_5674381_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000002538 233.0
YYD3_k127_5674381_2 - - - - 0.00000000000000002086 91.0
YYD3_k127_5674381_3 - - - - 0.00000000000003214 81.0
YYD3_k127_5674428_0 Aldehyde oxidase and xanthine dehydrogenase K03520 - 1.2.5.3 5.482e-237 739.0
YYD3_k127_5674428_1 Dehydrogenase K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009574 323.0
YYD3_k127_5674428_2 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000000000000000000000000000000000000000001115 175.0
YYD3_k127_5687117_0 Catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate K07404 - 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 340.0
YYD3_k127_5687117_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001308 228.0
YYD3_k127_5687117_2 ABC transporter - - - 0.000000000000000000000000000000000000000000000000001488 186.0
YYD3_k127_5687117_3 glyoxalase bleomycin resistance protein - - - 0.0000000000000000000000000000000000000000000000004562 178.0
YYD3_k127_5687117_4 PFAM NLP P60 protein - - - 0.000000000000000000000000000001638 126.0
YYD3_k127_5687117_5 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000001211 122.0
YYD3_k127_5687117_6 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000007679 122.0
YYD3_k127_5687117_7 GCN5-related N-acetyl-transferase K06975 - - 0.0000000000000000000000004086 107.0
YYD3_k127_5755885_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 1.776e-283 886.0
YYD3_k127_5755885_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 534.0
YYD3_k127_5755885_2 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003634 274.0
YYD3_k127_5755885_3 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000001716 225.0
YYD3_k127_5755885_4 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000000000000000000338 167.0
YYD3_k127_5755885_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000001929 141.0
YYD3_k127_5767383_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 565.0
YYD3_k127_5767383_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 507.0
YYD3_k127_5767383_2 Protein of unknown function (DUF993) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 499.0
YYD3_k127_5767383_3 Trap-type c4-dicarboxylate transport system, small permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000001928 239.0
YYD3_k127_5767383_4 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000504 214.0
YYD3_k127_5767383_5 Mandelate Racemase Muconate Lactonizing - - - 0.000000000000000000000000000000000000000000000000000008338 193.0
YYD3_k127_5767383_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000003988 168.0
YYD3_k127_5767383_7 TIGRFAM TRAP transporter, DctM subunit - - - 0.00000000000000000000000000000000000222 139.0
YYD3_k127_5769755_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 1.176e-251 812.0
YYD3_k127_5769755_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 8.761e-239 744.0
YYD3_k127_5769755_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 377.0
YYD3_k127_5769755_11 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 359.0
YYD3_k127_5769755_12 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 334.0
YYD3_k127_5769755_13 Zn-dependent protease with chaperone function K07387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 329.0
YYD3_k127_5769755_14 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 308.0
YYD3_k127_5769755_15 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009307 292.0
YYD3_k127_5769755_16 DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 294.0
YYD3_k127_5769755_17 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004103 289.0
YYD3_k127_5769755_18 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003041 268.0
YYD3_k127_5769755_19 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000005879 245.0
YYD3_k127_5769755_2 GcpE protein K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000827 615.0
YYD3_k127_5769755_20 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000000001006 246.0
YYD3_k127_5769755_21 type 4 pilus biogenesis protein K02656 - - 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
YYD3_k127_5769755_22 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000009097 228.0
YYD3_k127_5769755_23 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000002555 209.0
YYD3_k127_5769755_24 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000005106 161.0
YYD3_k127_5769755_25 Transcriptional regulator K15539 - - 0.00000000000000000000000000000000000006257 154.0
YYD3_k127_5769755_26 WHG domain - - - 0.00000000000000000000000007154 113.0
YYD3_k127_5769755_27 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000158 100.0
YYD3_k127_5769755_28 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000001176 94.0
YYD3_k127_5769755_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 572.0
YYD3_k127_5769755_4 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 538.0
YYD3_k127_5769755_5 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 509.0
YYD3_k127_5769755_6 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 503.0
YYD3_k127_5769755_7 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 484.0
YYD3_k127_5769755_8 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669 422.0
YYD3_k127_5769755_9 LysM domain K08086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 406.0
YYD3_k127_5777145_0 Transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.0 1354.0
YYD3_k127_5777145_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000761 532.0
YYD3_k127_5777145_10 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000001458 118.0
YYD3_k127_5777145_11 Heavy metal transport detoxification protein K07213 - - 0.0000000000000001579 82.0
YYD3_k127_5777145_2 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000392 396.0
YYD3_k127_5777145_3 Outer membrane efflux protein K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009221 395.0
YYD3_k127_5777145_4 Molecular chaperone K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 335.0
YYD3_k127_5777145_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K18145 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007414 339.0
YYD3_k127_5777145_6 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000003694 230.0
YYD3_k127_5777145_7 PFAM Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000001469 218.0
YYD3_k127_5777145_8 Bacterial transcriptional repressor C-terminal - - - 0.000000000000000000000000000000000004888 143.0
YYD3_k127_5777145_9 Thioesterase - - - 0.0000000000000000000000000000000003592 136.0
YYD3_k127_5788436_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 2.725e-288 895.0
YYD3_k127_5788436_1 ACT domain K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005648 595.0
YYD3_k127_5788436_10 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 406.0
YYD3_k127_5788436_11 pfkB family carbohydrate kinase K21344 - 2.7.1.167 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669 376.0
YYD3_k127_5788436_12 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 315.0
YYD3_k127_5788436_13 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 323.0
YYD3_k127_5788436_14 peptidase S1 and S6, chymotrypsin Hap - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 299.0
YYD3_k127_5788436_15 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006154 278.0
YYD3_k127_5788436_16 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000109 259.0
YYD3_k127_5788436_17 Belongs to the BI1 family K19416 - - 0.000000000000000000000000000000000000000000000000000000000000000000001365 243.0
YYD3_k127_5788436_18 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000002819 194.0
YYD3_k127_5788436_19 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000006654 165.0
YYD3_k127_5788436_2 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 533.0
YYD3_k127_5788436_20 PAS fold - - - 0.0000000000000000000000000000000001617 145.0
YYD3_k127_5788436_21 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000001019 102.0
YYD3_k127_5788436_22 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000002259 86.0
YYD3_k127_5788436_23 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000000000004581 81.0
YYD3_k127_5788436_24 metal-dependent enzyme of the double-stranded beta helix superfamily - - - 0.0000000007279 67.0
YYD3_k127_5788436_3 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 525.0
YYD3_k127_5788436_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 516.0
YYD3_k127_5788436_5 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 505.0
YYD3_k127_5788436_6 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 476.0
YYD3_k127_5788436_7 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 438.0
YYD3_k127_5788436_8 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 434.0
YYD3_k127_5788436_9 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 431.0
YYD3_k127_5797903_0 Ring hydroxylating alpha subunit (catalytic domain) K14748 - - 9.083e-214 670.0
YYD3_k127_5797903_1 COG4618 ABC-type protease lipase transport system, ATPase and permease components K16299 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 527.0
YYD3_k127_5797903_2 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 434.0
YYD3_k127_5797903_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 375.0
YYD3_k127_5797903_4 TIGRFAM type I secretion membrane fusion protein, HlyD family K02022,K12537 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 332.0
YYD3_k127_5797903_5 DNA polymerase III, delta' K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000195 225.0
YYD3_k127_5797903_6 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000006404 209.0
YYD3_k127_5797903_7 Ring hydroxylating beta subunit K16303 - 1.14.12.25 0.0000000000000000000000000000000000000001631 159.0
YYD3_k127_5797903_8 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.00000000000000000000000000000000000001842 145.0
YYD3_k127_5797903_9 Protein of unknown function (DUF1178) - - - 0.00000000000000000000000000000004524 133.0
YYD3_k127_5799191_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 562.0
YYD3_k127_5799191_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 507.0
YYD3_k127_5799191_2 PFAM aminotransferase, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 402.0
YYD3_k127_5799191_4 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000006744 160.0
YYD3_k127_5799191_5 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.000000000000000000000000000000000000000158 164.0
YYD3_k127_5799191_6 Transcriptional regulator - - - 0.00000000000000007327 87.0
YYD3_k127_5799191_7 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.0000000003053 61.0
YYD3_k127_5801029_0 Domain of unknown function (DUF3400) - - - 0.0 1703.0
YYD3_k127_5801029_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 6.472e-251 791.0
YYD3_k127_5801029_10 VanZ like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000167 281.0
YYD3_k127_5801029_11 PFAM ABC-2 type transporter K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000371 265.0
YYD3_k127_5801029_12 Alpha beta K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008989 244.0
YYD3_k127_5801029_13 - - - - 0.000000000000000000000000000000000000000000000000000008198 204.0
YYD3_k127_5801029_14 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000002465 199.0
YYD3_k127_5801029_15 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000000006274 186.0
YYD3_k127_5801029_16 Ferredoxin - - - 0.000000000000000000000000000000000000000000000001654 174.0
YYD3_k127_5801029_17 import inner membrane translocase subunit Tim44 - - - 0.0000000000000000000000000000000000000000000001774 180.0
YYD3_k127_5801029_18 PFAM Sterol-binding domain protein K03690 - - 0.0000000000000000000000000000000276 133.0
YYD3_k127_5801029_19 Protein of unknown function (DUF2782) - - - 0.0000000000000000004134 90.0
YYD3_k127_5801029_2 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 2.946e-206 653.0
YYD3_k127_5801029_20 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000001198 65.0
YYD3_k127_5801029_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 584.0
YYD3_k127_5801029_4 Belongs to the methyltransferase superfamily K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 443.0
YYD3_k127_5801029_5 PFAM ABC transporter related K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004496 414.0
YYD3_k127_5801029_6 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 379.0
YYD3_k127_5801029_7 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 363.0
YYD3_k127_5801029_8 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 335.0
YYD3_k127_5801029_9 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 328.0
YYD3_k127_5814388_0 Orn/Lys/Arg decarboxylase, C-terminal domain - - - 5.26e-197 623.0
YYD3_k127_5814388_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 3.912e-196 623.0
YYD3_k127_5814388_2 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000005945 243.0
YYD3_k127_5814388_3 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000000002728 145.0
YYD3_k127_5814388_4 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000001292 91.0
YYD3_k127_5842462_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 351.0
YYD3_k127_5842462_1 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002142 289.0
YYD3_k127_5842462_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001269 266.0
YYD3_k127_5842462_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000003658 159.0
YYD3_k127_5842462_4 nuclease K01174 - 3.1.31.1 0.00000000000000000000000000000000002491 140.0
YYD3_k127_5842462_5 serine threonine protein kinase - - - 0.0000000000000000000000000003298 119.0
YYD3_k127_586698_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 4.2e-322 995.0
YYD3_k127_586698_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 439.0
YYD3_k127_586698_2 Uncharacterized protein family, UPF0114 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001033 271.0
YYD3_k127_586698_3 - - - - 0.0000000000000145 75.0
YYD3_k127_587479_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 4.557e-242 756.0
YYD3_k127_587479_1 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 565.0
YYD3_k127_587479_10 PFAM Colicin V production protein K03558 - - 0.0000000000000000000000001513 117.0
YYD3_k127_587479_11 - - - - 0.00000000000000006566 88.0
YYD3_k127_587479_12 PFAM Sporulation domain protein K03749 - - 0.0000000000000001366 85.0
YYD3_k127_587479_13 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.00000000003256 63.0
YYD3_k127_587479_2 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003975 526.0
YYD3_k127_587479_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 480.0
YYD3_k127_587479_4 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 443.0
YYD3_k127_587479_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000483 288.0
YYD3_k127_587479_6 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000001027 244.0
YYD3_k127_587479_7 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000000000000000000001136 240.0
YYD3_k127_587479_8 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000009687 235.0
YYD3_k127_587479_9 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000002017 163.0
YYD3_k127_5884860_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 509.0
YYD3_k127_5884860_1 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007284 311.0
YYD3_k127_5884860_2 ROK family K00845,K00886 - 2.7.1.2,2.7.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 290.0
YYD3_k127_5884860_3 - - - - 0.00000000000000000000000000000003773 132.0
YYD3_k127_590454_0 Xylose isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000698 398.0
YYD3_k127_590454_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003966 385.0
YYD3_k127_590454_2 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 359.0
YYD3_k127_590454_3 Enoyl-CoA hydratase K16427 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016701,GO:0016702,GO:0042802,GO:0051213,GO:0055114 1.13.11.80 0.00000000000000000000000000000000000000000000001361 177.0
YYD3_k127_6011290_0 phosphoribosylamine-glycine ligase activity K01945,K01955 - 6.3.4.13,6.3.5.5 2.414e-207 651.0
YYD3_k127_6011290_1 FMN-dependent dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 319.0
YYD3_k127_6011290_2 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000146 198.0
YYD3_k127_6011290_3 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000006811 170.0
YYD3_k127_6011290_4 Tetratricopeptide repeat - - - 0.000000000000000000007271 104.0
YYD3_k127_6011290_5 Domain of unknown function (DUF4184) - - - 0.00000000000000000001032 103.0
YYD3_k127_6011290_6 ABC transporter - - - 0.0000000000000000006326 100.0
YYD3_k127_6011290_7 Virulence factor Mce family protein K02067 - - 0.0004037 52.0
YYD3_k127_6046402_0 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 543.0
YYD3_k127_6046402_1 Amidohydrolase K03392,K10220 - 4.1.1.45,4.2.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009409 526.0
YYD3_k127_6046402_2 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000001851 150.0
YYD3_k127_6046402_3 Putative beta-barrel porin 2 - - - 0.00004167 49.0
YYD3_k127_6046402_4 EF hand - - - 0.0001792 48.0
YYD3_k127_6046402_5 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.0007624 50.0
YYD3_k127_6064738_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 2.564e-243 773.0
YYD3_k127_6064738_1 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009363 475.0
YYD3_k127_6064738_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 384.0
YYD3_k127_6064738_3 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 375.0
YYD3_k127_6064738_4 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005869 283.0
YYD3_k127_6064738_5 membrane transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000003073 226.0
YYD3_k127_6064738_6 2-hydroxyacid dehydrogenase K12972 - 1.1.1.79,1.1.1.81 0.0000000000000000000001995 112.0
YYD3_k127_6064738_7 SnoaL-like domain - - - 0.0000000000000009213 87.0
YYD3_k127_6073795_0 General secretory system II protein E domain protein K02454,K02652,K12276 - - 0.0 1129.0
YYD3_k127_6073795_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 1.882e-242 787.0
YYD3_k127_6073795_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. K01120 - 3.1.4.17 2.404e-225 709.0
YYD3_k127_6073795_3 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 359.0
YYD3_k127_6073795_4 cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004956 314.0
YYD3_k127_6073795_5 CHASE2 K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000009708 176.0
YYD3_k127_6073795_6 pilus assembly protein major pilin PilA K02650 - - 0.0000000000000008756 78.0
YYD3_k127_6073795_7 CHASE2 K01768 - 4.6.1.1 0.00000000001422 70.0
YYD3_k127_6073795_8 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000002082 62.0
YYD3_k127_6073795_9 CHASE2 K01768 - 4.6.1.1 0.000001651 55.0
YYD3_k127_6083167_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 1.987e-246 770.0
YYD3_k127_6083167_1 Cytochrome P450 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 497.0
YYD3_k127_6083167_2 Ketopantoate reductase PanE/ApbA C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 427.0
YYD3_k127_6083167_3 Taurine catabolism dioxygenase TauD, TfdA family K03119,K22303 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 379.0
YYD3_k127_6083167_4 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003181 242.0
YYD3_k127_6083167_5 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000001708 127.0
YYD3_k127_6088389_0 Bacterial DNA polymerase III alpha subunit K14162 - 2.7.7.7 0.0 1272.0
YYD3_k127_6088389_1 Tripartite tricarboxylate transporter TctA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 616.0
YYD3_k127_6088389_10 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001907 267.0
YYD3_k127_6088389_11 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.0000000000000000000000000000000000000000000000003848 183.0
YYD3_k127_6088389_12 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000009477 181.0
YYD3_k127_6088389_13 cheY-homologous receiver domain - - - 0.000000000000000000000000000123 120.0
YYD3_k127_6088389_14 COG0457 FOG TPR repeat - - - 0.000000000000000000001151 102.0
YYD3_k127_6088389_15 PFAM Hpt domain protein - - - 0.0000000000000000003013 91.0
YYD3_k127_6088389_2 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 550.0
YYD3_k127_6088389_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 326.0
YYD3_k127_6088389_4 surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007313 321.0
YYD3_k127_6088389_5 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 320.0
YYD3_k127_6088389_6 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 321.0
YYD3_k127_6088389_7 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001387 291.0
YYD3_k127_6088389_8 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006282,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031668,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001020,GO:2001141 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000001405 256.0
YYD3_k127_6088389_9 adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000009288 258.0
YYD3_k127_6128054_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 385.0
YYD3_k127_6128054_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 290.0
YYD3_k127_6128054_2 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000007629 244.0
YYD3_k127_6128054_3 Protein of unknown function (DUF962) - - - 0.000000000000000000000000000000000000000008896 168.0
YYD3_k127_6181876_0 NnrS protein K07234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 359.0
YYD3_k127_6181876_1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21563 - - 0.000000000000000000000000000000000000000000000000000000008426 209.0
YYD3_k127_6181876_2 - - - - 0.00000000000000000000000000000000000000000000000000000003916 207.0
YYD3_k127_6181876_3 - - - - 0.00000000006735 67.0
YYD3_k127_6190388_0 Protein of unknown function (DUF1116) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 568.0
YYD3_k127_6190388_1 Soluble lytic murein transglycosylase L domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000932 565.0
YYD3_k127_6190388_2 CoA binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 457.0
YYD3_k127_6190388_3 epimerase dehydratase K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 313.0
YYD3_k127_6190388_4 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003311 238.0
YYD3_k127_6190388_5 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.00000000000000000000000000000000000000000000000000000000006469 213.0
YYD3_k127_6190388_6 Aminotransferase class-V K00839 - 2.6.1.112 0.00000000000000000000000000000000000672 138.0
YYD3_k127_6190388_7 Protein of unknown function (DUF2877) - - - 0.0000000000000000000000000000000003642 141.0
YYD3_k127_6210427_0 gluconolactonase K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005489 419.0
YYD3_k127_6210427_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007131 336.0
YYD3_k127_6210427_2 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 301.0
YYD3_k127_6210427_3 PFAM CHRD domain containing protein - - - 0.000000000000000000000000008901 111.0
YYD3_k127_622157_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 3.218e-267 840.0
YYD3_k127_622157_1 Flavin containing amine oxidoreductase - - - 6.058e-227 715.0
YYD3_k127_622157_10 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 293.0
YYD3_k127_622157_11 depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 299.0
YYD3_k127_622157_12 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 294.0
YYD3_k127_622157_13 Cation efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002332 238.0
YYD3_k127_622157_14 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000007229 231.0
YYD3_k127_622157_15 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000002005 243.0
YYD3_k127_622157_16 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000526 184.0
YYD3_k127_622157_17 membrane - - - 0.00000000000000000000000000000000000000000000000002647 183.0
YYD3_k127_622157_18 helix_turn_helix, mercury resistance K19591,K19592 - - 0.0000000000000000000000000000000000000000000000773 173.0
YYD3_k127_622157_19 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000359 71.0
YYD3_k127_622157_2 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 502.0
YYD3_k127_622157_3 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K05816,K10111,K10112 - 3.6.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 453.0
YYD3_k127_622157_4 Glycine cleavage T-protein C-terminal barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006848 451.0
YYD3_k127_622157_5 PFAM binding-protein-dependent transport systems inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 424.0
YYD3_k127_622157_6 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006268 420.0
YYD3_k127_622157_7 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 314.0
YYD3_k127_622157_8 transport system, periplasmic component K05813 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 304.0
YYD3_k127_622157_9 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 299.0
YYD3_k127_6274101_0 FtsX-like permease family K02004 - - 1.859e-225 724.0
YYD3_k127_6274101_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 415.0
YYD3_k127_6274101_2 Lipocalin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007052 364.0
YYD3_k127_6274101_3 Thioredoxin-like K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 335.0
YYD3_k127_6274101_4 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 316.0
YYD3_k127_6274101_5 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006027 282.0
YYD3_k127_6274101_6 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003707 274.0
YYD3_k127_6274101_7 Solute carrier family 35 - - - 0.0000000000000000000000000000000000000001614 161.0
YYD3_k127_6274101_8 Protein of unknown function (DUF3568) - - - 0.00000000000000000003366 101.0
YYD3_k127_6274101_9 Rubrerythrin - - - 0.0000000271 60.0
YYD3_k127_629640_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 1.928e-266 833.0
YYD3_k127_629640_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 434.0
YYD3_k127_629640_2 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 316.0
YYD3_k127_629640_3 Protein of unknown function (DUF962) - - - 0.000007621 56.0
YYD3_k127_632537_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1388.0
YYD3_k127_632537_1 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 2.054e-285 885.0
YYD3_k127_632537_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122 - 1.17.1.9 8.556e-204 638.0
YYD3_k127_632537_3 Belongs to the universal stress protein A family - - - 0.000000000000000000000006283 106.0
YYD3_k127_632537_4 membrane protein, terc - - - 0.00000000000000000001129 93.0
YYD3_k127_6332587_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 425.0
YYD3_k127_6332587_1 NADPH quinone oxidoreductase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000126 254.0
YYD3_k127_6332587_2 NMT1-like family K07080 - - 0.00000000000000000000000000003659 131.0
YYD3_k127_6332664_0 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 484.0
YYD3_k127_6332664_1 Putative metallopeptidase - - - 0.00000000000003708 82.0
YYD3_k127_6339992_0 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 4.697e-201 647.0
YYD3_k127_6339992_1 Isocitrate lyase K01637 - 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 314.0
YYD3_k127_6339992_2 integral membrane protein K02221 - - 0.000000000000000000000000000000000000000003276 163.0
YYD3_k127_6339992_3 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000004908 107.0
YYD3_k127_6339992_4 Belongs to the UPF0235 family K09131 - - 0.00000000000000002165 91.0
YYD3_k127_6344946_0 B12 binding domain K00548 - 2.1.1.13 0.0 1607.0
YYD3_k127_6344946_1 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 4.524e-197 638.0
YYD3_k127_6344946_10 TIGRFAM maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001181 261.0
YYD3_k127_6344946_11 Protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000167 232.0
YYD3_k127_6344946_12 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000005278 220.0
YYD3_k127_6344946_13 DNA recombination-mediator protein A K04096 - - 0.000000000000000000000000000000000000000000000000000001926 196.0
YYD3_k127_6344946_14 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000000000000000000005427 175.0
YYD3_k127_6344946_15 Thioesterase superfamily - - - 0.00000000000000000000000000308 116.0
YYD3_k127_6344946_16 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000003518 93.0
YYD3_k127_6344946_17 oxidoreductase FAD NAD(P)-binding domain protein K14581 - 1.18.1.7 0.0000000000000001258 84.0
YYD3_k127_6344946_2 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006451 409.0
YYD3_k127_6344946_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 404.0
YYD3_k127_6344946_4 Protocatechuate 3,4-dioxygenase K00449 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 359.0
YYD3_k127_6344946_5 PFAM Peptidoglycan-binding LysM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 335.0
YYD3_k127_6344946_6 Catalyzes the cycloisomerization of cis,cis-muconate K01857 - 5.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 318.0
YYD3_k127_6344946_7 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006418,GO:0006431,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019752,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005358 289.0
YYD3_k127_6344946_8 PFAM fumarylacetoacetate (FAA) hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001325 293.0
YYD3_k127_6344946_9 AMP-binding enzyme C-terminal domain K04110,K20458 - 6.2.1.25,6.2.1.27,6.2.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001226 296.0
YYD3_k127_6353195_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 4.78e-197 623.0
YYD3_k127_6353195_1 enoyl-CoA hydratase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 312.0
YYD3_k127_6353195_2 Metal binding domain of Ada K00567,K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000004061 234.0
YYD3_k127_6353195_3 (Hpt) domain - - - 0.00001306 51.0
YYD3_k127_6356282_0 UDP binding domain K02474 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 610.0
YYD3_k127_6356282_1 epimerase dehydratase K02473,K08679 - 5.1.3.6,5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008228 391.0
YYD3_k127_6356282_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006529 274.0
YYD3_k127_6356282_3 Glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000001138 250.0
YYD3_k127_6356282_4 polysaccharide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000002276 242.0
YYD3_k127_6356282_5 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000001805 206.0
YYD3_k127_6356282_6 O-Antigen ligase - - - 0.000000000000000000000000000000000000003699 163.0
YYD3_k127_635947_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K07678 - 2.7.13.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000508 253.0
YYD3_k127_635947_1 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002942 258.0
YYD3_k127_635947_2 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000002674 220.0
YYD3_k127_635947_3 ABC transporter substrate binding protein K01989 - - 0.00000000004284 64.0
YYD3_k127_6361579_0 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008418 333.0
YYD3_k127_6361579_1 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 325.0
YYD3_k127_6361579_2 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 300.0
YYD3_k127_6361579_3 asparaginase K13051 - 3.4.19.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007161 283.0
YYD3_k127_6361579_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001645 274.0
YYD3_k127_6361579_5 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000000000000000000000127 159.0
YYD3_k127_6361579_6 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000002779 147.0
YYD3_k127_6361579_7 Branched-chain amino acid transport system / permease component - - - 0.00000000000004605 73.0
YYD3_k127_6367758_0 4Fe-4S dicluster domain - - - 0.0 1182.0
YYD3_k127_6367758_1 Belongs to the IlvD Edd family - - - 4.627e-276 857.0
YYD3_k127_6367758_2 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 553.0
YYD3_k127_6367758_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 353.0
YYD3_k127_6367758_4 PFAM Bacterial protein of - - - 0.0000000000000000000000000000000000000000000000000000000006738 209.0
YYD3_k127_6367758_5 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000003154 173.0
YYD3_k127_6367758_6 - - - - 0.00000000000000000003706 96.0
YYD3_k127_6381110_0 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 507.0
YYD3_k127_6381110_1 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 409.0
YYD3_k127_6381110_10 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.000000000000000000000000000000000000000000000000000000000000000000000001482 260.0
YYD3_k127_6381110_11 - - - - 0.00000000000000000000000000000000000000000000000000000000000007962 226.0
YYD3_k127_6381110_12 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000005966 168.0
YYD3_k127_6381110_13 PFAM small multidrug resistance protein K11741 - - 0.000000000000000000000000000000000003345 139.0
YYD3_k127_6381110_2 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 409.0
YYD3_k127_6381110_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000683 400.0
YYD3_k127_6381110_4 ABC transporter K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 400.0
YYD3_k127_6381110_5 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 355.0
YYD3_k127_6381110_6 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 337.0
YYD3_k127_6381110_7 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 310.0
YYD3_k127_6381110_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K03793 - 1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003325 276.0
YYD3_k127_6381110_9 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000009509 259.0
YYD3_k127_6412425_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.0 1121.0
YYD3_k127_6412425_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 7.14e-207 653.0
YYD3_k127_6412425_2 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 555.0
YYD3_k127_6412425_3 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 432.0
YYD3_k127_6412425_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 310.0
YYD3_k127_6412425_5 low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000000000000000002046 229.0
YYD3_k127_6412425_6 Regulatory protein ArsR K03892 - - 0.00000000000000000000000000000001965 128.0
YYD3_k127_6412425_7 PFAM cytoplasmic chaperone TorD family protein - - - 0.00000000000000000000000006583 115.0
YYD3_k127_6412425_8 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000001855 90.0
YYD3_k127_6412425_9 Copper binding periplasmic protein CusF - - - 0.000006764 51.0
YYD3_k127_6424624_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 2.858e-263 822.0
YYD3_k127_6424624_1 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 1.074e-227 733.0
YYD3_k127_6424624_10 2-hydroxychromene-2-carboxylate isomerase K14584 - 5.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000001735 237.0
YYD3_k127_6424624_11 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000001079 193.0
YYD3_k127_6424624_12 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000007324 158.0
YYD3_k127_6424624_13 OsmC-like protein - - - 0.000000000000000000000000000000000000008664 151.0
YYD3_k127_6424624_14 transcriptional - - - 0.000000000000000000000000000000000005507 141.0
YYD3_k127_6424624_15 thiolester hydrolase activity K17362 - - 0.00000000000000000000000000017 125.0
YYD3_k127_6424624_16 Fe-S protein K06938 - - 0.000000000000002566 77.0
YYD3_k127_6424624_17 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000435 66.0
YYD3_k127_6424624_2 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 1.892e-198 631.0
YYD3_k127_6424624_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 604.0
YYD3_k127_6424624_4 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 495.0
YYD3_k127_6424624_5 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 464.0
YYD3_k127_6424624_6 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 451.0
YYD3_k127_6424624_7 Zn-dependent hydrolases including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 376.0
YYD3_k127_6424624_8 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 371.0
YYD3_k127_6424624_9 COG1024 Enoyl-CoA hydratase carnithine racemase K13766 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 299.0
YYD3_k127_6432923_0 Bacterial extracellular solute-binding protein K02027 - - 8.33e-207 651.0
YYD3_k127_6432923_1 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 454.0
YYD3_k127_6432923_2 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006487 387.0
YYD3_k127_6432923_3 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000696 312.0
YYD3_k127_6432923_4 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.00000000000000000000000000000000000000000000000000000000000000008589 228.0
YYD3_k127_6432923_5 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000002407 194.0
YYD3_k127_6432923_6 Helix-turn-helix XRE-family like proteins K21498 - - 0.000000000000000000000000000003988 121.0
YYD3_k127_6442457_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 4.231e-264 823.0
YYD3_k127_6442457_1 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 452.0
YYD3_k127_6442457_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 429.0
YYD3_k127_6442457_3 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004185 304.0
YYD3_k127_6442457_4 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 299.0
YYD3_k127_6442457_5 RNA methyltransferase K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000002029 216.0
YYD3_k127_6442457_6 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000000000000009418 160.0
YYD3_k127_6449329_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.004e-212 667.0
YYD3_k127_6449329_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007378 363.0
YYD3_k127_6449329_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 327.0
YYD3_k127_6449329_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001689 290.0
YYD3_k127_6449329_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000001634 202.0
YYD3_k127_6449329_5 Preprotein translocase subunit SecG K03075 - - 0.00000000000000000000000005882 114.0
YYD3_k127_6449329_6 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.000000000000000000000004584 106.0
YYD3_k127_6449329_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000001394 66.0
YYD3_k127_6461485_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 364.0
YYD3_k127_6461485_1 Amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 363.0
YYD3_k127_6461485_2 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000232 254.0
YYD3_k127_6461485_3 Sir2 family K12410 - - 0.000000000000000000000000000000000000000000000000000000000000006306 230.0
YYD3_k127_6461485_4 proline dipeptidase activity K01262 - 3.4.11.9 0.000000000000000000000000000000000000000002894 163.0
YYD3_k127_6461485_5 - - - - 0.000000000000000000000000000000002791 132.0
YYD3_k127_6464474_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 563.0
YYD3_k127_6464474_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 387.0
YYD3_k127_6464474_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 329.0
YYD3_k127_6464474_3 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000009157 260.0
YYD3_k127_6469228_0 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 529.0
YYD3_k127_6469228_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 409.0
YYD3_k127_6469228_2 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 366.0
YYD3_k127_6469228_3 PFAM amidohydrolase 2 K03392 - 4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 337.0
YYD3_k127_6469228_4 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818 319.0
YYD3_k127_6469228_5 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 325.0
YYD3_k127_6469228_6 COG0411 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.000000000000000000000000000000000002397 156.0
YYD3_k127_6469228_7 Domain of unknown function (DUF4189) - - - 0.000000000000000734 82.0
YYD3_k127_6469228_8 Tripartite tricarboxylate transporter family receptor - - - 0.0000695 46.0
YYD3_k127_6551256_0 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006448 601.0
YYD3_k127_6551256_1 TRAP dicarboxylate transporter K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 404.0
YYD3_k127_6551256_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004515 383.0
YYD3_k127_6551256_3 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000005963 225.0
YYD3_k127_6551256_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000002534 141.0
YYD3_k127_6551256_5 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.000000000003121 71.0
YYD3_k127_6620750_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 2.577e-195 616.0
YYD3_k127_6620750_1 Belongs to the TPP enzyme family K03336 - 3.7.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 471.0
YYD3_k127_6620750_10 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000002222 226.0
YYD3_k127_6620750_11 TIGRFAM riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000009191 211.0
YYD3_k127_6620750_12 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000001802 211.0
YYD3_k127_6620750_13 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000008604 203.0
YYD3_k127_6620750_14 Pfam:UPF0118 - - - 0.00000000000000000000000000000000000000000000000000000001157 211.0
YYD3_k127_6620750_15 protein conserved in bacteria containing a divergent form of TPR repeats - - - 0.000000000000000000000000000000000000000003775 167.0
YYD3_k127_6620750_16 Molybdopterin-guanine dinucleotide biosynthesis protein MobA K07141 - 2.7.7.76 0.0000000000000000000000000000000000000001122 169.0
YYD3_k127_6620750_17 - - - - 0.000000000000003574 80.0
YYD3_k127_6620750_18 SPW repeat - - - 0.0000002613 61.0
YYD3_k127_6620750_19 Protein of unknown function (DUF2799) - - - 0.00005964 49.0
YYD3_k127_6620750_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 430.0
YYD3_k127_6620750_20 Protein of unknown function (DUF2799) - - - 0.00009995 51.0
YYD3_k127_6620750_3 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 415.0
YYD3_k127_6620750_4 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 413.0
YYD3_k127_6620750_5 histidine kinase HAMP region domain protein K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 351.0
YYD3_k127_6620750_6 Oxidoreductase family, C-terminal alpha beta domain K00010 - 1.1.1.18,1.1.1.369 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005767 312.0
YYD3_k127_6620750_7 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003408 265.0
YYD3_k127_6620750_8 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000001341 244.0
YYD3_k127_6620750_9 carbon monoxide dehydrogenase K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000001524 233.0
YYD3_k127_6641497_0 FAD dependent oxidoreductase - - - 5.738e-207 653.0
YYD3_k127_6641497_1 Polysaccharide pyruvyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 426.0
YYD3_k127_6641497_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 390.0
YYD3_k127_6641497_3 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000002564 128.0
YYD3_k127_6641497_4 - - - - 0.0000000000000006895 81.0
YYD3_k127_6646510_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 1.794e-220 707.0
YYD3_k127_6646510_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 552.0
YYD3_k127_6646510_2 PFAM ADP-ribosylation Crystallin J1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 395.0
YYD3_k127_6646510_3 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000006258 249.0
YYD3_k127_6646510_4 Protein chain release factor B K15034 - - 0.00000000000000000000000000000000000000000001197 168.0
YYD3_k127_6649424_0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity K01955 - 6.3.5.5 1.925e-309 964.0
YYD3_k127_6649424_1 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 443.0
YYD3_k127_6649424_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000001103 169.0
YYD3_k127_6649424_3 Right handed beta helix region - - - 0.0000000000000000000000000000000000000003379 162.0
YYD3_k127_6650496_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01584 - 4.1.1.19 1.395e-312 972.0
YYD3_k127_6650496_1 Predicted Permease Membrane Region - - - 1.461e-254 796.0
YYD3_k127_6650496_2 Gram-negative porin - - - 0.000000000000000000000000000000000000000000000000000000000000001472 242.0
YYD3_k127_6655106_0 ABC transporter permease K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009531 302.0
YYD3_k127_6655106_1 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001596 276.0
YYD3_k127_6655106_2 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000003156 241.0
YYD3_k127_6655106_3 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.0000000000000000000000000000000000000001737 162.0
YYD3_k127_6655106_4 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000009462 125.0
YYD3_k127_6655490_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 6.762e-259 804.0
YYD3_k127_6655490_1 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 591.0
YYD3_k127_6655490_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000064 427.0
YYD3_k127_6655490_3 Histidine kinase K07641 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009472 371.0
YYD3_k127_6655490_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 314.0
YYD3_k127_6655490_5 Two component transcriptional regulator, winged helix family K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 316.0
YYD3_k127_6655490_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.00000000000000000000000000000000000000000000008585 187.0
YYD3_k127_6655490_7 Sortase family K07284 - 3.4.22.70 0.000000000000000000000000000000000000000000001102 173.0
YYD3_k127_6659447_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K04116 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 529.0
YYD3_k127_6659447_1 amidohydrolase K03392,K07045 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003022 395.0
YYD3_k127_6659447_2 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003 260.0
YYD3_k127_6659447_3 COG4177 ABC-type branched-chain amino acid transport system, permease component - - - 0.000000000000000000000000000000000000000000000000000000213 205.0
YYD3_k127_6659447_4 DGC domain - - - 0.000000000000000000000000000000000000000001884 161.0
YYD3_k127_6659447_5 ferredoxin - - - 0.000000000000000000000000000000009444 131.0
YYD3_k127_6659447_6 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000001367 106.0
YYD3_k127_6659447_7 Short C-terminal domain K08982 - - 0.000000000000001389 79.0
YYD3_k127_6659447_8 Protein of unknown function (DUF2892) - - - 0.0000000000003093 75.0
YYD3_k127_6659447_9 Pfam Hemerythrin HHE - - - 0.00000008557 61.0
YYD3_k127_6659998_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1093.0
YYD3_k127_6659998_1 EamA-like transporter family - - - 0.0000000000000000000000000008322 121.0
YYD3_k127_6660430_0 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007601 415.0
YYD3_k127_6660430_1 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006273 254.0
YYD3_k127_6660430_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000000000000000000005073 256.0
YYD3_k127_6660430_3 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000879 76.0
YYD3_k127_6686155_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1087.0
YYD3_k127_6686155_1 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 5.223e-297 941.0
YYD3_k127_6686155_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 309.0
YYD3_k127_6686155_3 acetoacetyl-CoA K01907 - 6.2.1.16 0.000000004474 59.0
YYD3_k127_6706979_0 Tripartite tricarboxylate transporter TctA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 571.0
YYD3_k127_6706979_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 484.0
YYD3_k127_6706979_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 404.0
YYD3_k127_6706979_3 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009047 368.0
YYD3_k127_6706979_4 Dihydrodipicolinate synthetase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 335.0
YYD3_k127_6706979_5 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 308.0
YYD3_k127_6706979_6 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000001903 237.0
YYD3_k127_6706979_7 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000004617 130.0
YYD3_k127_6714861_0 DNA ligase K01971 - 6.5.1.1 0.0 1259.0
YYD3_k127_6714861_1 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 589.0
YYD3_k127_6714861_10 Protein of unknown function (DUF2914) - - - 0.000000000001421 76.0
YYD3_k127_6714861_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 493.0
YYD3_k127_6714861_3 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009805 489.0
YYD3_k127_6714861_4 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 428.0
YYD3_k127_6714861_5 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 409.0
YYD3_k127_6714861_6 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 357.0
YYD3_k127_6714861_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000007176 223.0
YYD3_k127_6714861_8 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000005257 129.0
YYD3_k127_6714861_9 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02054 - - 0.0000000000007521 78.0
YYD3_k127_6716920_0 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000001319 245.0
YYD3_k127_6716920_1 Domain of unknown function DUF108 K06989 - 1.4.1.21 0.000000000000000000000000000000000000000000000000000000000000002983 228.0
YYD3_k127_6716920_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000000000000000000000000000001741 221.0
YYD3_k127_6716920_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000000000000000000000000000000002075 170.0
YYD3_k127_6717370_0 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 419.0
YYD3_k127_6717370_1 - - - - 0.000000000000000000000000000000000000000000000000000000004249 220.0
YYD3_k127_6717370_2 Prokaryotic N-terminal methylation motif - - - 0.0000000000000000000000000000000000000000000000000004348 195.0
YYD3_k127_6717370_4 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000006494 157.0
YYD3_k127_6717370_5 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000001879 113.0
YYD3_k127_6717370_6 Prepilin-type N-terminal cleavage methylation domain - - - 0.00000000000000000000001238 105.0
YYD3_k127_6717370_7 - - - - 0.00000000003684 76.0
YYD3_k127_6746901_0 Hydantoinase B/oxoprolinase K01469 - 3.5.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 595.0
YYD3_k127_6746901_1 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 577.0
YYD3_k127_6746901_10 transport system small permease component - - - 0.00000000000000000000000000000000000000000000004778 174.0
YYD3_k127_6746901_11 pathogenesis - - - 0.0000000000000000000000000000000000000000007481 170.0
YYD3_k127_6746901_12 IA, variant 3 K07025,K20866 - 3.1.3.10 0.0000000002398 70.0
YYD3_k127_6746901_2 Fad dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003219 466.0
YYD3_k127_6746901_3 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009701 443.0
YYD3_k127_6746901_4 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 434.0
YYD3_k127_6746901_5 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 351.0
YYD3_k127_6746901_6 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 338.0
YYD3_k127_6746901_7 Sugar (and other) transporter K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000002233 237.0
YYD3_k127_6746901_8 Domain of unknown function (DUF1835) - - - 0.000000000000000000000000000000000000000000000000002611 198.0
YYD3_k127_6746901_9 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000001074 181.0
YYD3_k127_6757600_0 Multicopper oxidase K22348 - 1.16.3.3 3.936e-226 707.0
YYD3_k127_6757600_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 506.0
YYD3_k127_6757600_2 Copper binding proteins, plastocyanin/azurin family - - - 0.00000000000000000000000000009048 128.0
YYD3_k127_6757600_3 Domain of unknown function (DUF4396) - - - 0.000000001667 58.0
YYD3_k127_6765616_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 616.0
YYD3_k127_6765616_1 Universal stress protein family - - - 0.000000000000000000000000000000000000000132 157.0
YYD3_k127_6765616_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000003053 61.0
YYD3_k127_6800591_0 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007936 388.0
YYD3_k127_6800591_1 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 375.0
YYD3_k127_6800591_2 cytochrome c oxidase (Subunit II) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003871 250.0
YYD3_k127_6800591_3 - - - - 0.00000000000269 69.0
YYD3_k127_6800591_4 Hemerythrin HHE cation binding domain - - - 0.0000002026 59.0
YYD3_k127_6806566_0 TIGRFAM ATP-dependent Clp protease ATP-binding subunit clpA K03694 - - 0.0 1180.0
YYD3_k127_6806566_1 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000003137 162.0
YYD3_k127_6806566_2 Cold shock K03704 - - 0.00000000000000000000000000000000002392 135.0
YYD3_k127_6806566_3 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000008491 89.0
YYD3_k127_6847068_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.703e-237 741.0
YYD3_k127_6847068_1 Mo-co oxidoreductase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004714 278.0
YYD3_k127_6847068_2 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000001047 195.0
YYD3_k127_6847068_3 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000000009433 188.0
YYD3_k127_6847068_4 membrane protein domain - - - 0.00000000000000000000000000000000000000000000008439 192.0
YYD3_k127_6847068_5 Cytochrome c, class I K05301 - 1.8.2.1 0.000000000000000000000000000000002143 136.0
YYD3_k127_6847068_6 oxidase, subunit II - - - 0.000000000000000000005169 93.0
YYD3_k127_6847068_7 PFAM Uncharacterised protein family UPF0150 - - - 0.00000000001984 66.0
YYD3_k127_686518_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 9.234e-253 797.0
YYD3_k127_686518_1 biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 334.0
YYD3_k127_686518_2 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000598 298.0
YYD3_k127_686518_3 Cytochrome c K17223 - - 0.0000000000000000000000000000000000000000000000000009533 194.0
YYD3_k127_686518_4 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000662 183.0
YYD3_k127_686518_5 Sulfur oxidation protein SoxY K17226 - - 0.00000000000000000000000000000000000002195 149.0
YYD3_k127_686518_6 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000003779 147.0
YYD3_k127_686518_7 Sulphur oxidation protein SoxZ K17227 - - 0.000000000000000000000005153 104.0
YYD3_k127_692889_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1257.0
YYD3_k127_692889_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000001035 262.0
YYD3_k127_692889_2 Belongs to the peptidase M16 family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000007244 111.0
YYD3_k127_699512_0 Insulinase (Peptidase family M16) K07263 - - 1.642e-253 808.0
YYD3_k127_699512_1 Redoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000002836 246.0
YYD3_k127_699512_2 Branched-chain amino acid permease - - - 0.000000000000000000000000000000000000000000000004021 183.0
YYD3_k127_699512_3 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000002445 103.0
YYD3_k127_699512_4 Branched-chain amino acid transport protein (AzlD) - - - 0.00000004844 62.0
YYD3_k127_776905_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 426.0
YYD3_k127_776905_1 Histidine kinase-like ATPases - - - 0.00000000000000007795 81.0
YYD3_k127_81058_0 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 512.0
YYD3_k127_81058_1 Belongs to the UPF0502 family K09915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007761 282.0
YYD3_k127_81058_2 Benzoate membrane transport protein K05782 - - 0.0000000000000000000000000000000000000000000000000000000000007695 217.0
YYD3_k127_81058_3 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.0000000000000000000000001567 113.0
YYD3_k127_841013_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly - - - 0.0 1229.0
YYD3_k127_862363_0 Tripartite tricarboxylate transporter TctA family - - - 1.245e-211 668.0
YYD3_k127_862363_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007396 546.0
YYD3_k127_862363_2 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K05825 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 394.0
YYD3_k127_862363_3 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 368.0
YYD3_k127_862363_4 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000027 258.0
YYD3_k127_862363_5 [2Fe-2S] binding domain K00256,K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000007236 227.0
YYD3_k127_862363_6 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000009045 132.0
YYD3_k127_862363_7 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000283 131.0
YYD3_k127_8661_0 Receptor family ligand binding region - - - 2.109e-212 666.0
YYD3_k127_8661_1 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 360.0
YYD3_k127_8661_10 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0005206 47.0
YYD3_k127_8661_2 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000000000000000000001835 229.0
YYD3_k127_8661_3 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.0000000000000000000000000000000000000000000000000000003091 204.0
YYD3_k127_8661_4 L-2-amino-thiazoline-4-carboxylic acid hydrolase - - - 0.0000000000000000000000000000000000000000000000007712 179.0
YYD3_k127_8661_5 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000645 162.0
YYD3_k127_8661_6 methyltransferase - - - 0.00000000000000000000000000000000000007287 149.0
YYD3_k127_8661_7 Phosphatidylethanolamine-binding protein K06910 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000002459 148.0
YYD3_k127_8661_8 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000002595 95.0
YYD3_k127_8661_9 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000634 82.0
YYD3_k127_868759_0 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 454.0
YYD3_k127_868759_1 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000009237 124.0
YYD3_k127_868759_2 short-chain dehydrogenase - - - 0.000000000000000000000006727 101.0
YYD3_k127_869502_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004947 472.0
YYD3_k127_869502_1 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000001284 174.0
YYD3_k127_869502_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000496 83.0
YYD3_k127_873652_0 PFAM DNA primase small subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 564.0
YYD3_k127_873652_1 ATP dependent DNA ligase C terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008425 432.0
YYD3_k127_873652_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 421.0
YYD3_k127_873652_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 351.0
YYD3_k127_873652_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000001496 234.0
YYD3_k127_873652_5 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000000000001063 131.0
YYD3_k127_873652_6 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000006841 128.0
YYD3_k127_873652_7 Alpha/beta hydrolase family K07020 - - 0.000000000000000000000000000001237 126.0
YYD3_k127_873652_8 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000008355 102.0
YYD3_k127_878804_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 8.827e-247 771.0
YYD3_k127_878804_1 catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-acp K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 1.595e-196 619.0
YYD3_k127_878804_10 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000006818 210.0
YYD3_k127_878804_11 TIGRFAM RNA polymerase sigma factor RpoE K03088 - - 0.000000000000000000000000000000000000001946 149.0
YYD3_k127_878804_12 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000003204 135.0
YYD3_k127_878804_13 rieske 2fe-2s - - - 0.000000000000000000000000000000001134 135.0
YYD3_k127_878804_14 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.0000000000000000000000003769 114.0
YYD3_k127_878804_15 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000004658 102.0
YYD3_k127_878804_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 442.0
YYD3_k127_878804_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 429.0
YYD3_k127_878804_4 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 394.0
YYD3_k127_878804_5 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 381.0
YYD3_k127_878804_6 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 348.0
YYD3_k127_878804_7 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007934 332.0
YYD3_k127_878804_8 S-adenosylmethionine-dependent methyltransferase, YraL family K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000002497 230.0
YYD3_k127_878804_9 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000002564 228.0
YYD3_k127_883359_0 MlrC C-terminus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006301 381.0
YYD3_k127_883359_1 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.00000000000000000000000000000000000000000006496 161.0
YYD3_k127_883359_2 Fe-S assembly protein IscX - - - 0.0000000000000000000000000006067 113.0
YYD3_k127_889264_0 Cytochrome b(N-terminal)/b6/petB - - - 9.672e-227 718.0
YYD3_k127_889264_1 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 513.0
YYD3_k127_889264_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 305.0
YYD3_k127_889264_3 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000005297 237.0
YYD3_k127_889264_4 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000002156 230.0
YYD3_k127_889264_5 PFAM electron transport protein SCO1 SenC K07152 - - 0.000000000000000000000000000000000000000000000000000000000000005937 230.0
YYD3_k127_889264_6 - - - - 0.000000000000000000000000001277 129.0
YYD3_k127_895318_0 PFAM AMP-dependent synthetase and ligase K00666,K01897 - 6.2.1.3 4.139e-209 664.0
YYD3_k127_895318_1 Phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 505.0
YYD3_k127_895318_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007456 398.0
YYD3_k127_895318_3 phosphate transport regulator K07220 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004224 278.0
YYD3_k127_895318_4 protein conserved in bacteria K09796 - - 0.000000000000000000000000000005724 125.0
YYD3_k127_905702_0 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000003226 235.0
YYD3_k127_905702_1 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000002749 143.0
YYD3_k127_905702_2 - - - - 0.00000000000000007088 89.0
YYD3_k127_920653_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 7.625e-215 674.0
YYD3_k127_920653_1 His Kinase A (phosphoacceptor) domain - - - 4.343e-200 656.0
YYD3_k127_920653_10 Sterol carrier protein - - - 0.00000000000000000000000008257 110.0
YYD3_k127_920653_12 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.000000000000679 76.0
YYD3_k127_920653_13 membrane - - - 0.00000004774 55.0
YYD3_k127_920653_14 ribosome binding - - - 0.0000001691 59.0
YYD3_k127_920653_15 Protein of unknown function (DUF805) - - - 0.000001979 49.0
YYD3_k127_920653_2 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 612.0
YYD3_k127_920653_3 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 586.0
YYD3_k127_920653_4 CoA-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 576.0
YYD3_k127_920653_5 PFAM MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 506.0
YYD3_k127_920653_6 aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 467.0
YYD3_k127_920653_7 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 394.0
YYD3_k127_920653_8 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 359.0
YYD3_k127_920653_9 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001437 292.0
YYD3_k127_932613_0 Acyl-CoA dehydrogenase, C-terminal domain K06446 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007363 557.0
YYD3_k127_932613_1 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 471.0
YYD3_k127_932613_2 binding-protein-dependent transport systems inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 346.0
YYD3_k127_932613_3 TIGRFAM HAD-superfamily subfamily IB hydrolase, TIGR01490 - - - 0.000000000000000000000000000000000000000000000000000000000000001061 228.0
YYD3_k127_932613_4 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000002594 136.0
YYD3_k127_932613_5 Heat shock 70 kDa protein K04043 - - 0.00000000000000000000000000256 115.0
YYD3_k127_933666_0 LUD domain K18929 - - 5.795e-221 705.0
YYD3_k127_933666_1 Pyruvate:ferredoxin oxidoreductase core domain II K18355 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000637 614.0
YYD3_k127_933666_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K18356 - 1.2.1.58,1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 541.0
YYD3_k127_933666_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007914 351.0
YYD3_k127_933666_4 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008697 256.0
YYD3_k127_933666_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K18357 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000003102 254.0
YYD3_k127_933666_6 LUD domain K00782 - - 0.000000000000000000000000000000000000000000000001097 191.0
YYD3_k127_933666_7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000001426 52.0
YYD3_k127_942535_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 2215.0
YYD3_k127_942535_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007104 451.0
YYD3_k127_942535_2 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000005452 193.0
YYD3_k127_942535_3 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000008645 113.0
YYD3_k127_959529_0 PFAM glycoside hydrolase 15-related - - - 7.912e-235 740.0
YYD3_k127_959529_1 in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence K06020 GO:0003674,GO:0003824,GO:0005488,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:2000112,GO:2000113 3.6.3.25 5.019e-217 686.0
YYD3_k127_959529_2 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 494.0
YYD3_k127_959529_3 Domain present in PSD-95, Dlg, and ZO-1/2. K08070 - 1.3.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006506 456.0
YYD3_k127_977064_0 Methionine synthase K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 472.0
YYD3_k127_977064_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999,K11959 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 456.0
YYD3_k127_977064_10 Domain of unknown function (DUF4383) - - - 0.000000000000000000000000000000000002225 144.0
YYD3_k127_977064_11 Diguanylate cyclase - - - 0.000000000000000000000000000001109 129.0
YYD3_k127_977064_12 - - - - 0.000000000000000000000000003271 111.0
YYD3_k127_977064_13 CsbD-like - - - 0.00000000000000000000000002725 108.0
YYD3_k127_977064_14 response regulator receiver - - - 0.0000000000000000000000419 104.0
YYD3_k127_977064_15 - - - - 0.000000000000000001655 91.0
YYD3_k127_977064_16 Protein of unknown function (DUF1328) - - - 0.0000000000001888 71.0
YYD3_k127_977064_17 SMART Transport-associated and nodulation region K04065 - - 0.0000000002954 67.0
YYD3_k127_977064_18 BON domain K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.0001912 48.0
YYD3_k127_977064_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000674 432.0
YYD3_k127_977064_3 Branched-chain amino acid transport system permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 392.0
YYD3_k127_977064_4 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 376.0
YYD3_k127_977064_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 305.0
YYD3_k127_977064_6 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 297.0
YYD3_k127_977064_7 branched-chain amino acid K01995,K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 295.0
YYD3_k127_977064_8 Amidohydrolase K03392 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000005252 251.0
YYD3_k127_977064_9 Domain of unknown function (DUF4383) - - - 0.0000000000000000000000000000000000000007963 156.0
YYD3_k127_987640_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 3.62e-314 975.0
YYD3_k127_987640_1 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 352.0
YYD3_k127_987640_2 Methyl-transferase K18912 - 1.14.99.50 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 354.0
YYD3_k127_987640_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000584 287.0
YYD3_k127_987640_4 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000003136 193.0
YYD3_k127_987640_5 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.000000000000000000000000000000000000000001984 163.0
YYD3_k127_987640_6 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000002417 127.0
YYD3_k127_992934_0 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 506.0
YYD3_k127_992934_1 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 306.0
YYD3_k127_992934_2 haloacid dehalogenase-like hydrolase - - - 0.0000000000000002626 79.0
YYD3_k127_992934_3 SMART Transport-associated and nodulation region K04065 - - 0.0000001203 61.0
YYD3_k127_992934_4 EF hand - - - 0.0001643 51.0