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Overview

ID MAG04646
Name YYD3_bin.13
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Blastocatellia
Order Pyrinomonadales
Family Pyrinomonadaceae
Genus PSRF01
Species
Assembly information
Completeness (%) 94.31
Contamination (%) 0.83
GC content (%) 53.0
N50 (bp) 17,408
Genome size (bp) 5,392,510

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes4272

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1014232_0 Serves to protect cells from the toxic effects of hydrogen peroxide K03781 - 1.11.1.6 0.0 1009.0
YYD3_k127_1014232_1 PBS lyase HEAT-like repeat - - - 3.146e-256 816.0
YYD3_k127_1014232_10 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003925 401.0
YYD3_k127_1014232_11 Methyltransferase, chemotaxis proteins K00575,K13486 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 336.0
YYD3_k127_1014232_12 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 338.0
YYD3_k127_1014232_13 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 341.0
YYD3_k127_1014232_14 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372,K02567 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009304 306.0
YYD3_k127_1014232_15 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 305.0
YYD3_k127_1014232_16 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000003849 247.0
YYD3_k127_1014232_17 CheC inhibitor of MCP methylation K03410 - - 0.00000000000000000000000000000000000000000000000000000000000000000001312 238.0
YYD3_k127_1014232_18 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000008956 236.0
YYD3_k127_1014232_19 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000000000000003438 235.0
YYD3_k127_1014232_2 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 3.547e-247 790.0
YYD3_k127_1014232_20 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000004781 229.0
YYD3_k127_1014232_21 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000000000000000000007485 197.0
YYD3_k127_1014232_22 Protein of unknown function (DUF1003) - - - 0.000000000000000000000000000000000000000000000000000001055 199.0
YYD3_k127_1014232_23 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000001733 201.0
YYD3_k127_1014232_24 long-chain fatty acid transport protein - - - 0.00000000000000000000000000000000000000000000000006586 189.0
YYD3_k127_1014232_25 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000003597 188.0
YYD3_k127_1014232_26 PFAM OsmC family protein K04063 - - 0.000000000000000000000000000000000000000000000005886 176.0
YYD3_k127_1014232_27 PFAM Nickel cobalt transporter, high-affinity - - - 0.000000000000000000000000000000000000000000000009092 181.0
YYD3_k127_1014232_28 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000006505 172.0
YYD3_k127_1014232_29 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000001314 171.0
YYD3_k127_1014232_3 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 1.729e-194 630.0
YYD3_k127_1014232_30 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000003107 166.0
YYD3_k127_1014232_31 helix_turn_helix multiple antibiotic resistance protein K15973 - - 0.0000000000000000000000000000000000000001149 156.0
YYD3_k127_1014232_32 Response regulator receiver domain K03413 - - 0.000000000000000000000000000000000000003404 149.0
YYD3_k127_1014232_33 oxidoreductase activity, acting on diphenols and related substances as donors - - - 0.0000000000000000000000000000000008357 137.0
YYD3_k127_1014232_34 TIGRFAM VWFA-related Acidobacterial domain - - - 0.00000000000000000000000000000002623 145.0
YYD3_k127_1014232_35 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000002343 121.0
YYD3_k127_1014232_36 phosphohistidine phosphatase K08296 - - 0.00000000000000000000000000003375 122.0
YYD3_k127_1014232_37 Protein of unknown function (DUF3565) - - - 0.00000000000000000000002128 101.0
YYD3_k127_1014232_38 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000004534 117.0
YYD3_k127_1014232_4 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 531.0
YYD3_k127_1014232_40 PFAM CHAD domain containing protein - - - 0.000000000000000000003699 105.0
YYD3_k127_1014232_41 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000001955 86.0
YYD3_k127_1014232_42 Psort location Cytoplasmic, score - - - 0.000000000000001252 85.0
YYD3_k127_1014232_43 CHRD domain - - - 0.0000000000003823 84.0
YYD3_k127_1014232_45 Domain of unknown function DUF11 - - - 0.000001883 62.0
YYD3_k127_1014232_47 Planctomycete cytochrome C - - - 0.0007338 47.0
YYD3_k127_1014232_5 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 550.0
YYD3_k127_1014232_6 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 476.0
YYD3_k127_1014232_7 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 443.0
YYD3_k127_1014232_8 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 436.0
YYD3_k127_1014232_9 Voltage-dependent anion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 416.0
YYD3_k127_1032369_0 guanyl-nucleotide exchange factor activity K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 403.0
YYD3_k127_1032369_1 Large extracellular alpha-helical protein K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 371.0
YYD3_k127_1032369_2 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 349.0
YYD3_k127_1032369_3 ABC transporter, ATP-binding protein K20459 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 314.0
YYD3_k127_1032369_4 phospholipase Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000006619 201.0
YYD3_k127_1032369_5 GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000002242 186.0
YYD3_k127_1032369_6 ABC-2 family transporter protein - - - 0.00000000000000000000000000000003674 136.0
YYD3_k127_1032369_7 - - - - 0.000002599 50.0
YYD3_k127_1036793_0 TonB-dependent Receptor Plug K16090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006424 479.0
YYD3_k127_1036793_1 pkhd-type hydroxylase K07336 GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0033554,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 355.0
YYD3_k127_1036793_2 Iron-regulated membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000233 243.0
YYD3_k127_1036793_3 PFAM AMP-dependent synthetase and ligase K00666,K01897,K12508 - 6.2.1.3,6.2.1.34 0.000000000009485 69.0
YYD3_k127_104915_0 Protein of unknown function (DUF445) - - - 0.0000000000000000000000000000001663 141.0
YYD3_k127_104915_1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000001634 113.0
YYD3_k127_104915_2 Putative auto-transporter adhesin, head GIN domain - - - 0.000000000000000000000000001715 121.0
YYD3_k127_104915_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000001058 102.0
YYD3_k127_1051794_0 Amidohydrolase family K01464 - 3.5.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 579.0
YYD3_k127_1051794_1 Putative glucoamylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000871 560.0
YYD3_k127_1051794_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 301.0
YYD3_k127_1051794_11 Alpha-aspartyl dipeptidase-like K05995 GO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:0140096,GO:1901564 3.4.13.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000937 286.0
YYD3_k127_1051794_12 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001371 286.0
YYD3_k127_1051794_13 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000004142 226.0
YYD3_k127_1051794_14 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000002133 218.0
YYD3_k127_1051794_15 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0050896 4.4.1.5 0.000000000000000000000000000000000000000000145 165.0
YYD3_k127_1051794_16 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000003643 162.0
YYD3_k127_1051794_18 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000107 164.0
YYD3_k127_1051794_19 Glycosyl transferase, family 2 K07011 - - 0.00000000000000000000000000000000000000007525 164.0
YYD3_k127_1051794_2 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 562.0
YYD3_k127_1051794_20 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000000000000000000008843 157.0
YYD3_k127_1051794_21 Protein of unknown function (DUF1440) K08996 - - 0.00000000000000000000000000004969 123.0
YYD3_k127_1051794_22 PFAM Iron permease FTR1 - - - 0.000000000000000000001268 107.0
YYD3_k127_1051794_23 META domain - - - 0.0000000000000001118 91.0
YYD3_k127_1051794_24 Protein of unknown function (DUF1176) - - - 0.0000000000000004976 89.0
YYD3_k127_1051794_25 low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.0000000000408 63.0
YYD3_k127_1051794_26 Protein of unknown function (DUF3108) - - - 0.0000000006533 72.0
YYD3_k127_1051794_27 Protein of unknown function (DUF3108) - - - 0.0000001319 64.0
YYD3_k127_1051794_28 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000002018 53.0
YYD3_k127_1051794_29 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.00009831 53.0
YYD3_k127_1051794_3 Belongs to the aldehyde dehydrogenase family K22187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009906 509.0
YYD3_k127_1051794_4 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 464.0
YYD3_k127_1051794_5 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 416.0
YYD3_k127_1051794_6 AMP-binding enzyme C-terminal domain K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004473 412.0
YYD3_k127_1051794_7 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 397.0
YYD3_k127_1051794_8 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 356.0
YYD3_k127_1051794_9 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007903 350.0
YYD3_k127_1090759_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702,K08999 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009380,GO:0009628,GO:0032991,GO:0042802,GO:0044424,GO:0044464,GO:0050896,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 1.851e-266 835.0
YYD3_k127_1090759_1 PFAM FAD linked oxidase domain protein K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008117 502.0
YYD3_k127_1090759_2 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000004661 149.0
YYD3_k127_1108410_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 557.0
YYD3_k127_1108410_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 542.0
YYD3_k127_1108410_2 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006749 533.0
YYD3_k127_1108410_3 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 483.0
YYD3_k127_1108410_4 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 307.0
YYD3_k127_1108410_5 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000001245 216.0
YYD3_k127_1108410_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000003062 171.0
YYD3_k127_1108410_7 Anti-sigma-K factor rskA - - - 0.000000000000000000000001215 113.0
YYD3_k127_1108410_8 Uncharacterized protein family UPF0016 - - - 0.0008741 42.0
YYD3_k127_1153152_0 Carboxymethylenebutenolidase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006676 471.0
YYD3_k127_1153152_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 294.0
YYD3_k127_1153152_2 amino acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003146 288.0
YYD3_k127_1153152_3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000005068 184.0
YYD3_k127_1162199_0 peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 407.0
YYD3_k127_1162199_1 Phosphoenolpyruvate phosphomutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003758 350.0
YYD3_k127_1162199_2 PFAM Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 350.0
YYD3_k127_1162199_3 shikimate kinase activity K00891,K13829 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71,4.2.3.4 0.000000000000000000004852 97.0
YYD3_k127_1163490_0 cellulose binding - - - 0.0 1035.0
YYD3_k127_1163490_1 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 414.0
YYD3_k127_1163490_10 Membrane - - - 0.00000000000000000000000000000000000000000000000000000002763 203.0
YYD3_k127_1163490_11 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000000003101 157.0
YYD3_k127_1163490_12 oxidoreductase activity - - - 0.00000000000000000000000000000000000002235 165.0
YYD3_k127_1163490_13 Sigma-70, region 4 - - - 0.0000000000000000000000000000003497 130.0
YYD3_k127_1163490_14 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000002679 123.0
YYD3_k127_1163490_15 Response regulator receiver - - - 0.000000000000000000000131 102.0
YYD3_k127_1163490_16 PFAM Adenylate cyclase K05873 - 4.6.1.1 0.0000000000000000000002715 104.0
YYD3_k127_1163490_18 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000466 96.0
YYD3_k127_1163490_19 ATP-independent chaperone mediated protein folding K06006 - - 0.00000144 57.0
YYD3_k127_1163490_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009542 413.0
YYD3_k127_1163490_20 - - - - 0.000007626 57.0
YYD3_k127_1163490_21 - - - - 0.0000123 52.0
YYD3_k127_1163490_22 efflux transmembrane transporter activity - - - 0.0001315 52.0
YYD3_k127_1163490_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 401.0
YYD3_k127_1163490_4 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005956 306.0
YYD3_k127_1163490_5 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 310.0
YYD3_k127_1163490_6 Domain of unknown function (DUF4162) K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 307.0
YYD3_k127_1163490_7 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002152 295.0
YYD3_k127_1163490_8 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002262 289.0
YYD3_k127_1163490_9 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000001819 258.0
YYD3_k127_1173514_0 serine threonine protein kinase K00870,K12132 - 2.7.1.37,2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006999 377.0
YYD3_k127_1173514_1 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000000001141 145.0
YYD3_k127_1191832_0 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006648 504.0
YYD3_k127_1191832_1 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001758 256.0
YYD3_k127_1191832_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000001029 220.0
YYD3_k127_1191832_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000001922 173.0
YYD3_k127_1191832_4 - - - - 0.000000000000000000000000000000005225 147.0
YYD3_k127_1194976_0 Protein tyrosine kinase - - - 7.328e-231 743.0
YYD3_k127_1194976_1 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 523.0
YYD3_k127_1194976_10 dihydrofolate reductase activity - - - 0.0000000000003682 75.0
YYD3_k127_1194976_2 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 517.0
YYD3_k127_1194976_3 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 485.0
YYD3_k127_1194976_4 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 347.0
YYD3_k127_1194976_5 Pfam RibD C-terminal domain K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000003093 250.0
YYD3_k127_1194976_6 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000003069 245.0
YYD3_k127_1194976_7 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003954 222.0
YYD3_k127_1194976_8 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000001078 221.0
YYD3_k127_1194976_9 membrane - - - 0.00000000000000000000000000000000004486 139.0
YYD3_k127_1199225_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 9.79e-269 842.0
YYD3_k127_1199225_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 532.0
YYD3_k127_1199225_10 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007319 340.0
YYD3_k127_1199225_11 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008314 337.0
YYD3_k127_1199225_12 PFAM transferase hexapeptide repeat containing protein K00966 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 306.0
YYD3_k127_1199225_13 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009485 308.0
YYD3_k127_1199225_14 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006466 276.0
YYD3_k127_1199225_15 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003546 285.0
YYD3_k127_1199225_16 extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000818 280.0
YYD3_k127_1199225_17 Copper binding periplasmic protein CusF K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006322 257.0
YYD3_k127_1199225_18 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000005131 244.0
YYD3_k127_1199225_19 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000334 182.0
YYD3_k127_1199225_2 peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 533.0
YYD3_k127_1199225_20 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000003638 177.0
YYD3_k127_1199225_21 acetyltransferase - - - 0.00000000000000000000000000000000000000000001526 169.0
YYD3_k127_1199225_22 Belongs to the SUA5 family K07566 - 2.7.7.87 0.00000000000000000000000000000000000007571 149.0
YYD3_k127_1199225_23 Diacylglycerol kinase - - - 0.00000000000000000000000000000000008682 146.0
YYD3_k127_1199225_24 Lytic transglycosylase catalytic K08309 - - 0.00000000000000000000000000001868 137.0
YYD3_k127_1199225_25 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000001345 110.0
YYD3_k127_1199225_26 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000001451 113.0
YYD3_k127_1199225_27 Ribosomal L32p protein family K02911 - - 0.0000000000000000000007749 97.0
YYD3_k127_1199225_28 peptidyl-tyrosine sulfation - - - 0.0000001202 64.0
YYD3_k127_1199225_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 506.0
YYD3_k127_1199225_4 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 390.0
YYD3_k127_1199225_5 FGGY family of carbohydrate kinases, C-terminal domain K00851 - 2.7.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 390.0
YYD3_k127_1199225_6 phosphoglucomutase phosphomannomutase alpha beta alpha domain II K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 381.0
YYD3_k127_1199225_7 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 371.0
YYD3_k127_1199225_8 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009796 357.0
YYD3_k127_1199225_9 Electron transfer flavoprotein FAD-binding domain K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052 353.0
YYD3_k127_1213127_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 3.771e-285 896.0
YYD3_k127_1213127_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000181 253.0
YYD3_k127_1213127_2 TIGRFAM galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.000000000000002751 75.0
YYD3_k127_1220013_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 3.055e-298 934.0
YYD3_k127_1220013_1 Domain of unknown function (DUF5117) - - - 8.872e-223 706.0
YYD3_k127_1220013_2 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001686 280.0
YYD3_k127_1220013_3 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000003489 275.0
YYD3_k127_1220013_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001072 256.0
YYD3_k127_1220013_5 PFAM Peptidase family M23 K21472 - - 0.0000000000000000000000000000000000000000000004021 175.0
YYD3_k127_1220013_6 GDP-mannose mannosyl hydrolase activity K01858,K03207,K03574 - 3.6.1.55,5.5.1.4 0.0000000000000000000000000000000000000000000197 168.0
YYD3_k127_1220013_7 PFAM carbon monoxide dehydrogenase subunit G K09386 - - 0.00000000000000000000000000000000000001525 151.0
YYD3_k127_1220013_8 - - - - 0.0000000000000000000000006509 108.0
YYD3_k127_1223266_0 Amino acid permease - - - 4.864e-207 664.0
YYD3_k127_1223266_1 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004735 435.0
YYD3_k127_1223266_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 378.0
YYD3_k127_1223266_4 amino acid - - - 0.000000000000678 70.0
YYD3_k127_1223266_5 Phage integrase family K04763 - - 0.0000000005974 62.0
YYD3_k127_1223875_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 516.0
YYD3_k127_1223875_1 PD-(D/E)XK nuclease superfamily - - - 0.00000000002781 64.0
YYD3_k127_1223875_2 abc-type fe3 -hydroxamate transport system, periplasmic component - - - 0.0000000002762 61.0
YYD3_k127_1232708_0 Cys/Met metabolism PLP-dependent enzyme K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 500.0
YYD3_k127_1232708_1 DALR_2 K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 401.0
YYD3_k127_1232708_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946,K07123 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009030,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009229,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0040007,GO:0042357,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000002372 233.0
YYD3_k127_1232708_3 Thioredoxin-like - - - 0.00000000000000000000003829 111.0
YYD3_k127_1232708_4 - - - - 0.0001325 51.0
YYD3_k127_123375_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.071e-284 884.0
YYD3_k127_123375_1 PFAM Pyridoxal-dependent decarboxylase conserved domain K01580,K01593,K13745 - 4.1.1.105,4.1.1.15,4.1.1.28,4.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 581.0
YYD3_k127_123375_10 membrane - - - 0.000000000000000000000000000000001644 132.0
YYD3_k127_123375_11 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000001997 145.0
YYD3_k127_123375_12 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.0000000000000001674 91.0
YYD3_k127_123375_13 PD-(D/E)XK nuclease superfamily - - - 0.00000000009621 74.0
YYD3_k127_123375_15 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.00000001219 66.0
YYD3_k127_123375_2 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 488.0
YYD3_k127_123375_3 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 381.0
YYD3_k127_123375_4 4Fe-4S single cluster domain of Ferredoxin I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 340.0
YYD3_k127_123375_5 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044 336.0
YYD3_k127_123375_6 3'(2'),5'-bisphosphate nucleotidase activity K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000002147 239.0
YYD3_k127_123375_7 Uncharacterised nucleotidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000299 226.0
YYD3_k127_123375_8 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000001934 159.0
YYD3_k127_123375_9 Radical SAM superfamily K22226 - - 0.00000000000000000000000000000000008228 146.0
YYD3_k127_123481_0 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 352.0
YYD3_k127_123481_1 Protein of unknown function (DUF421) - - - 0.00000000000000000000005509 100.0
YYD3_k127_1238511_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1322.0
YYD3_k127_1238511_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 5.12e-281 887.0
YYD3_k127_1238511_10 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K04105,K04110 - 6.2.1.25,6.2.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 387.0
YYD3_k127_1238511_11 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 372.0
YYD3_k127_1238511_12 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 355.0
YYD3_k127_1238511_13 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008052 348.0
YYD3_k127_1238511_14 AcrB/AcrD/AcrF family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 319.0
YYD3_k127_1238511_15 TOBE domain K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006707 306.0
YYD3_k127_1238511_16 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 305.0
YYD3_k127_1238511_17 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005241 274.0
YYD3_k127_1238511_18 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008332 253.0
YYD3_k127_1238511_19 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001551 259.0
YYD3_k127_1238511_2 Enoyl-CoA hydratase/isomerase K15513 - 4.1.2.44 1.13e-215 681.0
YYD3_k127_1238511_20 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000006946 232.0
YYD3_k127_1238511_21 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000003989 228.0
YYD3_k127_1238511_22 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000006119 235.0
YYD3_k127_1238511_23 Binding-protein-dependent transport system inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000007803 228.0
YYD3_k127_1238511_24 Scaffold protein Nfu/NifU N terminal - - - 0.0000000000000000000000000000000000000000000000000000002284 199.0
YYD3_k127_1238511_25 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010412,GO:0015923,GO:0016052,GO:0016787,GO:0016798,GO:0016985,GO:0016998,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046355,GO:0071554,GO:0071704,GO:1901575 3.2.1.78 0.0000000000000000000000000000000000000000000000000000379 209.0
YYD3_k127_1238511_26 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000003518 188.0
YYD3_k127_1238511_27 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000007323 183.0
YYD3_k127_1238511_28 PFAM GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000000000000000000003528 184.0
YYD3_k127_1238511_29 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000002798 175.0
YYD3_k127_1238511_3 Peptidase family M28 - - - 1.723e-211 672.0
YYD3_k127_1238511_30 DinB family - - - 0.0000000000000000000000000000000000000000000003546 171.0
YYD3_k127_1238511_31 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000004609 170.0
YYD3_k127_1238511_32 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000000000000000000000006927 157.0
YYD3_k127_1238511_33 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000005384 124.0
YYD3_k127_1238511_34 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000003385 108.0
YYD3_k127_1238511_35 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000001849 77.0
YYD3_k127_1238511_36 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.00000000000005641 71.0
YYD3_k127_1238511_37 Endonuclease Exonuclease Phosphatase - - - 0.000000000723 69.0
YYD3_k127_1238511_38 Belongs to the UPF0232 family - - - 0.0000006577 57.0
YYD3_k127_1238511_39 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.000002815 55.0
YYD3_k127_1238511_4 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004752 542.0
YYD3_k127_1238511_40 PFAM glycosyl transferase family 39 - - - 0.0008889 52.0
YYD3_k127_1238511_5 Elongation factor SelB, winged helix K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 533.0
YYD3_k127_1238511_6 amino acid transport K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006398 519.0
YYD3_k127_1238511_7 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008728 505.0
YYD3_k127_1238511_8 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005894 425.0
YYD3_k127_1238511_9 Glycosyl transferase 4-like K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 395.0
YYD3_k127_1240249_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 6.768e-257 805.0
YYD3_k127_1240249_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 431.0
YYD3_k127_1267723_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 580.0
YYD3_k127_1267723_1 proline dipeptidase activity K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007016 520.0
YYD3_k127_1267723_2 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000218 257.0
YYD3_k127_1267723_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001728 231.0
YYD3_k127_1267723_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000449 241.0
YYD3_k127_1267723_5 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K02029,K02030 - - 0.000000000000000000000000000000000000000000000000000000000000002323 230.0
YYD3_k127_1267723_6 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000003749 201.0
YYD3_k127_1267723_7 - - - - 0.000000000000000000001022 97.0
YYD3_k127_1290065_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 577.0
YYD3_k127_1290065_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 594.0
YYD3_k127_1290065_10 PAP2 superfamily - - - 0.00001613 51.0
YYD3_k127_1290065_2 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 544.0
YYD3_k127_1290065_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 482.0
YYD3_k127_1290065_4 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 486.0
YYD3_k127_1290065_5 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000006291 251.0
YYD3_k127_1290065_6 DNA-templated transcription, initiation K02405 - - 0.0000000000000000000000000000000000000000000000000000004044 199.0
YYD3_k127_1290065_7 O-linked N-acetylglucosamine transferase - - - 0.00000002216 66.0
YYD3_k127_1290065_8 Diguanylate cyclase - - - 0.00001036 48.0
YYD3_k127_1290065_9 - - - - 0.00001275 47.0
YYD3_k127_1315321_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 296.0
YYD3_k127_1315321_1 Lipocalin-like domain K03098 - - 0.0000000000000000000000000000000000000000000000001731 182.0
YYD3_k127_1315321_2 COG2335 Secreted and surface protein containing fasciclin-like repeats - - - 0.000000000000000000000000000000000000000000000008927 177.0
YYD3_k127_1315321_3 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.000000000000000000000000000000000000000002414 160.0
YYD3_k127_1315321_4 Protein of unknown function (DUF2975) - - - 0.00000000000000000000000000000000001841 141.0
YYD3_k127_1315321_5 - - - - 0.000000000000000000000000000004234 124.0
YYD3_k127_1315321_6 Cro/C1-type HTH DNA-binding domain - - - 0.000000000000000000000000196 110.0
YYD3_k127_1315321_7 MerR family transcriptional regulator K22491 - - 0.000002188 56.0
YYD3_k127_1349578_0 Carboxypeptidase regulatory-like domain - - - 0.0 1188.0
YYD3_k127_1349578_1 TonB-dependent receptor - - - 0.0 1088.0
YYD3_k127_1349578_10 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 336.0
YYD3_k127_1349578_11 Chloramphenicol acetyltransferase K19271 - 2.3.1.28 0.000000000000000000000000000000000000000000000001384 183.0
YYD3_k127_1349578_12 bacterial OsmY and nodulation domain K04065 - - 0.00000000000000000000000000000000000000000000001106 180.0
YYD3_k127_1349578_13 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000000000000000000000000003305 138.0
YYD3_k127_1349578_14 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000166 108.0
YYD3_k127_1349578_15 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000004167 108.0
YYD3_k127_1349578_16 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000002717 66.0
YYD3_k127_1349578_17 Family of unknown function (DUF5335) - - - 0.000001176 56.0
YYD3_k127_1349578_18 Transcriptional regulator K05799,K13637 - - 0.0002458 47.0
YYD3_k127_1349578_2 hydrolase, family 65, central catalytic K15923 - 3.2.1.51 1.246e-259 818.0
YYD3_k127_1349578_3 Glycosyl hydrolases family 31 - - - 2.614e-208 669.0
YYD3_k127_1349578_4 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 619.0
YYD3_k127_1349578_5 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003829 618.0
YYD3_k127_1349578_6 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 549.0
YYD3_k127_1349578_7 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 523.0
YYD3_k127_1349578_8 alpha-L-rhamnosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 386.0
YYD3_k127_1349578_9 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005397 353.0
YYD3_k127_1351008_0 SMART Elongator protein 3 MiaB NifB - - - 1.917e-234 735.0
YYD3_k127_1351008_1 PFAM FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 465.0
YYD3_k127_1351008_2 Arsenical pump-driving ATPase K01551 - 3.6.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 402.0
YYD3_k127_1351008_3 heat shock protein binding K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 326.0
YYD3_k127_1351008_4 Gas vesicle synthesis protein GvpL/GvpF - - - 0.000000000000000000000000000000003302 140.0
YYD3_k127_1351008_6 gas vesicle protein - - - 0.000000000002248 69.0
YYD3_k127_1351008_7 - - - - 0.00000000001892 65.0
YYD3_k127_1351008_8 Gas vesicle synthesis protein GvpL/GvpF - - - 0.0000000001348 68.0
YYD3_k127_1405832_0 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004874 277.0
YYD3_k127_1405832_1 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000001377 219.0
YYD3_k127_1405832_2 protein histidine kinase activity K07675 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000005008 216.0
YYD3_k127_1405832_3 membrane - - - 0.0001516 48.0
YYD3_k127_1406725_0 - K17285 - - 0.0 1262.0
YYD3_k127_1406725_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 5.575e-243 779.0
YYD3_k127_1406725_10 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 362.0
YYD3_k127_1406725_11 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 333.0
YYD3_k127_1406725_12 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 333.0
YYD3_k127_1406725_13 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 312.0
YYD3_k127_1406725_14 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 309.0
YYD3_k127_1406725_15 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008094 286.0
YYD3_k127_1406725_16 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001736 250.0
YYD3_k127_1406725_17 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000003803 199.0
YYD3_k127_1406725_18 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000008241 188.0
YYD3_k127_1406725_19 Methyltransferase FkbM domain - - - 0.000000000000000000000000000000000000008566 156.0
YYD3_k127_1406725_2 ADP-glyceromanno-heptose 6-epimerase activity K01710,K01784,K08678,K08679 - 4.1.1.35,4.2.1.46,5.1.3.2,5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 517.0
YYD3_k127_1406725_20 export protein K01991 - - 0.00000000000000000000001266 112.0
YYD3_k127_1406725_21 lipolytic protein G-D-S-L family K19172 GO:0000271,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016020,GO:0016051,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.00001985 56.0
YYD3_k127_1406725_3 asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 460.0
YYD3_k127_1406725_4 carbamoyl transferase, NodU family K00612 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 427.0
YYD3_k127_1406725_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 415.0
YYD3_k127_1406725_6 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 405.0
YYD3_k127_1406725_7 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 368.0
YYD3_k127_1406725_8 Wzt C-terminal domain K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007342 366.0
YYD3_k127_1406725_9 CobQ CobB MinD ParA nucleotide binding domain K08252,K13661,K16554,K16692 - 2.7.10.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 377.0
YYD3_k127_142821_0 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000001621 207.0
YYD3_k127_142821_1 self proteolysis - - - 0.0000000008194 69.0
YYD3_k127_142821_2 TIGRFAM YD repeat protein - - - 0.000006894 55.0
YYD3_k127_1459142_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 8.299e-214 674.0
YYD3_k127_1459142_1 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 531.0
YYD3_k127_1459142_10 lipopolysaccharide heptosyltransferase K02841,K02843 - - 0.000000000000000000000000000000000000000000000000000000000382 216.0
YYD3_k127_1459142_11 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000000000001358 190.0
YYD3_k127_1459142_12 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000001879 173.0
YYD3_k127_1459142_13 Domain of unknown function (DUF4252) - - - 0.0000000000000000000000000000000000000003232 158.0
YYD3_k127_1459142_14 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000001392 154.0
YYD3_k127_1459142_15 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000003812 147.0
YYD3_k127_1459142_16 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000001062 143.0
YYD3_k127_1459142_17 helix_turn_helix, arabinose operon control protein K07506 - - 0.0000000000000000000000001298 117.0
YYD3_k127_1459142_18 NifU-like N terminal domain K04488 - - 0.00000000000000000000001043 105.0
YYD3_k127_1459142_19 Polysaccharide biosynthesis protein K12454 - 5.1.3.10 0.00000000000000000000009808 108.0
YYD3_k127_1459142_2 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 513.0
YYD3_k127_1459142_20 Protein of unknown function (DUF3108) - - - 0.00000000003083 74.0
YYD3_k127_1459142_21 multi-organism process - - - 0.0000000003437 71.0
YYD3_k127_1459142_22 - - - - 0.00000007819 61.0
YYD3_k127_1459142_24 von Willebrand factor, type A - - - 0.0001729 53.0
YYD3_k127_1459142_3 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 411.0
YYD3_k127_1459142_4 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006141 395.0
YYD3_k127_1459142_5 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002095 266.0
YYD3_k127_1459142_6 Ion channel K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001109 261.0
YYD3_k127_1459142_7 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000006322 246.0
YYD3_k127_1459142_8 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000000000000000000004511 229.0
YYD3_k127_1459142_9 D,d-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000002127 220.0
YYD3_k127_1476917_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001102 288.0
YYD3_k127_1476917_1 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001841 274.0
YYD3_k127_1476917_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000008231 166.0
YYD3_k127_1476917_3 sugar transporter K01991 - - 0.0001778 54.0
YYD3_k127_149785_0 transport - - - 0.0 1167.0
YYD3_k127_149785_1 ROK family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007632 420.0
YYD3_k127_149785_2 purine nucleotide biosynthetic process K02529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004418 255.0
YYD3_k127_149785_3 Branched-chain amino acid transport system / permease component K10440,K10553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005646 245.0
YYD3_k127_149785_4 Protein conserved in bacteria - - - 0.0000002119 64.0
YYD3_k127_1498692_0 family UPF0027 K14415 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 526.0
YYD3_k127_1498692_1 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 541.0
YYD3_k127_1498692_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 361.0
YYD3_k127_1498692_3 PFAM ATPase family associated with various cellular activities (AAA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789 320.0
YYD3_k127_1498692_4 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000000000000000000000000000000001 212.0
YYD3_k127_1498692_5 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000002721 191.0
YYD3_k127_1498692_6 oxidoreductase activity K12511 - - 0.0000000000000000000000000000000000000001197 166.0
YYD3_k127_1498692_7 PFAM ATPase family associated with various cellular activities (AAA) - - - 0.000000000000000000000000000000003179 132.0
YYD3_k127_1498692_8 HNH endonuclease - - - 0.0000001609 59.0
YYD3_k127_1566696_0 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005293 552.0
YYD3_k127_1566696_1 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 460.0
YYD3_k127_1566696_2 - - - - 0.00000000002483 69.0
YYD3_k127_1611379_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233 462.0
YYD3_k127_1611379_1 regulation of DNA-templated transcription, elongation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006786 422.0
YYD3_k127_1611379_2 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 390.0
YYD3_k127_1611379_3 Major intrinsic protein K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 336.0
YYD3_k127_1611379_4 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000001175 236.0
YYD3_k127_1611379_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000005655 229.0
YYD3_k127_1611379_6 Histidine kinase K07683 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000004087 218.0
YYD3_k127_1611379_7 cheY-homologous receiver domain - - - 0.0000000000000000000001454 108.0
YYD3_k127_1611379_8 monooxygenase - GO:0003674,GO:0003824 - 0.0000398 49.0
YYD3_k127_1618785_0 Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system K10562 - 3.6.3.17 7.582e-197 625.0
YYD3_k127_1618785_1 isomerase K01820 - 5.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 578.0
YYD3_k127_1618785_2 xylulokinase activity K00848,K00851,K00854 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0005996,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0008993,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019200,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046365,GO:0046835,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575 2.7.1.12,2.7.1.17,2.7.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005926 376.0
YYD3_k127_1618785_3 Branched-chain amino acid transport system / permease component K10560 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 339.0
YYD3_k127_1618785_4 Belongs to the binding-protein-dependent transport system permease family K10559,K10561 - - 0.00000000000000000000000000000000000000002168 156.0
YYD3_k127_1638296_0 Glycosyl Hydrolase Family 88 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 603.0
YYD3_k127_1638296_1 Oxidoreductase family, C-terminal alpha beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004202 514.0
YYD3_k127_1638296_2 Oligogalacturonate lyase K01730 - 4.2.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 467.0
YYD3_k127_1638296_3 PFAM Glycoside hydrolase, family 2, TIM barrel K01190 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000009698 197.0
YYD3_k127_1638296_4 Putative ATP-dependent DNA helicase recG C-terminal K03655 - 3.6.4.12 0.0000000000001393 74.0
YYD3_k127_1653968_0 eight transmembrane protein EpsH - - - 0.00000000000000000000000000000000000000000000000000000000000000000002695 244.0
YYD3_k127_1653968_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000007962 226.0
YYD3_k127_1653968_2 ATP hydrolysis coupled proton transport K02123 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000001747 146.0
YYD3_k127_1653968_3 efflux transmembrane transporter activity - - - 0.00000000000001345 85.0
YYD3_k127_1653968_4 Tetratricopeptide repeat - - - 0.0000000000003975 76.0
YYD3_k127_1667998_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 3.379e-224 702.0
YYD3_k127_1667998_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 455.0
YYD3_k127_1667998_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 400.0
YYD3_k127_1667998_3 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000598 202.0
YYD3_k127_1679220_0 POT family K03305 - - 9.991e-229 718.0
YYD3_k127_1679220_1 Zinc carboxypeptidase K01278 - 3.4.14.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 587.0
YYD3_k127_1679220_2 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000000000001175 157.0
YYD3_k127_1679220_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000007201 79.0
YYD3_k127_171749_0 PFAM glycosyl transferase family 39 - - - 1.419e-214 686.0
YYD3_k127_171749_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 413.0
YYD3_k127_171749_2 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006714 392.0
YYD3_k127_171749_3 STAS domain K04749 - - 0.000006589 54.0
YYD3_k127_1720398_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007151 621.0
YYD3_k127_1720398_1 UDP binding domain K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 557.0
YYD3_k127_1720398_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 390.0
YYD3_k127_1720398_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 327.0
YYD3_k127_1720398_4 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000121 225.0
YYD3_k127_1720398_5 Enoyl-(Acyl carrier protein) reductase K00034,K03366 - 1.1.1.304,1.1.1.47,1.1.1.76 0.00000000000000000000000000000000000000000000000000000006938 203.0
YYD3_k127_1720398_6 Radical SAM K22227 - - 0.00000000000000000000000000000000000000003852 166.0
YYD3_k127_1720398_7 Monogalactosyldiacylglycerol (MGDG) synthase K03429 - 2.4.1.315 0.000000000000000000000000000000000004801 152.0
YYD3_k127_1720398_8 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000001569 98.0
YYD3_k127_1720398_9 Transposase IS200 like - - - 0.000007945 55.0
YYD3_k127_1728613_0 Transport of potassium into the cell K03549 - - 2.437e-255 802.0
YYD3_k127_1728613_1 Histidine kinase K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 325.0
YYD3_k127_1728613_2 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 310.0
YYD3_k127_1728613_3 response regulator, receiver K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007148 302.0
YYD3_k127_1728613_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000004876 261.0
YYD3_k127_1728613_5 helix_turn_helix, Lux Regulon K02282,K07689 - - 0.00000000000000000000000000000000000000000000000000000000000000008785 228.0
YYD3_k127_1728613_6 - - - - 0.000000000000000000000000000001686 140.0
YYD3_k127_1728613_7 - - - - 0.000000000000000000000000000003988 121.0
YYD3_k127_1728613_8 Uncharacterized ACR, COG1993 K09137 - - 0.000000000000000000000009307 102.0
YYD3_k127_1728726_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 594.0
YYD3_k127_1728726_1 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 452.0
YYD3_k127_1728726_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 372.0
YYD3_k127_1728726_3 Oxidoreductase, molybdopterin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002027 280.0
YYD3_k127_1728726_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000245 283.0
YYD3_k127_1730981_0 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005978 394.0
YYD3_k127_1730981_1 Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 323.0
YYD3_k127_1730981_2 Protein kinase domain K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000001366 215.0
YYD3_k127_1730981_3 peptidase M15B and M15C DD-carboxypeptidase VanY - - - 0.0000000000000001511 83.0
YYD3_k127_1730988_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 1.116e-202 648.0
YYD3_k127_1730988_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007388 556.0
YYD3_k127_1730988_2 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 452.0
YYD3_k127_1730988_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000005812 235.0
YYD3_k127_1730988_4 pfkB family carbohydrate kinase K18478 - 2.7.1.184 0.0000000000000000000000000000000000000000000000000000000000000002443 231.0
YYD3_k127_1730988_5 Trypsin K04771 - 3.4.21.107 0.00000000001602 76.0
YYD3_k127_1730988_6 peptidase M15B and M15C DD-carboxypeptidase VanY - - - 0.0000000006189 69.0
YYD3_k127_1738953_0 Carboxypeptidase regulatory-like domain - - - 5.086e-305 958.0
YYD3_k127_1738953_1 sh3 domain protein - - - 6.735e-223 705.0
YYD3_k127_1738953_10 PFAM TonB-dependent Receptor Plug - - - 0.0000000009241 72.0
YYD3_k127_1738953_11 Mo-molybdopterin cofactor metabolic process - - - 0.00000006349 57.0
YYD3_k127_1738953_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005918 337.0
YYD3_k127_1738953_3 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003229 284.0
YYD3_k127_1738953_4 Haemolysin-III related K11068 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000633 249.0
YYD3_k127_1738953_5 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009237 262.0
YYD3_k127_1738953_6 membrane - - - 0.0000000000000000000000000000000000000000000000000000000004229 220.0
YYD3_k127_1738953_7 Putative lumazine-binding - - - 0.0000000000000000000000000000000000000000004066 162.0
YYD3_k127_1738953_8 - - - - 0.00000000000000000000000000000000000004781 163.0
YYD3_k127_1738953_9 - - - - 0.0000000003053 74.0
YYD3_k127_1741003_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 4.329e-232 726.0
YYD3_k127_1741003_1 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 489.0
YYD3_k127_1741003_10 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000008401 198.0
YYD3_k127_1741003_11 RNA recognition motif - - - 0.000000000000000000000000000000000001257 141.0
YYD3_k127_1741003_12 Tyrosine phosphatase family - - - 0.00000000000000000000000000004403 125.0
YYD3_k127_1741003_13 von Willebrand factor, type A - - - 0.0000000000000000000421 105.0
YYD3_k127_1741003_14 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000166 76.0
YYD3_k127_1741003_2 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 479.0
YYD3_k127_1741003_3 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009443 421.0
YYD3_k127_1741003_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601,K03797 - 3.1.11.6,3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 358.0
YYD3_k127_1741003_5 SMART ATPase, AAA type, core K05847 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 329.0
YYD3_k127_1741003_6 Histidine-specific methyltransferase, SAM-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 291.0
YYD3_k127_1741003_7 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000003276 267.0
YYD3_k127_1741003_8 Protein tyrosine kinase K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001199 252.0
YYD3_k127_1741003_9 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000003897 210.0
YYD3_k127_1743500_0 Belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 1.808e-217 685.0
YYD3_k127_1743500_1 Dehydrogenase K02030,K03810 - - 5.237e-217 696.0
YYD3_k127_1743500_2 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009762 496.0
YYD3_k127_1743500_3 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003603 435.0
YYD3_k127_1743500_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001836 291.0
YYD3_k127_1743500_5 Glycosyl transferases group 1 - - - 0.00000000000000000002448 96.0
YYD3_k127_1743500_6 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000001132 90.0
YYD3_k127_1743500_7 PFAM Alcohol dehydrogenase GroES-like domain K00008 - 1.1.1.14 0.00005736 46.0
YYD3_k127_1746527_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008976,GO:0009267,GO:0009405,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0015968,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0036293,GO:0040007,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0044464,GO:0046777,GO:0046872,GO:0050896,GO:0051704,GO:0051716,GO:0070482,GO:0071496,GO:0071704,GO:0071944,GO:1901564 2.7.4.1 6.091e-203 654.0
YYD3_k127_1746527_1 Belongs to the glycosyl hydrolase 31 family K01187 - 3.2.1.20 5.576e-202 658.0
YYD3_k127_1746527_10 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000000000001914 232.0
YYD3_k127_1746527_11 hydrolase activity, acting on ester bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000224 227.0
YYD3_k127_1746527_12 Glucokinase K00845 GO:0003674,GO:0003824,GO:0004340,GO:0004396,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019637,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044464,GO:0046835,GO:0051156,GO:0071704,GO:1901135 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000005442 216.0
YYD3_k127_1746527_13 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000001666 203.0
YYD3_k127_1746527_14 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.0000000000000000000000000000000000006592 147.0
YYD3_k127_1746527_15 Tyrosine phosphatase family - - - 0.0000000000000000001041 96.0
YYD3_k127_1746527_16 catechol 1,2-dioxygenase - - - 0.00000000000000001386 91.0
YYD3_k127_1746527_18 Domain of unknown function (DUF4956) - - - 0.0000000003832 70.0
YYD3_k127_1746527_19 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000005468 67.0
YYD3_k127_1746527_2 serine threonine protein kinase K12132 - 2.7.11.1 4.426e-194 636.0
YYD3_k127_1746527_3 Glucodextranase, domain N K01178 - 3.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 610.0
YYD3_k127_1746527_4 MFS/sugar transport protein K16211 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 542.0
YYD3_k127_1746527_5 Peptidase family S58 K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005305 479.0
YYD3_k127_1746527_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 391.0
YYD3_k127_1746527_7 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 332.0
YYD3_k127_1746527_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002245 284.0
YYD3_k127_1748373_0 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 357.0
YYD3_k127_1748373_1 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676 305.0
YYD3_k127_1748373_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000003865 153.0
YYD3_k127_1748373_3 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000005638 151.0
YYD3_k127_1748373_4 methyltransferase - - - 0.0000000000000000000000000002931 122.0
YYD3_k127_1748373_5 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA - - - 0.0000000000000000000005144 106.0
YYD3_k127_1748373_6 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis - - - 0.0004857 43.0
YYD3_k127_1749929_0 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 282.0
YYD3_k127_1749929_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000002388 202.0
YYD3_k127_1749929_2 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000003244 174.0
YYD3_k127_1749929_3 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000003403 188.0
YYD3_k127_1749929_4 Domain of unknown function (DUF4112) - - - 0.000000000000000000000000004303 117.0
YYD3_k127_1749929_5 Belongs to the Fur family K09825 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000127 102.0
YYD3_k127_1791529_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 2.707e-305 952.0
YYD3_k127_1791529_1 Glycosyl hydrolase family 47 K01230 - 3.2.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 550.0
YYD3_k127_1791529_2 Aminotransferase class-III K00823 - 2.6.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 509.0
YYD3_k127_1791529_3 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 338.0
YYD3_k127_1791529_4 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000885 229.0
YYD3_k127_1791529_5 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K02029,K02030 - - 0.000000000000000000000000000000000000000000000000000009223 195.0
YYD3_k127_1791529_6 Transglycosylase SLT domain K08309 - - 0.00000000000000000000000007794 115.0
YYD3_k127_1791529_7 PIN domain - - - 0.0000000000000000000000003329 111.0
YYD3_k127_1791529_9 gag-polyprotein putative aspartyl protease - - - 0.0000002176 59.0
YYD3_k127_1804760_0 Belongs to the ClpA ClpB family K03696 - - 0.0 1084.0
YYD3_k127_1804760_1 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 7.546e-216 673.0
YYD3_k127_1804760_10 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 299.0
YYD3_k127_1804760_11 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000001898 269.0
YYD3_k127_1804760_12 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000001092 222.0
YYD3_k127_1804760_13 Part of the ABC transporter complex LolCDE involved in the translocation of K02003,K09810 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006807,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0015031,GO:0015399,GO:0015405,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0022804,GO:0022857,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0042157,GO:0042160,GO:0042623,GO:0042626,GO:0042886,GO:0042953,GO:0043167,GO:0043168,GO:0043170,GO:0043190,GO:0043492,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0045184,GO:0051179,GO:0051234,GO:0051641,GO:0055085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072657,GO:0089705,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351,GO:1990778 - 0.0000000000000000000000000000000000000000000000000002365 192.0
YYD3_k127_1804760_14 FabA-like domain K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000001857 175.0
YYD3_k127_1804760_15 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000001148 157.0
YYD3_k127_1804760_16 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.0000000000000000000000000000000004425 134.0
YYD3_k127_1804760_17 Tetratricopeptide repeat - - - 0.0000000001781 75.0
YYD3_k127_1804760_18 Outer membrane protein (OmpH-like) K06142 - - 0.00000004613 63.0
YYD3_k127_1804760_19 guanyl-nucleotide exchange factor activity K01179,K03929,K09612,K12287,K19701,K19702 GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005623,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.2.1.4,3.4.11.10,3.4.11.24,3.4.11.6 0.000000125 64.0
YYD3_k127_1804760_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 524.0
YYD3_k127_1804760_20 PLD-like domain - - - 0.0000002877 63.0
YYD3_k127_1804760_21 Outer membrane protein (OmpH-like) K06142 - - 0.000004013 57.0
YYD3_k127_1804760_22 TPM domain K06872 - - 0.00001882 59.0
YYD3_k127_1804760_23 peptidase C11 clostripain - - - 0.0001134 55.0
YYD3_k127_1804760_24 Phospholipase D. Active site motifs. - - - 0.0001973 54.0
YYD3_k127_1804760_3 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 477.0
YYD3_k127_1804760_4 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004006 438.0
YYD3_k127_1804760_5 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 373.0
YYD3_k127_1804760_6 Peptidase M1, membrane alanine aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 355.0
YYD3_k127_1804760_7 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007992 301.0
YYD3_k127_1804760_8 Protein of unknown function (DUF1009) K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005826 301.0
YYD3_k127_1804760_9 Peptidase, M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 299.0
YYD3_k127_1812050_0 Heat shock 70 kDa protein K04043 - - 5.223e-292 907.0
YYD3_k127_1812050_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 2.814e-199 649.0
YYD3_k127_1812050_10 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000006154 229.0
YYD3_k127_1812050_11 Metallophosphoesterase K07098 - - 0.0000000000000000000000000000000000000000000000000001412 196.0
YYD3_k127_1812050_12 PQQ enzyme repeat - - - 0.000000000000000000000000000000000000000000000000006204 197.0
YYD3_k127_1812050_13 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000113 154.0
YYD3_k127_1812050_14 MerR HTH family regulatory protein K13640 - - 0.0000000000000000000000000000000000004194 144.0
YYD3_k127_1812050_15 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000004645 148.0
YYD3_k127_1812050_16 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.0000000000000000000000000002428 121.0
YYD3_k127_1812050_17 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000005064 118.0
YYD3_k127_1812050_18 tetraacyldisaccharide 4'-kinase activity K00912,K09791 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.1.130 0.0000000000000000000004442 96.0
YYD3_k127_1812050_19 3D domain - - - 0.000000000000000001705 93.0
YYD3_k127_1812050_2 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 411.0
YYD3_k127_1812050_20 DinB family - - - 0.000000000008074 72.0
YYD3_k127_1812050_21 Bacterial PH domain K08981 - - 0.00000005752 61.0
YYD3_k127_1812050_22 Putative peptidoglycan binding domain - - - 0.0000002538 57.0
YYD3_k127_1812050_23 Domain of unknown function (DUF4388) - - - 0.000001035 59.0
YYD3_k127_1812050_3 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 422.0
YYD3_k127_1812050_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004957 389.0
YYD3_k127_1812050_5 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 310.0
YYD3_k127_1812050_6 D-alanyl-d-alanine carboxypeptidase K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 313.0
YYD3_k127_1812050_7 Phosphomethylpyrimidine kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000002321 274.0
YYD3_k127_1812050_8 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000234 275.0
YYD3_k127_1812050_9 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005608 279.0
YYD3_k127_1827483_0 protease with the C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 318.0
YYD3_k127_1827483_1 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001991 282.0
YYD3_k127_1829206_0 MacB-like periplasmic core domain - - - 4.003e-203 662.0
YYD3_k127_1829206_1 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 5.865e-197 641.0
YYD3_k127_1829206_2 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008693 334.0
YYD3_k127_1829206_3 Hydrolase Family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 323.0
YYD3_k127_1829206_4 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000002954 128.0
YYD3_k127_1829206_5 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000001307 106.0
YYD3_k127_1829206_6 Protein of unknown function (DUF1059) - - - 0.0000000000000000008374 91.0
YYD3_k127_1845592_0 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 495.0
YYD3_k127_1845592_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 295.0
YYD3_k127_1845592_2 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.0000000000000000000000000000000000000000000000000000000002495 210.0
YYD3_k127_1845592_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000218 194.0
YYD3_k127_1845592_4 tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000846 162.0
YYD3_k127_1845592_5 PFAM Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000018 129.0
YYD3_k127_1845592_6 PFAM Archaeal ATPase - - - 0.00000000000000000000000000000002731 146.0
YYD3_k127_1845592_7 Hemerythrin HHE cation binding domain - - - 0.000000000000000000001366 104.0
YYD3_k127_1845592_8 YwiC-like protein - - - 0.000000000000000000005627 96.0
YYD3_k127_1853893_0 Pfam:UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007077 412.0
YYD3_k127_1853893_1 response regulator K07713 - - 0.0000000000000000000000000000000000000000000002035 174.0
YYD3_k127_1853893_2 His Kinase A (phosphoacceptor) domain K02668,K07709 - 2.7.13.3 0.00000000000000000000000000000002022 142.0
YYD3_k127_1853893_3 PEP-CTERM motif - - - 0.0000000000000001566 88.0
YYD3_k127_1853893_4 Di-haem cytochrome c peroxidase - - - 0.00000000003291 63.0
YYD3_k127_1877159_0 Sodium:dicarboxylate symporter family K03309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000662 377.0
YYD3_k127_1877159_1 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008245 305.0
YYD3_k127_1877159_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003862 282.0
YYD3_k127_1877159_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000007062 235.0
YYD3_k127_1877159_4 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000003878 130.0
YYD3_k127_1904850_0 Tricorn protease C1 domain K08676 - - 0.0 1357.0
YYD3_k127_1904850_1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006067 250.0
YYD3_k127_1904850_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000004369 203.0
YYD3_k127_1904850_3 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000005562 72.0
YYD3_k127_1912952_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 471.0
YYD3_k127_1912952_1 Trypsin-like serine protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001512 278.0
YYD3_k127_1912952_2 histone H2A K63-linked ubiquitination K08884,K11894 - 2.7.11.1 0.00000000000000536 89.0
YYD3_k127_1915414_0 His Kinase A (phosphoacceptor) domain K02484 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007646 631.0
YYD3_k127_1915414_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 559.0
YYD3_k127_1915414_2 PFAM Type II secretion system protein E K02454,K02504,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 471.0
YYD3_k127_1915414_3 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 404.0
YYD3_k127_1915414_4 guanyl-nucleotide exchange factor activity K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 426.0
YYD3_k127_1915414_5 amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000006389 226.0
YYD3_k127_1915414_6 Pyridoxamine 5'-phosphate oxidase like - - - 0.000000000000000000000000000000000000000000000000000000002484 204.0
YYD3_k127_1935385_0 Tricorn protease C1 domain K08676 - - 0.0 1272.0
YYD3_k127_1935385_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 566.0
YYD3_k127_1935385_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005992 533.0
YYD3_k127_1935385_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 483.0
YYD3_k127_1935385_4 Redoxin - - - 0.0000000000000000000000000000000009349 136.0
YYD3_k127_1935385_5 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000008164 131.0
YYD3_k127_1935385_6 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000005076 109.0
YYD3_k127_1935385_7 von Willebrand factor, type A - - - 0.0000000000000000000008286 107.0
YYD3_k127_1935385_8 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000002168 81.0
YYD3_k127_1935385_9 SMART Transport-associated and nodulation region K04065 - - 0.000001771 59.0
YYD3_k127_1946303_0 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 580.0
YYD3_k127_1946303_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009379 577.0
YYD3_k127_1946303_10 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000004748 238.0
YYD3_k127_1946303_11 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000009873 216.0
YYD3_k127_1946303_12 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000133 219.0
YYD3_k127_1946303_13 chaperone-mediated protein folding - - - 0.00000000000000000000000000000000000000000000000000004872 210.0
YYD3_k127_1946303_14 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000007716 189.0
YYD3_k127_1946303_15 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000004171 181.0
YYD3_k127_1946303_16 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000518 180.0
YYD3_k127_1946303_17 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000002403 173.0
YYD3_k127_1946303_18 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000001446 163.0
YYD3_k127_1946303_19 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000002478 154.0
YYD3_k127_1946303_2 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000804 519.0
YYD3_k127_1946303_20 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000006027 149.0
YYD3_k127_1946303_21 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000002474 147.0
YYD3_k127_1946303_22 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000001314 134.0
YYD3_k127_1946303_23 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000006251 130.0
YYD3_k127_1946303_24 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000008635 126.0
YYD3_k127_1946303_25 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000005002 122.0
YYD3_k127_1946303_26 PFAM Phosphoribosyltransferase K02242 - - 0.000000000000000000000000001891 122.0
YYD3_k127_1946303_27 Ribosomal protein L17 K02879 - - 0.00000000000000000000000008402 114.0
YYD3_k127_1946303_28 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000005109 105.0
YYD3_k127_1946303_29 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000005449 105.0
YYD3_k127_1946303_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004595 474.0
YYD3_k127_1946303_30 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000007063 100.0
YYD3_k127_1946303_31 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000003476 94.0
YYD3_k127_1946303_32 Ribosomal protein L30 K02907 - - 0.000000000000005759 76.0
YYD3_k127_1946303_33 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000001457 74.0
YYD3_k127_1946303_34 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000007071 57.0
YYD3_k127_1946303_35 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000006247 53.0
YYD3_k127_1946303_36 Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family K05928 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0016740,GO:0016741,GO:0018130,GO:0032259,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050342,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617 2.1.1.95 0.000005709 57.0
YYD3_k127_1946303_4 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 449.0
YYD3_k127_1946303_5 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009697 416.0
YYD3_k127_1946303_6 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 320.0
YYD3_k127_1946303_7 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001806 280.0
YYD3_k127_1946303_8 PFAM Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002453 287.0
YYD3_k127_1946303_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004948 252.0
YYD3_k127_1957813_0 transferase activity, transferring glycosyl groups K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005991 331.0
YYD3_k127_1957813_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000422 267.0
YYD3_k127_1957813_2 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004097 260.0
YYD3_k127_1957813_3 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000003748 190.0
YYD3_k127_1957813_4 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000005259 138.0
YYD3_k127_1957813_5 O-antigen ligase like membrane protein - - - 0.0000000000000000001103 103.0
YYD3_k127_1957813_6 metallopeptidase activity K01179,K20276 - 3.2.1.4 0.00000000001798 78.0
YYD3_k127_1957813_7 Endonuclease/Exonuclease/phosphatase family - - - 0.00000001954 66.0
YYD3_k127_1957813_8 Parallel beta-helix repeats - - - 0.0001698 55.0
YYD3_k127_1959979_0 Catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate K00294 - 1.2.1.88 4.669e-212 670.0
YYD3_k127_1959979_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 443.0
YYD3_k127_1959979_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 296.0
YYD3_k127_1959979_3 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000236 280.0
YYD3_k127_1959979_4 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001887 255.0
YYD3_k127_1959979_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000009997 199.0
YYD3_k127_1959979_6 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.0006739 50.0
YYD3_k127_1988083_0 Pilus assembly protein PilX K02673 - - 0.00000000000000004156 94.0
YYD3_k127_1988083_1 glutathione transferase activity K00799 - 2.5.1.18 0.00000000000003236 77.0
YYD3_k127_2019473_0 Molydopterin dinucleotide binding domain K00123,K05299 - 1.17.1.10,1.17.1.9 0.0 1181.0
YYD3_k127_2019473_1 ABC1 family K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 592.0
YYD3_k127_2019473_10 - - - - 0.000000001866 63.0
YYD3_k127_2019473_11 Universal stress protein family - - - 0.0000004143 61.0
YYD3_k127_2019473_2 DNA-directed DNA polymerase activity K02347,K03581,K04477 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000009264 202.0
YYD3_k127_2019473_3 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000008861 203.0
YYD3_k127_2019473_4 bacterial OsmY and nodulation domain - - - 0.00000000000000000000000000000000000000000000002231 179.0
YYD3_k127_2019473_5 Universal stress protein family - - - 0.00000000000000000000000000000004571 139.0
YYD3_k127_2019473_6 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000001253 131.0
YYD3_k127_2019473_7 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000001043 113.0
YYD3_k127_2019473_8 iron dependent repressor K03709 - - 0.0000000000000000000005008 95.0
YYD3_k127_2019473_9 AMP binding - - - 0.0000000000000008625 89.0
YYD3_k127_2022799_0 Tetratricopeptide repeat - - - 1.77e-235 766.0
YYD3_k127_2022799_1 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006358 605.0
YYD3_k127_2022799_2 Amidinotransferase K01482 - 3.5.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 293.0
YYD3_k127_2022799_3 amino acid peptide transporter K03305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006174 263.0
YYD3_k127_2022799_4 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000002536 272.0
YYD3_k127_2022799_5 RNA polymerase, sigma-24 subunit, ECF subfamily K02405 - - 0.000000000000000000000000000000000000000000000000000000001805 206.0
YYD3_k127_2022799_6 Ferritin-like domain K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000002269 201.0
YYD3_k127_2022799_7 Glutamine synthetase type III K01915 - 6.3.1.2 0.000000000000000000000000000006721 123.0
YYD3_k127_2022799_8 TIR domain - - - 0.00000000000000000000009427 110.0
YYD3_k127_2027966_0 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 562.0
YYD3_k127_2027966_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 350.0
YYD3_k127_2027966_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 310.0
YYD3_k127_2027966_4 Carboxypeptidase regulatory-like domain - - - 0.0000001076 66.0
YYD3_k127_2037984_0 PFAM Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 433.0
YYD3_k127_2037984_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002092 243.0
YYD3_k127_2037984_2 U mismatch-specific DNA glycosylase K03649 - 3.2.2.28 0.00000000000000000000000000000000000000000000000000000000000000003636 230.0
YYD3_k127_2037984_3 oxidoreductase activity - - - 0.0000000000000000000000000006763 128.0
YYD3_k127_2042602_0 L-seryl-tRNA selenium transferase K01042 - 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003188 372.0
YYD3_k127_2042602_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 298.0
YYD3_k127_2042602_10 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000000004184 106.0
YYD3_k127_2042602_2 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000137 265.0
YYD3_k127_2042602_3 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000007729 239.0
YYD3_k127_2042602_4 metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000587 224.0
YYD3_k127_2042602_5 CHASE2 - - - 0.000000000000000000000000000000000000000000000000001151 206.0
YYD3_k127_2042602_6 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000002265 169.0
YYD3_k127_2042602_7 Peptidase, M23 family - - - 0.0000000000000000000000000000000000000001861 162.0
YYD3_k127_2042602_8 SET domain K07117 - - 0.0000000000000000000000000000000002467 136.0
YYD3_k127_2042602_9 - - - - 0.00000000000000000000000000006744 124.0
YYD3_k127_2047495_0 FtsX-like permease family - - - 0.000000000000000000000000000000000000000003076 159.0
YYD3_k127_2047495_1 response to oxidative stress - - - 0.0000000000000000000000000000000000000001718 154.0
YYD3_k127_2047495_2 DNA-binding transcription factor activity K03892 - - 0.00000000000000000000000000001359 121.0
YYD3_k127_2047495_3 Protein of unknown function (DUF2892) - - - 0.0000000000000000006558 88.0
YYD3_k127_2047495_4 PFAM Helix-turn-helix K07729 - - 0.000000000000000001995 86.0
YYD3_k127_2049193_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000006989 225.0
YYD3_k127_2049193_1 PFAM Histidine triad (HIT) protein K02503 - - 0.000000000000000000000000000000000000000000000000000007798 195.0
YYD3_k127_2049193_2 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000002959 138.0
YYD3_k127_2049193_3 lactoylglutathione lyase activity - - - 0.0000000003441 64.0
YYD3_k127_2049193_4 - - - - 0.000000002116 66.0
YYD3_k127_205438_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1046.0
YYD3_k127_205438_1 Zn-dependent peptidases K07263 - - 0.0003341 44.0
YYD3_k127_2067814_0 Flavin-binding monooxygenase-like - - - 1.136e-229 719.0
YYD3_k127_2067814_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 426.0
YYD3_k127_2067814_2 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 426.0
YYD3_k127_2067814_4 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 362.0
YYD3_k127_2067814_5 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000116 269.0
YYD3_k127_2067814_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000002179 207.0
YYD3_k127_2067814_7 Acyltransferase family - - - 0.00000000000000000000002562 113.0
YYD3_k127_2067814_8 COG0457 FOG TPR repeat - - - 0.000000000000003392 87.0
YYD3_k127_2071334_0 PFAM carbohydrate kinase K00854 - 2.7.1.17 3.035e-217 684.0
YYD3_k127_2071334_1 TIGRFAM galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 465.0
YYD3_k127_2071334_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007338 437.0
YYD3_k127_2071334_3 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 362.0
YYD3_k127_2071334_4 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007448 248.0
YYD3_k127_2071334_5 Ankyrin repeat K06867 - - 0.00000000000000000000000000000000008601 150.0
YYD3_k127_2071334_6 Tetratricopeptide repeats - - - 0.000000000000001453 83.0
YYD3_k127_2071334_7 cAMP biosynthetic process - - - 0.0000002778 52.0
YYD3_k127_2094827_0 Belongs to the glycosyl hydrolase 28 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 596.0
YYD3_k127_2094827_1 Glycosyl Hydrolase Family 88 K15532 - 3.2.1.172 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 542.0
YYD3_k127_2094827_2 Pectic acid lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 403.0
YYD3_k127_2094827_3 Pectinesterase K01051 - 3.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 304.0
YYD3_k127_2094827_4 FCD K05799 - - 0.000000000000000000000000000000000000000000000000000000000000000005606 233.0
YYD3_k127_2094827_5 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000002123 91.0
YYD3_k127_2098086_0 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 388.0
YYD3_k127_2098086_1 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 329.0
YYD3_k127_2098086_2 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 297.0
YYD3_k127_2098086_3 succinate dehydrogenase K00241 - - 0.000000000000000000000000000000000000000000000001922 181.0
YYD3_k127_2098086_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000001057 134.0
YYD3_k127_2098086_5 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 0.00000000000000000000008889 100.0
YYD3_k127_2110366_0 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 456.0
YYD3_k127_2110366_1 COGs COG4299 conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 405.0
YYD3_k127_2141127_0 transport - - - 6.166e-309 987.0
YYD3_k127_2141127_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 589.0
YYD3_k127_2141127_2 PFAM D-aminoacylase, C-terminal region K06015 - 3.5.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 544.0
YYD3_k127_2141127_3 COG0147 Anthranilate para-aminobenzoate synthases component I K01665,K03342,K13950 - 2.6.1.85,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004277 524.0
YYD3_k127_2141127_4 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008559 458.0
YYD3_k127_2141127_5 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000005944 265.0
YYD3_k127_2141127_6 4Fe-4S binding domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002364 248.0
YYD3_k127_2141127_7 TPR repeat - - - 0.0000000000000000000000000000000000000000000000007993 190.0
YYD3_k127_2158267_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 516.0
YYD3_k127_2158267_1 TonB-dependent Receptor Plug K16090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 374.0
YYD3_k127_2158267_2 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 325.0
YYD3_k127_2169856_0 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 389.0
YYD3_k127_2169856_1 Transport and Golgi organisation 2 - - - 0.00000000000000000000000000000000000009346 151.0
YYD3_k127_2169856_2 - - - - 0.0000000000000000000000000000001841 127.0
YYD3_k127_2169856_3 DinB family - - - 0.00000000000000000000000000004621 122.0
YYD3_k127_2169856_4 Acyl-transferase K00655 - 2.3.1.51 0.00006612 46.0
YYD3_k127_2173202_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 4.466e-301 943.0
YYD3_k127_2173202_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 304.0
YYD3_k127_2173202_10 Domain of unknown function (DUF4956) - - - 0.0000000001392 72.0
YYD3_k127_2173202_11 Putative zinc-finger - - - 0.0001782 52.0
YYD3_k127_2173202_2 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000001303 221.0
YYD3_k127_2173202_3 - - - - 0.0000000000000000000000000000000000000000000000000001181 199.0
YYD3_k127_2173202_4 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000000000001554 175.0
YYD3_k127_2173202_5 Dehydrogenase K00114 - 1.1.2.8 0.0000000000000000000000000006039 117.0
YYD3_k127_2173202_6 Tyrosine phosphatase family - - - 0.00000000000000000000000004986 115.0
YYD3_k127_2173202_7 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000006923 92.0
YYD3_k127_2173202_8 - - - - 0.000000000002778 76.0
YYD3_k127_2173202_9 Hsp20/alpha crystallin family K13993 - - 0.00000000002817 70.0
YYD3_k127_2215993_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008295 480.0
YYD3_k127_2215993_1 Phytanoyl-CoA dioxygenase (PhyH) K00477 - 1.14.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 359.0
YYD3_k127_2215993_10 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000005399 82.0
YYD3_k127_2215993_11 Peptidase, M16 - - - 0.0000000000001258 84.0
YYD3_k127_2215993_12 PFAM helix-turn-helix- domain containing protein AraC type - - - 0.0000000000002 76.0
YYD3_k127_2215993_13 Bilirubin oxidase - - - 0.00000000000349 71.0
YYD3_k127_2215993_14 Belongs to the 'phage' integrase family K04763 - - 0.00000001601 61.0
YYD3_k127_2215993_2 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 308.0
YYD3_k127_2215993_3 PepSY-associated TM region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001325 273.0
YYD3_k127_2215993_4 copper resistance - - - 0.000000000000000000000000000000000000000000000000001786 190.0
YYD3_k127_2215993_5 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000001196 190.0
YYD3_k127_2215993_6 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000001706 167.0
YYD3_k127_2215993_7 PFAM von Willebrand factor type A - - - 0.000000000000000000000000000000001407 143.0
YYD3_k127_2215993_8 - - - - 0.0000000000000000000000000006282 130.0
YYD3_k127_2215993_9 Protein of unknown function with PCYCGC motif - - - 0.000000000000000004715 90.0
YYD3_k127_2261503_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008587 312.0
YYD3_k127_2261503_1 Domain of unknown function (DUF4861) K01051 - 3.1.1.11 0.000000000000000000000000000000000000000000000000000000000000001155 233.0
YYD3_k127_2261503_2 Response regulator receiver K02477 - - 0.000000000000000000000000000000000000000000000000000000213 205.0
YYD3_k127_2261503_3 Subtilase family - - - 0.000000000000000000000000000000000000000000004623 175.0
YYD3_k127_2261503_4 Tfp pilus assembly protein FimV - - - 0.00000004156 64.0
YYD3_k127_2261503_5 Protein of unknown function (DUF3298) - - - 0.00005348 53.0
YYD3_k127_2280114_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 4.687e-210 662.0
YYD3_k127_2280114_1 BMC K04027 - - 0.000000000000000000000000000000000001052 145.0
YYD3_k127_2280114_2 Helix-turn-helix domain K15539 - - 0.000000000001207 75.0
YYD3_k127_2303569_0 Ribosomal protein S1 K02945 - - 2.618e-206 659.0
YYD3_k127_2303569_1 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 610.0
YYD3_k127_2303569_10 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008267 272.0
YYD3_k127_2303569_11 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000001251 246.0
YYD3_k127_2303569_12 Protein of unknown function (DUF1003) - - - 0.0000000000000000000000000000000000000000000000000000000000000003737 231.0
YYD3_k127_2303569_13 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000358 217.0
YYD3_k127_2303569_14 PFAM histidine triad (HIT) protein K19710 - 2.7.7.53 0.000000000000000000000000000000000000000000000000000001036 196.0
YYD3_k127_2303569_15 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000001361 179.0
YYD3_k127_2303569_16 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000001294 166.0
YYD3_k127_2303569_17 Peptidase family M50 K06402 - - 0.000000000000000000000000000000000000000002811 163.0
YYD3_k127_2303569_18 Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000000000000000000000000000000001564 151.0
YYD3_k127_2303569_19 HAD-superfamily hydrolase subfamily IA, variant 3 K01091,K01838 - 3.1.3.18,5.4.2.6 0.000000000000000000000000000000001118 139.0
YYD3_k127_2303569_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004334 575.0
YYD3_k127_2303569_20 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.0000000000000000000000000000000698 127.0
YYD3_k127_2303569_21 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.000000000000000000005986 93.0
YYD3_k127_2303569_22 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000002383 84.0
YYD3_k127_2303569_23 cellulose binding - - - 0.0000000000003445 83.0
YYD3_k127_2303569_24 histone H2A K63-linked ubiquitination - - - 0.000000000001892 74.0
YYD3_k127_2303569_25 Putative peptidoglycan binding domain - - - 0.000005519 60.0
YYD3_k127_2303569_26 peptidyl-tyrosine sulfation - - - 0.00001057 58.0
YYD3_k127_2303569_3 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 511.0
YYD3_k127_2303569_4 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 484.0
YYD3_k127_2303569_5 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008708 384.0
YYD3_k127_2303569_6 Metal-dependent phosphohydrolase K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 346.0
YYD3_k127_2303569_7 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000824 343.0
YYD3_k127_2303569_8 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 313.0
YYD3_k127_2303569_9 tRNA processing K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 299.0
YYD3_k127_2306087_0 cellulose binding - - - 0.0 1347.0
YYD3_k127_2306087_1 Domain of unknown function (DUF5117) - - - 3.064e-296 932.0
YYD3_k127_2306087_10 CHASE3 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 350.0
YYD3_k127_2306087_11 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 334.0
YYD3_k127_2306087_12 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001831 271.0
YYD3_k127_2306087_13 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000003586 260.0
YYD3_k127_2306087_14 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004301 268.0
YYD3_k127_2306087_15 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.000000000000000000000000000000002354 131.0
YYD3_k127_2306087_16 Transcriptional regulator - - - 0.00000000000000000000000000000005161 132.0
YYD3_k127_2306087_2 efflux transmembrane transporter activity - - - 2.726e-220 708.0
YYD3_k127_2306087_3 FtsX-like permease family - - - 4.486e-212 689.0
YYD3_k127_2306087_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 473.0
YYD3_k127_2306087_5 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 446.0
YYD3_k127_2306087_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 433.0
YYD3_k127_2306087_7 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 387.0
YYD3_k127_2306087_8 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 358.0
YYD3_k127_2306087_9 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 365.0
YYD3_k127_2308574_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.612e-202 639.0
YYD3_k127_2308574_1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 2.703e-200 631.0
YYD3_k127_2308574_10 HD domain - - - 0.00000000000000000000000000000000000000000000000000000005708 204.0
YYD3_k127_2308574_11 PFAM Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000006899 181.0
YYD3_k127_2308574_12 Involved in DNA repair and RecF pathway recombination K03474,K03584 GO:0008150,GO:0009314,GO:0009628,GO:0050896 2.6.99.2 0.000000000000000000000000000000000005028 146.0
YYD3_k127_2308574_13 - - - - 0.00000000000000000001256 96.0
YYD3_k127_2308574_14 histidine kinase A domain protein - - - 0.00000000000000006542 94.0
YYD3_k127_2308574_15 peptidyl-tyrosine sulfation - - - 0.00000001509 66.0
YYD3_k127_2308574_16 PFAM Fibronectin, type III domain K01179,K06882 - 3.2.1.4 0.0000003601 61.0
YYD3_k127_2308574_17 - - - - 0.00001579 49.0
YYD3_k127_2308574_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 543.0
YYD3_k127_2308574_3 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000855 475.0
YYD3_k127_2308574_4 Protein of unknown function (DUF1343) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 419.0
YYD3_k127_2308574_5 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 451.0
YYD3_k127_2308574_6 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000003539 250.0
YYD3_k127_2308574_7 Permease, YjgP YjgQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001431 270.0
YYD3_k127_2308574_8 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000002104 244.0
YYD3_k127_2308574_9 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000038 216.0
YYD3_k127_2309394_0 Belongs to the glycosyl hydrolase 43 family - - - 6.509e-216 679.0
YYD3_k127_2309394_1 PFAM Major Facilitator Superfamily K08191 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 581.0
YYD3_k127_2309394_2 SAF K01685 - 4.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 392.0
YYD3_k127_2309394_3 glucosamine-6-phosphate deaminase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 334.0
YYD3_k127_2309394_4 - - - - 0.00000000000000000000000000000001828 130.0
YYD3_k127_2309936_0 iron-nicotianamine transmembrane transporter activity - - - 6.101e-288 908.0
YYD3_k127_2309936_1 NADH oxidase - - - 7.644e-210 662.0
YYD3_k127_2309936_10 Prokaryotic N-terminal methylation motif K02650 - - 0.000000000000000000000000000000000003542 142.0
YYD3_k127_2309936_11 YHS domain K06966 - 3.2.2.10 0.0000000000000000000000000000000001376 139.0
YYD3_k127_2309936_12 Carbohydrate family 9 binding domain-like - - - 0.000000000000000000000000000000001226 138.0
YYD3_k127_2309936_13 PFAM response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000001507 107.0
YYD3_k127_2309936_14 Zinc carboxypeptidase - - - 0.000000000000000000302 94.0
YYD3_k127_2309936_15 - - - - 0.0000000000000003898 82.0
YYD3_k127_2309936_2 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 514.0
YYD3_k127_2309936_3 Aminotransferase class-V K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 474.0
YYD3_k127_2309936_4 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 409.0
YYD3_k127_2309936_5 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006451 396.0
YYD3_k127_2309936_6 NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 373.0
YYD3_k127_2309936_7 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 360.0
YYD3_k127_2309936_8 PAS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002408 299.0
YYD3_k127_2309936_9 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000009097 228.0
YYD3_k127_2315040_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000001971 177.0
YYD3_k127_2315040_1 Nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000004649 171.0
YYD3_k127_2315040_2 polysaccharide biosynthetic process - - - 0.00000000000000000000000000000000000008608 160.0
YYD3_k127_2315040_3 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase - - - 0.00000000000000007837 93.0
YYD3_k127_2315040_4 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000000000002065 90.0
YYD3_k127_2315040_5 Heparinase II/III N-terminus - - - 0.0000000006073 68.0
YYD3_k127_2346349_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.575e-276 858.0
YYD3_k127_2346349_1 Phosphoenolpyruvate carboxykinase K01610 - 4.1.1.49 4.453e-211 668.0
YYD3_k127_2346349_10 spore germination - - - 0.0000000000000000000000000000000000000000000000000000000000000006314 229.0
YYD3_k127_2346349_11 - - - - 0.000000000000000000000000000000000000000000000000000000000000001492 231.0
YYD3_k127_2346349_12 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000002515 227.0
YYD3_k127_2346349_13 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.00000000000000000000000000000000000000000000000000001185 194.0
YYD3_k127_2346349_14 - - - - 0.0000000000000000000000000000000000000000000000006162 183.0
YYD3_k127_2346349_15 HIT domain K02503 - - 0.0000000000000000000000000000000000002251 144.0
YYD3_k127_2346349_16 Ferredoxin K00529,K04755,K08952,K08953,K08954,K15765 GO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0046858 1.18.1.3 0.00000000000000000000000000000008879 136.0
YYD3_k127_2346349_17 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.000000000000000001419 88.0
YYD3_k127_2346349_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 488.0
YYD3_k127_2346349_3 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 374.0
YYD3_k127_2346349_4 SpoVR like protein K06415 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002679 345.0
YYD3_k127_2346349_5 signal sequence binding K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 294.0
YYD3_k127_2346349_6 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 289.0
YYD3_k127_2346349_7 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K08070 - 1.3.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008925 291.0
YYD3_k127_2346349_8 PFAM cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001091 258.0
YYD3_k127_2346349_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000006811 237.0
YYD3_k127_2386226_0 C-terminal, D2-small domain, of ClpB protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005229 459.0
YYD3_k127_2386226_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000002473 70.0
YYD3_k127_2386226_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.000000121 62.0
YYD3_k127_2393771_0 cellulose binding - - - 0.0 1555.0
YYD3_k127_2393771_1 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 423.0
YYD3_k127_2393771_2 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000003875 148.0
YYD3_k127_2393771_3 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.000000000000000000000000008989 116.0
YYD3_k127_2397063_0 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 576.0
YYD3_k127_2397063_1 FAD binding domain - - - 0.0000004715 59.0
YYD3_k127_2406904_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.215e-235 739.0
YYD3_k127_2406904_1 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 497.0
YYD3_k127_2406904_2 virion core protein (lumpy skin disease virus) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 405.0
YYD3_k127_2406904_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008148 300.0
YYD3_k127_2406904_4 Methyltransferase domain - - - 0.00000000000000000000000000000000001836 145.0
YYD3_k127_2406904_5 VanZ like family - - - 0.00000000000000000000000000156 118.0
YYD3_k127_2406904_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000001424 107.0
YYD3_k127_2406904_7 FAD binding domain K21401 - 1.3.99.38 0.0000000000000000000003783 101.0
YYD3_k127_2406904_8 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000246 59.0
YYD3_k127_2406904_9 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00002373 52.0
YYD3_k127_2407031_0 Tricorn protease homolog - - - 0.0 1326.0
YYD3_k127_2407031_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1296.0
YYD3_k127_2407031_10 Belongs to the MlaE permease family K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000006165 233.0
YYD3_k127_2407031_11 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000003245 222.0
YYD3_k127_2407031_12 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000006411 196.0
YYD3_k127_2407031_13 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000000002048 188.0
YYD3_k127_2407031_14 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000003916 158.0
YYD3_k127_2407031_15 Helix-turn-helix domain K03088 - - 0.000000000000000000000000000000007444 134.0
YYD3_k127_2407031_16 - - - - 0.000000001615 66.0
YYD3_k127_2407031_17 - - - - 0.0007567 47.0
YYD3_k127_2407031_2 Belongs to the aldehyde dehydrogenase family K00128,K00146 - 1.2.1.3,1.2.1.39 1.903e-198 630.0
YYD3_k127_2407031_3 PFAM cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 398.0
YYD3_k127_2407031_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006767 350.0
YYD3_k127_2407031_5 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 346.0
YYD3_k127_2407031_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 332.0
YYD3_k127_2407031_7 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005947 285.0
YYD3_k127_2407031_8 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001215 249.0
YYD3_k127_2407031_9 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000006892 241.0
YYD3_k127_2410661_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 2.165e-300 938.0
YYD3_k127_2410661_1 5'-nucleotidase, C-terminal domain K01119 - 3.1.3.6,3.1.4.16 5.666e-209 663.0
YYD3_k127_2410661_10 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004288 284.0
YYD3_k127_2410661_11 Phage Tail Collar Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003195 237.0
YYD3_k127_2410661_12 Phage Tail Collar Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001449 230.0
YYD3_k127_2410661_13 lipoprotein localization to outer membrane K02004 - - 0.000000000000000000000000000000000000000000000002995 186.0
YYD3_k127_2410661_14 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000008987 143.0
YYD3_k127_2410661_15 FR47-like protein - - - 0.000000000000000000000000000000008455 133.0
YYD3_k127_2410661_16 chaperone-mediated protein folding - - - 0.0000000000000000000006605 99.0
YYD3_k127_2410661_17 - - - - 0.00000000000131 71.0
YYD3_k127_2410661_18 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07027 - - 0.00000000008522 74.0
YYD3_k127_2410661_19 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000001773 61.0
YYD3_k127_2410661_2 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 567.0
YYD3_k127_2410661_20 - - - - 0.00003848 52.0
YYD3_k127_2410661_3 Acyl-CoA dehydrogenase, C-terminal domain K00248,K09478 - 1.3.8.1,1.3.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009028 547.0
YYD3_k127_2410661_4 beta-galactosidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 487.0
YYD3_k127_2410661_5 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 438.0
YYD3_k127_2410661_6 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 415.0
YYD3_k127_2410661_7 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006011 353.0
YYD3_k127_2410661_8 Coenzyme A transferase K01040 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 319.0
YYD3_k127_2410661_9 Phage Tail Collar Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007149 264.0
YYD3_k127_2413585_0 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 563.0
YYD3_k127_2413585_1 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000001555 194.0
YYD3_k127_2413585_2 DoxX-like family - - - 0.00000000000000000000000000000000000000000001525 165.0
YYD3_k127_2413585_4 protein conserved in bacteria K04750 - - 0.0000002114 52.0
YYD3_k127_2436973_0 Amino acid permease K03294 - - 4.198e-205 649.0
YYD3_k127_2436973_1 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 587.0
YYD3_k127_2436973_10 MFS/sugar transport protein - - - 0.00000000000000000000000000000000000000000000000000007639 192.0
YYD3_k127_2436973_11 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.000000000000000000001723 108.0
YYD3_k127_2436973_12 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000344 82.0
YYD3_k127_2436973_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 522.0
YYD3_k127_2436973_3 DNA polymerase K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 454.0
YYD3_k127_2436973_4 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 432.0
YYD3_k127_2436973_5 Glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007934 399.0
YYD3_k127_2436973_6 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004397 347.0
YYD3_k127_2436973_7 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001947 293.0
YYD3_k127_2436973_8 Glycosyl transferase family 2 K16870 - 2.4.1.289 0.00000000000000000000000000000000000000000000000000000000000001789 230.0
YYD3_k127_2436973_9 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000001012 207.0
YYD3_k127_2440810_0 O-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 413.0
YYD3_k127_2440810_1 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000003731 239.0
YYD3_k127_2440810_2 Low affinity iron permease - - - 0.00000000000000000000000000000000000000000000001749 176.0
YYD3_k127_2440810_3 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000008171 181.0
YYD3_k127_244912_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 0.0 1386.0
YYD3_k127_244912_1 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.0 1327.0
YYD3_k127_244912_10 dTDP biosynthetic process K00943,K01585 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.9,4.1.1.19 0.00007283 48.0
YYD3_k127_244912_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 2.062e-227 734.0
YYD3_k127_244912_3 Protein tyrosine kinase - - - 1.925e-221 717.0
YYD3_k127_244912_4 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 604.0
YYD3_k127_244912_5 Glyoxalase-like domain K08234 - - 0.00000000000000000000000000000000000000000000000000000002745 202.0
YYD3_k127_244912_6 IstB-like ATP binding protein K02315 - - 0.0000000000000000000000000000000000000000000000000000002335 203.0
YYD3_k127_244912_7 CoA binding domain K06929 - - 0.00000000000000000000000000000000000000000008469 163.0
YYD3_k127_244912_8 molybdenum cofactor K03638,K03831 - 2.7.7.75 0.0000000000000000000000000000000000000000001175 164.0
YYD3_k127_244912_9 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000003612 55.0
YYD3_k127_2476174_0 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 1.031e-242 764.0
YYD3_k127_2476174_1 RQC K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 520.0
YYD3_k127_2476174_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000654 248.0
YYD3_k127_2476174_11 2 iron, 2 sulfur cluster binding K00334,K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000832 192.0
YYD3_k127_2476174_12 PFAM Endonuclease Exonuclease phosphatase K07004 - - 0.000000000000000000000000000000000000000000001544 189.0
YYD3_k127_2476174_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000004337 161.0
YYD3_k127_2476174_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000003622 155.0
YYD3_k127_2476174_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000001964 132.0
YYD3_k127_2476174_16 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000000001223 121.0
YYD3_k127_2476174_17 bacterial-type flagellum-dependent cell motility K03641 - - 0.0000000000000000001704 104.0
YYD3_k127_2476174_18 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000008051 76.0
YYD3_k127_2476174_19 - - - - 0.0000000000001516 81.0
YYD3_k127_2476174_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 506.0
YYD3_k127_2476174_20 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.00000000272 64.0
YYD3_k127_2476174_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 493.0
YYD3_k127_2476174_4 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 471.0
YYD3_k127_2476174_5 PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 464.0
YYD3_k127_2476174_6 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 422.0
YYD3_k127_2476174_7 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 351.0
YYD3_k127_2476174_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 350.0
YYD3_k127_2476174_9 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007313 343.0
YYD3_k127_2522045_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 430.0
YYD3_k127_2522045_1 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009537 355.0
YYD3_k127_2522045_10 Belongs to the peptidase S1C family - - - 0.0006215 44.0
YYD3_k127_2522045_2 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001397 276.0
YYD3_k127_2522045_3 Domain of unknown function (DUF4394) - - - 0.000000000000000000000000000000000000000000000000000000000000000000003502 245.0
YYD3_k127_2522045_4 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000002024 188.0
YYD3_k127_2522045_5 - - - - 0.000000000000000000000000000000000000000001247 160.0
YYD3_k127_2522045_6 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000004666 160.0
YYD3_k127_2522045_7 heat shock protein DnaJ K05516 - - 0.00000000000000000000000000000000003211 141.0
YYD3_k127_2522045_8 - - - - 0.0000000000000000000000000003161 120.0
YYD3_k127_2522045_9 Formamidopyrimidine-DNA glycosylase H2TH domain K05522 GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 4.2.99.18 0.00002514 51.0
YYD3_k127_25545_0 Domain of unknown function (DUF4037) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 347.0
YYD3_k127_25545_1 PFAM ABC transporter related K01990,K16907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007585 309.0
YYD3_k127_25545_2 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000117 189.0
YYD3_k127_25545_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000001573 119.0
YYD3_k127_25545_4 TPM domain K06872 - - 0.0000000000000000001332 96.0
YYD3_k127_25545_5 Protein of unknown function (DUF4085) - - - 0.00002357 53.0
YYD3_k127_25545_6 peroxiredoxin activity K03564 - 1.11.1.15 0.00003024 47.0
YYD3_k127_2558698_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 1.531e-254 808.0
YYD3_k127_2558698_1 Pfam:KaiC K08482 - - 2.626e-227 718.0
YYD3_k127_2558698_10 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000001796 236.0
YYD3_k127_2558698_11 PFAM KaiB domain K08481 - - 0.0000000000000000000000000000000000000003206 151.0
YYD3_k127_2558698_12 Protein of unknown function (DUF4242) - - - 0.00000000000000000000000000000000000001757 145.0
YYD3_k127_2558698_13 KaiB K08481 - - 0.0000000000000000000000000000376 123.0
YYD3_k127_2558698_2 Elongator protein 3, MiaB family, Radical SAM - - - 1.277e-217 685.0
YYD3_k127_2558698_3 Prolyl oligopeptidase family - - - 3.072e-199 641.0
YYD3_k127_2558698_4 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004072 499.0
YYD3_k127_2558698_5 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008501 471.0
YYD3_k127_2558698_6 beta' subunit K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 385.0
YYD3_k127_2558698_7 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005994 396.0
YYD3_k127_2558698_8 Domains in Na-Ca exchangers and integrin-beta4 K01406 - 3.4.24.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003924 307.0
YYD3_k127_2558698_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004077 276.0
YYD3_k127_2594389_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 9.782e-261 818.0
YYD3_k127_2594389_1 Sodium:solute symporter family - - - 4.127e-241 758.0
YYD3_k127_2594389_10 symporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 389.0
YYD3_k127_2594389_11 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001379 286.0
YYD3_k127_2594389_12 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005831 281.0
YYD3_k127_2594389_13 transcriptional regulator sugar kinase K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000004086 228.0
YYD3_k127_2594389_14 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000005215 181.0
YYD3_k127_2594389_15 LysR substrate binding domain K21703 - - 0.000000000000000000000000000000000000002661 158.0
YYD3_k127_2594389_16 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00000000000000000000000000000000001422 148.0
YYD3_k127_2594389_17 AMP-binding enzyme C-terminal domain - - - 0.0000000001828 65.0
YYD3_k127_2594389_18 Bacterial regulatory proteins, gntR family - - - 0.0000004291 56.0
YYD3_k127_2594389_19 SMART Rhodanese domain protein - - - 0.000004207 49.0
YYD3_k127_2594389_2 Alpha/beta hydrolase family - - - 5.802e-212 680.0
YYD3_k127_2594389_3 Domain of unknown function (DUF3536) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 512.0
YYD3_k127_2594389_4 Peptidase family S58 K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008771 497.0
YYD3_k127_2594389_5 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 490.0
YYD3_k127_2594389_6 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006476 457.0
YYD3_k127_2594389_7 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006245 454.0
YYD3_k127_2594389_8 ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 417.0
YYD3_k127_2594389_9 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005115 408.0
YYD3_k127_2612557_0 Replicative DNA helicase K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 444.0
YYD3_k127_2612557_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 403.0
YYD3_k127_2612557_10 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000000004066 113.0
YYD3_k127_2612557_11 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000001018 97.0
YYD3_k127_2612557_12 Cysteine-rich secretory protein family - - - 0.000000000000000007876 93.0
YYD3_k127_2612557_13 Peptidase M16 - - - 0.00000004823 66.0
YYD3_k127_2612557_14 - - - - 0.0000002099 53.0
YYD3_k127_2612557_15 - - - - 0.0001961 51.0
YYD3_k127_2612557_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000003585 206.0
YYD3_k127_2612557_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000001961 194.0
YYD3_k127_2612557_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000009287 194.0
YYD3_k127_2612557_5 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000004208 180.0
YYD3_k127_2612557_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.00000000000000000000000000000000000000000005631 171.0
YYD3_k127_2612557_7 binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000000002868 155.0
YYD3_k127_2612557_8 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000001857 159.0
YYD3_k127_2612557_9 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.000000000000000000000000000002814 137.0
YYD3_k127_2622424_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 398.0
YYD3_k127_2622424_1 YbbR-like protein - - - 0.000000000000000000000007425 112.0
YYD3_k127_2624754_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 556.0
YYD3_k127_2624754_1 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008234 469.0
YYD3_k127_2624754_10 OsmC-like protein K06889,K07397 - - 0.00000000000000000000000000000000000009644 149.0
YYD3_k127_2624754_11 Cupin 2, conserved barrel domain protein K16953,K19547 - 4.4.1.3,5.3.3.19 0.00000000000000000000000006066 116.0
YYD3_k127_2624754_12 PFAM regulatory protein, MerR - - - 0.000000000000000000000000198 111.0
YYD3_k127_2624754_13 - - - - 0.000000004543 65.0
YYD3_k127_2624754_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 430.0
YYD3_k127_2624754_3 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 413.0
YYD3_k127_2624754_4 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000002079 275.0
YYD3_k127_2624754_5 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000005745 231.0
YYD3_k127_2624754_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000003072 188.0
YYD3_k127_2624754_7 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000003385 179.0
YYD3_k127_2624754_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000005517 174.0
YYD3_k127_2624754_9 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000002223 182.0
YYD3_k127_2625576_0 glycoside hydrolase family 38 K01191 - 3.2.1.24 0.0 1442.0
YYD3_k127_2625576_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.127e-276 873.0
YYD3_k127_2625576_10 Peptidase dimerisation domain K01438 - 3.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005088 404.0
YYD3_k127_2625576_11 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 389.0
YYD3_k127_2625576_12 PRMT5 arginine-N-methyltransferase K11434 - 2.1.1.319 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 366.0
YYD3_k127_2625576_13 D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003638 349.0
YYD3_k127_2625576_14 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 303.0
YYD3_k127_2625576_15 HPr kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 299.0
YYD3_k127_2625576_16 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009488 274.0
YYD3_k127_2625576_17 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000001147 271.0
YYD3_k127_2625576_18 Molybdopterin converting factor subunit K03635,K21142 - 2.8.1.12 0.000000000000000000000000000000000000000000000000000001067 199.0
YYD3_k127_2625576_19 - - - - 0.000000000000000000000000000000000000000000000000000006321 202.0
YYD3_k127_2625576_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 3.089e-226 709.0
YYD3_k127_2625576_20 Uncharacterised nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000000001542 186.0
YYD3_k127_2625576_21 Putative esterase K03930 - - 0.000000000000000000000000000000000000000706 158.0
YYD3_k127_2625576_22 ATP-dependent protease La (LON) substrate-binding domain K01338 - 3.4.21.53 0.000000000000000000000000000000000000004119 157.0
YYD3_k127_2625576_23 - - - - 0.00000000000000000000000000000000001812 146.0
YYD3_k127_2625576_24 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.000000000000000000000002926 111.0
YYD3_k127_2625576_25 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.0000000000000000000004158 100.0
YYD3_k127_2625576_26 - - - - 0.000000000000000000114 102.0
YYD3_k127_2625576_27 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000002107 81.0
YYD3_k127_2625576_3 ATPases associated with a variety of cellular activities K06147 - - 1.668e-205 655.0
YYD3_k127_2625576_4 ABC transporter K10441 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 592.0
YYD3_k127_2625576_5 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009226 483.0
YYD3_k127_2625576_6 Amidohydrolase family K05603 - 3.5.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 453.0
YYD3_k127_2625576_7 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005976 450.0
YYD3_k127_2625576_8 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 416.0
YYD3_k127_2625576_9 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 405.0
YYD3_k127_2638479_0 Prolyl oligopeptidase family - - - 3.741e-211 674.0
YYD3_k127_2638479_1 IgA Peptidase M64 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 617.0
YYD3_k127_2638479_10 PEP-utilising enzyme, N-terminal K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 390.0
YYD3_k127_2638479_11 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 378.0
YYD3_k127_2638479_12 RNA polymerase sigma-54 factor K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003794 346.0
YYD3_k127_2638479_13 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 335.0
YYD3_k127_2638479_14 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 315.0
YYD3_k127_2638479_15 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018065,GO:0018130,GO:0018160,GO:0018193,GO:0018198,GO:0019438,GO:0019538,GO:0033013,GO:0033014,GO:0034641,GO:0036211,GO:0042168,GO:0042440,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 299.0
YYD3_k127_2638479_16 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000743 279.0
YYD3_k127_2638479_17 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000101 258.0
YYD3_k127_2638479_18 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000005892 235.0
YYD3_k127_2638479_19 Metalloenzyme superfamily - - - 0.00000000000000000000000000000000000000000000000000000000006211 216.0
YYD3_k127_2638479_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 610.0
YYD3_k127_2638479_20 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000598 213.0
YYD3_k127_2638479_21 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.00000000000000000000000000000000000000000000000000000001481 207.0
YYD3_k127_2638479_22 Domain of unknown function (DUF4162) K01990 - - 0.00000000000000000000000000000000000000000000000000008891 196.0
YYD3_k127_2638479_23 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000001155 196.0
YYD3_k127_2638479_24 Putative zinc-finger - - - 0.000000000000000000000000000000000000000000000000008839 192.0
YYD3_k127_2638479_25 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000716 183.0
YYD3_k127_2638479_26 Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000000000008574 181.0
YYD3_k127_2638479_27 Transport permease protein K01992 - - 0.0000000000000000000000000000000000003542 152.0
YYD3_k127_2638479_28 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.000000000000000000000000000000002417 135.0
YYD3_k127_2638479_29 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000000919 133.0
YYD3_k127_2638479_3 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 516.0
YYD3_k127_2638479_30 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.000000000000000000000000002415 130.0
YYD3_k127_2638479_31 NfeD-like C-terminal, partner-binding - - - 0.00000000000000000002238 97.0
YYD3_k127_2638479_32 von Willebrand factor, type A K07114 - - 0.000000000000000004004 98.0
YYD3_k127_2638479_34 chitin binding - - - 0.0005251 48.0
YYD3_k127_2638479_35 - - - - 0.0005723 46.0
YYD3_k127_2638479_4 Cys/Met metabolism PLP-dependent enzyme K01760,K17217 - 4.4.1.1,4.4.1.2,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 495.0
YYD3_k127_2638479_5 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 475.0
YYD3_k127_2638479_6 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 462.0
YYD3_k127_2638479_7 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008103 445.0
YYD3_k127_2638479_8 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 428.0
YYD3_k127_2638479_9 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006006 378.0
YYD3_k127_2651051_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0 1075.0
YYD3_k127_2651051_1 Cytochrome c-type biogenesis protein CcmF K02198 - - 1.172e-313 972.0
YYD3_k127_2651051_10 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.000009598 49.0
YYD3_k127_2651051_11 PQQ enzyme repeat - - - 0.00001238 58.0
YYD3_k127_2651051_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 359.0
YYD3_k127_2651051_3 Redoxin K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000992 246.0
YYD3_k127_2651051_4 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000003888 246.0
YYD3_k127_2651051_5 Cytochrome c-type biogenesis protein K02200 - - 0.000000000000000000000000000000000000000000000000000000000002638 220.0
YYD3_k127_2651051_6 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000001034 206.0
YYD3_k127_2651051_7 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000000001585 200.0
YYD3_k127_2651051_8 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000000000000773 166.0
YYD3_k127_2651051_9 PFAM Transcription regulator MerR DNA binding K08365,K13638 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0001121,GO:0001130,GO:0001131,GO:0001140,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045893,GO:0045935,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000000000002103 112.0
YYD3_k127_2655779_0 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 554.0
YYD3_k127_2655779_1 PFAM TonB-dependent Receptor Plug - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 563.0
YYD3_k127_2655779_2 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 526.0
YYD3_k127_2655779_3 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 495.0
YYD3_k127_2655779_4 Peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 394.0
YYD3_k127_2655779_5 Endonuclease Exonuclease Phosphatase - - - 0.00000000000000000000000000000000000000000000000003999 188.0
YYD3_k127_2666454_0 Protein of unknown function (DUF434) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007473 276.0
YYD3_k127_2666454_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001769 278.0
YYD3_k127_2666454_2 Two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.0000000000000000000000000000000000000007143 155.0
YYD3_k127_2666454_3 Transcriptional regulatory protein, C terminal - - - 0.000000000000000001322 93.0
YYD3_k127_2666454_4 Membrane - - - 0.00000000468 64.0
YYD3_k127_2670071_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001899 606.0
YYD3_k127_2670071_1 hydrolase, family 3 K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007549 604.0
YYD3_k127_2670071_2 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 585.0
YYD3_k127_2670071_3 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 492.0
YYD3_k127_2670071_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.0003158 49.0
YYD3_k127_2678095_0 PFAM Fimbrial assembly family protein K02663 - - 0.000005633 53.0
YYD3_k127_2678095_1 Involved in the tonB-independent uptake of proteins - - - 0.00007341 54.0
YYD3_k127_2679955_0 domain protein K01179,K12567,K20276,K21449 - 2.7.11.1,3.2.1.4 0.000000000000000386 92.0
YYD3_k127_2679955_1 Baseplate assembly protein - - - 0.0000000000000006895 81.0
YYD3_k127_2679955_2 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.00000000001694 77.0
YYD3_k127_2679955_3 DNA ligase D, 3'-phosphoesterase domain K01971 - 6.5.1.1 0.0000000001754 65.0
YYD3_k127_2694503_0 Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites) K03653 - 4.2.99.18 0.00000000000000000000000000000000003447 142.0
YYD3_k127_2694503_1 peptidyl-tyrosine sulfation - - - 0.0000000001497 73.0
YYD3_k127_2742866_0 Cytochrome c - - - 3.38e-318 1011.0
YYD3_k127_2742866_1 TIGRFAM magnesium chelatase, H subunit K03403 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 531.0
YYD3_k127_2742866_10 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000001606 173.0
YYD3_k127_2742866_11 heme a metabolic process K02259,K03110 - - 0.00000000000000000000000000000000000000000002363 174.0
YYD3_k127_2742866_12 cell redox homeostasis K03671 - - 0.000000000005317 68.0
YYD3_k127_2742866_2 TIGRFAM magnesium chelatase, H subunit K03403 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 522.0
YYD3_k127_2742866_3 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 468.0
YYD3_k127_2742866_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003487 441.0
YYD3_k127_2742866_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 307.0
YYD3_k127_2742866_6 PFAM cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001323 262.0
YYD3_k127_2742866_7 oxidoreductase activity, acting on diphenols and related substances as donors K02636,K03886 - 1.10.9.1 0.00000000000000000000000000000000000000000000000000000000000000000001647 238.0
YYD3_k127_2742866_8 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000000000005528 209.0
YYD3_k127_2742866_9 AAA domain (dynein-related subfamily) K03404,K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000008336 204.0
YYD3_k127_276229_0 Ftsk_gamma K03466 - - 1.739e-194 635.0
YYD3_k127_276229_1 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 529.0
YYD3_k127_276229_10 COGs COG1975 Xanthine and CO dehydrogenase maturation factor XdhC CoxF family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000002899 231.0
YYD3_k127_276229_11 MOFRL family K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000005998 236.0
YYD3_k127_276229_12 XdhC and CoxI family K07402 - - 0.0000000000000000000000000000000000000000000000000000000004337 215.0
YYD3_k127_276229_13 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000001044 157.0
YYD3_k127_276229_14 Tetratricopeptide repeat - - - 0.000000000000000000000000000000008413 146.0
YYD3_k127_276229_15 outer membrane autotransporter barrel domain protein - - - 0.000000000000000000000000000000009666 138.0
YYD3_k127_276229_16 SUF system FeS assembly protein, NifU family K04488 - - 0.00000000000000000000000000000009081 128.0
YYD3_k127_276229_17 Cysteine dioxygenase type I K00456 - 1.13.11.20 0.000000000000000000001839 101.0
YYD3_k127_276229_18 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520,K11177 - 1.17.1.4,1.2.5.3 0.000000000000000000006307 92.0
YYD3_k127_276229_19 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000001782 81.0
YYD3_k127_276229_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 402.0
YYD3_k127_276229_20 - - - - 0.00000000002657 69.0
YYD3_k127_276229_21 receptor - - - 0.000001301 51.0
YYD3_k127_276229_3 Associated with various cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 379.0
YYD3_k127_276229_4 VWA domain containing CoxE-like protein K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 358.0
YYD3_k127_276229_5 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 287.0
YYD3_k127_276229_6 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006011 301.0
YYD3_k127_276229_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000008318 265.0
YYD3_k127_276229_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000001441 252.0
YYD3_k127_276229_9 Carbon-nitrogen hydrolase K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003206 264.0
YYD3_k127_2778646_0 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 623.0
YYD3_k127_2778646_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000001108 86.0
YYD3_k127_2789324_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 2.004e-274 862.0
YYD3_k127_2789324_1 serine threonine protein kinase K12132 - 2.7.11.1 1.453e-217 709.0
YYD3_k127_2789324_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000000008997 230.0
YYD3_k127_2789324_11 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000001109 228.0
YYD3_k127_2789324_12 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000006101 207.0
YYD3_k127_2789324_13 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000004952 203.0
YYD3_k127_2789324_14 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000161 175.0
YYD3_k127_2789324_15 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000001981 167.0
YYD3_k127_2789324_16 PFAM Metal-dependent phosphohydrolase, HD - - - 0.000000000000000000000000000000001378 138.0
YYD3_k127_2789324_17 Histidine kinase - - - 0.00000000000000000000000000000001666 138.0
YYD3_k127_2789324_18 Probable zinc-ribbon domain - - - 0.0000000000000000000005336 100.0
YYD3_k127_2789324_19 YGGT family K02221 - - 0.00000000006084 70.0
YYD3_k127_2789324_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972,K10754 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 9.415e-210 671.0
YYD3_k127_2789324_20 D12 class N6 adenine-specific DNA methyltransferase K07318 - 2.1.1.72 0.000000007555 67.0
YYD3_k127_2789324_21 Belongs to the UPF0235 family K09131 - - 0.0000001764 57.0
YYD3_k127_2789324_22 X-domain of DnaJ-containing - - - 0.000000348 63.0
YYD3_k127_2789324_23 Bacterial regulatory protein, Fis family - - - 0.00000508 54.0
YYD3_k127_2789324_3 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 435.0
YYD3_k127_2789324_4 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 391.0
YYD3_k127_2789324_5 peptidase dimerisation domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 377.0
YYD3_k127_2789324_6 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 321.0
YYD3_k127_2789324_7 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 320.0
YYD3_k127_2789324_8 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 309.0
YYD3_k127_2789324_9 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001331 283.0
YYD3_k127_2792054_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1025.0
YYD3_k127_2792054_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 1.324e-309 976.0
YYD3_k127_2792054_10 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006303 273.0
YYD3_k127_2792054_11 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002715 265.0
YYD3_k127_2792054_12 DEAD DEAH box helicase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008795 260.0
YYD3_k127_2792054_13 DSHCT - - - 0.000000000000000000000000000000000000000000000000000000000000000007131 248.0
YYD3_k127_2792054_14 Transglycosylase SLT domain K08309 - - 0.00000000000000000000000000000000000000000000000000000000000007646 239.0
YYD3_k127_2792054_15 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000006667 155.0
YYD3_k127_2792054_16 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000287 132.0
YYD3_k127_2792054_17 - - - - 0.000000000000000000000000000001741 135.0
YYD3_k127_2792054_18 nuclear chromosome segregation - - - 0.00000000000000000000000000008212 131.0
YYD3_k127_2792054_19 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000007076 113.0
YYD3_k127_2792054_2 PFAM aminotransferase, class I K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003357 537.0
YYD3_k127_2792054_20 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.0000000000000000000000306 104.0
YYD3_k127_2792054_21 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000006194 97.0
YYD3_k127_2792054_22 Regulatory protein, FmdB - - - 0.0000000000000000000107 94.0
YYD3_k127_2792054_23 KH domain K06960 - - 0.00000000000000006994 83.0
YYD3_k127_2792054_24 PFAM von Willebrand factor type A K07114,K12511 - - 0.0000000000000001674 91.0
YYD3_k127_2792054_25 phosphorelay sensor kinase activity - - - 0.00000000005894 65.0
YYD3_k127_2792054_26 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000009315 66.0
YYD3_k127_2792054_27 Transcriptional regulatory protein, C terminal - - - 0.0000000264 64.0
YYD3_k127_2792054_28 general stress protein - - - 0.000002593 55.0
YYD3_k127_2792054_3 imidazolonepropionase activity K00466 - 1.13.12.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 524.0
YYD3_k127_2792054_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 498.0
YYD3_k127_2792054_5 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 416.0
YYD3_k127_2792054_6 Domain of unknown function (DUF1972) K12996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 410.0
YYD3_k127_2792054_7 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 359.0
YYD3_k127_2792054_8 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 333.0
YYD3_k127_2792054_9 Glycosyl transferases group 1 K12994 - 2.4.1.349 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003281 288.0
YYD3_k127_2792514_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 5.428e-309 966.0
YYD3_k127_2792514_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 359.0
YYD3_k127_2792514_11 Thioredoxin-like - - - 0.0000000924 61.0
YYD3_k127_2792514_2 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006604 332.0
YYD3_k127_2792514_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 327.0
YYD3_k127_2792514_4 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 323.0
YYD3_k127_2792514_5 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 308.0
YYD3_k127_2792514_6 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000003055 218.0
YYD3_k127_2792514_7 translation initiation inhibitor, yjgF family - - - 0.00000000000000000000000000000001187 130.0
YYD3_k127_2792514_8 MobA-like NTP transferase domain - - - 0.000000000000000000000000000005462 127.0
YYD3_k127_2792514_9 - - - - 0.000000009923 59.0
YYD3_k127_2795_0 Urocanase Rossmann-like domain K01712 - 4.2.1.49 2.169e-272 846.0
YYD3_k127_2795_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 7.658e-267 845.0
YYD3_k127_2795_10 Cation transport regulator - - - 0.0000000000000000000000000000000000000000000000001344 182.0
YYD3_k127_2795_11 Transcriptional coactivator pterin dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000000000000000002649 176.0
YYD3_k127_2795_12 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000537 168.0
YYD3_k127_2795_14 DinB superfamily - - - 0.0000000000000000000000000000000006363 137.0
YYD3_k127_2795_15 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000000003271 135.0
YYD3_k127_2795_16 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000002257 123.0
YYD3_k127_2795_17 Glycosyl transferases group 1 - - - 0.000000000000000000000000008597 123.0
YYD3_k127_2795_18 4Fe-4S single cluster domain of Ferredoxin I - - - 0.00000000000000000000000001499 111.0
YYD3_k127_2795_19 - - - - 0.00000000000000000000000002303 109.0
YYD3_k127_2795_2 Aromatic amino acid lyase K01745 - 4.3.1.3 2.65e-199 632.0
YYD3_k127_2795_20 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000003346 100.0
YYD3_k127_2795_21 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000001883 96.0
YYD3_k127_2795_22 Rieske-like [2Fe-2S] domain K00363 - 1.7.1.15 0.0000000000000000004866 91.0
YYD3_k127_2795_23 Polymorphic membrane protein - - - 0.0000000000000008529 93.0
YYD3_k127_2795_24 Transcription factor zinc-finger K09981 - - 0.000000000005866 69.0
YYD3_k127_2795_25 - - - - 0.0000000004976 68.0
YYD3_k127_2795_26 CsbD-like - - - 0.000000002783 60.0
YYD3_k127_2795_27 Resolvase, N terminal domain - - - 0.00000005215 58.0
YYD3_k127_2795_28 Calx-beta domain K01179,K20628 - 3.2.1.4 0.0000001994 65.0
YYD3_k127_2795_3 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 614.0
YYD3_k127_2795_30 Putative esterase - - - 0.00002496 49.0
YYD3_k127_2795_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 368.0
YYD3_k127_2795_5 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001597 299.0
YYD3_k127_2795_6 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003232 262.0
YYD3_k127_2795_7 Predicted integral membrane protein (DUF2270) - - - 0.00000000000000000000000000000000000000000000000000000000000000006748 234.0
YYD3_k127_2795_8 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000000000000000004127 239.0
YYD3_k127_2795_9 TIGRFAM Outer membrane protein - - - 0.000000000000000000000000000000000000000000000000000001978 220.0
YYD3_k127_2795296_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 542.0
YYD3_k127_2795296_1 WD40 domain protein beta Propeller - - - 0.000000007581 59.0
YYD3_k127_288208_0 Heat shock 70 kDa protein K04043 - - 3.258e-233 736.0
YYD3_k127_288208_1 MviN-like protein K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 609.0
YYD3_k127_288208_10 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005823 265.0
YYD3_k127_288208_11 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000009165 262.0
YYD3_k127_288208_12 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000002194 232.0
YYD3_k127_288208_13 nucleotide metabolic process - - - 0.0000000000000000000000000000000000000000000000000000002723 203.0
YYD3_k127_288208_14 Disulphide isomerase - - - 0.000000000000000000000000000000000000000000000000000001146 196.0
YYD3_k127_288208_15 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000163 170.0
YYD3_k127_288208_16 Conserved hypothetical protein 95 - - - 0.000000000000000000000000000000000000000000195 165.0
YYD3_k127_288208_17 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.000000000000000000000000000000007253 136.0
YYD3_k127_288208_18 - - - - 0.0000000000000000000000000003083 118.0
YYD3_k127_288208_19 PFAM Uncharacterised protein family UPF0079, ATPase K06925 - - 0.000000000000000000000009207 107.0
YYD3_k127_288208_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 578.0
YYD3_k127_288208_20 Transcriptional regulator PadR-like family - - - 0.000000000000001054 81.0
YYD3_k127_288208_21 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000002729 74.0
YYD3_k127_288208_22 PEP-CTERM motif - - - 0.0000005788 60.0
YYD3_k127_288208_23 - - - - 0.0001765 46.0
YYD3_k127_288208_3 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 496.0
YYD3_k127_288208_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008381 413.0
YYD3_k127_288208_5 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409,K03070 GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 361.0
YYD3_k127_288208_6 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0052855,GO:0052856,GO:0052857 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 338.0
YYD3_k127_288208_7 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 310.0
YYD3_k127_288208_9 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003265 260.0
YYD3_k127_2888089_0 cellulose binding - - - 0.0 1344.0
YYD3_k127_2888089_1 helicase activity - - - 0.0 1056.0
YYD3_k127_2888089_10 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000000000000000000001892 191.0
YYD3_k127_2888089_11 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000001238 163.0
YYD3_k127_2888089_12 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000000000004221 86.0
YYD3_k127_2888089_13 Belongs to the peptidase M10A family K07761,K07999 GO:0001101,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016787,GO:0019538,GO:0031224,GO:0031225,GO:0032502,GO:0040007,GO:0042221,GO:0043170,GO:0044238,GO:0044425,GO:0044464,GO:0046686,GO:0048519,GO:0048580,GO:0048583,GO:0048589,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080186,GO:0140096,GO:1900055,GO:1900056,GO:1901564,GO:1901700,GO:1905622,GO:2000024,GO:2000026,GO:2000028,GO:2000241 - 0.00021 54.0
YYD3_k127_2888089_2 homoserine kinase activity K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007232 512.0
YYD3_k127_2888089_3 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007573 448.0
YYD3_k127_2888089_4 Bacterial extracellular solute-binding protein K02027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006166 390.0
YYD3_k127_2888089_5 Belongs to the ABC transporter superfamily K02010,K10112 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 363.0
YYD3_k127_2888089_6 glycerophosphodiester transmembrane transport K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 321.0
YYD3_k127_2888089_7 transmembrane transport K02025,K15771 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009675 278.0
YYD3_k127_2888089_8 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002495 274.0
YYD3_k127_2888089_9 homoserine kinase activity K00823,K07250 - 2.6.1.19,2.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000002202 258.0
YYD3_k127_290573_0 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 523.0
YYD3_k127_290573_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008563 530.0
YYD3_k127_290573_2 - K00003,K00058,K01754,K04517,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,1.3.1.12,4.3.1.19 0.0000000000000000000000000000005565 125.0
YYD3_k127_2924951_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.0 1349.0
YYD3_k127_2924951_1 PFAM Prolyl oligopeptidase family - - - 8.196e-278 867.0
YYD3_k127_2924951_10 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000014 232.0
YYD3_k127_2924951_11 - - - - 0.0000000000000000000000000000000000000000000000000000000000005304 221.0
YYD3_k127_2924951_12 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000002829 214.0
YYD3_k127_2924951_13 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000001357 168.0
YYD3_k127_2924951_14 - - - - 0.0000000000000000000000000000000000000000003609 179.0
YYD3_k127_2924951_15 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000108 167.0
YYD3_k127_2924951_16 - - - - 0.000000000000000000000000000000000000000004134 161.0
YYD3_k127_2924951_18 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000001142 145.0
YYD3_k127_2924951_19 Penicillinase repressor - - - 0.000000000000000000000000000000002146 132.0
YYD3_k127_2924951_2 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007822 551.0
YYD3_k127_2924951_20 bacterial-type flagellum-dependent cell motility - - - 0.00000000000000000000000000000008463 129.0
YYD3_k127_2924951_22 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.0000003542 61.0
YYD3_k127_2924951_3 FecR protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 482.0
YYD3_k127_2924951_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 430.0
YYD3_k127_2924951_5 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007696 421.0
YYD3_k127_2924951_6 TAP-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 344.0
YYD3_k127_2924951_7 phosphotransferase activity, carboxyl group as acceptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 325.0
YYD3_k127_2924951_8 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009359 299.0
YYD3_k127_2924951_9 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000001812 261.0
YYD3_k127_2934905_0 introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 317.0
YYD3_k127_2934905_1 Di-haem oxidoreductase, putative peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007272 282.0
YYD3_k127_2934905_2 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000000000000000000002657 248.0
YYD3_k127_2934905_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000002292 206.0
YYD3_k127_2934905_4 Evidence 4 Homologs of previously reported genes of K03975 - - 0.000000000001545 79.0
YYD3_k127_2936693_0 Transcriptional regulator K03603,K05799 - - 1.11e-214 698.0
YYD3_k127_2936693_1 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302 314.0
YYD3_k127_2936693_2 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000002777 145.0
YYD3_k127_2946954_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003543 603.0
YYD3_k127_2946954_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 531.0
YYD3_k127_2946954_10 Domain of unknown function (DUF4870) - - - 0.0000000000000000000261 96.0
YYD3_k127_2946954_11 - - - - 0.0000000000000000005584 97.0
YYD3_k127_2946954_12 Carboxypeptidase regulatory-like domain - - - 0.000000000000003178 89.0
YYD3_k127_2946954_13 Protein of unknown function (DUF4019) - - - 0.0004221 50.0
YYD3_k127_2946954_2 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 423.0
YYD3_k127_2946954_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 360.0
YYD3_k127_2946954_4 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 348.0
YYD3_k127_2946954_5 Enoyl-CoA hydratase K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002056 272.0
YYD3_k127_2946954_6 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004216 274.0
YYD3_k127_2946954_7 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002117 221.0
YYD3_k127_2946954_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000004012 190.0
YYD3_k127_2946954_9 transcriptional - - - 0.000000000000000000006397 98.0
YYD3_k127_296786_0 Tetratricopeptide repeat - - - 1.019e-228 744.0
YYD3_k127_296786_1 tRNA synthetases class I (E and Q), catalytic domain K01885 - 6.1.1.17 1.058e-205 653.0
YYD3_k127_296786_2 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 447.0
YYD3_k127_2981424_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 623.0
YYD3_k127_2981424_1 D-aminopeptidase K16203 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003964 265.0
YYD3_k127_2986887_0 Belongs to the 5'-nucleotidase family K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 532.0
YYD3_k127_2986887_1 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 402.0
YYD3_k127_2986887_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 354.0
YYD3_k127_2986887_3 hydrolase of the alpha beta K07018 - - 0.000000000000000000000000000000000000000000000002326 180.0
YYD3_k127_2986887_4 photosynthesis - - - 0.000000000000000000000000000000000000000004182 160.0
YYD3_k127_2986887_5 Male sterility protein - - - 0.000000000000000000000000000000000002137 144.0
YYD3_k127_2986887_6 Thioesterase superfamily K10806 - - 0.0000000000000000000000000000005967 126.0
YYD3_k127_2986887_7 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000113 104.0
YYD3_k127_3000363_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 1.074e-199 634.0
YYD3_k127_3000363_1 Hydantoinase/oxoprolinase K01473 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 580.0
YYD3_k127_3000363_10 von Willebrand factor (vWF) type A domain K02448 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 334.0
YYD3_k127_3000363_2 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 562.0
YYD3_k127_3000363_3 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 436.0
YYD3_k127_3000363_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 432.0
YYD3_k127_3000363_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 412.0
YYD3_k127_3000363_6 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007397 417.0
YYD3_k127_3000363_7 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 376.0
YYD3_k127_3000363_8 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 325.0
YYD3_k127_3000363_9 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 334.0
YYD3_k127_3070365_0 Carboxypeptidase regulatory-like domain - - - 0.0 1178.0
YYD3_k127_3070365_1 hydrolase, family 3 K05349 - 3.2.1.21 3.157e-271 854.0
YYD3_k127_3070365_2 4'-phosphopantetheinyl transferase superfamily K00997,K06133 - 2.7.8.7 0.000000000000000000000000000000000000000000000000000000000000143 221.0
YYD3_k127_3070365_3 Putative glucoamylase - - - 0.00000000000000000000001291 104.0
YYD3_k127_3087594_0 GMC oxidoreductase - - - 3.409e-286 890.0
YYD3_k127_3087594_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004547 497.0
YYD3_k127_3087594_2 Tricorn protease homolog K08676 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 386.0
YYD3_k127_3087594_3 - - - - 0.00000000000000000000000000000000000000000000000000000000006765 207.0
YYD3_k127_3087594_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000003533 162.0
YYD3_k127_3101805_0 hydrolase activity, acting on ester bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009484 364.0
YYD3_k127_3101805_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 345.0
YYD3_k127_3101805_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000002002 160.0
YYD3_k127_3101805_3 Cytochrome c biogenesis protein K06196 - - 0.00000000000000000000000000000000001634 148.0
YYD3_k127_3101805_4 Thioredoxin-like - - - 0.0000000000000000006423 98.0
YYD3_k127_3101805_5 PFAM AhpC TSA family - - - 0.0001863 52.0
YYD3_k127_3114127_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 567.0
YYD3_k127_3114127_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008976 542.0
YYD3_k127_3114127_10 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000000000006904 213.0
YYD3_k127_3114127_11 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000000000000000000000000000000000000000004534 173.0
YYD3_k127_3114127_12 galactose-6-phosphate isomerase activity K00761,K01808 - 2.4.2.9,5.3.1.6 0.000000000000000000000000000000000000000005543 164.0
YYD3_k127_3114127_13 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.00000000000000001663 94.0
YYD3_k127_3114127_15 von Willebrand factor, type A - - - 0.000002018 52.0
YYD3_k127_3114127_16 oxidoreductase activity - - - 0.00006612 46.0
YYD3_k127_3114127_2 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 457.0
YYD3_k127_3114127_3 dna ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 432.0
YYD3_k127_3114127_4 Ribonuclease HII K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006974 379.0
YYD3_k127_3114127_5 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 332.0
YYD3_k127_3114127_6 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 294.0
YYD3_k127_3114127_7 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001292 275.0
YYD3_k127_3114127_8 Phosphoribosyl transferase domain K00760,K15780 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.2.8,6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000004986 228.0
YYD3_k127_3114127_9 DNA ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000008455 225.0
YYD3_k127_3164076_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 423.0
YYD3_k127_3164076_1 Activator of Hsp90 ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006499 261.0
YYD3_k127_3164076_2 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000004675 213.0
YYD3_k127_3164076_3 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000002107 227.0
YYD3_k127_3164076_4 Adenylate and Guanylate cyclase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000001333 216.0
YYD3_k127_3164076_5 - - - - 0.0000000000000000000000000000000000000000003529 165.0
YYD3_k127_3164076_6 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000004844 149.0
YYD3_k127_3164076_7 L,D-transpeptidase catalytic domain - - - 0.00000000000000000001154 95.0
YYD3_k127_3164076_8 Cupin 2, conserved barrel domain protein - - - 0.0000000000001541 78.0
YYD3_k127_3164076_9 PFAM von Willebrand factor type A K07114,K12511 - - 0.00000000136 69.0
YYD3_k127_3184154_0 symporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 455.0
YYD3_k127_3184154_1 Sodium:solute symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 453.0
YYD3_k127_3184154_2 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 458.0
YYD3_k127_3184154_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006461 336.0
YYD3_k127_3184154_4 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 293.0
YYD3_k127_3184154_5 transcriptional regulator (RpiR family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002609 262.0
YYD3_k127_3184154_6 Fumarylacetoacetate (FAA) hydrolase family K18336 - - 0.000000000000000000000000000000000000000000000000000000000000000005992 235.0
YYD3_k127_3184154_7 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000006536 234.0
YYD3_k127_3184154_8 efflux transmembrane transporter activity - - - 0.0000000000000000000002344 101.0
YYD3_k127_3184154_9 PFAM Uncharacterised BCR, COG1649 - - - 0.00000000000724 78.0
YYD3_k127_3193533_0 Horizontally Transferred TransMembrane Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 494.0
YYD3_k127_3193533_1 Integral membrane protein TerC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007694 325.0
YYD3_k127_3193533_10 YcxB-like protein - - - 0.000000001722 66.0
YYD3_k127_3193533_11 Ankyrin repeat - - - 0.00001907 57.0
YYD3_k127_3193533_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000183 240.0
YYD3_k127_3193533_3 response to abiotic stimulus K06867 - - 0.0000000000000000000000000000000000000000000000000000000000000000001561 245.0
YYD3_k127_3193533_4 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000007945 224.0
YYD3_k127_3193533_5 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000003422 187.0
YYD3_k127_3193533_6 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000001218 172.0
YYD3_k127_3193533_7 Pfam Ion transport protein K10716 - - 0.0000000000000000000000000000000000000000006734 160.0
YYD3_k127_3193533_8 DinB family - - - 0.000000000000000000000000009735 117.0
YYD3_k127_3193533_9 succinylglutamate desuccinylase aspartoacylase K06987 - - 0.0000000000000006298 84.0
YYD3_k127_3204680_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 3.014e-255 795.0
YYD3_k127_3204680_1 sequence-specific DNA binding K01697,K01738 GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008144,GO:0016020,GO:0019842,GO:0030170,GO:0030312,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0071944,GO:0097159,GO:1901363 2.5.1.47,4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009191 356.0
YYD3_k127_3204680_2 Ornithine cyclodeaminase/mu-crystallin family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004594 310.0
YYD3_k127_3204680_3 response to abiotic stimulus - - - 0.0000000000000000000000000000000000000005371 156.0
YYD3_k127_3209763_0 Serine threonine protein kinase K12132 - 2.7.11.1 2.216e-203 658.0
YYD3_k127_3209763_1 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 412.0
YYD3_k127_3209763_10 - - - - 0.00000005064 59.0
YYD3_k127_3209763_2 PFAM KWG Leptospira - - - 0.000000000000000000000000000000000000000000000000000000000000000000003348 248.0
YYD3_k127_3209763_3 Immunity protein 26 - - - 0.0000000000000000000000000000000000000000000007344 170.0
YYD3_k127_3209763_4 DinB family - - - 0.000000000000000000000000000000000000000004938 159.0
YYD3_k127_3209763_5 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.00000000000000000000000000000001234 128.0
YYD3_k127_3209763_6 - - - - 0.000000000000000008043 84.0
YYD3_k127_3209763_9 - - - - 0.00000000001332 71.0
YYD3_k127_3213159_0 permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006804 588.0
YYD3_k127_3213159_1 PFAM Peptidase S10, serine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 556.0
YYD3_k127_3213159_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 469.0
YYD3_k127_3213159_3 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 452.0
YYD3_k127_3213159_4 4Fe-4S dicluster domain K17723 - 1.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 443.0
YYD3_k127_3213159_5 Exodeoxyribonuclease iii K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 305.0
YYD3_k127_3213159_6 Peptidase dimerisation domain K01295 - 3.4.17.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004441 287.0
YYD3_k127_3213159_7 Amidohydrolase family K01464 - 3.5.2.2 0.00000000000000000000000000000000006774 135.0
YYD3_k127_3213159_8 Endonuclease Exonuclease phosphatase K07004 - - 0.000000000000000000000000000000001048 133.0
YYD3_k127_3218478_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1532.0
YYD3_k127_3218478_1 Phosphate acyltransferases K01897 - 6.2.1.3 2.433e-225 726.0
YYD3_k127_3218478_10 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000001514 223.0
YYD3_k127_3218478_11 - - - - 0.0000000000000000000000000000000000000383 147.0
YYD3_k127_3218478_12 Sigma-70 region 2 K03088 - - 0.0000000000000000007096 93.0
YYD3_k127_3218478_13 Pfam:N_methyl_2 - - - 0.0000004342 58.0
YYD3_k127_3218478_2 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 503.0
YYD3_k127_3218478_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599,K01719,K13542 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.107,4.1.1.37,4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004567 460.0
YYD3_k127_3218478_4 protoporphyrinogen oxidase activity K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 460.0
YYD3_k127_3218478_5 competence protein COMEC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 440.0
YYD3_k127_3218478_6 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 424.0
YYD3_k127_3218478_7 ATPase associated with various cellular K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 376.0
YYD3_k127_3218478_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 379.0
YYD3_k127_3218478_9 Spermine/spermidine synthase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 358.0
YYD3_k127_3225483_0 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 518.0
YYD3_k127_3225483_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000961 464.0
YYD3_k127_3225483_2 cAMP biosynthetic process K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003894 484.0
YYD3_k127_3225483_3 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 335.0
YYD3_k127_3225483_4 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003229 293.0
YYD3_k127_3225483_5 amino acid peptide transporter K03305 - - 0.000000000000000000000000000000000000000000000000000000000000000000392 233.0
YYD3_k127_3225483_6 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000000001696 222.0
YYD3_k127_3225483_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000004427 200.0
YYD3_k127_3225483_8 PFAM von Willebrand factor type A K07114,K12511 - - 0.0000000000000000000000005386 118.0
YYD3_k127_3240755_0 PFAM Beta-eliminating lyase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 471.0
YYD3_k127_3240755_2 carbohydrate kinase FGGY K00851 - 2.7.1.12 0.0006817 46.0
YYD3_k127_32477_0 efflux transmembrane transporter activity - - - 4.621e-249 794.0
YYD3_k127_32477_1 efflux transmembrane transporter activity K02004 - - 5.248e-208 672.0
YYD3_k127_32477_2 efflux transmembrane transporter activity K02004 - - 5.42e-201 651.0
YYD3_k127_32477_3 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 595.0
YYD3_k127_32477_4 MacB-like periplasmic core domain - - - 0.000006727 48.0
YYD3_k127_326455_0 aldo keto reductase K05275 - 1.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006732 526.0
YYD3_k127_326455_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007573 448.0
YYD3_k127_326455_2 DinB family - - - 0.0000000000000000000000000000000000000000000000000005472 188.0
YYD3_k127_326455_3 beta-lactamase K17836 - 3.5.2.6 0.0000000000000000000000000000000000000000005903 169.0
YYD3_k127_326455_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000001846 143.0
YYD3_k127_326455_5 Uncharacterized protein conserved in bacteria (DUF2255) - - - 0.000000000003184 72.0
YYD3_k127_326455_6 - - - - 0.000000000003965 72.0
YYD3_k127_326455_7 Cytidine and deoxycytidylate deaminase zinc-binding region - - - 0.0000005099 54.0
YYD3_k127_3270333_0 Carbamoyltransferase C-terminus K00612 - - 3.159e-256 803.0
YYD3_k127_3270333_1 Catalyzes the synthesis of activated sulfate K00958 - 2.7.7.4 5.527e-253 791.0
YYD3_k127_3270333_10 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001515 270.0
YYD3_k127_3270333_11 dTDP-4-dehydrorhamnose 3,5-epimerase activity K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000002838 197.0
YYD3_k127_3270333_12 maltose O-acetyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000001148 194.0
YYD3_k127_3270333_13 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000007375 190.0
YYD3_k127_3270333_14 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000615 149.0
YYD3_k127_3270333_15 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000007309 130.0
YYD3_k127_3270333_16 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000007388 128.0
YYD3_k127_3270333_17 - - - - 0.00000000000002401 73.0
YYD3_k127_3270333_19 Glycosyl transferase - - - 0.0008554 47.0
YYD3_k127_3270333_2 PFAM asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 602.0
YYD3_k127_3270333_3 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 516.0
YYD3_k127_3270333_4 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 494.0
YYD3_k127_3270333_5 Polysaccharide biosynthesis protein K17947 - 5.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 415.0
YYD3_k127_3270333_6 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 387.0
YYD3_k127_3270333_7 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 361.0
YYD3_k127_3270333_8 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008257 288.0
YYD3_k127_3270333_9 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009867 291.0
YYD3_k127_3287110_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 528.0
YYD3_k127_3287110_1 FAD linked oxidases, C-terminal domain K00102,K00104 - 1.1.2.4,1.1.3.15 0.000000000000000000000303 96.0
YYD3_k127_3294135_0 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001249 276.0
YYD3_k127_3306334_0 Carboxypeptidase regulatory-like domain - - - 1.97e-204 682.0
YYD3_k127_3306334_1 N-Acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009406 429.0
YYD3_k127_3306334_2 Leucine-rich repeat (LRR) protein - - - 0.0000000000000000000000000000000000000000000002102 181.0
YYD3_k127_3306334_3 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.00000000000000000000000000000000005256 138.0
YYD3_k127_3306334_4 zinc metalloprotease K11749 - - 0.0000000003117 68.0
YYD3_k127_3306334_5 Tetratricopeptide repeat - - - 0.000006127 58.0
YYD3_k127_3314429_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008208 300.0
YYD3_k127_3314429_1 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000001719 188.0
YYD3_k127_3314429_2 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000007711 127.0
YYD3_k127_3314429_3 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000002026 106.0
YYD3_k127_3314429_4 Serine aminopeptidase, S33 K06889 - - 0.0000000000000001463 86.0
YYD3_k127_3314429_5 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000001974 79.0
YYD3_k127_34208_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 537.0
YYD3_k127_34208_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005213 396.0
YYD3_k127_34208_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004813 391.0
YYD3_k127_34208_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 360.0
YYD3_k127_34208_4 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000001242 232.0
YYD3_k127_34208_5 - - - - 0.00000000000000000000000000000000000000000000000000000000006792 205.0
YYD3_k127_34208_6 - - - - 0.000000000000000000005264 97.0
YYD3_k127_34208_7 GlcNAc-PI de-N-acetylase - - - 0.00000002274 59.0
YYD3_k127_3422614_0 GTP-binding protein TypA K06207 - - 1.025e-256 805.0
YYD3_k127_3422614_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 447.0
YYD3_k127_3422614_10 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.0000000000000000000000000000000000000000000002469 174.0
YYD3_k127_3422614_11 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000005899 173.0
YYD3_k127_3422614_12 HD domain K07023 - - 0.00000000000000000000000000000000002346 141.0
YYD3_k127_3422614_13 - - - - 0.000000000000000000000000000001944 125.0
YYD3_k127_3422614_14 PFAM von Willebrand factor type A K07114 - - 0.00000000000000000000001427 113.0
YYD3_k127_3422614_15 Cyclic nucleotide-monophosphate binding domain K10914 - - 0.0000000000000000000008496 104.0
YYD3_k127_3422614_16 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000977 104.0
YYD3_k127_3422614_17 zinc-ribbon domain - - - 0.00000000000000004368 91.0
YYD3_k127_3422614_18 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000004533 79.0
YYD3_k127_3422614_19 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000001836 81.0
YYD3_k127_3422614_2 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 419.0
YYD3_k127_3422614_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009831 404.0
YYD3_k127_3422614_4 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006329 311.0
YYD3_k127_3422614_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006489 267.0
YYD3_k127_3422614_6 COG1230 Co Zn Cd efflux system component K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004004 264.0
YYD3_k127_3422614_7 response regulator receiver K03413 - - 0.0000000000000000000000000000000000000000000000000000000008168 213.0
YYD3_k127_3422614_8 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000001006 188.0
YYD3_k127_3422614_9 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000005247 180.0
YYD3_k127_344196_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 416.0
YYD3_k127_3454232_0 PFAM Type II secretion system protein E K02652 - - 2.147e-220 696.0
YYD3_k127_3454232_1 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004111 264.0
YYD3_k127_3454232_2 Belongs to the GSP D family K02453 - - 0.000000000000000000000000000000000000000001998 179.0
YYD3_k127_3456123_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1158.0
YYD3_k127_3456123_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 7.669e-267 841.0
YYD3_k127_3456123_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K00256 - 1.3.99.16 5.214e-253 801.0
YYD3_k127_3456123_3 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 361.0
YYD3_k127_3456123_4 [2Fe-2S] binding domain - - - 0.00000000000000000000000000000000000000000000000000000000001071 210.0
YYD3_k127_3456123_5 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000026 142.0
YYD3_k127_3456123_6 Redoxin - - - 0.00004461 47.0
YYD3_k127_3462524_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 GO:0000041,GO:0003674,GO:0005215,GO:0005375,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006873,GO:0006875,GO:0006878,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010272,GO:0010273,GO:0015075,GO:0015080,GO:0015318,GO:0015673,GO:0015679,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0034220,GO:0035434,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0044425,GO:0044464,GO:0046688,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060003,GO:0061687,GO:0065007,GO:0065008,GO:0071944,GO:0097501,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:1902601,GO:1990169 - 2.334e-225 716.0
YYD3_k127_3462524_1 lactoylglutathione lyase activity K11210,K21253,K21264,K21265 GO:0003674,GO:0003824,GO:0004364,GO:0008150,GO:0016740,GO:0016765,GO:0042221,GO:0046677,GO:0050896 2.5.1.18 0.000000000000000000000000000000000000000000000000699 179.0
YYD3_k127_3462524_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.000000000000000000000000000000000000000000001393 181.0
YYD3_k127_3462524_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000004667 152.0
YYD3_k127_3462524_4 Outer membrane efflux protein K15725 - - 0.00000000000000000000002523 114.0
YYD3_k127_3462524_5 AntiSigma factor - - - 0.00000000000000002777 93.0
YYD3_k127_3462524_6 DoxX-like family - - - 0.00000000009775 63.0
YYD3_k127_3482203_0 Peptidase M14, carboxypeptidase A - - - 0.0 1380.0
YYD3_k127_3482203_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1076.0
YYD3_k127_3482203_10 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 383.0
YYD3_k127_3482203_11 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 319.0
YYD3_k127_3482203_12 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006956 285.0
YYD3_k127_3482203_13 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003541 285.0
YYD3_k127_3482203_14 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009576 239.0
YYD3_k127_3482203_15 GAF domain K08968 - 1.8.4.14 0.000000000000000000000000000000000000000000000000000000007215 204.0
YYD3_k127_3482203_16 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000000000000000000007623 193.0
YYD3_k127_3482203_17 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000002747 160.0
YYD3_k127_3482203_18 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000001829 131.0
YYD3_k127_3482203_19 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000003745 110.0
YYD3_k127_3482203_2 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 4.331e-261 820.0
YYD3_k127_3482203_20 Lipopolysaccharide-assembly - - - 0.000000000000003539 82.0
YYD3_k127_3482203_21 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000000003925 78.0
YYD3_k127_3482203_22 Cell wall-associated hydrolase (invasion-associated protein) - - - 0.0000000000003854 78.0
YYD3_k127_3482203_23 - - - - 0.00000000002268 68.0
YYD3_k127_3482203_25 - - - - 0.0001879 47.0
YYD3_k127_3482203_3 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 514.0
YYD3_k127_3482203_4 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005242 400.0
YYD3_k127_3482203_5 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006452 400.0
YYD3_k127_3482203_6 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007141 394.0
YYD3_k127_3482203_7 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 379.0
YYD3_k127_3482203_8 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 354.0
YYD3_k127_3482203_9 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008241 353.0
YYD3_k127_3485378_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 593.0
YYD3_k127_3485378_1 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007348 400.0
YYD3_k127_3485378_2 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004115 370.0
YYD3_k127_3485378_3 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 310.0
YYD3_k127_3485378_4 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002123 285.0
YYD3_k127_3485378_5 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000001324 245.0
YYD3_k127_3485378_6 metalloendopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000194 206.0
YYD3_k127_3485378_7 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000000009619 112.0
YYD3_k127_3485378_8 SurA N-terminal domain K03769,K07533 - 5.2.1.8 0.0000000000000000000000836 111.0
YYD3_k127_3485378_9 snoRNA binding - - - 0.0000000002642 66.0
YYD3_k127_3502733_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - 2.893e-291 912.0
YYD3_k127_3502733_1 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 465.0
YYD3_k127_3502733_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004202 290.0
YYD3_k127_3502733_3 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000002806 221.0
YYD3_k127_3502733_4 SnoaL-like domain K06893 - - 0.0000000000000000000000000000000000000000000000004773 179.0
YYD3_k127_3502733_5 - - - - 0.00000000000000000000000000000000000000008806 154.0
YYD3_k127_3510866_0 - - - - 0.0 1049.0
YYD3_k127_3510866_1 alpha-L-arabinofuranosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005838 465.0
YYD3_k127_3510866_2 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 407.0
YYD3_k127_3510866_3 ATPase activity K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000004289 244.0
YYD3_k127_3510866_4 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.0000000000000000000000000000000009356 154.0
YYD3_k127_3510866_5 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000007198 138.0
YYD3_k127_3510866_6 Belongs to the anti-sigma-factor antagonist family - - - 0.00006198 49.0
YYD3_k127_3514242_0 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005736 299.0
YYD3_k127_3514242_1 Cell division protein ZipA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004551 243.0
YYD3_k127_3514242_2 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001565 248.0
YYD3_k127_3514242_3 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000006331 185.0
YYD3_k127_351556_0 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006457 443.0
YYD3_k127_3519799_0 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 414.0
YYD3_k127_3519799_1 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000001306 210.0
YYD3_k127_3519799_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000003222 78.0
YYD3_k127_3522423_0 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005886 344.0
YYD3_k127_3522423_1 - K07004 - - 0.0000000000000002169 89.0
YYD3_k127_3522423_2 Protein of unknown function (DUF2847) - - - 0.000000000000005737 79.0
YYD3_k127_3522423_3 Domain of unknown function (DUF4384) - - - 0.00000005882 61.0
YYD3_k127_3531324_0 Transcriptional regulator K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 362.0
YYD3_k127_3531324_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 333.0
YYD3_k127_3532835_0 Amidohydrolase - - - 0.00000000000000000000000000000000000000000002807 178.0
YYD3_k127_3532835_1 Major Facilitator - - - 0.00000000000000000000000004275 110.0
YYD3_k127_3532835_2 Methyltransferase domain - - - 0.000001196 59.0
YYD3_k127_353778_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 409.0
YYD3_k127_353778_1 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000000000000000006939 141.0
YYD3_k127_353778_2 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000000000000009567 136.0
YYD3_k127_353778_3 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.0000000000000000000000000002129 119.0
YYD3_k127_353778_4 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.0000000000000000000002722 103.0
YYD3_k127_353778_5 phosphorelay signal transduction system K11443 - - 0.000000000000000000005705 98.0
YYD3_k127_353778_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000006804 55.0
YYD3_k127_353778_7 Tetratricopeptide repeat - - - 0.00000263 59.0
YYD3_k127_3540330_0 phosphoesterase, PA-phosphatase related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 526.0
YYD3_k127_3540330_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005721 486.0
YYD3_k127_3540330_10 Pilus assembly protein PilX K02673 - - 0.00000000000004478 81.0
YYD3_k127_3540330_11 Cytochrome b(C-terminal)/b6/petD K00412 - - 0.0000000000008216 73.0
YYD3_k127_3540330_2 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 368.0
YYD3_k127_3540330_3 Chlorite dismutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001922 279.0
YYD3_k127_3540330_4 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000006785 244.0
YYD3_k127_3540330_5 Membrane - - - 0.0000000000000000000000000000000000000000000000000003551 208.0
YYD3_k127_3540330_6 - - - - 0.00000000000000000000000000000000000003356 160.0
YYD3_k127_3540330_7 Rieske [2Fe-2S] domain K03886 - - 0.000000000000000000000000003609 117.0
YYD3_k127_3540330_9 domain protein - - - 0.0000000000000000161 82.0
YYD3_k127_356091_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 3.315e-222 700.0
YYD3_k127_356091_1 Belongs to the ClpA ClpB family K03696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004985 475.0
YYD3_k127_356091_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.0000000000000000006702 92.0
YYD3_k127_3567521_0 - - - - 0.0000000000000000000000000000000000000301 160.0
YYD3_k127_3567521_1 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.00000000000000000000000000000000003741 143.0
YYD3_k127_3567521_2 - - - - 0.000000000000000000000001511 109.0
YYD3_k127_3569575_0 ASPIC and UnbV - - - 1.372e-209 668.0
YYD3_k127_3569575_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009359 490.0
YYD3_k127_3569575_2 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 310.0
YYD3_k127_3569575_3 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 282.0
YYD3_k127_3569575_4 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000111 236.0
YYD3_k127_3569575_5 - - - - 0.0000000000000000000000000000002385 128.0
YYD3_k127_3577710_0 Zinc-binding dehydrogenase K00008,K00148,K18369 - 1.1.1.14,1.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 583.0
YYD3_k127_3577710_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 376.0
YYD3_k127_3577710_2 Universal stress protein family - - - 0.0000000000000000000000000000000007309 144.0
YYD3_k127_3577710_3 AMP binding K06149 - - 0.0000000000000006703 89.0
YYD3_k127_3577710_4 Belongs to the universal stress protein A family - - - 0.0008963 51.0
YYD3_k127_3582188_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1084.0
YYD3_k127_3582188_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007098 501.0
YYD3_k127_3582188_10 metallopeptidase activity - - - 0.0000000000000000000000000000004389 132.0
YYD3_k127_3582188_11 Penicillinase repressor - - - 0.000000000000000000003413 98.0
YYD3_k127_3582188_12 cAMP biosynthetic process - - - 0.00000000000000000003218 94.0
YYD3_k127_3582188_13 Belongs to the peptidase M48B family - - - 0.0008517 51.0
YYD3_k127_3582188_2 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 391.0
YYD3_k127_3582188_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 333.0
YYD3_k127_3582188_4 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002701 280.0
YYD3_k127_3582188_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000001252 191.0
YYD3_k127_3582188_6 - - - - 0.000000000000000000000000000000000000000067 161.0
YYD3_k127_3582188_7 TonB dependent receptor K16087 - - 0.000000000000000000000000000000000000001423 170.0
YYD3_k127_3582188_8 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000005617 138.0
YYD3_k127_3582188_9 Yqey-like protein K09117 - - 0.0000000000000000000000000000001655 128.0
YYD3_k127_3631829_0 Pectate lyase superfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 499.0
YYD3_k127_3631829_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009521 344.0
YYD3_k127_3631829_2 ABC transporter transmembrane region K06147 - - 0.0000000000000000000001261 97.0
YYD3_k127_3631829_3 - - - - 0.0000001424 58.0
YYD3_k127_3671825_0 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004476 259.0
YYD3_k127_3671825_1 - - - - 0.000000000000005087 83.0
YYD3_k127_3694949_0 Pkd domain containing protein K07407 - 3.2.1.22 1.005e-221 702.0
YYD3_k127_3694949_1 PFAM glycoside hydrolase, family 29 K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 613.0
YYD3_k127_3694949_10 Amidohydrolase K07046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003293 284.0
YYD3_k127_3694949_11 Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source K18928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001972 273.0
YYD3_k127_3694949_12 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008641 271.0
YYD3_k127_3694949_13 Beta-galactosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000007006 250.0
YYD3_k127_3694949_14 PFAM Uncharacterised ACR, YkgG family COG1556 K00782 - - 0.0000000000000000000008018 104.0
YYD3_k127_3694949_15 Alpha galactosidase A K07407 - 3.2.1.22 0.000000000000000001415 101.0
YYD3_k127_3694949_2 PFAM Alcohol dehydrogenase GroES-like domain K00008,K00060 - 1.1.1.103,1.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007135 483.0
YYD3_k127_3694949_3 cluster binding protein K18929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005233 459.0
YYD3_k127_3694949_4 Periplasmic binding proteins and sugar binding domain of LacI family K10439,K10552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009761 442.0
YYD3_k127_3694949_5 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007209 451.0
YYD3_k127_3694949_6 Branched-chain amino acid transport system / permease component K10440,K10553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 429.0
YYD3_k127_3694949_7 Alginate lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 345.0
YYD3_k127_3694949_8 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01707 - 4.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 318.0
YYD3_k127_3694949_9 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005743 292.0
YYD3_k127_3696200_0 Protein of unknown function (DUF763) K09003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 601.0
YYD3_k127_3696200_1 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 489.0
YYD3_k127_3696200_10 transporter, permease K02033,K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 320.0
YYD3_k127_3696200_11 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000256 269.0
YYD3_k127_3696200_12 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008924 264.0
YYD3_k127_3696200_13 Methyltransferase domain K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000000000000000000003505 211.0
YYD3_k127_3696200_14 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000001799 208.0
YYD3_k127_3696200_15 Stress-induced protein - - - 0.000000000000000000000000000000000000000000000000000000003997 211.0
YYD3_k127_3696200_16 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000001168 200.0
YYD3_k127_3696200_17 response regulator receiver K02483,K07658 - - 0.000000000000000000000000000000000000000000000000000004963 199.0
YYD3_k127_3696200_18 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000006489 191.0
YYD3_k127_3696200_19 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000000000001867 199.0
YYD3_k127_3696200_2 ABC transporter K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 473.0
YYD3_k127_3696200_20 DinB family - - - 0.0000000000000000000000000000000000000000000000002069 181.0
YYD3_k127_3696200_21 Cupin domain - - - 0.0000000000000000000000000000000000000000000000007833 177.0
YYD3_k127_3696200_22 HD domain - - - 0.000000000000000000000000000000000000000000000004138 188.0
YYD3_k127_3696200_23 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000001093 183.0
YYD3_k127_3696200_24 Cell division protein FtsI penicillin-binding protein K05364 - - 0.00000000000000000000000000000000000000003341 172.0
YYD3_k127_3696200_25 chlorophyll binding - - - 0.00000000000000000000000000000000000000005878 170.0
YYD3_k127_3696200_26 methyltransferase K18846 - 2.1.1.180 0.00000000000000000000000000000000000002613 151.0
YYD3_k127_3696200_27 Protein tyrosine kinase K08884,K12132 GO:0002237,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009847,GO:0009987,GO:0010033,GO:0010243,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0032494,GO:0032502,GO:0036211,GO:0042221,GO:0042834,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071224,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0071944,GO:0097367,GO:0140096,GO:1901564,GO:1901698,GO:1901699,GO:1901700,GO:1901701 2.7.11.1 0.000000000000000000000000000000000009184 154.0
YYD3_k127_3696200_28 Belongs to the SEDS family K03588 GO:0002682,GO:0002684,GO:0008150,GO:0009605,GO:0009607,GO:0009987,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051301,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0075136 - 0.00000000000000000000000000000000002134 153.0
YYD3_k127_3696200_29 sigma factor antagonist activity K04757 - 2.7.11.1 0.000000000003765 80.0
YYD3_k127_3696200_3 ATPases associated with a variety of cellular activities K10823,K10824 - 3.6.3.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 456.0
YYD3_k127_3696200_30 FHA domain - - - 0.0000000001683 71.0
YYD3_k127_3696200_31 antisigma factor binding - - - 0.0000000265 61.0
YYD3_k127_3696200_32 Protein of unknown function (DUF2662) - - - 0.0000006627 60.0
YYD3_k127_3696200_33 - - - - 0.000007813 55.0
YYD3_k127_3696200_34 DNA-directed 5'-3' RNA polymerase activity K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.00001949 49.0
YYD3_k127_3696200_4 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 442.0
YYD3_k127_3696200_5 Belongs to the ABC transporter superfamily K15583 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009139 423.0
YYD3_k127_3696200_6 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 391.0
YYD3_k127_3696200_7 'ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 350.0
YYD3_k127_3696200_8 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 340.0
YYD3_k127_3696200_9 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 319.0
YYD3_k127_3711383_0 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000007857 224.0
YYD3_k127_3711383_1 Participates in transcription elongation, termination and antitermination - - - 0.000000000000000000000000000000000000000000000000000000001571 215.0
YYD3_k127_3711383_2 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000002737 151.0
YYD3_k127_3711383_3 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000212 123.0
YYD3_k127_3711383_4 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000289 118.0
YYD3_k127_3711383_5 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000008038 112.0
YYD3_k127_3711383_6 Pilus assembly protein K02662 - - 0.00001032 57.0
YYD3_k127_3711383_7 Putative zinc-finger - - - 0.0006075 50.0
YYD3_k127_374790_0 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 377.0
YYD3_k127_374790_1 Cytochrome c7 and related cytochrome c - - - 0.00000002091 65.0
YYD3_k127_374790_2 heat shock protein binding - - - 0.00000007353 64.0
YYD3_k127_374790_3 Decaheme c-type cytochrome, DmsE family - - - 0.000007085 58.0
YYD3_k127_374790_4 Class III cytochrome C family - - - 0.0001447 52.0
YYD3_k127_374790_5 FHA domain - - - 0.0002029 53.0
YYD3_k127_3752908_0 RmlD substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 438.0
YYD3_k127_3752908_1 PFAM Glycosyl transferase family 2 K10012 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 372.0
YYD3_k127_3752908_2 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 304.0
YYD3_k127_3758752_0 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 567.0
YYD3_k127_3758752_1 DNA-directed DNA polymerase activity K02347,K03581,K04477 - 3.1.11.5 0.0000000000000000000000000000004061 125.0
YYD3_k127_3758752_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000001931 130.0
YYD3_k127_3758752_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07671 GO:0000287,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0043167,GO:0043169,GO:0044110,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0051704,GO:0071944 - 0.00000000000000001139 87.0
YYD3_k127_3758752_6 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000005728 68.0
YYD3_k127_3758752_7 protein conserved in bacteria K09778 - - 0.0000000002586 71.0
YYD3_k127_3759877_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 499.0
YYD3_k127_3759877_1 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 489.0
YYD3_k127_3759877_2 Transmembrane secretion effector K08225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007234 371.0
YYD3_k127_3759877_3 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008781 303.0
YYD3_k127_3759877_4 Sugar (and other) transporter - - - 0.0000000000000000000000000000000001851 133.0
YYD3_k127_3759877_5 SMART Transport-associated and nodulation region K04065 - - 0.00002097 54.0
YYD3_k127_3777885_0 Protein of unknown function, DUF255 K06888 - - 8.74e-238 752.0
YYD3_k127_3777885_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008472 579.0
YYD3_k127_3777885_10 4Fe-4S binding domain K00395,K02572,K03616 - 1.8.99.2 0.000000000000000000000000000000000000000000000000005612 183.0
YYD3_k127_3777885_12 Protein of unknown function (DUF420) K08976 - - 0.00000000000000000000000000000000000007198 146.0
YYD3_k127_3777885_13 PFAM cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000003432 144.0
YYD3_k127_3777885_14 spore germination - - - 0.00000000000000000000000000000000007792 145.0
YYD3_k127_3777885_15 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.0000000000000000000000000009232 113.0
YYD3_k127_3777885_16 PFAM cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.00000000000000000000000000137 121.0
YYD3_k127_3777885_2 metallocarboxypeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 561.0
YYD3_k127_3777885_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 424.0
YYD3_k127_3777885_4 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 413.0
YYD3_k127_3777885_5 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053 426.0
YYD3_k127_3777885_6 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 386.0
YYD3_k127_3777885_7 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 336.0
YYD3_k127_3777885_8 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000004903 226.0
YYD3_k127_3777885_9 deoxyhypusine monooxygenase activity K00627,K02160,K07402 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000001426 201.0
YYD3_k127_3796753_0 Dienelactone hydrolase family - - - 3.855e-312 971.0
YYD3_k127_3796753_1 Na dependent nucleoside transporter K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008968 352.0
YYD3_k127_3796753_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 334.0
YYD3_k127_3796753_3 TIGRFAM thioredoxin K03672 - 1.8.1.8 0.0000000000000000000000000000000000000000004637 162.0
YYD3_k127_3796753_4 DinB family - - - 0.000000000000000000001212 101.0
YYD3_k127_3799147_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 380.0
YYD3_k127_3799147_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004985 302.0
YYD3_k127_3799147_2 ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003083 278.0
YYD3_k127_3799147_3 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000006437 226.0
YYD3_k127_3799147_4 helix_turn_helix, arabinose operon control protein K07506 - - 0.00000000000000000000000000000000000000000000000000002932 199.0
YYD3_k127_3799147_5 YjbR - - - 0.00000000000000000000000000000000000000000003933 164.0
YYD3_k127_3799147_6 transcriptional regulator - - - 0.0000000000000000000000000000000000000000002085 167.0
YYD3_k127_3799147_7 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000000000000001276 140.0
YYD3_k127_3799147_8 Hexapeptide repeat of succinyl-transferase - - - 0.000000001687 67.0
YYD3_k127_3799147_9 Tetratricopeptide repeat - - - 0.0009359 48.0
YYD3_k127_3822075_0 Vault protein inter-alpha-trypsin domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 495.0
YYD3_k127_3822075_1 Vault protein inter-alpha-trypsin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 473.0
YYD3_k127_3822075_2 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 313.0
YYD3_k127_3822075_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000003953 219.0
YYD3_k127_3822075_4 Photosynthesis system II assembly factor YCF48 - - - 0.0000000000000000000000000000000000000000000000000169 192.0
YYD3_k127_3822075_5 Transmembrane exosortase (Exosortase_EpsH) - - - 0.000000000000000000000000000000000000000000002136 175.0
YYD3_k127_3822075_6 - - - - 0.00000000000000000000000000000000000000000003051 167.0
YYD3_k127_3822075_7 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.000000000000000000000000000000000003007 148.0
YYD3_k127_3822075_8 Protein of unknown function (DUF962) - - - 0.00000000000000000000000000000000001227 137.0
YYD3_k127_3822075_9 Xanthine and CO dehydrogenases maturation factor XdhC CoxF K07402 - - 0.00000000000000000000002166 103.0
YYD3_k127_3822805_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0 1289.0
YYD3_k127_3822805_1 peroxiredoxin activity - - - 1.527e-296 918.0
YYD3_k127_3822805_2 ASPIC and UnbV - - - 4.795e-235 745.0
YYD3_k127_3822805_3 transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 393.0
YYD3_k127_3822805_4 electron transport chain K00347,K03614,K21163 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 351.0
YYD3_k127_3822805_5 ROK family - - - 0.00000000000000000000000000000000000000000000000000000000001082 222.0
YYD3_k127_3843665_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007591 589.0
YYD3_k127_3843665_1 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007048 417.0
YYD3_k127_3843665_2 - - - - 0.0000000001281 72.0
YYD3_k127_3843665_3 TIGRFAM TonB K03832 - - 0.0000003559 58.0
YYD3_k127_3845064_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 428.0
YYD3_k127_3878978_0 Actin K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005979 259.0
YYD3_k127_3878978_1 Cation efflux family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002347 249.0
YYD3_k127_3878978_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.0000000000000000000000000000000000000000000000000000000002073 213.0
YYD3_k127_3878978_3 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000001655 214.0
YYD3_k127_3878978_4 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 - 6.5.1.4 0.00000000000000000000000000002235 119.0
YYD3_k127_3887277_0 ABC-type transport system involved in lipoprotein release permease component K02004 - - 1.075e-282 888.0
YYD3_k127_3887277_1 PEP-utilising enzyme, mobile domain - - - 4.485e-250 782.0
YYD3_k127_3887277_11 Family of unknown function (DUF5335) - - - 0.00000004244 61.0
YYD3_k127_3887277_2 Erythromycin esterase - - - 1.422e-196 621.0
YYD3_k127_3887277_3 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 635.0
YYD3_k127_3887277_4 Zinc-binding alcohol dehydrogenase family protein K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005649 404.0
YYD3_k127_3887277_5 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 357.0
YYD3_k127_3887277_6 Rnd family efflux transporter mfp subunit K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 321.0
YYD3_k127_3887277_7 PFAM Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001423 262.0
YYD3_k127_3887277_8 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 0.00000000000000000000000000000000000000000000000003481 194.0
YYD3_k127_3887277_9 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000000000000000000000000000000000008752 160.0
YYD3_k127_3925193_0 BtpA family K06971 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005576 286.0
YYD3_k127_3925193_1 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009821 250.0
YYD3_k127_3925193_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000004056 216.0
YYD3_k127_3925193_3 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000000000000000000000000007861 181.0
YYD3_k127_3925193_4 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000001218 130.0
YYD3_k127_3925193_5 nucleotidyltransferase K07074 - - 0.00000000000000000000000000001822 131.0
YYD3_k127_3925193_6 Belongs to the proline racemase family K12658 GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855,GO:0036361,GO:0047580,GO:0047661 5.1.1.8 0.00000000000000000000001231 108.0
YYD3_k127_3925193_7 Protein of unknown function (DUF3455) - - - 0.000000000000000002162 93.0
YYD3_k127_3926612_0 Oxidoreductase NAD-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 372.0
YYD3_k127_3926612_1 eRF1 domain 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 365.0
YYD3_k127_3926612_2 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000000000001998 205.0
YYD3_k127_3926612_3 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000007245 179.0
YYD3_k127_3926612_4 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000006036 158.0
YYD3_k127_3926612_5 - - - - 0.00000000000000000000000000000000000006129 148.0
YYD3_k127_3926612_6 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000002019 122.0
YYD3_k127_3926612_7 Protein of unknown function, DUF488 - - - 0.000006437 49.0
YYD3_k127_3947474_0 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007941 536.0
YYD3_k127_3947474_1 BAAT / Acyl-CoA thioester hydrolase C terminal - - - 0.0000000000000000000000000000000000008049 158.0
YYD3_k127_395512_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1109.0
YYD3_k127_395512_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 6.998e-224 705.0
YYD3_k127_395512_10 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000005776 220.0
YYD3_k127_395512_11 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000004681 166.0
YYD3_k127_395512_12 Tricorn protease C1 domain K03797 - 3.4.21.102 0.000000000000000000000000000000000003365 153.0
YYD3_k127_395512_13 Hsp20/alpha crystallin family K13993 - - 0.00000000000000000000000003505 114.0
YYD3_k127_395512_14 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000006394 100.0
YYD3_k127_395512_15 repeat-containing protein - - - 0.000003583 59.0
YYD3_k127_395512_16 Periplasmic protein TonB links inner and outer membranes - - - 0.000004942 58.0
YYD3_k127_395512_17 - - - - 0.0009448 50.0
YYD3_k127_395512_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007748 488.0
YYD3_k127_395512_3 C-terminal, D2-small domain, of ClpB protein K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007313 481.0
YYD3_k127_395512_4 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 450.0
YYD3_k127_395512_5 MgtE intracellular N domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 421.0
YYD3_k127_395512_6 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000486 369.0
YYD3_k127_395512_7 with different specificities (related to short-chain alcohol K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 287.0
YYD3_k127_395512_8 COG1078 HD superfamily phosphohydrolases K06885 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 297.0
YYD3_k127_395512_9 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 GO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000004398 234.0
YYD3_k127_3964690_0 Dienelactone hydrolase family - - - 0.0 1141.0
YYD3_k127_3964690_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007794 424.0
YYD3_k127_3964690_10 PBS lyase HEAT-like repeat - - - 0.0000001339 64.0
YYD3_k127_3964690_2 amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004102 283.0
YYD3_k127_3964690_3 Parallel beta-helix repeats K12287 - - 0.0000000000000000000000000000000000000000000000000000001008 224.0
YYD3_k127_3964690_4 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000006662 193.0
YYD3_k127_3964690_5 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000001849 169.0
YYD3_k127_3964690_6 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000003396 143.0
YYD3_k127_3964690_7 aminopeptidase K01262 - 3.4.11.9 0.000000000000000000000001575 119.0
YYD3_k127_3964690_8 - - - - 0.000000000000002676 83.0
YYD3_k127_3964690_9 cellulase activity - - - 0.00000000000006959 85.0
YYD3_k127_3969757_0 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005335 511.0
YYD3_k127_3969757_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 325.0
YYD3_k127_3969757_2 O-Antigen ligase K02847 - - 0.000000000000000000000000000000000000000003825 173.0
YYD3_k127_3969757_3 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000001597 98.0
YYD3_k127_3969757_4 Cytochrome c554 and c-prime - - - 0.0000142 57.0
YYD3_k127_3972181_0 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006685 543.0
YYD3_k127_3972181_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 505.0
YYD3_k127_3972181_10 Sensory domain in DIguanylate Cyclases and Two-component system - - - 0.0000000000000000001663 96.0
YYD3_k127_3972181_11 Glycosyl transferase, family 2 K16555 - - 0.00003328 55.0
YYD3_k127_3972181_2 Mur ligase middle domain K02558 - 6.3.2.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 471.0
YYD3_k127_3972181_3 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 398.0
YYD3_k127_3972181_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 325.0
YYD3_k127_3972181_5 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001996 274.0
YYD3_k127_3972181_6 - - - - 0.0000000000000000000000000000000000000000000000000000002704 196.0
YYD3_k127_3972181_7 Phosphate acetyl/butaryl transferase K00625 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.8 0.0000000000000000000000000000000000001531 147.0
YYD3_k127_3972181_8 Nodulation protein S (NodS) - - - 0.000000000000000000000000000000000001455 149.0
YYD3_k127_3972181_9 Protein of unknown function (DUF1232) - - - 0.000000000000000000000005916 110.0
YYD3_k127_3975171_0 Tricorn protease homolog K08676 - - 0.0 1497.0
YYD3_k127_3975171_1 Aconitase C-terminal domain K01703 - 4.2.1.33,4.2.1.35 5.023e-282 882.0
YYD3_k127_3975171_10 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000001833 199.0
YYD3_k127_3975171_11 PFAM NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000009059 192.0
YYD3_k127_3975171_12 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000008514 185.0
YYD3_k127_3975171_13 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000002487 179.0
YYD3_k127_3975171_14 Belongs to the acetyltransferase family. ArgA subfamily - - - 0.0000000000000000000000000000000000000000000001377 172.0
YYD3_k127_3975171_15 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000005179 169.0
YYD3_k127_3975171_16 DinB family - - - 0.0000000000000000000000000000000000000000000006574 171.0
YYD3_k127_3975171_17 2OG-Fe(II) oxygenase superfamily K07336,K07394 - - 0.000000000000000000000000000000000000000000002511 171.0
YYD3_k127_3975171_18 Protein of unknown function (DUF2911) - - - 0.00000000000000000000000000000000000000000002755 173.0
YYD3_k127_3975171_19 PFAM MgtC SapB transporter K07507 - - 0.00000000000000000000000000000000000000000009073 164.0
YYD3_k127_3975171_2 Amidohydrolase family - - - 1.57e-219 688.0
YYD3_k127_3975171_20 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000000000000003345 139.0
YYD3_k127_3975171_21 - - - - 0.0000000000000000000000000000000001519 137.0
YYD3_k127_3975171_22 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000003996 139.0
YYD3_k127_3975171_23 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000001636 132.0
YYD3_k127_3975171_24 deoxyhypusine monooxygenase activity K05385 - - 0.000000000000000000000001095 117.0
YYD3_k127_3975171_25 HEAT repeats - - - 0.000000000000000000000007956 116.0
YYD3_k127_3975171_26 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.0000000000000000000006487 98.0
YYD3_k127_3975171_27 HEAT repeats - - - 0.000000000000000000001849 109.0
YYD3_k127_3975171_28 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000002643 80.0
YYD3_k127_3975171_29 - K01611 - 4.1.1.50 0.000000007754 62.0
YYD3_k127_3975171_3 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 614.0
YYD3_k127_3975171_30 Polymer-forming cytoskeletal - - - 0.00000004023 61.0
YYD3_k127_3975171_31 Membrane protein implicated in regulation of membrane protease activity - - - 0.0000001361 61.0
YYD3_k127_3975171_32 Putative zinc-finger - - - 0.000105 54.0
YYD3_k127_3975171_33 PBS lyase HEAT-like repeat - - - 0.0001499 54.0
YYD3_k127_3975171_35 Bacterial regulatory protein, Fis family K02584 - - 0.0005146 47.0
YYD3_k127_3975171_4 Peptidase dimerisation domain K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 490.0
YYD3_k127_3975171_5 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 451.0
YYD3_k127_3975171_6 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 426.0
YYD3_k127_3975171_7 Flotillin K07192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 398.0
YYD3_k127_3975171_8 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 297.0
YYD3_k127_3975171_9 amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000007492 258.0
YYD3_k127_3988495_0 Winged helix DNA-binding domain K09927 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 499.0
YYD3_k127_3988495_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 481.0
YYD3_k127_3988495_2 Endonuclease Exonuclease Phosphatase - - - 0.000000000000000000000000000000000000000003625 166.0
YYD3_k127_399764_0 Dipeptidyl peptidase IV (DPP IV) K01278 - 3.4.14.5 1.491e-293 919.0
YYD3_k127_399764_1 acyl-CoA dehydrogenase activity K09456 - - 2.255e-227 718.0
YYD3_k127_399764_10 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000006406 209.0
YYD3_k127_399764_11 BON domain - - - 0.0000000000000000000000000000000000000000003112 164.0
YYD3_k127_399764_12 acetylesterase activity - - - 0.000000000000000000000000000000001097 145.0
YYD3_k127_399764_13 Acetyl xylan esterase (AXE1) - - - 0.00000000000000000000000000000001275 128.0
YYD3_k127_399764_14 Tetratricopeptide repeat - - - 0.000000000000000000000000001638 115.0
YYD3_k127_399764_15 beta-propeller repeat - - - 0.00000000000000000000671 101.0
YYD3_k127_399764_16 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000001188 88.0
YYD3_k127_399764_18 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000003448 89.0
YYD3_k127_399764_19 Ankyrin repeat K06867 - - 0.000000000001268 79.0
YYD3_k127_399764_2 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 2.491e-200 637.0
YYD3_k127_399764_20 O-antigen ligase like membrane protein - - - 0.0000000001122 74.0
YYD3_k127_399764_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 516.0
YYD3_k127_399764_4 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 497.0
YYD3_k127_399764_5 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005934 489.0
YYD3_k127_399764_6 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 478.0
YYD3_k127_399764_7 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 400.0
YYD3_k127_399764_8 Putative cyclase K07130 GO:0003674,GO:0003824,GO:0004061,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 325.0
YYD3_k127_399764_9 6-phosphogluconolactonase K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000277 267.0
YYD3_k127_4001363_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005048 589.0
YYD3_k127_4001363_1 ATPase activity K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 381.0
YYD3_k127_4001363_2 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009986 351.0
YYD3_k127_4001363_3 NifU-like N terminal domain K04488 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0030003,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0097428,GO:0098771,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000001149 198.0
YYD3_k127_4001363_4 C-terminal domain of CHU protein family - - - 0.0000000000003874 78.0
YYD3_k127_4005543_0 Sigma factor PP2C-like phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001752 286.0
YYD3_k127_4005543_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003204 274.0
YYD3_k127_4005543_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000001558 229.0
YYD3_k127_4005543_3 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000000000000000000000000000005208 203.0
YYD3_k127_4005543_5 cAMP biosynthetic process - - - 0.00000000000000000000000000006405 125.0
YYD3_k127_4005543_6 Domain of unknown function (DUF1736) - GO:0001763,GO:0002009,GO:0003401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009887,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010604,GO:0012505,GO:0019222,GO:0030154,GO:0030162,GO:0030323,GO:0030324,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0040007,GO:0042176,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048286,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048729,GO:0048731,GO:0048747,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0055001,GO:0055002,GO:0060255,GO:0060425,GO:0060429,GO:0060441,GO:0060447,GO:0060541,GO:0060560,GO:0060562,GO:0060602,GO:0061061,GO:0061136,GO:0061138,GO:0065007,GO:0080090,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364 - 0.00000000000000001814 96.0
YYD3_k127_4005543_7 PQQ enzyme repeat - - - 0.00000000000003794 74.0
YYD3_k127_4005543_9 Cysteine-rich CWC - - - 0.00004286 49.0
YYD3_k127_401999_0 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 0.0 1287.0
YYD3_k127_401999_1 MatE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464 604.0
YYD3_k127_401999_10 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001557 269.0
YYD3_k127_401999_11 enzyme related to lactoylglutathione lyase K06996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000596 273.0
YYD3_k127_401999_12 phosphoserine phosphatase activity K07315,K16928 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000004799 215.0
YYD3_k127_401999_13 protein conserved in bacteria K04750 - - 0.0000000000000000000000000000000000000000000000000000000003759 205.0
YYD3_k127_401999_14 EamA-like transporter family K07790 - - 0.00000000000000000000000000000000000000000000000000006871 199.0
YYD3_k127_401999_15 recA bacterial DNA recombination protein - - - 0.00000000000000000000000000000000000000000000000003317 188.0
YYD3_k127_401999_16 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000192 181.0
YYD3_k127_401999_17 Mannose-6-phosphate isomerase - - - 0.00000000000000000000000000000000000000003228 154.0
YYD3_k127_401999_18 protein phosphatase 2C domain protein - - - 0.000000000000000000000000211 123.0
YYD3_k127_401999_19 phosphorelay signal transduction system - - - 0.00000000000002741 79.0
YYD3_k127_401999_2 Bacterial regulatory protein, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 554.0
YYD3_k127_401999_20 PEP-CTERM motif - - - 0.00000359 57.0
YYD3_k127_401999_21 PFAM PEP-CTERM motif - - - 0.000005687 57.0
YYD3_k127_401999_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 518.0
YYD3_k127_401999_4 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 477.0
YYD3_k127_401999_5 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009023 349.0
YYD3_k127_401999_6 PAS domain containing protein K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 329.0
YYD3_k127_401999_7 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008435 315.0
YYD3_k127_401999_8 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000395 285.0
YYD3_k127_401999_9 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007271 276.0
YYD3_k127_4022243_0 Ankyrin repeat K06867 - - 0.000000000002035 75.0
YYD3_k127_4022243_1 Polysaccharide biosynthesis/export protein K01991 - - 0.000001776 60.0
YYD3_k127_4051637_0 TIGRFAM galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003466 473.0
YYD3_k127_4051637_1 Alpha-L-arabinofuranosidase C-terminus K01209 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 474.0
YYD3_k127_4051637_2 inositol monophosphate 1-phosphatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 378.0
YYD3_k127_4056243_0 receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000889 299.0
YYD3_k127_4056243_1 TIGRFAM VWFA-related Acidobacterial domain K07114 - - 0.0000000006216 70.0
YYD3_k127_4068546_0 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 601.0
YYD3_k127_4068546_1 PFAM type II secretion system protein E K02283,K03609 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006713 570.0
YYD3_k127_4068546_10 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000001635 149.0
YYD3_k127_4068546_11 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000008908 103.0
YYD3_k127_4068546_12 von Willebrand factor, type A - - - 0.0000000000000000004271 100.0
YYD3_k127_4068546_14 PFAM peptidase A24A, prepilin type IV - - - 0.0000000000000002526 86.0
YYD3_k127_4068546_15 TadE-like protein - - - 0.0000000000000719 78.0
YYD3_k127_4068546_16 TadE-like protein - - - 0.000000001305 66.0
YYD3_k127_4068546_17 Tetratricopeptide repeat - - - 0.0000009882 60.0
YYD3_k127_4068546_18 - - - - 0.0001072 53.0
YYD3_k127_4068546_19 helix_turn_helix, Lux Regulon K07689,K07690 - - 0.0001109 46.0
YYD3_k127_4068546_2 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005441 332.0
YYD3_k127_4068546_20 - - - - 0.0001903 52.0
YYD3_k127_4068546_21 Flp Fap pilin component K02651 - - 0.0003215 45.0
YYD3_k127_4068546_22 PFAM Flp Fap pilin component K02651 - - 0.0007936 44.0
YYD3_k127_4068546_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 325.0
YYD3_k127_4068546_4 Belongs to the GSP D family K02280 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000324 281.0
YYD3_k127_4068546_5 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000001322 248.0
YYD3_k127_4068546_6 Type II secretion system K12510 - - 0.00000000000000000000000000000000000000000000000000000000000001683 226.0
YYD3_k127_4068546_7 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.0000000000000000000000000000000000000000000000000001294 197.0
YYD3_k127_4068546_8 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000009799 199.0
YYD3_k127_4068546_9 Type II secretion system (T2SS), protein F K12511 - - 0.00000000000000000000000000000000000000000000000000827 192.0
YYD3_k127_4072846_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 5.874e-298 924.0
YYD3_k127_4072846_1 Citrate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007916 507.0
YYD3_k127_4072846_10 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity K16038 GO:0002682,GO:0002684,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0009605,GO:0009607,GO:0016020,GO:0030312,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0071944,GO:0075136 - 0.000000578 54.0
YYD3_k127_4072846_11 peptidase - - - 0.000052 57.0
YYD3_k127_4072846_12 Phospholipase D. Active site motifs. - - - 0.0003577 54.0
YYD3_k127_4072846_2 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004772 348.0
YYD3_k127_4072846_3 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001252 272.0
YYD3_k127_4072846_4 Aldehyde oxidase and xanthine dehydrogenase a b hammerhead K03520,K11177 - 1.17.1.4,1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001765 256.0
YYD3_k127_4072846_5 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000005046 254.0
YYD3_k127_4072846_6 periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000000000000000002016 167.0
YYD3_k127_4072846_7 Carbon monoxide dehydrogenase subunit G (CoxG) - - - 0.0000000000000000000000000000000000000000884 158.0
YYD3_k127_4072846_8 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000009349 76.0
YYD3_k127_4072846_9 chlorophyll binding - - - 0.0000000008738 68.0
YYD3_k127_4076387_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 530.0
YYD3_k127_4076387_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000001188 248.0
YYD3_k127_4076387_2 Histidine kinase K07709 - 2.7.13.3 0.00000000000000000000000000000000000001737 164.0
YYD3_k127_4076387_3 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.00000000000000000000000000000000000009289 152.0
YYD3_k127_4090471_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 2.521e-269 857.0
YYD3_k127_4090471_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 507.0
YYD3_k127_4090471_2 Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 332.0
YYD3_k127_4090471_3 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 299.0
YYD3_k127_4090471_4 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000004294 172.0
YYD3_k127_4090471_5 von Willebrand factor, type A K07114,K12511 - - 0.000000000000000000000002659 115.0
YYD3_k127_4090471_6 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000669 95.0
YYD3_k127_409824_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006788 390.0
YYD3_k127_409824_1 PFAM Aminotransferase, class I K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000005273 254.0
YYD3_k127_409824_2 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000232 67.0
YYD3_k127_412308_0 endonuclease exonuclease phosphatase K07004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 424.0
YYD3_k127_412308_1 PFAM Endonuclease Exonuclease phosphatase K07004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 359.0
YYD3_k127_412308_2 DNA/RNA non-specific endonuclease K01173 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002723 302.0
YYD3_k127_412308_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000008638 149.0
YYD3_k127_412308_4 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000001116 66.0
YYD3_k127_4132607_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009253 574.0
YYD3_k127_4132607_1 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 344.0
YYD3_k127_4132607_2 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 319.0
YYD3_k127_4132607_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000000000000009856 119.0
YYD3_k127_414053_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005377 488.0
YYD3_k127_414053_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000002806 153.0
YYD3_k127_4188987_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005248 582.0
YYD3_k127_4188987_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 465.0
YYD3_k127_4188987_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 340.0
YYD3_k127_4188987_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001153 279.0
YYD3_k127_4188987_4 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003024 249.0
YYD3_k127_4188987_5 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000005224 241.0
YYD3_k127_4188987_6 beta-ketoacyl-acyl-carrier-protein synthase III activity K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000002103 238.0
YYD3_k127_4188987_7 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000001578 203.0
YYD3_k127_4188987_8 PFAM von Willebrand factor type A - - - 0.000000000000000000000000000000000000000000000005434 186.0
YYD3_k127_4202259_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 2.46e-282 888.0
YYD3_k127_4202259_1 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 6.423e-200 639.0
YYD3_k127_4202259_2 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008663 532.0
YYD3_k127_4202259_3 hydrolase of the alpha beta superfamily K07017 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005334 252.0
YYD3_k127_4202259_4 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000001695 216.0
YYD3_k127_4202259_5 Zn-dependent hydrolase, glyoxylase - - - 0.00000000000000000000000000000000000000000000000000007104 199.0
YYD3_k127_4202259_6 PDZ DHR GLGF domain protein - - - 0.0000000000000000000000000000006543 135.0
YYD3_k127_4202259_7 C4-type zinc ribbon domain K07164,K22391 - 3.5.4.16 0.0000000000000000006661 96.0
YYD3_k127_4205409_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 5.912e-249 784.0
YYD3_k127_4205409_1 radical SAM domain protein - - - 1.1e-221 696.0
YYD3_k127_4205409_10 DinB superfamily - - - 0.00000000000000000000000000000000000000000004951 167.0
YYD3_k127_4205409_11 alpha-ribazole phosphatase activity K01834 GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009628,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036293,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.4.2.11 0.0000000000000000001618 95.0
YYD3_k127_4205409_12 Outer membrane protein (OmpH-like) K06142 - - 0.00001538 55.0
YYD3_k127_4205409_2 tetratricopeptide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 546.0
YYD3_k127_4205409_3 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 494.0
YYD3_k127_4205409_4 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006609 473.0
YYD3_k127_4205409_5 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 295.0
YYD3_k127_4205409_6 Pfam:DUF2305 - - - 0.0000000000000000000000000000000000000000000000000000000000000000002308 258.0
YYD3_k127_4205409_7 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001816 230.0
YYD3_k127_4205409_8 - - - - 0.000000000000000000000000000000000000000000000006077 177.0
YYD3_k127_4205409_9 oxidation-reduction process K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000005932 169.0
YYD3_k127_4217476_0 lipopolysaccharide transport K22110 - - 0.0 1390.0
YYD3_k127_4217476_1 choline dehydrogenase activity - - - 3.473e-256 798.0
YYD3_k127_4217476_10 Major intrinsic protein K06188 - - 0.00000000000000000000000000000000000000000000000202 176.0
YYD3_k127_4217476_11 Protein of unknown function, DUF417 - - - 0.00000000000000000000000000000000000000000000001904 175.0
YYD3_k127_4217476_12 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000001573 177.0
YYD3_k127_4217476_13 water channel activity K02440,K06188 - - 0.0001341 45.0
YYD3_k127_4217476_2 Pyridine nucleotide-disulphide oxidoreductase K03885,K10716 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 602.0
YYD3_k127_4217476_3 gluconolactonase activity K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 589.0
YYD3_k127_4217476_4 alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 562.0
YYD3_k127_4217476_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004326 463.0
YYD3_k127_4217476_6 Cupin 2, conserved barrel domain protein K11477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 341.0
YYD3_k127_4217476_7 MOSC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 290.0
YYD3_k127_4217476_8 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000007507 218.0
YYD3_k127_4217476_9 Glycogen debranching enzyme - - - 0.00000000000000000000000000000000000000000000000000000000001676 209.0
YYD3_k127_4222907_0 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 416.0
YYD3_k127_4222907_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001051 282.0
YYD3_k127_4222907_2 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000003751 239.0
YYD3_k127_4222907_3 TIGRFAM lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000004715 187.0
YYD3_k127_4222907_4 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000001551 168.0
YYD3_k127_4222907_5 Methylates ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000006047 162.0
YYD3_k127_4222907_6 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.0000000000000000000000000000000000000001045 160.0
YYD3_k127_4222907_7 Histidine kinase-like ATPase domain - - - 0.00000000000000000000000000000000000265 149.0
YYD3_k127_4222907_8 - - - - 0.00000001823 63.0
YYD3_k127_4222907_9 domain, Protein - - - 0.00001274 51.0
YYD3_k127_4233463_0 Wzt C-terminal domain K09691 - - 0.00000000000000000000000005318 109.0
YYD3_k127_4233463_1 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000002152 110.0
YYD3_k127_4233463_2 protein import - - - 0.0000002189 64.0
YYD3_k127_4233463_3 PFAM periplasmic copper-binding - - - 0.0006299 53.0
YYD3_k127_4248887_0 enterobactin catabolic process - - - 1.187e-286 890.0
YYD3_k127_4248887_1 PFAM DNA mismatch repair protein MutS domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 520.0
YYD3_k127_4248887_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 457.0
YYD3_k127_4248887_3 PFAM aminoglycoside hydroxyurea antibiotic resistance kinase K04343 - 2.7.1.72 0.00000000000000000000000000000000000003915 154.0
YYD3_k127_4248887_4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K03148,K21029 - 2.7.7.73,2.7.7.80 0.000000000000000000000000000000000008897 140.0
YYD3_k127_4248887_5 D-amino acid - - - 0.0000000000000000000000001977 108.0
YYD3_k127_4258189_0 CarboxypepD_reg-like domain - - - 1.033e-227 753.0
YYD3_k127_4258189_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 582.0
YYD3_k127_4258189_10 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 302.0
YYD3_k127_4258189_11 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000001977 237.0
YYD3_k127_4258189_12 SEC-C domain protein K09858 - - 0.0000000000000000000000000000000000000000002775 163.0
YYD3_k127_4258189_13 GAF domain - - - 0.000000000000000000000000000000000000000008558 173.0
YYD3_k127_4258189_14 YndJ-like protein - - - 0.00000000000000000000000000000000000004824 155.0
YYD3_k127_4258189_15 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000002928 156.0
YYD3_k127_4258189_16 YceI-like domain - - - 0.00000000000000000000000000000002969 133.0
YYD3_k127_4258189_17 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000008405 133.0
YYD3_k127_4258189_18 Protein of unknown function (DUF1211) - - - 0.000000000000000000000000002097 120.0
YYD3_k127_4258189_19 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000009577 103.0
YYD3_k127_4258189_2 cell shape determining protein MreB K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 551.0
YYD3_k127_4258189_20 - - - - 0.000000000000000001521 89.0
YYD3_k127_4258189_21 PFAM Integral membrane protein TerC K05794 - - 0.000000000000006708 79.0
YYD3_k127_4258189_22 ABC transporter K06020 - 3.6.3.25 0.00000002141 57.0
YYD3_k127_4258189_23 shape-determining protein MreD K03571 - - 0.0002275 51.0
YYD3_k127_4258189_24 FecR protein - - - 0.0007163 51.0
YYD3_k127_4258189_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 485.0
YYD3_k127_4258189_4 PDZ domain (Also known as DHR or GLGF) K08372 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008314 408.0
YYD3_k127_4258189_5 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 411.0
YYD3_k127_4258189_6 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000409 406.0
YYD3_k127_4258189_7 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 395.0
YYD3_k127_4258189_8 protein with SCP PR1 domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 357.0
YYD3_k127_4258189_9 DUF218 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 309.0
YYD3_k127_4277634_0 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 504.0
YYD3_k127_4277634_1 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000002031 192.0
YYD3_k127_4277634_2 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 - 5.2.1.8 0.00001662 55.0
YYD3_k127_4279862_0 Peptidase family M49 - - - 8.37e-202 644.0
YYD3_k127_4279862_1 Belongs to the HpcH HpaI aldolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 566.0
YYD3_k127_4279862_2 Kef-type K transport systems, membrane components K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 529.0
YYD3_k127_4279862_3 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 311.0
YYD3_k127_4279862_5 related to C-terminal domains of K channels K07228 - - 0.0000000000000000000000000000000000000000000135 167.0
YYD3_k127_4279862_6 Kelch motif - - - 0.0000000000000000000000000000000000000003809 165.0
YYD3_k127_4279862_7 Protein of unknown function (DUF2585) - - - 0.000000000000000000000000000000000000003535 154.0
YYD3_k127_4306498_0 Prolyl oligopeptidase family - - - 8.252e-266 836.0
YYD3_k127_4306498_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 620.0
YYD3_k127_4306498_10 WG containing repeat - - - 0.00000000000000000000000000000000000000000000000000000000000005823 229.0
YYD3_k127_4306498_11 AntiSigma factor - - - 0.00000000000000000000000000000000000000000000000000000000001062 216.0
YYD3_k127_4306498_12 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000009473 209.0
YYD3_k127_4306498_13 Major intrinsic protein K06188 - - 0.00000000000000000000000000000000000000000000000000000004427 203.0
YYD3_k127_4306498_14 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000009009 196.0
YYD3_k127_4306498_15 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000000000004696 192.0
YYD3_k127_4306498_16 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000001294 192.0
YYD3_k127_4306498_17 - - - - 0.0000000000000000000000000000000000000000000000000006287 188.0
YYD3_k127_4306498_18 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000003323 188.0
YYD3_k127_4306498_19 SnoaL-like domain - - - 0.000000000000000000000000000000000667 133.0
YYD3_k127_4306498_2 PFAM TonB-dependent Receptor Plug - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007612 620.0
YYD3_k127_4306498_20 PFAM DinB family protein - - - 0.000000000000000000000000000086 122.0
YYD3_k127_4306498_21 Protein of unknown function (DUF3303) - - - 0.000000000000000000000000001712 113.0
YYD3_k127_4306498_22 RNA recognition motif - - - 0.00000000000000000000000003176 115.0
YYD3_k127_4306498_23 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000006821 107.0
YYD3_k127_4306498_24 Cro/C1-type HTH DNA-binding domain K07727 - - 0.000000000001037 72.0
YYD3_k127_4306498_25 Bacterial pullanase-associated domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.000000000005066 78.0
YYD3_k127_4306498_27 Calcineurin-like phosphoesterase - - - 0.00000003136 59.0
YYD3_k127_4306498_28 - - - - 0.00000004114 58.0
YYD3_k127_4306498_29 Putative zinc-finger - - - 0.000001185 54.0
YYD3_k127_4306498_3 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 469.0
YYD3_k127_4306498_4 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002661 491.0
YYD3_k127_4306498_5 PFAM Fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 379.0
YYD3_k127_4306498_6 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007355 361.0
YYD3_k127_4306498_7 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003475 349.0
YYD3_k127_4306498_8 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004982 329.0
YYD3_k127_4306498_9 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008871 308.0
YYD3_k127_4341179_0 High-affinity nickel-transport protein K07241 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 403.0
YYD3_k127_4341179_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000002596 243.0
YYD3_k127_4341179_2 PDZ DHR GLGF domain protein - - - 0.0000000000000000000000000000000000000000001077 175.0
YYD3_k127_4341179_3 DNA-templated transcription, initiation K03088 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0010468,GO:0010565,GO:0016020,GO:0019216,GO:0019217,GO:0019222,GO:0030312,GO:0031323,GO:0044464,GO:0050789,GO:0050794,GO:0060255,GO:0062012,GO:0065007,GO:0071944,GO:0080090 - 0.0000000000000000000000000000000000000001608 157.0
YYD3_k127_4341179_4 PFAM DoxX family protein K15977 - - 0.0000000000000000000000004931 109.0
YYD3_k127_4341179_5 ChrR Cupin-like domain - - - 0.00000000003723 72.0
YYD3_k127_4362393_0 formate C-acetyltransferase glycine radical K00656 - 2.3.1.54 0.0 1247.0
YYD3_k127_4362393_1 serine dehydratase beta chain K01752 - 4.3.1.17 1.245e-262 818.0
YYD3_k127_4362393_10 Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005076 319.0
YYD3_k127_4362393_11 Belongs to the glutaminase family K01425 - 3.5.1.2 0.000000002387 62.0
YYD3_k127_4362393_2 Fumarase C C-terminus - - - 5.423e-251 782.0
YYD3_k127_4362393_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005903 598.0
YYD3_k127_4362393_4 PFAM major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 542.0
YYD3_k127_4362393_5 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 521.0
YYD3_k127_4362393_6 Asparaginase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 514.0
YYD3_k127_4362393_7 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006245 457.0
YYD3_k127_4362393_8 Protein of unknown function (DUF3300) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 424.0
YYD3_k127_4362393_9 Protein of unknown function (DUF2950) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 379.0
YYD3_k127_4388319_0 Flavin containing amine oxidoreductase - - - 2.663e-298 920.0
YYD3_k127_4388319_1 Carboxypeptidase regulatory-like domain - - - 3.461e-244 788.0
YYD3_k127_4388319_10 phosphatidate phosphatase activity K19302 - 3.6.1.27 0.0000000000000000000000000000000003215 140.0
YYD3_k127_4388319_11 Glycoside hydrolase - - - 0.0000000000000000000000000007673 122.0
YYD3_k127_4388319_12 Belongs to the helicase family. UvrD subfamily K03169,K16899 - 3.6.4.12,5.99.1.2 0.00000886 48.0
YYD3_k127_4388319_13 Threonine aldolase K01620 - 4.1.2.48 0.00006142 47.0
YYD3_k127_4388319_2 TIGRFAM phytoene desaturase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006091 569.0
YYD3_k127_4388319_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 557.0
YYD3_k127_4388319_4 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 460.0
YYD3_k127_4388319_5 Ring hydroxylating alpha subunit (catalytic domain) K00479 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 439.0
YYD3_k127_4388319_6 amino acid K03294,K20265 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006796 365.0
YYD3_k127_4388319_7 PhoQ Sensor K07640 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 350.0
YYD3_k127_4388319_8 Transcriptional regulatory protein, C terminal K07662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 311.0
YYD3_k127_4388319_9 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000006547 225.0
YYD3_k127_4389680_0 4Fe-4S dicluster domain K00184 - - 0.0 1071.0
YYD3_k127_4389680_1 Polysulphide reductase, NrfD K00185 - - 3.75e-221 693.0
YYD3_k127_4389680_2 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 286.0
YYD3_k127_4389680_3 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000000000000000003073 224.0
YYD3_k127_4389680_4 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000009825 215.0
YYD3_k127_4389680_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000002652 199.0
YYD3_k127_4389680_7 DDE domain - - - 0.00006179 45.0
YYD3_k127_4397193_0 Hydrolase CocE NonD family - - - 2.522e-311 963.0
YYD3_k127_4397193_1 PFAM ABC transporter related K06020 - 3.6.3.25 3.437e-305 942.0
YYD3_k127_4397193_2 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 623.0
YYD3_k127_4397193_3 Transporter-associated region K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 529.0
YYD3_k127_4397193_4 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 438.0
YYD3_k127_4397193_5 PFAM phospholipase Carboxylesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005947 285.0
YYD3_k127_4397193_6 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000001613 177.0
YYD3_k127_4397193_7 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000006693 111.0
YYD3_k127_4397193_8 N-acetyldiaminopimelate deacetylase activity K12941 - - 0.000000000000000000000008633 101.0
YYD3_k127_4397193_9 Putative phosphatase (DUF442) - - - 0.000000000000002586 90.0
YYD3_k127_4411193_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 557.0
YYD3_k127_4411193_1 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 478.0
YYD3_k127_4411193_10 Tetratricopeptide repeat - - - 0.00001102 57.0
YYD3_k127_4411193_2 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008045 394.0
YYD3_k127_4411193_3 AAA domain K02450 - - 0.000000000000000000000000000000000000000000000000000000000000005384 228.0
YYD3_k127_4411193_4 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000001532 224.0
YYD3_k127_4411193_5 Photosynthesis system II assembly factor YCF48 - - - 0.00000000000000000000000000000000000000000000000007106 191.0
YYD3_k127_4411193_6 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000001457 173.0
YYD3_k127_4411193_7 Lipopolysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000008558 173.0
YYD3_k127_4411193_8 Capsular exopolysaccharide family K08252 - 2.7.10.1 0.0000000000000000000000000000000000000001932 163.0
YYD3_k127_4411193_9 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01991 - - 0.000000000000006841 86.0
YYD3_k127_4412217_0 Molydopterin dinucleotide binding domain K00123 - 1.17.1.9 0.0 1382.0
YYD3_k127_4412217_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008478 582.0
YYD3_k127_4412217_10 Protein of unknown function (DUF1326) - - - 0.00000000000000000001955 100.0
YYD3_k127_4412217_11 Ankyrin repeats (many copies) - - - 0.000000000000000004156 94.0
YYD3_k127_4412217_12 ECF sigma factor - - - 0.00000000000006455 73.0
YYD3_k127_4412217_13 WD40 repeat, subgroup - - - 0.000000000001195 81.0
YYD3_k127_4412217_2 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 441.0
YYD3_k127_4412217_3 4Fe-4S dicluster domain K07307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003859 334.0
YYD3_k127_4412217_4 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008536 313.0
YYD3_k127_4412217_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000000000000004561 214.0
YYD3_k127_4412217_6 PKD domain - - - 0.0000000000000000000000000000000000000000000000000000000006049 226.0
YYD3_k127_4412217_7 crp fnr family K01420 - - 0.0000000000000000000000000000000000000000000000000000000007144 208.0
YYD3_k127_4412217_8 formate dehydrogenase K00127,K08350 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006091,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009326,GO:0009987,GO:0015942,GO:0015944,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0020037,GO:0022900,GO:0031224,GO:0031226,GO:0032787,GO:0032991,GO:0033554,GO:0036397,GO:0043436,GO:0044237,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0050896,GO:0051716,GO:0052738,GO:0055114,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.000000000000000000000000000000000000000000006731 175.0
YYD3_k127_4412217_9 protein involved in formate dehydrogenase formation K02380 - - 0.000000000000000000000000000000000000007193 155.0
YYD3_k127_4416512_0 Alpha-2-Macroglobulin K06894 - - 6.372e-302 985.0
YYD3_k127_4416512_1 Protein of unknown function (DUF1175) K09934 - - 0.000000000000000000000000000000000000000000000000000003575 201.0
YYD3_k127_4416540_0 chaperone-mediated protein folding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 448.0
YYD3_k127_4416540_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 390.0
YYD3_k127_4416540_2 - - - - 0.0000000002332 67.0
YYD3_k127_4424766_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.789e-291 915.0
YYD3_k127_4424766_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 3.069e-209 670.0
YYD3_k127_4424766_10 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000002229 247.0
YYD3_k127_4424766_11 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000003257 230.0
YYD3_k127_4424766_12 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000953 221.0
YYD3_k127_4424766_13 TIGRFAM geranylgeranyl reductase - - - 0.000000000000000000000000000000000000000000001158 181.0
YYD3_k127_4424766_14 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000301 108.0
YYD3_k127_4424766_15 Jag_N K06346 - - 0.000000000000000000000004638 107.0
YYD3_k127_4424766_16 Thioesterase superfamily K07107 - - 0.0000000000000000000003219 102.0
YYD3_k127_4424766_17 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000008059 70.0
YYD3_k127_4424766_18 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000002089 68.0
YYD3_k127_4424766_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006693 443.0
YYD3_k127_4424766_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 434.0
YYD3_k127_4424766_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 366.0
YYD3_k127_4424766_5 pfam ammecr1 K06990,K09141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 359.0
YYD3_k127_4424766_6 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006863 329.0
YYD3_k127_4424766_7 Sporulation initiation inhibitor protein Soj K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 299.0
YYD3_k127_4424766_8 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006426 261.0
YYD3_k127_4424766_9 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003231 258.0
YYD3_k127_444239_0 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000716 222.0
YYD3_k127_444239_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000009324 198.0
YYD3_k127_444239_2 PFAM Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000002337 181.0
YYD3_k127_444239_3 FOG Ankyrin repeat K06867,K21440 - - 0.000000000000002342 82.0
YYD3_k127_444239_4 amidohydrolase - - - 0.00000000000001003 77.0
YYD3_k127_4449243_0 SPFH domain / Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006508 562.0
YYD3_k127_4449243_1 Zinc carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 488.0
YYD3_k127_4456976_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 445.0
YYD3_k127_4456976_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 306.0
YYD3_k127_4456976_10 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000005777 141.0
YYD3_k127_4456976_11 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.00000001392 55.0
YYD3_k127_4456976_2 oxidoreductase activity, acting on CH-OH group of donors K13237 - 1.3.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 298.0
YYD3_k127_4456976_3 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003541 274.0
YYD3_k127_4456976_4 Inositol monophosphatase family K01092,K05602 - 3.1.3.15,3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002232 275.0
YYD3_k127_4456976_5 belongs to the PRA-CH family K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000009944 263.0
YYD3_k127_4456976_6 TIGRFAM phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000001674 221.0
YYD3_k127_4456976_7 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000169 218.0
YYD3_k127_4456976_8 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000004225 194.0
YYD3_k127_4456976_9 TIGRFAM Diguanylate cyclase K21022 - 2.7.7.65 0.00000000000000000000000000000000004731 146.0
YYD3_k127_4476735_0 Belongs to the arginase family K01476 - 3.5.3.1 0.000000000000000000000000003093 123.0
YYD3_k127_4476735_1 Membrane - - - 0.00000000000000000000004471 105.0
YYD3_k127_4476735_2 guanyl-nucleotide exchange factor activity K01179,K03929,K09612,K12287,K19701,K19702 GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005623,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.2.1.4,3.4.11.10,3.4.11.24,3.4.11.6 0.000000008572 68.0
YYD3_k127_4476735_3 - - - - 0.00000001476 64.0
YYD3_k127_4476735_4 - - - - 0.00000005194 60.0
YYD3_k127_4476735_5 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K03205 - - 0.0001415 55.0
YYD3_k127_4480697_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 6.037e-310 960.0
YYD3_k127_4480697_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004244 443.0
YYD3_k127_4480697_10 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000008417 183.0
YYD3_k127_4480697_11 Two component regulator propeller - - - 0.000000000000000000000000000000000000001676 171.0
YYD3_k127_4480697_12 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000001246 155.0
YYD3_k127_4480697_13 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000001108 158.0
YYD3_k127_4480697_14 bacterial (prokaryotic) histone like domain K03530 - - 0.000000000000000000000000000000002706 133.0
YYD3_k127_4480697_15 AI-2E family transporter - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000000003433 144.0
YYD3_k127_4480697_16 function (DUF490) K09800 - - 0.00000000000000007775 97.0
YYD3_k127_4480697_2 Belongs to the CarA family K01956 GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 438.0
YYD3_k127_4480697_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007484 326.0
YYD3_k127_4480697_4 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000441 314.0
YYD3_k127_4480697_5 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 317.0
YYD3_k127_4480697_6 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000756 284.0
YYD3_k127_4480697_7 Lumazine binding domain K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000009262 221.0
YYD3_k127_4480697_8 surface antigen variable number - - - 0.00000000000000000000000000000000000000000000000000000000001039 237.0
YYD3_k127_4480697_9 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000000001961 207.0
YYD3_k127_4507917_0 COG0635 Coproporphyrinogen III oxidase and related Fe-S - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 504.0
YYD3_k127_4507917_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 443.0
YYD3_k127_4507917_2 COG0644 Dehydrogenases (flavoproteins) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 421.0
YYD3_k127_4507917_3 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008362 282.0
YYD3_k127_4512377_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004288 280.0
YYD3_k127_4512377_1 Involved in the tonB-independent uptake of proteins - - - 0.000000002085 61.0
YYD3_k127_4553364_0 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001177 246.0
YYD3_k127_4553364_1 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.00000000000000000000000000000000000000009963 156.0
YYD3_k127_4553364_10 - - - - 0.0005617 48.0
YYD3_k127_4553364_11 CHAT domain - - - 0.0009028 47.0
YYD3_k127_4553364_2 RNA recognition motif - - - 0.00000000000000000000000000000001123 131.0
YYD3_k127_4553364_3 glyoxalase III activity - - - 0.0000000000000000000000001232 113.0
YYD3_k127_4553364_4 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000002096 108.0
YYD3_k127_4553364_5 DNA-binding transcription factor activity - - - 0.00000000000000000000008488 103.0
YYD3_k127_4553364_6 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000001476 89.0
YYD3_k127_4553364_7 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000001235 63.0
YYD3_k127_4553364_8 amine dehydrogenase activity - - - 0.000000000349 65.0
YYD3_k127_4553364_9 oxidoreductase activity - - - 0.00000001529 67.0
YYD3_k127_4555378_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006048 399.0
YYD3_k127_4555378_1 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 377.0
YYD3_k127_4555378_2 BadF/BadG/BcrA/BcrD ATPase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008636 311.0
YYD3_k127_4555378_3 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001272 245.0
YYD3_k127_4555378_4 PFAM ATPase, BadF BadG BcrA BcrD type - - - 0.00000000000000000000000000000000000000000000000000000000000000007823 233.0
YYD3_k127_4555378_5 NAD dependent epimerase/dehydratase family K07535 - - 0.0000000000000000000000000000000000000000000000000000000000000002031 229.0
YYD3_k127_4555378_6 - - - - 0.00000000000000000000000000009977 130.0
YYD3_k127_4555378_7 PFAM Phage integrase, N-terminal SAM-like domain - - - 0.00000000006164 65.0
YYD3_k127_4568594_0 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 352.0
YYD3_k127_4568594_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009936 262.0
YYD3_k127_4568594_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000001258 210.0
YYD3_k127_4568594_3 - - - - 0.00000000000000000000000000000004322 129.0
YYD3_k127_4612684_0 Carboxypeptidase regulatory-like domain - - - 7.728e-262 841.0
YYD3_k127_4612684_1 alpha amylase, catalytic region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 350.0
YYD3_k127_4612684_2 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 290.0
YYD3_k127_4612684_3 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000781 278.0
YYD3_k127_4612684_4 region 4 type 2 K03088 - - 0.00000000000000000000000003656 115.0
YYD3_k127_4612684_5 Anti-sigma factor - - - 0.0000000000000000000000003175 122.0
YYD3_k127_4612684_6 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000001282 90.0
YYD3_k127_4612684_7 PFAM Cation efflux - - - 0.000004554 52.0
YYD3_k127_4612684_8 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.0003881 44.0
YYD3_k127_4618003_0 Penicillin amidase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 593.0
YYD3_k127_4618003_1 COG3653 N-acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 540.0
YYD3_k127_4618003_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 505.0
YYD3_k127_4618003_3 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 344.0
YYD3_k127_4618003_4 MOSC N-terminal beta barrel domain K07140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007175 255.0
YYD3_k127_4618003_5 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000001039 235.0
YYD3_k127_4618003_6 - - - - 0.0000000000000000000000000000000000000000000000000001289 199.0
YYD3_k127_4618003_7 Domain of unknown function (DUF4136) - - - 0.000000000000000000000000000000000000000000000007688 178.0
YYD3_k127_4618003_8 chlorophyll binding - - - 0.000000000000000000000000000000000000000001092 169.0
YYD3_k127_4618003_9 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000001505 154.0
YYD3_k127_4626988_0 serine-type peptidase activity K01990,K08884,K12132,K18912 - 1.14.99.50,2.7.11.1 2.713e-258 827.0
YYD3_k127_4626988_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000005842 113.0
YYD3_k127_4627519_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 433.0
YYD3_k127_4627519_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 351.0
YYD3_k127_4627519_2 electron transfer activity K00428 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002473 284.0
YYD3_k127_4627519_3 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000001158 236.0
YYD3_k127_4627519_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000005804 180.0
YYD3_k127_4627519_5 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000001363 149.0
YYD3_k127_4627519_6 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000003077 139.0
YYD3_k127_4627519_7 Iron-sulphur cluster biosynthesis - - - 0.000000000000000000000000000000000006638 140.0
YYD3_k127_4627519_8 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.0000000000000000000000000000003253 130.0
YYD3_k127_4633291_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 7.513e-292 912.0
YYD3_k127_4633291_1 Involved in the tonB-independent uptake of proteins K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 521.0
YYD3_k127_4633291_2 permease K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 348.0
YYD3_k127_4633291_3 WD40 repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 331.0
YYD3_k127_4633291_4 xanthine dehydrogenase activity K13479 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000001922 251.0
YYD3_k127_4633291_5 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000002864 213.0
YYD3_k127_4633291_6 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000001324 201.0
YYD3_k127_4633291_7 Uncharacterized protein family UPF0016 - - - 0.0000000000000000000000004659 106.0
YYD3_k127_4633291_8 integral membrane protein - - - 0.000000000002778 76.0
YYD3_k127_4633291_9 iron ion homeostasis - - - 0.00000001561 67.0
YYD3_k127_4635223_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 586.0
YYD3_k127_4635223_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 484.0
YYD3_k127_4635223_2 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 346.0
YYD3_k127_4635223_3 lipopolysaccharide heptosyltransferase K02841,K02843 - - 0.00000000000000000000000000000000109 143.0
YYD3_k127_4635223_4 phosphorelay signal transduction system - - - 0.000000002438 68.0
YYD3_k127_4635223_5 self proteolysis - - - 0.0002192 53.0
YYD3_k127_4644164_0 Radical SAM - - - 8.629e-218 694.0
YYD3_k127_4644164_1 Protein kinase domain K12132 - 2.7.11.1 2.49e-200 654.0
YYD3_k127_4644164_10 Protein of unknown function (DUF1003) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008383 256.0
YYD3_k127_4644164_11 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000001038 246.0
YYD3_k127_4644164_12 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000003279 177.0
YYD3_k127_4644164_13 transcriptional regulator K03655 - 3.6.4.12 0.0000000000000000000000000000000008445 146.0
YYD3_k127_4644164_14 Reprolysin (M12B) family zinc metalloprotease - - - 0.00000000000000000002715 105.0
YYD3_k127_4644164_15 Trypsin-like peptidase domain - - - 0.00000001081 68.0
YYD3_k127_4644164_16 - - - - 0.00000007542 63.0
YYD3_k127_4644164_17 GAF domain K02482 - 2.7.13.3 0.000001063 55.0
YYD3_k127_4644164_18 Phage integrase family - - - 0.000005509 50.0
YYD3_k127_4644164_19 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000007789 49.0
YYD3_k127_4644164_2 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006833 582.0
YYD3_k127_4644164_20 - - - - 0.00001049 56.0
YYD3_k127_4644164_21 Protein conserved in bacteria - - - 0.00002249 55.0
YYD3_k127_4644164_3 Sodium Bile acid symporter family K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006218 559.0
YYD3_k127_4644164_4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008649 329.0
YYD3_k127_4644164_5 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007673 301.0
YYD3_k127_4644164_6 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 299.0
YYD3_k127_4644164_7 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005908 288.0
YYD3_k127_4644164_8 PFAM Organic solvent tolerance protein K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003179 288.0
YYD3_k127_4644164_9 Methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000004194 263.0
YYD3_k127_4678229_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009063 434.0
YYD3_k127_4678229_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 396.0
YYD3_k127_4678229_10 Sulfate ABC transporter substrate-binding protein K02048 - - 0.0000000000000000000000000000000000000000000000000000000000000001064 234.0
YYD3_k127_4678229_11 orotate phosphoribosyltransferase activity K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000005734 224.0
YYD3_k127_4678229_12 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000002018 211.0
YYD3_k127_4678229_13 PFAM glycosyl transferase family 39 - - - 0.000000000000000000000000000000000000000000000000000004952 210.0
YYD3_k127_4678229_14 DNA polymerase III, delta subunit, C terminal K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000002268 195.0
YYD3_k127_4678229_15 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000000000000000000044 189.0
YYD3_k127_4678229_16 TIGRFAM sulfate ABC transporter, inner membrane subunit CysT K02046 - - 0.0000000000000000000000000000000000000000000000000165 190.0
YYD3_k127_4678229_17 PFAM phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.0000000000000000000000000000000000000001488 160.0
YYD3_k127_4678229_18 Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02342,K03763 - 2.7.7.7 0.0000000000000000000000000000000000000002591 160.0
YYD3_k127_4678229_19 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000004311 121.0
YYD3_k127_4678229_2 SpoIVB peptidase S55 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 377.0
YYD3_k127_4678229_20 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000003083 100.0
YYD3_k127_4678229_21 PFAM SNARE associated Golgi protein - - - 0.000000000000000000006394 100.0
YYD3_k127_4678229_22 PFAM SNARE associated Golgi protein - - - 0.0000000000000000000629 98.0
YYD3_k127_4678229_23 Penicillin amidase K01434 - 3.5.1.11 0.000000000000002342 79.0
YYD3_k127_4678229_24 - - - - 0.0000000003557 70.0
YYD3_k127_4678229_25 Protein of unknown function (DUF2490) - - - 0.0000000667 63.0
YYD3_k127_4678229_26 RDD family - - - 0.0000001258 59.0
YYD3_k127_4678229_27 Alpha beta - - - 0.0005965 51.0
YYD3_k127_4678229_3 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000185 288.0
YYD3_k127_4678229_4 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000494 272.0
YYD3_k127_4678229_5 Oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006217 275.0
YYD3_k127_4678229_6 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005094 269.0
YYD3_k127_4678229_7 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000005186 249.0
YYD3_k127_4678229_8 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000000000000000000000129 260.0
YYD3_k127_4678229_9 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000002215 241.0
YYD3_k127_468485_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007718 430.0
YYD3_k127_468485_1 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.00000000000000000003542 91.0
YYD3_k127_4694507_0 protease with the C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 514.0
YYD3_k127_4694507_1 Major Facilitator Superfamily K08151 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006395 294.0
YYD3_k127_4694507_10 - - - - 0.00000000000001056 84.0
YYD3_k127_4694507_11 TIGRFAM TonB K03832 - - 0.000000002825 65.0
YYD3_k127_4694507_12 SdrD B-like domain - - - 0.0000002465 64.0
YYD3_k127_4694507_13 Right handed beta helix region - - - 0.0000009825 62.0
YYD3_k127_4694507_2 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000266 266.0
YYD3_k127_4694507_3 Enoyl-CoA hydratase/isomerase K01715,K13767 GO:0003674,GO:0003824,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000001399 227.0
YYD3_k127_4694507_4 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000000000000000000000000361 215.0
YYD3_k127_4694507_5 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000003774 205.0
YYD3_k127_4694507_6 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000005886 176.0
YYD3_k127_4694507_7 COG3209 Rhs family protein - - - 0.0000000000000000000000001219 117.0
YYD3_k127_4694507_8 Rhs Element Vgr Protein K11904 - - 0.0000000000000000000002835 105.0
YYD3_k127_4694507_9 DoxX K15977 - - 0.0000000000000000000004509 102.0
YYD3_k127_4730028_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 1.515e-292 920.0
YYD3_k127_4730028_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 480.0
YYD3_k127_4730028_10 Sulfatase-modifying factor enzyme 1 K20333 - - 0.00000000000000000000000000001682 137.0
YYD3_k127_4730028_11 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000512 110.0
YYD3_k127_4730028_12 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.00000000000000000001188 100.0
YYD3_k127_4730028_13 Tetratricopeptide repeat - - - 0.00000000000000004356 94.0
YYD3_k127_4730028_14 Belongs to the 'phage' integrase family - - - 0.0000000000401 68.0
YYD3_k127_4730028_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 460.0
YYD3_k127_4730028_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 402.0
YYD3_k127_4730028_4 PFAM Peptidase M19, renal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005669 312.0
YYD3_k127_4730028_5 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 294.0
YYD3_k127_4730028_6 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000212 231.0
YYD3_k127_4730028_7 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000005663 215.0
YYD3_k127_4730028_8 Peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000208 164.0
YYD3_k127_4730028_9 - - - - 0.000000000000000000000000000001308 138.0
YYD3_k127_4730875_0 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0 1047.0
YYD3_k127_4730875_1 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 4.18e-271 843.0
YYD3_k127_4730875_10 Transcriptional regulator, LysR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001712 251.0
YYD3_k127_4730875_11 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000208 246.0
YYD3_k127_4730875_12 chromosome segregation K03497 - - 0.000000000000000000000000000000000000000000000000000000000001684 218.0
YYD3_k127_4730875_13 SCO1/SenC - - - 0.00000000000000000000000000000000000000000000000000000007809 204.0
YYD3_k127_4730875_14 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000008549 198.0
YYD3_k127_4730875_15 Bifunctional nuclease K08999 - - 0.000000000000000000000000000000000000000000000001012 179.0
YYD3_k127_4730875_16 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000001716 177.0
YYD3_k127_4730875_17 ACT domain K01653 - 2.2.1.6 0.000000000000000000000000000000000000000001843 161.0
YYD3_k127_4730875_18 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000005654 138.0
YYD3_k127_4730875_19 PQQ enzyme repeat - - - 0.000000000000000000000000000425 128.0
YYD3_k127_4730875_2 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 1.361e-201 643.0
YYD3_k127_4730875_3 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 2.446e-201 638.0
YYD3_k127_4730875_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 467.0
YYD3_k127_4730875_5 Multicopper oxidase K00368,K22349 - 1.16.3.3,1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 462.0
YYD3_k127_4730875_6 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050497,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 361.0
YYD3_k127_4730875_7 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003966 348.0
YYD3_k127_4730875_8 Cobyrinic acid ac-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 292.0
YYD3_k127_4730875_9 oxidoreductase activity K00505 - 1.14.18.1 0.000000000000000000000000000000000000000000000000000000000000000000000002682 261.0
YYD3_k127_4732208_0 Protein involved in meta-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 294.0
YYD3_k127_4732208_1 Proprotein convertase P-domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004845 314.0
YYD3_k127_4732208_2 involved in biosynthesis of extracellular polysaccharides - - - 0.000000000000000000000000000000000000000000000001996 175.0
YYD3_k127_4732208_3 Dna alkylation repair - - - 0.0000000000000000000000000000000000000000000003149 177.0
YYD3_k127_4732208_4 PKD domain - - - 0.00001047 54.0
YYD3_k127_4732208_5 O-methyltransferase activity - - - 0.00002436 52.0
YYD3_k127_4739354_0 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000001241 214.0
YYD3_k127_4739354_1 Uncharacterized conserved protein (DUF2203) - - - 0.00000000000000000002293 96.0
YYD3_k127_4754298_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 456.0
YYD3_k127_4754298_1 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 450.0
YYD3_k127_4754298_2 Belongs to the aldehyde dehydrogenase family K00128,K22445 - 1.2.1.3,1.2.99.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000193 289.0
YYD3_k127_4754298_3 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000141 273.0
YYD3_k127_4754298_4 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000218 97.0
YYD3_k127_4754298_5 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000001166 102.0
YYD3_k127_4783944_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.0 1455.0
YYD3_k127_4783944_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1202.0
YYD3_k127_4783944_10 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000000000003742 86.0
YYD3_k127_4783944_11 PFAM Rhodanese domain protein - - - 0.00000000003497 68.0
YYD3_k127_4783944_12 electron transfer activity K00428 - 1.11.1.5 0.0000000009756 65.0
YYD3_k127_4783944_13 outer membrane autotransporter barrel domain protein - - - 0.00002046 53.0
YYD3_k127_4783944_2 PFAM Amino acid permease K03294 - - 1.124e-221 705.0
YYD3_k127_4783944_3 Carbon starvation protein K06200 - - 5.354e-218 694.0
YYD3_k127_4783944_4 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 608.0
YYD3_k127_4783944_5 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 403.0
YYD3_k127_4783944_6 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.00000000000000000000000000000000000000000000347 177.0
YYD3_k127_4783944_7 BioY family K03523 - - 0.0000000000000000000000000000000000000000001314 166.0
YYD3_k127_4783944_8 PFAM Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000002346 147.0
YYD3_k127_4783944_9 deaminated base DNA N-glycosylase activity K21929 - 3.2.2.27 0.00000000000000000000000000000000001153 143.0
YYD3_k127_481290_0 ADP-glyceromanno-heptose 6-epimerase activity K01710,K08678 - 4.1.1.35,4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 496.0
YYD3_k127_481290_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 379.0
YYD3_k127_481290_2 Glycosyl transferase family 4 K02851 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0030145,GO:0034645,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0045229,GO:0046872,GO:0046914,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:1901576 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000000008674 254.0
YYD3_k127_481290_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000001616 124.0
YYD3_k127_4905126_0 TonB-dependent Receptor Plug Domain K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 397.0
YYD3_k127_4905126_1 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000001105 131.0
YYD3_k127_4912474_0 Sortilin, neurotensin receptor 3, - - - 0.0 1395.0
YYD3_k127_4912474_1 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 600.0
YYD3_k127_4912474_10 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000009764 163.0
YYD3_k127_4912474_11 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000001324 161.0
YYD3_k127_4912474_12 AMP binding - - - 0.0000000000000008957 83.0
YYD3_k127_4912474_13 ATP-grasp domain - - - 0.000000000000006999 78.0
YYD3_k127_4912474_14 Protein of unknown function (DUF664) - - - 0.00000000000004767 79.0
YYD3_k127_4912474_15 Domain of unknown function (DUF4445) - - - 0.00000008204 61.0
YYD3_k127_4912474_17 TIGRFAM TonB K03832 - - 0.00004138 55.0
YYD3_k127_4912474_2 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 417.0
YYD3_k127_4912474_3 Dehydrogenase K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008076 398.0
YYD3_k127_4912474_4 Belongs to the CinA family K03742 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 392.0
YYD3_k127_4912474_5 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005119 338.0
YYD3_k127_4912474_6 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000413 307.0
YYD3_k127_4912474_7 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004386 297.0
YYD3_k127_4912474_8 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000001511 192.0
YYD3_k127_4912474_9 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000005483 174.0
YYD3_k127_4914841_0 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 367.0
YYD3_k127_4914841_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 323.0
YYD3_k127_4914841_10 - - - - 0.000000000000000000000228 108.0
YYD3_k127_4914841_11 Acetyltransferase K06976 - - 0.000000000000000007134 94.0
YYD3_k127_4914841_12 COG0500 SAM-dependent methyltransferases - - - 0.000000000004965 74.0
YYD3_k127_4914841_2 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005603 314.0
YYD3_k127_4914841_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000002501 175.0
YYD3_k127_4914841_4 OsmC-like protein K07397 - - 0.00000000000000000000000000000000000000001791 157.0
YYD3_k127_4914841_5 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000006036 148.0
YYD3_k127_4914841_6 - - - - 0.00000000000000000000000000007349 128.0
YYD3_k127_4914841_7 IMP dehydrogenase activity - - - 0.0000000000000000000000000689 112.0
YYD3_k127_4914841_8 response regulator K02667 - - 0.000000000000000000000007084 107.0
YYD3_k127_4914841_9 Bacterial DNA-binding protein K03530 - - 0.00000000000000000000003422 102.0
YYD3_k127_4921610_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004349 598.0
YYD3_k127_4921610_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000005074 209.0
YYD3_k127_4921610_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000003336 143.0
YYD3_k127_4921610_3 PFAM Bacterial regulatory protein, arsR family - - - 0.0000000000000000000000001746 107.0
YYD3_k127_4937890_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein K01322,K01354 - 3.4.21.26,3.4.21.83 7.224e-258 812.0
YYD3_k127_4937890_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 496.0
YYD3_k127_4937890_11 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000001815 71.0
YYD3_k127_4937890_12 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000003497 67.0
YYD3_k127_4937890_13 Domain of unknown function (DUF309) - - - 0.000000001215 65.0
YYD3_k127_4937890_2 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 435.0
YYD3_k127_4937890_3 gluconolactonase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 295.0
YYD3_k127_4937890_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000001609 220.0
YYD3_k127_4937890_5 Thioredoxin reductase K00384,K03387 - 1.8.1.9 0.00000000000000000000000000000000000000000000000008927 189.0
YYD3_k127_4937890_6 phosphoprotein phosphatase activity K07313 - 3.1.3.16 0.0000000000000000000000000000000000000003662 158.0
YYD3_k127_4937890_7 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.00000000000000000000000000000009554 127.0
YYD3_k127_4937890_8 - - - - 0.0000000000000000000000000001658 128.0
YYD3_k127_4937890_9 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) K10794 - 1.21.4.1 0.0000000000000000000000004162 115.0
YYD3_k127_4942184_0 MacB-like periplasmic core domain - - - 2.399e-239 764.0
YYD3_k127_4942184_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 574.0
YYD3_k127_4942184_2 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005688 268.0
YYD3_k127_4942184_3 efflux transmembrane transporter activity - - - 0.000000000000000138 82.0
YYD3_k127_4949479_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 1.626e-246 773.0
YYD3_k127_4949479_1 PFAM peptidase M16 domain protein K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005067 491.0
YYD3_k127_4949479_2 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008207 457.0
YYD3_k127_4949479_3 Histidine kinase K02668,K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000002626 241.0
YYD3_k127_4949479_4 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000251 105.0
YYD3_k127_4958570_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2013.0
YYD3_k127_4958570_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1939.0
YYD3_k127_4958570_10 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000002375 211.0
YYD3_k127_4958570_11 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000004476 213.0
YYD3_k127_4958570_12 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000001749 198.0
YYD3_k127_4958570_13 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000001261 199.0
YYD3_k127_4958570_14 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000004724 170.0
YYD3_k127_4958570_15 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000001261 156.0
YYD3_k127_4958570_16 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000004832 153.0
YYD3_k127_4958570_17 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.000000000000000003984 95.0
YYD3_k127_4958570_18 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000006295 84.0
YYD3_k127_4958570_19 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000001394 60.0
YYD3_k127_4958570_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 2.867e-217 678.0
YYD3_k127_4958570_3 Belongs to the PEP-utilizing enzyme family K01006,K01007 - 2.7.9.1,2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 593.0
YYD3_k127_4958570_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 404.0
YYD3_k127_4958570_5 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 314.0
YYD3_k127_4958570_6 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 300.0
YYD3_k127_4958570_7 Pyridoxal-dependent decarboxylase conserved domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 300.0
YYD3_k127_4958570_8 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000008675 258.0
YYD3_k127_4958570_9 PFAM Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000008485 227.0
YYD3_k127_4958835_0 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000005864 155.0
YYD3_k127_4958835_1 - - - - 0.0000000000000000000000000003684 117.0
YYD3_k127_4958835_2 - - - - 0.000000000000000002685 87.0
YYD3_k127_4960401_0 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 537.0
YYD3_k127_4967217_0 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 483.0
YYD3_k127_4989337_0 all-trans-retinol 13,14-reductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 595.0
YYD3_k127_4989337_1 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 587.0
YYD3_k127_4989337_10 nuclease - - - 0.000000000000000000001228 108.0
YYD3_k127_4989337_11 Roadblock/LC7 domain - - - 0.0000000000001047 79.0
YYD3_k127_4989337_12 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000001694 61.0
YYD3_k127_4989337_13 Helix-turn-helix XRE-family like proteins - - - 0.0008285 47.0
YYD3_k127_4989337_2 cell shape determining protein MreB K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009617 509.0
YYD3_k127_4989337_3 Threonine dehydratase K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 409.0
YYD3_k127_4989337_4 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 317.0
YYD3_k127_4989337_5 eRF1 domain 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 304.0
YYD3_k127_4989337_6 Alpha-tubulin suppressor and related RCC1 domain-containing proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002804 306.0
YYD3_k127_4989337_7 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001824 290.0
YYD3_k127_4989337_8 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000000000000000000000000000000000003196 223.0
YYD3_k127_4989337_9 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000205 194.0
YYD3_k127_5013461_0 phosphorylase K00688 - 2.4.1.1 5.888e-251 793.0
YYD3_k127_5013461_1 Elongation factor G, domain IV K02355 - - 1.509e-227 726.0
YYD3_k127_5013461_2 - - - - 0.000000000000000000000000000000000000000000000000000000009219 211.0
YYD3_k127_5013461_3 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000001403 199.0
YYD3_k127_5013461_4 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000009408 206.0
YYD3_k127_5013461_5 PFAM CAAX amino terminal protease family - - - 0.000000000000000000000000000000000000000000000103 178.0
YYD3_k127_5013461_6 - - - - 0.00000000000000000000000001006 119.0
YYD3_k127_5013461_8 Domain of unknown function (DUF4384) - - - 0.000007993 53.0
YYD3_k127_50137_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003996 504.0
YYD3_k127_50137_1 Proton-conducting membrane transporter K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 421.0
YYD3_k127_50137_2 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008868 288.0
YYD3_k127_50137_3 Radical SAM superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006952 254.0
YYD3_k127_50137_4 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000004941 229.0
YYD3_k127_50137_5 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.00000005122 56.0
YYD3_k127_5047902_0 transporter K03319 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 441.0
YYD3_k127_5047902_1 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 395.0
YYD3_k127_5047902_2 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 344.0
YYD3_k127_5047902_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000009648 205.0
YYD3_k127_5047902_4 EVE domain - - - 0.0000000000000000000000000000000000000000000000002777 179.0
YYD3_k127_5047902_5 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000003612 172.0
YYD3_k127_5047902_6 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000002052 143.0
YYD3_k127_5047902_7 lactoylglutathione lyase activity K00941,K01724,K01759,K07032,K08234 - 2.7.1.49,2.7.4.7,4.2.1.96,4.4.1.5 0.00000000000000000000002872 103.0
YYD3_k127_507553_0 Peptidase family M3 K01284 - 3.4.15.5 0.0 1073.0
YYD3_k127_507553_1 hydrolase family 92 - - - 2.052e-314 990.0
YYD3_k127_507553_10 - - - - 0.000000000000008691 83.0
YYD3_k127_507553_12 - - - - 0.00000006764 59.0
YYD3_k127_507553_13 - - - - 0.00008235 46.0
YYD3_k127_507553_2 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 575.0
YYD3_k127_507553_3 peptidase S8 and S53, subtilisin, kexin, sedolisin K20754 - 3.4.21.111 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 390.0
YYD3_k127_507553_4 serine-type peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 381.0
YYD3_k127_507553_5 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 336.0
YYD3_k127_507553_6 PFAM periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 299.0
YYD3_k127_507553_7 Belongs to the BI1 family K06890,K19416 - - 0.00000000000000000000000000000000000000000000000000000000005183 212.0
YYD3_k127_507553_8 RNA recognition motif - - - 0.00000000000000000000000000000000001788 139.0
YYD3_k127_507553_9 YacP-like NYN domain K06962 - - 0.000000000000000001063 91.0
YYD3_k127_5101907_0 Phospholipid methyltransferase - - - 0.000000000000000000000000000000000000000000002563 169.0
YYD3_k127_5101907_1 Protein of unknown function (DUF3465) - - - 0.000000000000000000000000000000000000000002642 156.0
YYD3_k127_5101907_2 Protein of unknown function (DUF1569) - - - 0.000000000000000000000000002261 117.0
YYD3_k127_5101907_3 - - - - 0.00000002838 57.0
YYD3_k127_5143215_0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0042866,GO:0043436,GO:0043891,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008476 468.0
YYD3_k127_5143215_1 Phosphoglycerate kinase K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005479 437.0
YYD3_k127_5143215_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 295.0
YYD3_k127_5143215_3 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002277 281.0
YYD3_k127_5143215_4 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000002129 243.0
YYD3_k127_5143215_5 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000001848 225.0
YYD3_k127_5143215_6 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000007947 181.0
YYD3_k127_5143215_7 Preprotein translocase SecG subunit K03075 - - 0.0000004604 56.0
YYD3_k127_5148667_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.562e-219 692.0
YYD3_k127_5148667_1 Belongs to the aldehyde dehydrogenase family K00141,K22187 - 1.2.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 608.0
YYD3_k127_5148667_10 Cytidylyltransferase K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000504 227.0
YYD3_k127_5148667_11 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000001274 239.0
YYD3_k127_5148667_12 Bacteriocin-protection protein - - - 0.00000000000000000000000000000000000000000000000000000000000122 215.0
YYD3_k127_5148667_13 -acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000003892 196.0
YYD3_k127_5148667_14 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000000001721 185.0
YYD3_k127_5148667_15 - - - - 0.0000000000000000000000000000000000000000000002095 171.0
YYD3_k127_5148667_16 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000009513 175.0
YYD3_k127_5148667_17 cheY-homologous receiver domain K11443 - - 0.00000000000000000000000002217 115.0
YYD3_k127_5148667_18 Peptidase M56 - - - 0.0000000000000000000000004602 116.0
YYD3_k127_5148667_19 - - - - 0.000000000000000000009296 95.0
YYD3_k127_5148667_2 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 452.0
YYD3_k127_5148667_20 - - - - 0.000000000000000000009749 98.0
YYD3_k127_5148667_21 domain protein K14194 - - 0.0000000000002249 83.0
YYD3_k127_5148667_22 PA domain - - - 0.0000002697 63.0
YYD3_k127_5148667_23 - - - - 0.0000114 47.0
YYD3_k127_5148667_24 domain protein - - - 0.0002778 52.0
YYD3_k127_5148667_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 407.0
YYD3_k127_5148667_4 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 337.0
YYD3_k127_5148667_5 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004766 322.0
YYD3_k127_5148667_6 PFAM cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 306.0
YYD3_k127_5148667_7 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 297.0
YYD3_k127_5148667_8 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000003889 253.0
YYD3_k127_5148667_9 iron-sulfur cluster biosynthesis transcriptional regulator SufR K09012 - - 0.00000000000000000000000000000000000000000000000000000000000000003078 230.0
YYD3_k127_5151355_0 dTDP biosynthetic process K00560,K00943,K01585 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.1.1.45,2.7.4.9,4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 323.0
YYD3_k127_5151355_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 327.0
YYD3_k127_5151355_2 dTDP biosynthetic process K00943,K01585 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.9,4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000003613 255.0
YYD3_k127_5151355_3 Putative esterase K07017 - - 0.00000000000000000000000000000000000000000000000000000000000000001056 244.0
YYD3_k127_5151355_4 phosphohistidine phosphatase K08296 - - 0.00000000000000000000000000000000003014 139.0
YYD3_k127_5164916_0 amino acid - - - 9.375e-261 818.0
YYD3_k127_5164916_1 amino acid - - - 1.838e-254 800.0
YYD3_k127_5164916_10 Probable zinc-ribbon domain - - - 0.0000000000000000000000000000006359 125.0
YYD3_k127_5164916_11 - - - - 0.00000000000001212 84.0
YYD3_k127_5164916_2 Sugar (and other) transporter - - - 9.564e-221 692.0
YYD3_k127_5164916_3 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 559.0
YYD3_k127_5164916_4 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 469.0
YYD3_k127_5164916_5 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 437.0
YYD3_k127_5164916_6 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 400.0
YYD3_k127_5164916_7 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 365.0
YYD3_k127_5164916_8 serine-type endopeptidase activity - - - 0.000000000000000000000000000000000000000000004329 175.0
YYD3_k127_5164916_9 PspA/IM30 family K03969 - - 0.0000000000000000000000000000000000000002022 159.0
YYD3_k127_5171059_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 614.0
YYD3_k127_5171059_1 COG3119 Arylsulfatase A and related enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 547.0
YYD3_k127_5171059_10 Lipid A 3-O-deacylase (PagL) - - - 0.0002425 44.0
YYD3_k127_5171059_2 Sulfotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007781 268.0
YYD3_k127_5171059_3 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000000001601 210.0
YYD3_k127_5171059_4 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000001586 194.0
YYD3_k127_5171059_5 - - - - 0.00000000000000000000000000000000000000000001527 177.0
YYD3_k127_5171059_6 Belongs to the glycosyl hydrolase 43 family - - - 0.00000000000000000000000000000000802 147.0
YYD3_k127_5171059_7 peroxiredoxin activity K03564 - 1.11.1.15 0.0000000000000002346 82.0
YYD3_k127_5171059_8 Redoxin K03564 - 1.11.1.15 0.000000000512 64.0
YYD3_k127_5171059_9 PFAM NHL repeat containing protein K13735 - - 0.00007782 54.0
YYD3_k127_5171353_0 Carboxyl transferase domain - - - 2.327e-234 739.0
YYD3_k127_5171353_1 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 478.0
YYD3_k127_5171353_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009169 349.0
YYD3_k127_5171353_3 PFAM Metallophosphoesterase K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 291.0
YYD3_k127_5171353_4 Zn peptidase - - - 0.000000000000000000000000000000000000000000000000000000001571 217.0
YYD3_k127_5171353_5 tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000001038 178.0
YYD3_k127_5171353_6 PFAM thioesterase superfamily K07107 - - 0.00000000000000000000000000000000000005771 149.0
YYD3_k127_5171353_7 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000005369 71.0
YYD3_k127_5181530_0 Vitamin B12 dependent methionine synthase, activation domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0 1120.0
YYD3_k127_5181530_1 PFAM aminotransferase, class I K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 387.0
YYD3_k127_5181530_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000007219 209.0
YYD3_k127_5181530_3 Gram-negative bacterial TonB protein C-terminal - - - 0.0000000000007238 78.0
YYD3_k127_5191692_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 1.247e-233 739.0
YYD3_k127_5191692_1 glutamine synthetase K01915 GO:0001968,GO:0003674,GO:0003824,GO:0004356,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006541,GO:0006542,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009405,GO:0009605,GO:0009607,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016020,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019222,GO:0019752,GO:0019899,GO:0020012,GO:0030162,GO:0030312,GO:0030682,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0035375,GO:0040007,GO:0043207,GO:0043436,GO:0044044,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046394,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0070613,GO:0071704,GO:0071944,GO:0075136,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1903317,GO:1903319 6.3.1.2 2.277e-209 660.0
YYD3_k127_5191692_10 diguanylate cyclase - - - 0.000000000000000000000007304 115.0
YYD3_k127_5191692_2 threonine synthase activity K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 451.0
YYD3_k127_5191692_3 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004659 359.0
YYD3_k127_5191692_4 pfam abc K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 308.0
YYD3_k127_5191692_5 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 334.0
YYD3_k127_5191692_6 Deoxyhypusine synthase K00809 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009987,GO:0010467,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019538,GO:0034038,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001083 287.0
YYD3_k127_5191692_7 ABC-type Fe3 transport system permease component K02011 - - 0.00000000000000000000000000000000000000000000000000000000468 209.0
YYD3_k127_5191692_8 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000002316 162.0
YYD3_k127_5191692_9 type I phosphodiesterase nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000006861 149.0
YYD3_k127_5194184_0 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 580.0
YYD3_k127_5194184_1 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 531.0
YYD3_k127_5194184_10 Seven times multi-haem cytochrome CxxCH - - - 0.0003117 53.0
YYD3_k127_5194184_11 Class III cytochrome C family - - - 0.0003385 50.0
YYD3_k127_5194184_2 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 463.0
YYD3_k127_5194184_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 432.0
YYD3_k127_5194184_4 Cytochrome c554 and c-prime K03620 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 411.0
YYD3_k127_5194184_5 cytochrome c nitrite reductase K15876 - - 0.000000000000000000000000000000000000000000000000000000000344 206.0
YYD3_k127_5194184_6 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.0000000000000000000000000000000000000000000000000001358 190.0
YYD3_k127_5194184_7 - - - - 0.000000000000000000000000007412 121.0
YYD3_k127_5194184_8 12 heme-binding sites - - - 0.0000000000000000008554 96.0
YYD3_k127_5194184_9 Cytochrome c - - - 0.000164 49.0
YYD3_k127_5195913_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 0.0 1076.0
YYD3_k127_5195913_1 Alginate lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002297 247.0
YYD3_k127_5212678_0 TPR repeat - - - 0.00000000005989 74.0
YYD3_k127_5212678_1 Carboxypeptidase regulatory-like domain - - - 0.0000000001507 66.0
YYD3_k127_5218259_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 4.875e-194 614.0
YYD3_k127_5218259_1 COGs COG1253 Hemolysins and related protein containing CBS domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 321.0
YYD3_k127_5218259_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001593 295.0
YYD3_k127_5218259_3 CarD-like/TRCF domain K07736 - - 0.00000000000000000000000000000000000002927 151.0
YYD3_k127_5218259_4 HD domain - - - 0.000000000000000000000000005453 111.0
YYD3_k127_5218259_5 domain protein - - - 0.00000000000000000000000217 119.0
YYD3_k127_5218259_6 domain protein - - - 0.000000000007241 78.0
YYD3_k127_5218259_7 beta-1,4-mannooligosaccharide phosphorylase - - - 0.0005817 44.0
YYD3_k127_5220480_0 Carboxypeptidase regulatory-like domain - - - 3.613e-236 767.0
YYD3_k127_5220480_1 Carboxypeptidase regulatory-like domain - - - 2.776e-235 765.0
YYD3_k127_5220480_10 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 332.0
YYD3_k127_5220480_11 PFAM Alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005023 308.0
YYD3_k127_5220480_12 Formyl transferase K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000003264 240.0
YYD3_k127_5220480_13 Metallo-beta-lactamase superfamily K02238 - - 0.000000000000000000000000000000000000000000000001507 190.0
YYD3_k127_5220480_14 RDD family - - - 0.000000000000000000000000000000000000000007065 164.0
YYD3_k127_5220480_15 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000000000000000000000004237 153.0
YYD3_k127_5220480_16 Cytochrome c K00406,K08906 - - 0.00000000005405 67.0
YYD3_k127_5220480_17 Belongs to the ompA family - - - 0.0006407 49.0
YYD3_k127_5220480_2 Glutamine amidotransferases class-II K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005591 561.0
YYD3_k127_5220480_3 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004767 543.0
YYD3_k127_5220480_4 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 471.0
YYD3_k127_5220480_5 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 466.0
YYD3_k127_5220480_6 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 432.0
YYD3_k127_5220480_7 e3 binding domain K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 422.0
YYD3_k127_5220480_8 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 410.0
YYD3_k127_5220480_9 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008113 356.0
YYD3_k127_5220965_0 carboxylic acid catabolic process K01187 - 3.2.1.20 6.09e-254 801.0
YYD3_k127_5220965_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.243e-204 644.0
YYD3_k127_5220965_2 Arginase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002729 284.0
YYD3_k127_5220965_3 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000001241 186.0
YYD3_k127_5220965_4 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000001041 146.0
YYD3_k127_5220965_5 Protein of unknown function (DUF1326) - - - 0.0000000000000000000000000000000005571 140.0
YYD3_k127_5220965_6 - - - - 0.000000001744 68.0
YYD3_k127_5220965_7 Cytochrome b/b6/petB K00412,K03888 - - 0.0000001934 62.0
YYD3_k127_5220965_8 nitrite reductase K15864 - 1.7.2.1,1.7.99.1 0.0003158 49.0
YYD3_k127_5220965_9 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0005016 42.0
YYD3_k127_5230540_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 501.0
YYD3_k127_5230540_1 Lysin motif - - - 0.00000000000000000000000000000000000000000000000000000000005172 215.0
YYD3_k127_5230540_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000001728 208.0
YYD3_k127_5230540_3 Alpha/beta hydrolase family K07020 - - 0.00000000000000000000000000000000000000000009579 168.0
YYD3_k127_5230540_4 arsenate reductase (glutaredoxin) activity K00537 - 1.20.4.1 0.0000000000000000000000000000002449 125.0
YYD3_k127_5230540_5 TIGRFAM TonB K03832 - - 0.0000001095 62.0
YYD3_k127_5242868_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1651.0
YYD3_k127_5242868_1 PFAM Xylulose 5-phosphate Fructose 6-phosphate phosphoketolase, N-terminal K01621 GO:0003674,GO:0003824,GO:0008150,GO:0009758 4.1.2.22,4.1.2.9 0.0 1378.0
YYD3_k127_5242868_10 HlyD family secretion protein K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 311.0
YYD3_k127_5242868_11 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005455 300.0
YYD3_k127_5242868_13 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001174 284.0
YYD3_k127_5242868_14 Possible lysine decarboxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008636 269.0
YYD3_k127_5242868_15 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000004121 222.0
YYD3_k127_5242868_16 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000000003554 200.0
YYD3_k127_5242868_17 Ion channel - - - 0.000000002589 62.0
YYD3_k127_5242868_18 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000001333 61.0
YYD3_k127_5242868_19 - - - - 0.00002287 46.0
YYD3_k127_5242868_2 Hydrophobe Amphiphile Efflux-1 (HAE1) Family K03296,K18138 - - 0.0 1285.0
YYD3_k127_5242868_3 Carboxypeptidase regulatory-like domain - - - 7.206e-268 857.0
YYD3_k127_5242868_4 Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 517.0
YYD3_k127_5242868_5 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 495.0
YYD3_k127_5242868_6 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 426.0
YYD3_k127_5242868_7 transcription factor binding K15836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000924 421.0
YYD3_k127_5242868_8 Sodium calcium exchanger membrane K07300 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 389.0
YYD3_k127_5242868_9 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006186 308.0
YYD3_k127_5242942_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 560.0
YYD3_k127_5242942_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008655 536.0
YYD3_k127_5242942_2 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003629 498.0
YYD3_k127_5242942_3 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 343.0
YYD3_k127_5242942_4 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 329.0
YYD3_k127_5242942_5 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 327.0
YYD3_k127_5242942_6 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008462 302.0
YYD3_k127_5242942_7 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000004556 226.0
YYD3_k127_5242942_8 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000003383 186.0
YYD3_k127_5242942_9 - - - - 0.00000004148 62.0
YYD3_k127_5243194_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.514e-215 683.0
YYD3_k127_5243194_1 HELICc2 K03722 - 3.6.4.12 4.892e-197 633.0
YYD3_k127_5243194_10 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 306.0
YYD3_k127_5243194_11 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 304.0
YYD3_k127_5243194_12 AIR carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002346 284.0
YYD3_k127_5243194_13 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003662 283.0
YYD3_k127_5243194_14 peptidyl-tyrosine sulfation K03217,K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003728 273.0
YYD3_k127_5243194_15 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000002368 227.0
YYD3_k127_5243194_16 - - - - 0.00000000000000000000000000000000000000000000000000008001 196.0
YYD3_k127_5243194_17 Lecithin:cholesterol acyltransferase - - - 0.000000000000000000000000000000000000000000000000002268 200.0
YYD3_k127_5243194_18 - - - - 0.00000000000000000000000000000000000000000000000002878 195.0
YYD3_k127_5243194_19 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000002721 177.0
YYD3_k127_5243194_2 PFAM Zinc carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 627.0
YYD3_k127_5243194_20 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000003149 160.0
YYD3_k127_5243194_21 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000007694 147.0
YYD3_k127_5243194_22 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000003134 136.0
YYD3_k127_5243194_23 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000004474 134.0
YYD3_k127_5243194_24 von Willebrand factor, type A - - - 0.000000000000000000000000001977 126.0
YYD3_k127_5243194_25 Response regulator, receiver K11443 - - 0.000000000000000000000000002618 116.0
YYD3_k127_5243194_26 Acyltransferase family - - - 0.000000000000000000000000003556 125.0
YYD3_k127_5243194_27 Pfam:N_methyl_2 - - - 0.00000000000000007096 86.0
YYD3_k127_5243194_28 Pfam:N_methyl_2 - - - 0.000000000000003467 85.0
YYD3_k127_5243194_29 PFAM Methyltransferase - - - 0.000000000000004546 85.0
YYD3_k127_5243194_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 556.0
YYD3_k127_5243194_30 efflux transmembrane transporter activity - - - 0.000004795 54.0
YYD3_k127_5243194_31 His Kinase A (phosphoacceptor) domain - - - 0.0002042 51.0
YYD3_k127_5243194_4 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 471.0
YYD3_k127_5243194_5 phosphorelay signal transduction system K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 417.0
YYD3_k127_5243194_6 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 399.0
YYD3_k127_5243194_7 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151 379.0
YYD3_k127_5243194_8 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K07083,K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 342.0
YYD3_k127_5243194_9 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 322.0
YYD3_k127_5247119_0 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000011 296.0
YYD3_k127_5247119_1 Single Cache domain 2 K02480 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000001042 226.0
YYD3_k127_5247119_2 YCII-related domain - - - 0.000000000000000000000000000000000000000003742 158.0
YYD3_k127_5248288_0 RmlD substrate binding domain K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000971 434.0
YYD3_k127_5248288_1 Wzt C-terminal domain K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 397.0
YYD3_k127_5248288_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001405 244.0
YYD3_k127_5248288_3 methyltransferase K18827 - 2.1.1.294,2.7.1.181 0.00000000000000000000000000000000000000000000000000000000000000263 237.0
YYD3_k127_5282474_0 Uncharacterised ACR (DUF711) K09157 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 555.0
YYD3_k127_5282474_1 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 458.0
YYD3_k127_5282474_2 BMC - - - 0.0000000000000000000000000000000000001229 147.0
YYD3_k127_5282474_3 BMC domain - - - 0.00000000000000000000000000004453 119.0
YYD3_k127_5282474_4 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.00000000000000000000000004144 113.0
YYD3_k127_5282474_5 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.000000000000000000004591 93.0
YYD3_k127_5282474_6 Belongs to the UPF0237 family K07166 - - 0.0000000000000000002261 93.0
YYD3_k127_5289189_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 611.0
YYD3_k127_5300782_0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 432.0
YYD3_k127_5300782_1 chlorophyll binding - - - 0.0000000000000000000000000000000000000005386 161.0
YYD3_k127_5300782_2 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000000000341 144.0
YYD3_k127_5306141_0 Asparagine synthase K01953 - 6.3.5.4 8.154e-196 627.0
YYD3_k127_5306141_1 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 323.0
YYD3_k127_5306141_2 DNA topoisomerase VI subunit A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 295.0
YYD3_k127_5306141_3 Cupin 2, conserved barrel domain protein - - - 0.000003592 52.0
YYD3_k127_5307312_0 PFAM Major Facilitator Superfamily K08191 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 591.0
YYD3_k127_5307312_1 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 573.0
YYD3_k127_5307312_2 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 501.0
YYD3_k127_5307312_3 D-galactarate dehydratase Altronate K01685,K01708 - 4.2.1.42,4.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 384.0
YYD3_k127_5307312_4 enzyme involved in inositol metabolism K03337 - 5.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006124 364.0
YYD3_k127_5307312_5 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 354.0
YYD3_k127_5307312_6 PFAM Short-chain dehydrogenase reductase SDR K00065 - 1.1.1.127 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 315.0
YYD3_k127_5307312_7 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001335 285.0
YYD3_k127_5307312_8 PFAM KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000000000003231 250.0
YYD3_k127_5307312_9 Cupin 2, conserved barrel domain protein - - - 0.00000000000000009918 85.0
YYD3_k127_5338951_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 8.671e-199 629.0
YYD3_k127_5338951_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008058 531.0
YYD3_k127_5338951_10 PFAM Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000003598 199.0
YYD3_k127_5338951_11 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000007517 181.0
YYD3_k127_5338951_12 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000543 177.0
YYD3_k127_5338951_13 Rossmann-like domain - - - 0.0000000000000000000000000000000000000000001478 170.0
YYD3_k127_5338951_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006874 337.0
YYD3_k127_5338951_3 Bacillithiol biosynthesis BshC K22136 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 329.0
YYD3_k127_5338951_4 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004814 271.0
YYD3_k127_5338951_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0001871,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005623,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0019538,GO:0030246,GO:0030247,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006812 272.0
YYD3_k127_5338951_6 Belongs to the DapA family K01714,K22397 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005975,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019520,GO:0019752,GO:0032787,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046176,GO:0046395,GO:0047440,GO:0071704,GO:0072329,GO:1901575 4.1.2.28,4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000004319 268.0
YYD3_k127_5338951_7 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001166 269.0
YYD3_k127_5338951_8 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000003886 257.0
YYD3_k127_5338951_9 isomerase activity K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000000000000002829 233.0
YYD3_k127_5372603_0 PFAM Glycoside hydrolase, family 2, TIM barrel K01190 - 3.2.1.23 7.601e-266 833.0
YYD3_k127_5372603_1 Domain of unknown function (DUF4982) K01190 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336 458.0
YYD3_k127_5415250_0 Elongation factor G, domain IV K02355 - - 9.507e-285 890.0
YYD3_k127_5415250_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000000000000000000000001298 146.0
YYD3_k127_5428529_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004256 604.0
YYD3_k127_5428529_1 Involved in the tonB-independent uptake of proteins K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 509.0
YYD3_k127_5428529_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000008107 147.0
YYD3_k127_5428529_3 Carboxypeptidase regulatory-like domain - - - 0.00006006 55.0
YYD3_k127_5430241_0 Kelch motif - - - 0.000000000000000000000000000000000001731 160.0
YYD3_k127_5430241_1 Leucine-rich repeat (LRR) protein - - - 0.0000000000000000000003382 113.0
YYD3_k127_5430241_2 Sigma-54 interaction domain K07714 - - 0.000000000001769 74.0
YYD3_k127_5430241_3 domain, Protein - - - 0.00000000003937 77.0
YYD3_k127_5432311_0 efflux transmembrane transporter activity - - - 1.459e-229 736.0
YYD3_k127_5432311_1 serine threonine protein kinase K12132 - 2.7.11.1 2.156e-207 679.0
YYD3_k127_5432311_10 oxygen carrier activity K07216 - - 0.000000000449 66.0
YYD3_k127_5432311_11 self proteolysis - - - 0.0002518 51.0
YYD3_k127_5432311_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 373.0
YYD3_k127_5432311_4 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 332.0
YYD3_k127_5432311_5 von Willebrand factor type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002366 311.0
YYD3_k127_5432311_6 Succinylglutamate desuccinylase / Aspartoacylase family K05526 - 3.5.1.96 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008697 278.0
YYD3_k127_5432311_7 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000004442 146.0
YYD3_k127_5432311_8 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000004096 109.0
YYD3_k127_5432311_9 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000009311 87.0
YYD3_k127_5445306_0 Belongs to the mandelate racemase muconate lactonizing enzyme family K01706 - 4.2.1.40 3.315e-227 708.0
YYD3_k127_5445306_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 624.0
YYD3_k127_5445306_10 Polysaccharide lyase family 4, domain III - - - 0.000000000000000000000000000000000000000000000003624 198.0
YYD3_k127_5445306_11 Hydroxypyruvate reductase K11529 - 2.7.1.165 0.00001975 47.0
YYD3_k127_5445306_2 Glycogen debranching enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004288 574.0
YYD3_k127_5445306_3 ROK family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005111 432.0
YYD3_k127_5445306_4 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006494 376.0
YYD3_k127_5445306_5 Sodium:solute symporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008594 370.0
YYD3_k127_5445306_6 KR domain K00059,K18335 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 293.0
YYD3_k127_5445306_7 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002781 263.0
YYD3_k127_5445306_8 Esterase - - - 0.00000000000000000000000000000000000000000000000001439 191.0
YYD3_k127_5445306_9 ABC-type sugar transport system periplasmic component K10439 - - 0.00000000000000000000000000000000000000000000000009371 191.0
YYD3_k127_5471080_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 576.0
YYD3_k127_5471080_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 523.0
YYD3_k127_5471080_10 Peptidase M28 - - - 0.000000000000000000000000000000000000000000000000000000000000002767 228.0
YYD3_k127_5471080_11 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000001678 131.0
YYD3_k127_5471080_12 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.00000000000000000000000004191 115.0
YYD3_k127_5471080_13 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 0.0000001155 56.0
YYD3_k127_5471080_14 - - - - 0.0000003128 61.0
YYD3_k127_5471080_2 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000609 457.0
YYD3_k127_5471080_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008801 328.0
YYD3_k127_5471080_4 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 326.0
YYD3_k127_5471080_5 PFAM Glutamine cyclotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 301.0
YYD3_k127_5471080_6 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003928 277.0
YYD3_k127_5471080_7 Transglutaminase-like superfamily K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000456 266.0
YYD3_k127_5471080_8 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001179 246.0
YYD3_k127_5471080_9 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000009467 234.0
YYD3_k127_5480200_0 serine-type endopeptidase activity K14645,K20276 - - 0.000000000000000000000000000000002286 138.0
YYD3_k127_5480200_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000004135 103.0
YYD3_k127_5480200_3 cellulase activity - - - 0.000000000000000000001055 102.0
YYD3_k127_5480200_4 serine-type endopeptidase activity K04771,K07126 - 3.4.21.107 0.00005483 53.0
YYD3_k127_5480200_5 Sugar (and other) transporter - - - 0.0004512 44.0
YYD3_k127_5483337_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.0 1266.0
YYD3_k127_5483337_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 575.0
YYD3_k127_5483337_10 Domain of unknown function (DUF1990) - - - 0.000000000000000000000000000000000000000000000000000001653 200.0
YYD3_k127_5483337_11 FecR protein - - - 0.0000000000000000000000000000000000000000000000000001164 211.0
YYD3_k127_5483337_12 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000000000021 174.0
YYD3_k127_5483337_13 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000004779 148.0
YYD3_k127_5483337_14 DNA-binding transcription factor activity - - - 0.00000000000000000000000000000000000006387 148.0
YYD3_k127_5483337_15 Phosphoglycerate mutase family - - - 0.0000000000000000000001505 104.0
YYD3_k127_5483337_16 Redoxin - - - 0.000000000000000000003367 99.0
YYD3_k127_5483337_17 PFAM Amidase - - - 0.0000000005132 65.0
YYD3_k127_5483337_2 PFAM D12 class N6 adenine-specific DNA methyltransferase K07318 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 527.0
YYD3_k127_5483337_3 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006159 407.0
YYD3_k127_5483337_4 PFAM TonB-dependent Receptor Plug - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 404.0
YYD3_k127_5483337_5 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005351 367.0
YYD3_k127_5483337_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 297.0
YYD3_k127_5483337_7 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004258 285.0
YYD3_k127_5483337_8 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006868 267.0
YYD3_k127_5483337_9 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000002637 206.0
YYD3_k127_5483563_0 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009566 351.0
YYD3_k127_5483563_1 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 334.0
YYD3_k127_5483563_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 334.0
YYD3_k127_5483563_3 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009122 291.0
YYD3_k127_5483563_4 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007613 290.0
YYD3_k127_5483563_5 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000000000000006334 203.0
YYD3_k127_5483563_6 PFAM Forkhead-associated protein - - - 0.000000000000000000000009752 108.0
YYD3_k127_5492678_0 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 509.0
YYD3_k127_5492678_1 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 485.0
YYD3_k127_5492678_10 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.0000005593 55.0
YYD3_k127_5492678_11 Tetratricopeptide repeat - - - 0.0003459 53.0
YYD3_k127_5492678_2 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 471.0
YYD3_k127_5492678_3 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000883 386.0
YYD3_k127_5492678_4 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 290.0
YYD3_k127_5492678_5 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003979 269.0
YYD3_k127_5492678_6 ABC-type molybdate transport system, permease component K02018 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000002831 230.0
YYD3_k127_5492678_7 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000001767 170.0
YYD3_k127_5492678_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000001194 139.0
YYD3_k127_5492678_9 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000001375 126.0
YYD3_k127_5495413_0 Forkhead associated domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 336.0
YYD3_k127_5495413_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001899 274.0
YYD3_k127_5495413_2 Serine Threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000003223 216.0
YYD3_k127_5495413_3 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.00000000000000000000000000000000000000000000005396 173.0
YYD3_k127_5495413_4 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000004811 141.0
YYD3_k127_5495413_5 Histidine kinase - - - 0.0000000000000000000000009978 108.0
YYD3_k127_5495413_6 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000003363 80.0
YYD3_k127_5495413_7 helix_turn_helix, Lux Regulon K07695 GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0009405,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0018995,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0022611,GO:0030312,GO:0030430,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032502,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0036293,GO:0043656,GO:0043657,GO:0044174,GO:0044215,GO:0044216,GO:0044217,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070482,GO:0071944,GO:0072493,GO:0080090,GO:0080134,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1902882,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000001469 74.0
YYD3_k127_5506642_0 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000000005793 230.0
YYD3_k127_5506642_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000634 225.0
YYD3_k127_5506642_2 - - - - 0.000000000000000000000000000000000000000000000002717 187.0
YYD3_k127_5506642_3 Tetratricopeptide repeat - - - 0.000000000003996 75.0
YYD3_k127_5506642_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00008669 54.0
YYD3_k127_5540338_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 345.0
YYD3_k127_5540338_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007018 250.0
YYD3_k127_5540338_10 PFAM Hemerythrin HHE cation binding domain protein K07216 - - 0.00000000125 64.0
YYD3_k127_5540338_11 Protein kinase domain K12132 - 2.7.11.1 0.0000002658 62.0
YYD3_k127_5540338_12 MacB-like periplasmic core domain - - - 0.0005401 43.0
YYD3_k127_5540338_2 metal-dependent membrane protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000003166 242.0
YYD3_k127_5540338_3 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000007595 203.0
YYD3_k127_5540338_4 Protein tyrosine kinase - - - 0.000000000000000000000000000000004207 133.0
YYD3_k127_5540338_5 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000007946 134.0
YYD3_k127_5540338_6 cAMP biosynthetic process - - - 0.00000000000000005251 85.0
YYD3_k127_5540338_7 TonB-dependent receptor - - - 0.00000000000001378 80.0
YYD3_k127_5540338_8 PBS lyase HEAT-like repeat - - - 0.00000000000136 76.0
YYD3_k127_5540338_9 Tetratricopeptide repeat - - - 0.0000000001759 63.0
YYD3_k127_5557679_0 TIGRFAM parallel beta-helix repeat (two copies) K07218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002998 325.0
YYD3_k127_5557679_1 ABC-2 family transporter protein K19341 - - 0.00000000000000000000000000000000000000000000000000000004335 206.0
YYD3_k127_5557679_2 lipoprotein involved in nitrous oxide reduction - - - 0.000000000000000000000000000000000000000000000000000004117 195.0
YYD3_k127_5557679_3 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000001794 182.0
YYD3_k127_5557679_4 AAA ATPase domain - - - 0.000000000000000000000001077 116.0
YYD3_k127_5557679_5 NosL K19342 - - 0.00000000000000000000001632 105.0
YYD3_k127_5574138_0 Multicopper oxidase - - - 0.0 1058.0
YYD3_k127_5574138_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007891 612.0
YYD3_k127_5574138_10 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 406.0
YYD3_k127_5574138_11 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191 402.0
YYD3_k127_5574138_12 Glycosyl hydrolases family 16 K01216 - 3.2.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 377.0
YYD3_k127_5574138_13 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 401.0
YYD3_k127_5574138_14 Putative glutamine amidotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 343.0
YYD3_k127_5574138_15 DNA methylAse K00571,K07316 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 319.0
YYD3_k127_5574138_16 esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001863 286.0
YYD3_k127_5574138_17 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004505 276.0
YYD3_k127_5574138_18 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004965 274.0
YYD3_k127_5574138_19 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000001029 258.0
YYD3_k127_5574138_2 NAD(P)-binding Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005101 544.0
YYD3_k127_5574138_20 Phosphotransferase enzyme family K17910 - 2.7.1.190 0.00000000000000000000000000000000000000000000000000000000000006222 223.0
YYD3_k127_5574138_21 - - - - 0.0000000000000000000000000000000000000000000000000000000000005625 230.0
YYD3_k127_5574138_22 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000003338 211.0
YYD3_k127_5574138_23 Peptidase C14 caspase catalytic subunit p20 - - - 0.000000000000000000000000000000000000000000000008072 185.0
YYD3_k127_5574138_24 Putative glycolipid-binding K09957 - - 0.0000000000000000000000000000000000000001546 157.0
YYD3_k127_5574138_25 S-adenosylmethionine decarboxylase K01611 - 4.1.1.50 0.00000000000000000000000000000001854 130.0
YYD3_k127_5574138_26 Putative glutamine amidotransferase - - - 0.00000000000000000000006869 104.0
YYD3_k127_5574138_27 hydroperoxide reductase activity - - - 0.0000000000000000000002755 99.0
YYD3_k127_5574138_28 Transglycosylase associated protein - - - 0.0000000000000000000007793 97.0
YYD3_k127_5574138_29 2Fe-2S iron-sulfur cluster binding domain K00302 - 1.5.3.1 0.0000000000000000003199 90.0
YYD3_k127_5574138_3 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 529.0
YYD3_k127_5574138_30 Domain of Unknown Function (DUF350) - - - 0.0000000000000000482 84.0
YYD3_k127_5574138_31 cellulose binding - - - 0.0000000000004662 70.0
YYD3_k127_5574138_33 Aerotolerance regulator N-terminal - - - 0.00000000291 61.0
YYD3_k127_5574138_34 - - - - 0.000001164 51.0
YYD3_k127_5574138_4 Domain of unknown function (DUF4178) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 505.0
YYD3_k127_5574138_5 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 472.0
YYD3_k127_5574138_6 Proline racemase K12658 - 5.1.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 435.0
YYD3_k127_5574138_7 FAD dependent oxidoreductase K00303,K21061 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 435.0
YYD3_k127_5574138_8 Dihydrodipicolinate synthetase family K21062 - 3.5.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 416.0
YYD3_k127_5574138_9 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 416.0
YYD3_k127_5597748_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 512.0
YYD3_k127_5597748_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 351.0
YYD3_k127_5597748_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000085 269.0
YYD3_k127_5597748_3 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000009147 124.0
YYD3_k127_5606687_0 Cytochrome c - - - 4.144e-246 767.0
YYD3_k127_5606687_1 iron assimilation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 595.0
YYD3_k127_5606687_2 - - - - 0.000000000000000000000000001328 112.0
YYD3_k127_5607699_0 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001194 273.0
YYD3_k127_5607699_1 Integrin alpha (beta-propellor repeats). - - - 0.000000000000000000000000000000000000000000000000000003352 210.0
YYD3_k127_5607699_2 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000002026 196.0
YYD3_k127_5607699_3 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000005094 174.0
YYD3_k127_5607699_5 Belongs to the TPP enzyme family K01637,K01652 - 2.2.1.6,4.1.3.1 0.000000000000000000000000005616 126.0
YYD3_k127_5607941_0 Serine threonine protein kinase K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000936 339.0
YYD3_k127_5607941_1 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002136 280.0
YYD3_k127_5607941_2 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000338 194.0
YYD3_k127_5607941_3 - - - - 0.000008409 48.0
YYD3_k127_5607941_4 ABC-Type Dipeptide Transport System Periplasmic Component K02035 - - 0.00003106 49.0
YYD3_k127_5608002_0 PFAM NHL repeat - - - 2.657e-204 656.0
YYD3_k127_5608002_1 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004228 501.0
YYD3_k127_5608002_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000001559 154.0
YYD3_k127_5610299_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 3.391e-221 705.0
YYD3_k127_5610299_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000007366 205.0
YYD3_k127_5610299_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000001806 156.0
YYD3_k127_5610299_3 Ribosomal protein L35 K02916 - - 0.000000000000000005171 85.0
YYD3_k127_5610299_4 phenylalanyl-tRNA synthetase alpha K01889 - 6.1.1.20 0.00012 49.0
YYD3_k127_5611345_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003597 344.0
YYD3_k127_5611345_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000000009292 216.0
YYD3_k127_5611345_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000001009 87.0
YYD3_k127_5657630_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 4.141e-296 924.0
YYD3_k127_5657630_1 catalase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009254 590.0
YYD3_k127_5657630_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007061 398.0
YYD3_k127_5657630_3 LVIVD repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 415.0
YYD3_k127_5657630_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003376 395.0
YYD3_k127_5657630_5 Thioredoxin-like - - - 0.000000000000001337 85.0
YYD3_k127_5677347_0 Sulfate permease family K01673,K03321 - 4.2.1.1 2.609e-200 638.0
YYD3_k127_5677347_1 Transcriptional regulator K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007532 303.0
YYD3_k127_5677347_2 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000009427 247.0
YYD3_k127_5677347_3 acylphosphatase activity K01512 - 3.6.1.7 0.0000000000000007041 80.0
YYD3_k127_5677347_4 Prokaryotic N-terminal methylation motif K02671 - - 0.0009159 48.0
YYD3_k127_5691708_0 Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure - - - 0.0000000000000000000000000000003547 125.0
YYD3_k127_5691708_1 Gas vesicle protein K - - - 0.0000000000000000000000000002137 118.0
YYD3_k127_5691708_2 Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth - - - 0.00000000000000000000000002606 112.0
YYD3_k127_5691708_3 Gas vesicle synthesis protein GvpL/GvpF - - - 0.0000000000000000000006176 103.0
YYD3_k127_5726785_0 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 301.0
YYD3_k127_5726785_1 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002795 273.0
YYD3_k127_5726785_2 - - - - 0.0000000000000000000000000001493 120.0
YYD3_k127_5740646_0 methyltransferase activity K00574,K12240,K18534,K19620,K20444 - 2.1.1.295,2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006444 494.0
YYD3_k127_5740646_1 DNA-binding response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 307.0
YYD3_k127_5768806_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 6.446e-224 706.0
YYD3_k127_5773983_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 555.0
YYD3_k127_5773983_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 465.0
YYD3_k127_5773983_2 Lysin motif K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006356 268.0
YYD3_k127_5773983_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000005803 216.0
YYD3_k127_5773983_5 Putative zinc-finger - - - 0.00002289 54.0
YYD3_k127_5779365_0 Family 5 K02035,K15580 - - 0.00000000000000000000000000000000000000000004371 187.0
YYD3_k127_5779365_1 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.00000000000000000000000000000000000000000005758 186.0
YYD3_k127_5779365_2 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000001134 162.0
YYD3_k127_5786124_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 428.0
YYD3_k127_5786124_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008657 402.0
YYD3_k127_5786124_2 G-rich domain on putative tyrosine kinase K16554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007368 304.0
YYD3_k127_5786124_3 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000001753 217.0
YYD3_k127_5786124_4 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000003736 172.0
YYD3_k127_5786124_5 TIGRFAM conserved repeat domain - - - 0.000003747 59.0
YYD3_k127_5795343_0 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000002741 243.0
YYD3_k127_5795343_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000391 234.0
YYD3_k127_5795343_2 Acyl-transferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000005182 196.0
YYD3_k127_5795343_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000007467 102.0
YYD3_k127_5795343_4 PFAM phosphate transporter K03306 - - 0.0000000000002844 74.0
YYD3_k127_5795343_5 Copper chaperone PCu(A)C K09796 - - 0.000000001291 61.0
YYD3_k127_5807555_0 DEAD/H associated K03724 - - 0.0 1124.0
YYD3_k127_5807555_1 metalloendopeptidase activity K01283 - 3.4.15.1 3.305e-252 791.0
YYD3_k127_5807555_10 Protein of unknown function (DUF2721) - - - 0.000000000000000000000000000001555 127.0
YYD3_k127_5807555_11 Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000006492 108.0
YYD3_k127_5807555_12 Cytochrome c - - - 0.00000000000000002695 89.0
YYD3_k127_5807555_13 - - - - 0.00004207 51.0
YYD3_k127_5807555_2 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 414.0
YYD3_k127_5807555_3 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 364.0
YYD3_k127_5807555_4 Homoserine dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007371 286.0
YYD3_k127_5807555_5 NADPH-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001151 259.0
YYD3_k127_5807555_6 Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000001665 257.0
YYD3_k127_5807555_7 helix_turn_helix gluconate operon transcriptional repressor K07978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000129 255.0
YYD3_k127_5807555_8 Xylose isomerase-like TIM barrel K06606 - 5.3.99.11 0.0000000000000000000000000000000000000000000000000000000000002036 221.0
YYD3_k127_5807555_9 metal cluster binding - - - 0.0000000000000000000000000000000000000003244 156.0
YYD3_k127_5837256_0 MacB-like periplasmic core domain - - - 2.678e-294 925.0
YYD3_k127_5837256_1 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 419.0
YYD3_k127_5837256_2 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 389.0
YYD3_k127_5837256_3 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 348.0
YYD3_k127_5837256_4 ABC transporter K01990,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 348.0
YYD3_k127_5837256_5 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 319.0
YYD3_k127_5837256_6 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000001512 231.0
YYD3_k127_5837256_7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.0000000000000000000000000000000000000000001078 161.0
YYD3_k127_5837256_8 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000005462 73.0
YYD3_k127_5837256_9 Beta/gamma crystallins - - - 0.0000000002126 64.0
YYD3_k127_583859_0 PFAM 4Fe-4S binding domain - - - 2.841e-198 626.0
YYD3_k127_583859_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 401.0
YYD3_k127_583859_10 antisigma factor binding K04749,K06378 - - 0.000001831 55.0
YYD3_k127_583859_11 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 - - 0.00006391 50.0
YYD3_k127_583859_2 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 313.0
YYD3_k127_583859_3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K17736 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002113 266.0
YYD3_k127_583859_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001435 227.0
YYD3_k127_583859_5 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000003437 235.0
YYD3_k127_583859_6 pyridine nucleotide-disulfide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000003405 229.0
YYD3_k127_583859_7 oxidoreductase - - - 0.00000000000000000000000000000000004649 152.0
YYD3_k127_583859_8 type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000007608 129.0
YYD3_k127_583859_9 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000000649 67.0
YYD3_k127_5844373_0 amino acid - - - 8.032e-261 818.0
YYD3_k127_5844373_1 Histidine kinase K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000199 328.0
YYD3_k127_5844373_2 response regulator, receiver K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 300.0
YYD3_k127_5844373_3 amino acid - - - 0.00000000000000000000000000000000000000000000001351 179.0
YYD3_k127_5844373_4 amino acid - - - 0.000000000000000000000000000000000001369 142.0
YYD3_k127_5844373_5 Phosphate transporter family K03306 - - 0.000000000008041 66.0
YYD3_k127_5848228_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009168 423.0
YYD3_k127_5848228_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003586 254.0
YYD3_k127_5848228_2 penicillin binding - - - 0.0000000000000000000000000000000000000000000000000002076 206.0
YYD3_k127_5848228_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000000000000000000000000000000000000000003985 174.0
YYD3_k127_5848228_4 Domain of unknown function (DUF4349) - - - 0.000000000000000000000000275 118.0
YYD3_k127_5848228_5 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000001603 101.0
YYD3_k127_5848228_6 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000000002832 94.0
YYD3_k127_5848228_7 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000001838 88.0
YYD3_k127_5848228_8 - K05826 - - 0.0000000001942 63.0
YYD3_k127_5848228_9 domain protein K14475 - - 0.00001879 54.0
YYD3_k127_5853308_0 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00239 GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0022900,GO:0044237,GO:0045333,GO:0055114 1.3.5.1,1.3.5.4 1.919e-270 841.0
YYD3_k127_5853308_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 463.0
YYD3_k127_5853308_2 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008618 340.0
YYD3_k127_5853308_3 PFAM SOUL heme-binding protein - - - 0.00000008818 64.0
YYD3_k127_5853928_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.236e-247 773.0
YYD3_k127_5853928_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 381.0
YYD3_k127_5853928_10 PA14 domain - - - 0.000000003769 61.0
YYD3_k127_5853928_2 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 313.0
YYD3_k127_5853928_3 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K13810 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 286.0
YYD3_k127_5853928_4 Domain of unknown function (DUF2437) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001234 271.0
YYD3_k127_5853928_5 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000003322 236.0
YYD3_k127_5853928_6 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000001372 138.0
YYD3_k127_5853928_7 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000459 137.0
YYD3_k127_5853928_8 Belongs to the UPF0374 family K07586 - - 0.0000000000000000006234 92.0
YYD3_k127_5853928_9 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000003376 92.0
YYD3_k127_5854871_0 Alpha/beta hydrolase family - - - 6.276e-292 909.0
YYD3_k127_5854871_1 Zinc-binding dehydrogenase K13979 - - 1.187e-203 639.0
YYD3_k127_5854871_10 PBS lyase HEAT-like repeat - - - 0.0000000000000000000002537 102.0
YYD3_k127_5854871_11 - - - - 0.000000000000008007 85.0
YYD3_k127_5854871_2 regulation of response to stimulus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 541.0
YYD3_k127_5854871_3 Involved in the tonB-independent uptake of proteins K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 529.0
YYD3_k127_5854871_4 alcohol dehydrogenase K00001,K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 501.0
YYD3_k127_5854871_5 acyl-CoA dehydrogenase K22027 - 1.14.13.235 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 481.0
YYD3_k127_5854871_6 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005119 447.0
YYD3_k127_5854871_7 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 316.0
YYD3_k127_5854871_8 alpha-ribazole phosphatase activity - - - 0.0000000000000000000000000000000000000000000000001003 183.0
YYD3_k127_5854871_9 Clostripain family - - - 0.0000000000000000000000000002217 132.0
YYD3_k127_5882301_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 447.0
YYD3_k127_5882301_1 FCD K05799 - - 0.00000000000000000000000000000007054 130.0
YYD3_k127_5898625_0 asparaginase K01424,K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.1,3.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 460.0
YYD3_k127_5898625_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 361.0
YYD3_k127_5898625_11 - - - - 0.0000000000000000000000000002006 123.0
YYD3_k127_5898625_12 DNA polymerase K02347 - - 0.000000000000000000000000006265 115.0
YYD3_k127_5898625_13 PFAM Forkhead-associated protein - - - 0.00000000000009136 79.0
YYD3_k127_5898625_14 RDD family - - - 0.0000000351 61.0
YYD3_k127_5898625_2 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 339.0
YYD3_k127_5898625_3 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006771 314.0
YYD3_k127_5898625_4 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001276 281.0
YYD3_k127_5898625_5 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000008668 254.0
YYD3_k127_5898625_6 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000003923 246.0
YYD3_k127_5898625_7 Pfam Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000003013 220.0
YYD3_k127_5898625_8 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000000000000006346 219.0
YYD3_k127_5898625_9 Glyoxalase-like domain K06996 - - 0.00000000000000000000000000000000000000000000000000000000001468 207.0
YYD3_k127_5898782_0 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 2.705e-194 619.0
YYD3_k127_5898782_1 DNA polymerase beta thumb K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006223 537.0
YYD3_k127_5898782_2 Adenylate and Guanylate cyclase catalytic domain - - - 0.00000002043 58.0
YYD3_k127_5933120_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 310.0
YYD3_k127_5933120_1 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001127 288.0
YYD3_k127_5933120_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000001789 230.0
YYD3_k127_5933120_3 histidine kinase A domain protein - - - 0.000000000000000000004837 100.0
YYD3_k127_5933120_4 - - - - 0.000000000000000003701 92.0
YYD3_k127_5937871_0 Protease prsW family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 308.0
YYD3_k127_5937871_1 Oxidoreductase activity. It is involved in the biological process described with metabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005381 288.0
YYD3_k127_5937871_10 TIGRFAM bacillithiol system protein YtxJ - - - 0.00003934 46.0
YYD3_k127_5937871_2 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.000000000000000000000000000000000000000000000000002419 191.0
YYD3_k127_5937871_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07291 - 2.7.8.34 0.00000000000000000000000000000000000000000000000003712 188.0
YYD3_k127_5937871_4 Protein of unknown function (DUF1572) - - - 0.000000000000000000000000000000000000006139 151.0
YYD3_k127_5937871_5 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000267 121.0
YYD3_k127_5937871_6 - - - - 0.00000000000000000000000003786 112.0
YYD3_k127_5937871_7 Protein of unknown function (DUF971) - - - 0.0000000000000000000000004693 107.0
YYD3_k127_5937871_8 Polysaccharide biosynthesis/export protein K01991 - - 0.00000000000000000000009109 111.0
YYD3_k127_5937871_9 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000003991 98.0
YYD3_k127_5967886_0 Tricorn protease C1 domain K08676 - - 0.0 1248.0
YYD3_k127_5967886_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 1.294e-224 711.0
YYD3_k127_5967886_10 DNA-binding transcription factor activity - - - 0.000000000000000000000000000000000000000000000003781 185.0
YYD3_k127_5967886_11 carboxylic acid catabolic process - - - 0.000000000000000000000000000000000000000000001094 177.0
YYD3_k127_5967886_12 A-macroglobulin receptor - - - 0.00000000000000000000000000000000000000000003157 187.0
YYD3_k127_5967886_13 - - - - 0.00000000000000000000000000000000000000001285 161.0
YYD3_k127_5967886_14 Carboxypeptidase regulatory-like domain - - - 0.000002011 62.0
YYD3_k127_5967886_2 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 567.0
YYD3_k127_5967886_3 Domain of unknown function (DUF3471) K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 541.0
YYD3_k127_5967886_4 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 544.0
YYD3_k127_5967886_5 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 392.0
YYD3_k127_5967886_6 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006017 350.0
YYD3_k127_5967886_7 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000008178 237.0
YYD3_k127_5967886_8 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000008557 219.0
YYD3_k127_5967886_9 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000004913 186.0
YYD3_k127_600796_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004795 319.0
YYD3_k127_600796_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000001994 225.0
YYD3_k127_6017615_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007165 420.0
YYD3_k127_6017615_1 Ferritin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003299 283.0
YYD3_k127_6017615_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000006229 175.0
YYD3_k127_6017615_3 membrane protein (homolog of Drosophila rhomboid) K19225 - 3.4.21.105 0.0000000000000000000000000000001235 140.0
YYD3_k127_601931_0 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000001139 122.0
YYD3_k127_601931_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000001393 93.0
YYD3_k127_605924_0 domain protein - - - 0.0 1080.0
YYD3_k127_605924_1 PFAM Glycosyl hydrolase family 3 C terminal domain - - - 6.225e-263 831.0
YYD3_k127_605924_10 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 419.0
YYD3_k127_605924_11 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 404.0
YYD3_k127_605924_12 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 377.0
YYD3_k127_605924_13 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 366.0
YYD3_k127_605924_14 YdjC-like protein K03478 - 3.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 302.0
YYD3_k127_605924_15 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006274 280.0
YYD3_k127_605924_16 TonB-dependent Receptor Plug - - - 0.000000000000000000000000000000000000000000000000000000000000000003084 248.0
YYD3_k127_605924_17 - - - - 0.000000000000000000000000000000000000000000000003714 196.0
YYD3_k127_605924_18 - - - - 0.000000000000000000000000000000000000005109 147.0
YYD3_k127_605924_19 hydroperoxide reductase activity K01607 - 4.1.1.44 0.00000000000000000000000000000000001578 136.0
YYD3_k127_605924_2 Putative carbohydrate binding domain K12373 - 3.2.1.52 8.778e-242 764.0
YYD3_k127_605924_20 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000001608 138.0
YYD3_k127_605924_21 MbtH-like protein K05375,K09190 - - 0.0000000000000000000000000000000004646 134.0
YYD3_k127_605924_22 D-aminopeptidase K16203 - - 0.000000000000000000575 89.0
YYD3_k127_605924_24 Tetratricopeptide repeat - - - 0.000000000000354 82.0
YYD3_k127_605924_25 Thioesterase domain - - - 0.0000003306 54.0
YYD3_k127_605924_26 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000005461 53.0
YYD3_k127_605924_27 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000004673 49.0
YYD3_k127_605924_28 Helix-turn-helix domain - - - 0.00004539 53.0
YYD3_k127_605924_3 ASPIC and UnbV - - - 7.89e-221 698.0
YYD3_k127_605924_4 ASPIC and UnbV - - - 2.503e-204 649.0
YYD3_k127_605924_5 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 597.0
YYD3_k127_605924_6 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005868 561.0
YYD3_k127_605924_7 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 445.0
YYD3_k127_605924_8 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 438.0
YYD3_k127_605924_9 PFAM 3-carboxy-cis,cis-muconate lactonizing enzyme K07404 - 3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 422.0
YYD3_k127_6063808_0 - K00262 - 1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006716 459.0
YYD3_k127_6063808_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008964 383.0
YYD3_k127_6063808_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 367.0
YYD3_k127_6066640_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007783 285.0
YYD3_k127_6066640_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000205 158.0
YYD3_k127_6066640_2 O-Antigen ligase K02847 - - 0.000000000000000000000000000001559 137.0
YYD3_k127_6066640_3 Glycoprotease family K01409,K14742 - 2.3.1.234 0.0000000000000000000000000002536 123.0
YYD3_k127_6066640_4 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000001579 97.0
YYD3_k127_6066640_5 Protein of unknown function (DUF465) - - - 0.0000001807 55.0
YYD3_k127_6066640_6 Tetratricopeptide repeat - - - 0.0005687 52.0
YYD3_k127_6098194_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 382.0
YYD3_k127_6098194_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 361.0
YYD3_k127_6098194_2 PFAM peptidase K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004883 336.0
YYD3_k127_6098194_3 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 317.0
YYD3_k127_6098194_4 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000001818 184.0
YYD3_k127_6098194_5 Flavodoxin-like fold - - - 0.0000000000000000000000000000000000000000000001106 174.0
YYD3_k127_6098194_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000005701 170.0
YYD3_k127_6098194_7 Gram-negative bacterial TonB protein C-terminal - - - 0.000000000000000000476 100.0
YYD3_k127_6098194_8 Domain of unknown function (DUF4136) - - - 0.000000000003569 74.0
YYD3_k127_6098194_9 - - - - 0.000009605 52.0
YYD3_k127_6105037_0 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005638 282.0
YYD3_k127_6105037_1 Biopterin-dependent aromatic amino acid hydroxylase K00500 - 1.14.16.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001679 283.0
YYD3_k127_6105037_2 DNA ligase K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000004861 269.0
YYD3_k127_6105037_3 YceI-like domain - - - 0.0000000000398 72.0
YYD3_k127_6113332_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 5.792e-212 676.0
YYD3_k127_6113332_1 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 528.0
YYD3_k127_6113332_10 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000000000000000000000000000000004209 141.0
YYD3_k127_6113332_11 palmitoyl-(protein) hydrolase activity K06999 - - 0.0000000000000000000000000002578 123.0
YYD3_k127_6113332_12 PFAM UspA domain protein K06149 - - 0.0000000000000000000000002713 112.0
YYD3_k127_6113332_13 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000004361 110.0
YYD3_k127_6113332_14 Belongs to the Nudix hydrolase family - - - 0.0000000000000000009225 92.0
YYD3_k127_6113332_15 FtsZ-dependent cytokinesis - - - 0.00000000000000004966 90.0
YYD3_k127_6113332_16 - - - - 0.0000001017 57.0
YYD3_k127_6113332_17 Domain of unknown function (DUF4440) - - - 0.000005072 56.0
YYD3_k127_6113332_2 amino acid K20265 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0006873,GO:0006885,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0019725,GO:0022804,GO:0022857,GO:0030003,GO:0030004,GO:0030641,GO:0031224,GO:0031226,GO:0034220,GO:0042592,GO:0044425,GO:0044459,GO:0044464,GO:0045852,GO:0046942,GO:0046943,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051453,GO:0051454,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:0098771,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 484.0
YYD3_k127_6113332_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000878 443.0
YYD3_k127_6113332_4 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 297.0
YYD3_k127_6113332_5 FtsJ-like methyltransferase K06442 GO:0000154,GO:0001510,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019835,GO:0019836,GO:0022613,GO:0031167,GO:0031640,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035821,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044003,GO:0044004,GO:0044085,GO:0044179,GO:0044237,GO:0044238,GO:0044260,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046483,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000001333 267.0
YYD3_k127_6113332_6 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001192 256.0
YYD3_k127_6113332_7 ROK family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000001455 221.0
YYD3_k127_6113332_8 Calcineurin-like phosphoesterase K07098 - - 0.00000000000000000000000000000000000000000000000000004512 198.0
YYD3_k127_6113332_9 Phosphoribosyl transferase domain K00762 - 2.4.2.10 0.000000000000000000000000000000000000000008802 160.0
YYD3_k127_6118632_0 FtsX-like permease family - - - 1.677e-248 792.0
YYD3_k127_6118632_1 TIGRFAM methylmalonyl-CoA mutase, large subunit K01848 - 5.4.99.2 6.628e-229 721.0
YYD3_k127_6118632_10 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 587.0
YYD3_k127_6118632_11 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005606 584.0
YYD3_k127_6118632_12 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 568.0
YYD3_k127_6118632_13 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005217 557.0
YYD3_k127_6118632_14 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 536.0
YYD3_k127_6118632_15 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 527.0
YYD3_k127_6118632_16 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 525.0
YYD3_k127_6118632_17 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000915 454.0
YYD3_k127_6118632_18 Branched-chain amino acid transport system / permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009142 407.0
YYD3_k127_6118632_19 ABC-type sugar transport system periplasmic component K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 398.0
YYD3_k127_6118632_2 MacB-like periplasmic core domain - - - 9.338e-223 716.0
YYD3_k127_6118632_20 Belongs to the enoyl-CoA hydratase isomerase family K13766 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000004184 209.0
YYD3_k127_6118632_21 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000002593 201.0
YYD3_k127_6118632_22 - - - - 0.0000000000000000000000000000000000000000006031 159.0
YYD3_k127_6118632_23 Peptidase M56 - - - 0.0000000000000000000000000000000000000002397 165.0
YYD3_k127_6118632_24 Belongs to the UPF0312 family - - - 0.0000000000000000000000002103 112.0
YYD3_k127_6118632_25 MacB-like periplasmic core domain - - - 0.000000000009747 68.0
YYD3_k127_6118632_3 MacB-like periplasmic core domain - - - 3.706e-220 708.0
YYD3_k127_6118632_4 Acyclic terpene utilisation family protein AtuA - - - 6.578e-214 672.0
YYD3_k127_6118632_5 efflux transmembrane transporter activity K02004 - - 4.893e-206 668.0
YYD3_k127_6118632_6 efflux transmembrane transporter activity K02004 - - 8.613e-205 664.0
YYD3_k127_6118632_7 efflux transmembrane transporter activity K02004 - - 6.913e-201 653.0
YYD3_k127_6118632_8 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 600.0
YYD3_k127_6118632_9 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000439 598.0
YYD3_k127_6124711_0 ATPase family associated with various cellular activities (AAA) - - - 4.024e-208 663.0
YYD3_k127_6124711_1 A-macroglobulin complement component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 627.0
YYD3_k127_6124711_10 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000776 211.0
YYD3_k127_6124711_11 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.0000000000000000000000000000000000000000000000000000005295 202.0
YYD3_k127_6124711_13 Copper/zinc superoxide dismutase (SODC) K04565 - 1.15.1.1 0.000000000000000000000000000000000000000000000003056 178.0
YYD3_k127_6124711_14 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.000000000000000000000000000000000000000000000141 169.0
YYD3_k127_6124711_15 - - - - 0.00000000000000000000000000000000006871 135.0
YYD3_k127_6124711_16 Tetratricopeptide repeat - - - 0.000000000000000000000000000000003182 141.0
YYD3_k127_6124711_17 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000003201 121.0
YYD3_k127_6124711_19 GH3 auxin-responsive promoter - - - 0.0000000000000000004161 102.0
YYD3_k127_6124711_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004992 568.0
YYD3_k127_6124711_21 - - - - 0.00000000000002096 84.0
YYD3_k127_6124711_22 Fatty acid desaturase K02294 - - 0.000000001436 68.0
YYD3_k127_6124711_23 pyrroloquinoline quinone binding - - - 0.000000007035 57.0
YYD3_k127_6124711_24 Protein of unknown function (DUF1298) K00635 - 2.3.1.20 0.0003481 53.0
YYD3_k127_6124711_3 Protein of unknown function (DUF2891) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 471.0
YYD3_k127_6124711_4 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 446.0
YYD3_k127_6124711_5 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 364.0
YYD3_k127_6124711_6 ATPases associated with a variety of cellular activities K02049,K15555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001124 261.0
YYD3_k127_6124711_7 Phage shock protein A, PspA K03969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002355 256.0
YYD3_k127_6124711_8 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002288 253.0
YYD3_k127_6124711_9 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000004297 254.0
YYD3_k127_6146203_0 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 546.0
YYD3_k127_6146203_1 Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006546 414.0
YYD3_k127_6146203_2 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 392.0
YYD3_k127_6146203_3 Actin K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001628 263.0
YYD3_k127_6146203_4 PFAM FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002904 252.0
YYD3_k127_6146203_5 Plasmid stabilization - - - 0.0000000000000000000000000006567 113.0
YYD3_k127_6146203_6 - - - - 0.0000000000004809 71.0
YYD3_k127_6148622_0 Arylsulfatase a K01133 - 3.1.6.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 466.0
YYD3_k127_614888_0 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 477.0
YYD3_k127_614888_1 CorA-like Mg2+ transporter protein K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 292.0
YYD3_k127_614888_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000001462 235.0
YYD3_k127_614888_3 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000002456 175.0
YYD3_k127_614888_4 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0006993 48.0
YYD3_k127_617009_0 dioxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 424.0
YYD3_k127_617009_1 2-epimerase K16213 - 5.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 414.0
YYD3_k127_6181227_0 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000000002445 114.0
YYD3_k127_6215587_0 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 295.0
YYD3_k127_6215587_1 Protein of unknown function (DUF421) - - - 0.0000000000000000000000000000000000000000000003431 169.0
YYD3_k127_6215587_2 peptidase inhibitor activity - - - 0.000000000000001286 85.0
YYD3_k127_6238814_0 Radical SAM - - - 8.05e-322 996.0
YYD3_k127_6238814_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000633 589.0
YYD3_k127_6238814_10 protein serine/threonine phosphatase activity - - - 0.0000000000000000000001871 106.0
YYD3_k127_6238814_11 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000002728 78.0
YYD3_k127_6238814_12 nUDIX hydrolase - - - 0.00000000000002181 77.0
YYD3_k127_6238814_13 - - - - 0.00000000004082 73.0
YYD3_k127_6238814_14 PrcB C-terminal - - - 0.00000157 56.0
YYD3_k127_6238814_2 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008208 300.0
YYD3_k127_6238814_3 SNARE associated Golgi protein K01077 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 291.0
YYD3_k127_6238814_4 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000001749 243.0
YYD3_k127_6238814_5 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000005436 226.0
YYD3_k127_6238814_6 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000001252 233.0
YYD3_k127_6238814_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000009459 198.0
YYD3_k127_6238814_8 - - - - 0.0000000000000000000000000000000000001452 150.0
YYD3_k127_6238814_9 Bacterial protein of unknown function (DUF937) - - - 0.0000000000000000000000000000001242 132.0
YYD3_k127_6252236_0 Subtilase family K14645 GO:0005575,GO:0005576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009851 350.0
YYD3_k127_6252236_1 Tetratricopeptide repeat - - - 0.0007173 51.0
YYD3_k127_626328_0 B12 binding domain - - - 1.634e-263 826.0
YYD3_k127_626328_1 Cytochrome P450 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004059 380.0
YYD3_k127_626328_2 belongs to the UPF0276 family K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 327.0
YYD3_k127_626328_3 protein-(glutamine-N5) methyltransferase activity K21786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009388 299.0
YYD3_k127_626328_5 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000001299 137.0
YYD3_k127_626328_6 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000001557 104.0
YYD3_k127_6307917_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1053.0
YYD3_k127_6307917_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 402.0
YYD3_k127_6307917_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576 2.7.8.5 0.0000000000000000000000000000000000009856 148.0
YYD3_k127_6340259_0 Tetratricopeptide repeat - - - 4.214e-214 702.0
YYD3_k127_6340259_1 PFAM Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 451.0
YYD3_k127_6340259_2 thymidine kinase activity K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000002613 227.0
YYD3_k127_6340259_4 Clostripain family - - - 0.0000000000000000000000000000000001272 151.0
YYD3_k127_6340259_5 Protein of unknown function DUF84 - - - 0.000000000001246 76.0
YYD3_k127_6340259_6 Clostripain family - - - 0.000008508 59.0
YYD3_k127_6345039_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 539.0
YYD3_k127_6345039_1 Serine aminopeptidase, S33 K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 298.0
YYD3_k127_6345039_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000004129 180.0
YYD3_k127_6345039_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery K07277 - - 0.0000001906 63.0
YYD3_k127_6354123_0 CHASE3 domain - - - 5.119e-247 779.0
YYD3_k127_6354123_1 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 449.0
YYD3_k127_6354123_2 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000001181 196.0
YYD3_k127_6354123_3 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000007335 157.0
YYD3_k127_6354123_4 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000001884 98.0
YYD3_k127_6354123_5 AMP binding - - - 0.0000000000000002775 91.0
YYD3_k127_6354123_6 Universal stress protein family - - - 0.0000000000001252 82.0
YYD3_k127_6354123_7 PFAM Prokaryotic dksA traR C4-type zinc finger - - - 0.0000001573 61.0
YYD3_k127_6357454_0 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001149 281.0
YYD3_k127_6357454_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000428 218.0
YYD3_k127_6357454_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000001319 228.0
YYD3_k127_6357454_3 Catalyzes the NAD( )-dependent oxidative deamination of L-alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate K19244 - 1.4.1.1 0.000000000661 61.0
YYD3_k127_6375594_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 565.0
YYD3_k127_6375594_1 Protein kinase domain K12132 - 2.7.11.1 0.00000004314 55.0
YYD3_k127_6375775_0 Belongs to the glycosyl hydrolase 2 family K01195 - 3.2.1.31 1.318e-251 792.0
YYD3_k127_6375775_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000001671 229.0
YYD3_k127_6375775_2 Protein of unknown function (DUF1203) - - - 0.00000000000000000000000000000000000000000000001059 175.0
YYD3_k127_6375775_3 - - - - 0.00000000000000000000000000000000000000000124 168.0
YYD3_k127_6375775_5 - - - - 0.000000000001049 77.0
YYD3_k127_6375775_6 Acetyltransferase (GNAT) domain - GO:0003674,GO:0003824,GO:0016740,GO:0016746,GO:0016747 - 0.000000004088 63.0
YYD3_k127_6376804_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K11177 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 499.0
YYD3_k127_6376804_1 Zn-dependent protease with chaperone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 464.0
YYD3_k127_6376804_2 Glycosyl Hydrolase Family 88 K15532 - 3.2.1.172 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 424.0
YYD3_k127_6376804_3 CO dehydrogenase flavoprotein C-terminal domain K11178 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004534 293.0
YYD3_k127_6376804_4 2Fe-2S -binding K13483 - - 0.00000000000000000000000000000000000000000000000000000009453 203.0
YYD3_k127_6376804_5 FCD K05799 - - 0.0000000000000000000000000006956 118.0
YYD3_k127_6376804_6 Protein of unknown function (DUF1326) - - - 0.0000000000000001223 88.0
YYD3_k127_6376804_7 family 2, TIM barrel K01190 - 3.2.1.23 0.00000000000008456 72.0
YYD3_k127_6382511_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 2.432e-207 667.0
YYD3_k127_6382511_1 Amidase K01426 - 3.5.1.4 1.509e-200 638.0
YYD3_k127_6382511_10 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 343.0
YYD3_k127_6382511_11 MotA TolQ ExbB proton channel K03561,K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001634 273.0
YYD3_k127_6382511_12 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002515 256.0
YYD3_k127_6382511_13 Domain of unknown function (DUF4287) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006136 242.0
YYD3_k127_6382511_14 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000001695 211.0
YYD3_k127_6382511_15 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000002862 161.0
YYD3_k127_6382511_16 - - - - 0.0000000000000000000000000000000000000000009478 167.0
YYD3_k127_6382511_17 Transposase K07497 - - 0.000000000000000000000000006703 112.0
YYD3_k127_6382511_18 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.00000000000000000000000742 106.0
YYD3_k127_6382511_19 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000004486 112.0
YYD3_k127_6382511_2 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004926 580.0
YYD3_k127_6382511_20 Integrase core domain K07497 - - 0.00000000000000000001395 95.0
YYD3_k127_6382511_21 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000003109 94.0
YYD3_k127_6382511_22 TIGRFAM TonB K03832 - - 0.000000000000000007038 93.0
YYD3_k127_6382511_23 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000004648 94.0
YYD3_k127_6382511_24 Preprotein translocase subunit K03210 - - 0.0000000000000008637 82.0
YYD3_k127_6382511_25 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000001477 89.0
YYD3_k127_6382511_26 Belongs to the UPF0102 family K07460 - - 0.000000000000001891 83.0
YYD3_k127_6382511_27 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.00000000000001944 79.0
YYD3_k127_6382511_28 Tetratricopeptide repeat - - - 0.00000000000333 76.0
YYD3_k127_6382511_29 - - - - 0.0000000003209 68.0
YYD3_k127_6382511_3 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 587.0
YYD3_k127_6382511_30 - - - - 0.000005384 49.0
YYD3_k127_6382511_31 - - - - 0.000009229 49.0
YYD3_k127_6382511_4 Involved in the tonB-independent uptake of proteins K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004583 535.0
YYD3_k127_6382511_5 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 465.0
YYD3_k127_6382511_6 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005826 440.0
YYD3_k127_6382511_7 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 425.0
YYD3_k127_6382511_8 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 411.0
YYD3_k127_6382511_9 Transcriptional regulator K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 406.0
YYD3_k127_6399390_0 PFAM Amidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 589.0
YYD3_k127_6399390_1 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.00000000000000000000000000000000000000001383 168.0
YYD3_k127_6399390_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000001635 134.0
YYD3_k127_6399390_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.00000000000000000000004654 99.0
YYD3_k127_6400486_0 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 538.0
YYD3_k127_6400486_1 protein kinase related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 525.0
YYD3_k127_6400486_10 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000001024 136.0
YYD3_k127_6400486_11 Protein of unknown function (DUF3311) - - - 0.00000000000001676 76.0
YYD3_k127_6400486_12 Ankyrin repeat - - - 0.000000000002297 78.0
YYD3_k127_6400486_2 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 483.0
YYD3_k127_6400486_3 Iron-containing alcohol dehydrogenase K00001,K13954 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 402.0
YYD3_k127_6400486_4 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009236 369.0
YYD3_k127_6400486_5 Sigma-54 interaction domain K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 338.0
YYD3_k127_6400486_6 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006026 337.0
YYD3_k127_6400486_7 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 332.0
YYD3_k127_6400486_8 protein kinase related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 297.0
YYD3_k127_6400486_9 PFAM regulatory protein LuxR - - - 0.000000000000000000000000000000000000000000000000000000000005205 215.0
YYD3_k127_6414747_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0 1042.0
YYD3_k127_6414747_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005695 615.0
YYD3_k127_6414747_2 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 292.0
YYD3_k127_6414747_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000006481 186.0
YYD3_k127_642143_0 Domain of unknown function (DUF3471) K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 380.0
YYD3_k127_642143_1 Binding-protein-dependent transport system inner membrane component K02050,K15554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002674 284.0
YYD3_k127_642143_2 anion transmembrane transporter activity K02049,K15555,K15558 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000317 274.0
YYD3_k127_642143_4 peptidase S9 - - - 0.0000002306 63.0
YYD3_k127_6422960_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 392.0
YYD3_k127_6422960_1 peptidase dimerisation domain protein K01436 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 316.0
YYD3_k127_6422960_2 protein containing SIS (Sugar ISomerase) phosphosugar binding domain - - - 0.00000000000000000000000000000000000000000000000000000003858 205.0
YYD3_k127_6422960_3 Participates in the control of copper homeostasis K06201 GO:0006873,GO:0006875,GO:0006878,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0046688,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771 - 0.0000000000000000000000000000000000000000000399 169.0
YYD3_k127_6431521_0 ABC1 family K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 562.0
YYD3_k127_6431521_1 ATP dependent DNA ligase C terminal region K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 554.0
YYD3_k127_6431521_2 Peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 479.0
YYD3_k127_6431521_3 Peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 389.0
YYD3_k127_6431521_4 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003559 280.0
YYD3_k127_6431521_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.00000000000000000000000000000000001369 149.0
YYD3_k127_6431521_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000001334 73.0
YYD3_k127_6431521_7 Serine aminopeptidase, S33 K06889 - - 0.000001297 52.0
YYD3_k127_6431521_8 Tetratricopeptide repeat - - - 0.000003845 59.0
YYD3_k127_6451565_0 FtsX-like permease family - - - 1.076e-212 702.0
YYD3_k127_6451565_1 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 551.0
YYD3_k127_6451565_2 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 364.0
YYD3_k127_6451565_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496 349.0
YYD3_k127_6451565_4 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000238 288.0
YYD3_k127_6451565_5 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K02003,K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001645 260.0
YYD3_k127_6451565_6 - - - - 0.00000000000000000000003277 105.0
YYD3_k127_6451565_7 heat shock protein DnaJ domain protein K05516 - - 0.000000000009745 74.0
YYD3_k127_6455330_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003539 295.0
YYD3_k127_6455330_1 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.00000000000000000000000000000000000000000000000000000007231 206.0
YYD3_k127_6455330_2 Type IV leader peptidase family K02278 - 3.4.23.43 0.000000000000000345 86.0
YYD3_k127_6455330_3 Belongs to the GSP D family K02280 - - 0.0000000001122 70.0
YYD3_k127_6455330_4 Flp Fap pilin component K02651 - - 0.0000005352 53.0
YYD3_k127_6455330_5 Binds directly to 16S ribosomal RNA K02968 - - 0.0000168 51.0
YYD3_k127_6455330_6 PFAM Flp Fap pilin component K02651 - - 0.0008481 45.0
YYD3_k127_6460589_0 Male sterility protein K01897 - 6.2.1.3 0.0 1321.0
YYD3_k127_6460589_1 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 4.081e-297 939.0
YYD3_k127_6460589_10 Peptidase family S41 - - - 0.0000000003117 74.0
YYD3_k127_6460589_2 Domain of unknown function (DUF2088) - - - 1.846e-222 701.0
YYD3_k127_6460589_3 Tetratricopeptide repeat - - - 1.741e-198 635.0
YYD3_k127_6460589_4 SMART tyrosine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 367.0
YYD3_k127_6460589_5 epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 306.0
YYD3_k127_6460589_6 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004862 250.0
YYD3_k127_6460589_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000003749 133.0
YYD3_k127_6460589_8 methyltransferase - - - 0.00000000000000002734 91.0
YYD3_k127_6460589_9 Phage Tail Collar Domain - - - 0.00000000000003694 74.0
YYD3_k127_647646_0 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 321.0
YYD3_k127_647646_1 von Willebrand factor type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 306.0
YYD3_k127_647646_2 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001608 271.0
YYD3_k127_647646_3 Predicted membrane protein (DUF2306) - - - 0.0000000000000000000000000000000000000000000000000000000000002477 218.0
YYD3_k127_647646_4 Ecdysteroid kinase - - - 0.00000000000000000000000000000000000000000000000000000002837 207.0
YYD3_k127_647646_5 - - - - 0.000000000000000000000000000000000000000000000005921 179.0
YYD3_k127_647646_6 oxidoreductase activity, acting on diphenols and related substances as donors - - - 0.00000000000000000000007129 104.0
YYD3_k127_647646_7 N,N-dimethylaniline monooxygenase activity - - - 0.000000000000000000001526 95.0
YYD3_k127_647646_8 MerR HTH family regulatory protein - - - 0.00000000000000008218 89.0
YYD3_k127_6483514_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 507.0
YYD3_k127_6483514_1 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005978 376.0
YYD3_k127_6483514_2 PEP-utilising enzyme, mobile domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 343.0
YYD3_k127_6483514_3 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000206 205.0
YYD3_k127_6483514_4 AMP binding K06149 - - 0.0000000000000000000000000000004811 127.0
YYD3_k127_6483514_5 - - - - 0.00000000008852 65.0
YYD3_k127_6499886_0 ATPase associated with various cellular K03924 - - 0.00000000000005562 72.0
YYD3_k127_6499886_1 Domain of unknown function (DUF4350) - - - 0.0000000003702 72.0
YYD3_k127_6499886_2 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.0000000007088 70.0
YYD3_k127_6499886_3 Domain of unknown function (DUF4129) - - - 0.0002029 53.0
YYD3_k127_6502570_0 Protein export membrane protein K03296,K18138 - - 0.0 1210.0
YYD3_k127_6502570_1 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 6.76e-206 662.0
YYD3_k127_6502570_10 - - - - 0.0000000000000000000000000004451 120.0
YYD3_k127_6502570_11 B12 binding domain - - - 0.00000000000000006754 91.0
YYD3_k127_6502570_13 Helix-turn-helix domain - - - 0.0006536 51.0
YYD3_k127_6502570_2 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 524.0
YYD3_k127_6502570_3 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 475.0
YYD3_k127_6502570_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 468.0
YYD3_k127_6502570_5 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 406.0
YYD3_k127_6502570_6 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 416.0
YYD3_k127_6502570_7 Biotin-lipoyl like K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 379.0
YYD3_k127_6502570_8 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000008872 187.0
YYD3_k127_6502570_9 - - - - 0.00000000000000000000000000002581 121.0
YYD3_k127_653519_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.0 1060.0
YYD3_k127_653519_1 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 575.0
YYD3_k127_653519_10 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 417.0
YYD3_k127_653519_11 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 372.0
YYD3_k127_653519_12 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 364.0
YYD3_k127_653519_13 Branched-chain amino acid ATP-binding cassette transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 320.0
YYD3_k127_653519_14 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000849 323.0
YYD3_k127_653519_15 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 300.0
YYD3_k127_653519_16 Mo-molybdopterin cofactor biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004178 273.0
YYD3_k127_653519_17 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000005303 230.0
YYD3_k127_653519_18 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000005647 203.0
YYD3_k127_653519_19 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000000000000000000000000002025 197.0
YYD3_k127_653519_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 566.0
YYD3_k127_653519_20 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000005156 183.0
YYD3_k127_653519_21 Belongs to the UPF0145 family - - - 0.0000000000000000000000000000000000000000001742 162.0
YYD3_k127_653519_22 PHP domain protein - - - 0.000000000000000000000000000000000000006107 160.0
YYD3_k127_653519_23 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000002368 117.0
YYD3_k127_653519_24 methylated DNA-protein cysteine methyltransferase K07443 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0019899,GO:0097159,GO:1901363 - 0.000000000000000000222 92.0
YYD3_k127_653519_25 Regulates arginine biosynthesis genes K03402 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000004556 93.0
YYD3_k127_653519_26 PFAM thioesterase superfamily protein - - - 0.0000000000000002993 83.0
YYD3_k127_653519_28 PD-(D/E)XK nuclease superfamily - - - 0.00000006605 54.0
YYD3_k127_653519_29 Protein of unknown function (DUF983) - - - 0.0000001623 61.0
YYD3_k127_653519_3 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000923 578.0
YYD3_k127_653519_30 lytic transglycosylase activity K03194 - - 0.0000001718 63.0
YYD3_k127_653519_4 ABC transporter transmembrane region K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 554.0
YYD3_k127_653519_5 ABC transporter, transmembrane K18889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000307 552.0
YYD3_k127_653519_6 argininosuccinate lyase K01755,K14681 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 482.0
YYD3_k127_653519_7 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009544 428.0
YYD3_k127_653519_8 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008323 426.0
YYD3_k127_653519_9 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 403.0
YYD3_k127_6535782_0 serine threonine protein kinase K12132 - 2.7.11.1 2.591e-220 717.0
YYD3_k127_6535782_1 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 412.0
YYD3_k127_6535782_2 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000002984 216.0
YYD3_k127_654877_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 3.463e-194 618.0
YYD3_k127_654877_11 endonuclease III - - - 0.0000000000000000000000000000000000000000000000000000000001134 210.0
YYD3_k127_654877_12 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 - - 0.0000000000000000000000000000000000000000000007755 168.0
YYD3_k127_654877_13 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000003092 187.0
YYD3_k127_654877_14 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000005476 150.0
YYD3_k127_654877_15 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.0000000000000000000000000000000000003845 154.0
YYD3_k127_654877_16 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000004556 145.0
YYD3_k127_654877_17 Ferredoxin - - - 0.000000000000000000000000004741 114.0
YYD3_k127_654877_18 Trypsin-like peptidase domain - - - 0.0000000000000000000000002847 121.0
YYD3_k127_654877_19 Belongs to the peptidase S1C family - - - 0.0000000000000000008714 100.0
YYD3_k127_654877_2 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005622 497.0
YYD3_k127_654877_20 GMP synthase (glutamine-hydrolyzing) activity K01951 - 6.3.5.2 0.0000001279 63.0
YYD3_k127_654877_21 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00001592 56.0
YYD3_k127_654877_23 Tetratricopeptide TPR_2 repeat protein - - - 0.0005072 52.0
YYD3_k127_654877_24 membrane - - - 0.0005462 53.0
YYD3_k127_654877_25 Domain of unknown function (DUF4349) - - - 0.0006704 50.0
YYD3_k127_654877_3 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00282 GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006807,GO:0008150,GO:0008152,GO:0009069,GO:0009987,GO:0016491,GO:0016638,GO:0016642,GO:0017144,GO:0019752,GO:0032991,GO:0042133,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901605,GO:1902494,GO:1990204 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009946 480.0
YYD3_k127_654877_4 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004241 454.0
YYD3_k127_654877_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 431.0
YYD3_k127_654877_6 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004244 409.0
YYD3_k127_654877_7 ligase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007645 381.0
YYD3_k127_654877_8 Domain of unknown function (DUF5117) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 365.0
YYD3_k127_654877_9 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 369.0
YYD3_k127_6552040_0 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 0.0 1129.0
YYD3_k127_6552040_1 Fibronectin type III-like domain K05349 - 3.2.1.21 0.0 1023.0
YYD3_k127_6552040_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 565.0
YYD3_k127_6552040_3 hydrolase, family 3 K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 506.0
YYD3_k127_6552040_4 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 456.0
YYD3_k127_6552040_5 zinc metalloprotease K11749 - - 0.000000000000947 76.0
YYD3_k127_6552040_6 cytochrome P450 K21115 - - 0.00000174 51.0
YYD3_k127_6584416_0 von Willebrand factor, type A K07114 - - 1.457e-212 679.0
YYD3_k127_6584416_1 - - - - 0.00000000000000000519 93.0
YYD3_k127_6627835_0 alpha-L-rhamnosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 525.0
YYD3_k127_6627835_1 Sulfatase - - - 0.000000001106 62.0
YYD3_k127_6637160_0 Response receiver-modulated cyclic diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003324 319.0
YYD3_k127_6637160_1 PFAM Phosphate acetyl butaryl transferase K00625 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007461 306.0
YYD3_k127_6637160_2 von Willebrand factor, type A - - - 0.000002203 59.0
YYD3_k127_6638873_0 transport - - - 0.0 1146.0
YYD3_k127_6638873_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006389 489.0
YYD3_k127_6638873_10 PFAM Peptidase M20 - - - 0.0000000000000000000000000000000000000000000000000000000007253 216.0
YYD3_k127_6638873_11 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000004191 190.0
YYD3_k127_6638873_12 PFAM TM2 domain - - - 0.00000000000000000000000000001473 123.0
YYD3_k127_6638873_13 Protein of unknown function (DUF2752) - - - 0.00000000000000000000007097 102.0
YYD3_k127_6638873_14 Interferon-induced transmembrane protein - - - 0.0000000000000000001698 91.0
YYD3_k127_6638873_15 O-Antigen ligase K18814 - - 0.00000000000000000818 97.0
YYD3_k127_6638873_16 - - - - 0.000000000000002285 83.0
YYD3_k127_6638873_17 Polysaccharide biosynthesis/export protein - - - 0.00000000000001801 85.0
YYD3_k127_6638873_2 transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 507.0
YYD3_k127_6638873_3 major pilin protein fima - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 423.0
YYD3_k127_6638873_4 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 360.0
YYD3_k127_6638873_5 Protein of unknown function (DUF512) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 332.0
YYD3_k127_6638873_6 Highly conserved protein containing a thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464 307.0
YYD3_k127_6638873_7 PFAM sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003667 301.0
YYD3_k127_6638873_8 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002294 243.0
YYD3_k127_6638873_9 Protein of unknown function (DUF354) K09726 - - 0.000000000000000000000000000000000000000000000000000000000000000002393 238.0
YYD3_k127_6651540_0 Belongs to the allantoicase family K01477 - 3.5.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 464.0
YYD3_k127_6651540_2 ATPase associated with various cellular activities, AAA_3 K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 364.0
YYD3_k127_6651540_3 PFAM Formiminotransferase domain K00603,K13990 - 2.1.2.5,4.3.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 321.0
YYD3_k127_6651540_4 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000484 261.0
YYD3_k127_6651540_5 Stage II sporulation protein M - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008077 249.0
YYD3_k127_6651540_6 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000005136 250.0
YYD3_k127_6651540_7 Belongs to the allantoicase family K01477 - 3.5.3.4 0.00000000000000000000000000000000000000000000004387 174.0
YYD3_k127_6651540_8 Transthyretin K07127 - 3.5.2.17 0.000000000000000000000000000000001969 132.0
YYD3_k127_665506_0 dna ligase - - - 4.17e-227 709.0
YYD3_k127_665506_1 ATP dependent DNA ligase C terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 557.0
YYD3_k127_665506_10 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.000000000000000000000000000000000000000000000000000000002867 206.0
YYD3_k127_665506_11 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000007222 150.0
YYD3_k127_665506_12 4Fe-4S binding domain K11473 - - 0.000000000000000000000000000000004333 135.0
YYD3_k127_665506_13 peptidyl-tyrosine sulfation K03217,K06872 - - 0.0000000000000000000000000000000217 141.0
YYD3_k127_665506_14 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.0000000002017 69.0
YYD3_k127_665506_15 Protein of unknown function (DUF433) - - - 0.0000003468 55.0
YYD3_k127_665506_2 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237 561.0
YYD3_k127_665506_3 PFAM FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 504.0
YYD3_k127_665506_4 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 397.0
YYD3_k127_665506_5 H( )-stimulated, divalent metal cation uptake system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 396.0
YYD3_k127_665506_6 mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002991 381.0
YYD3_k127_665506_7 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 - 3.1.3.77 0.0000000000000000000000000000000000000000000000000000000000000000000003347 245.0
YYD3_k127_665506_8 Beta-lactamase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001162 249.0
YYD3_k127_665506_9 Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway K08967 - 1.13.11.53,1.13.11.54 0.0000000000000000000000000000000000000000000000000000000000000000000676 235.0
YYD3_k127_666280_0 cellulose binding - - - 3.429e-293 931.0
YYD3_k127_666280_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 9.721e-234 732.0
YYD3_k127_666280_10 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000003019 266.0
YYD3_k127_666280_11 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000001368 220.0
YYD3_k127_666280_12 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000000000003805 186.0
YYD3_k127_666280_13 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000001298 164.0
YYD3_k127_666280_14 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000004893 134.0
YYD3_k127_666280_15 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000003796 123.0
YYD3_k127_666280_16 Biotin-requiring enzyme - - - 0.0000000000000000004503 95.0
YYD3_k127_666280_17 MacB-like periplasmic core domain K02004 - - 0.00000000000002691 72.0
YYD3_k127_666280_18 Gram-negative bacterial TonB protein C-terminal - - - 0.000000002015 68.0
YYD3_k127_666280_19 - - - - 0.00000015 58.0
YYD3_k127_666280_2 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 7.195e-230 722.0
YYD3_k127_666280_20 Yip1 domain - - - 0.000002226 59.0
YYD3_k127_666280_21 - - - - 0.00001494 50.0
YYD3_k127_666280_3 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 490.0
YYD3_k127_666280_4 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 430.0
YYD3_k127_666280_5 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 410.0
YYD3_k127_666280_6 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 406.0
YYD3_k127_666280_7 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 375.0
YYD3_k127_666280_8 polysaccharide deacetylase K22278 - 3.5.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 323.0
YYD3_k127_666280_9 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001018 294.0
YYD3_k127_6695090_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K03737 - 1.2.7.1 0.0 1745.0
YYD3_k127_6695090_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007536 445.0
YYD3_k127_6695090_2 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007923 321.0
YYD3_k127_6695090_3 Chlorophyllase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 303.0
YYD3_k127_6695090_5 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000009152 136.0
YYD3_k127_6695090_6 Hsp20/alpha crystallin family - - - 0.0000000000000000000000000000000001415 136.0
YYD3_k127_6695090_8 peptidyl-tyrosine sulfation - - - 0.00000000000003686 85.0
YYD3_k127_6695090_9 23S rRNA-intervening sequence protein - - - 0.000000578 54.0
YYD3_k127_6698105_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 2.913e-247 780.0
YYD3_k127_6698105_1 Stage II sporulation D domain protein K06381 - - 0.00000000000000000000000000000000000000000000000000000001659 225.0
YYD3_k127_6698105_2 oxidoreductase activity - - - 0.00000000000000000001863 106.0
YYD3_k127_6698105_4 Anaphase-promoting complex, cyclosome, subunit 3 - - - 0.0000008118 61.0
YYD3_k127_6715650_0 PrkA AAA domain protein K07180 - - 6.87e-306 949.0
YYD3_k127_6715650_1 Belongs to the UPF0229 family K09786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 491.0
YYD3_k127_6715650_2 SpoVR like protein K06415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004211 255.0
YYD3_k127_6715650_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177,K03483 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000001121 225.0
YYD3_k127_6715650_4 PFAM alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000002789 161.0
YYD3_k127_6715650_5 RecX family K03565 - - 0.0000001263 62.0
YYD3_k127_6715799_0 Belongs to the xylose isomerase family K01805 - 5.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000355 615.0
YYD3_k127_6715799_1 Galactokinase galactose-binding signature K00849 - 2.7.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000462 471.0
YYD3_k127_6715799_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 368.0
YYD3_k127_6715799_3 PFAM Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.00000000000000000000000000000000475 132.0
YYD3_k127_6715799_4 Inositol monophosphatase family K01082,K01092 - 3.1.3.25,3.1.3.7 0.00000000000000000000000000133 113.0
YYD3_k127_6715799_5 ABC-type sugar transport system periplasmic component K10439 - - 0.000000000000000000003297 96.0
YYD3_k127_6755346_0 serine-type peptidase activity - - - 5.289e-257 805.0
YYD3_k127_6755346_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 3.032e-220 704.0
YYD3_k127_6755346_10 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 394.0
YYD3_k127_6755346_11 Belongs to the cysteine synthase cystathionine beta- synthase family K12339,K21148 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0033847,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.113,2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 372.0
YYD3_k127_6755346_12 Cys Met metabolism K01739 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000795 370.0
YYD3_k127_6755346_13 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004947 370.0
YYD3_k127_6755346_14 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 310.0
YYD3_k127_6755346_15 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000002902 252.0
YYD3_k127_6755346_16 beta-fructofuranosidase activity - - - 0.0000000000000000000000000000000000000000000000000001928 207.0
YYD3_k127_6755346_17 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000003193 195.0
YYD3_k127_6755346_18 Peptidase family M23 K21472 - - 0.000000000000000000000000000000000000000000000005341 183.0
YYD3_k127_6755346_19 JAB/MPN domain - - - 0.00000000000000000000000000000000000000000001627 166.0
YYD3_k127_6755346_2 ThiS family K21029,K21147 - 2.7.7.80,2.8.1.11 7.121e-195 619.0
YYD3_k127_6755346_20 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000003875 143.0
YYD3_k127_6755346_21 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071944,GO:1990904 - 0.00000000000000000000000000000002954 128.0
YYD3_k127_6755346_22 Predicted membrane protein (DUF2085) - - - 0.000000000000000000000000000025 124.0
YYD3_k127_6755346_23 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000000000004932 131.0
YYD3_k127_6755346_24 Transcriptional regulator, AraC family K18991 - - 0.000000000000282 76.0
YYD3_k127_6755346_25 ErfK YbiS YcfS YnhG - - - 0.000000000001024 80.0
YYD3_k127_6755346_26 - - - - 0.000000000001358 70.0
YYD3_k127_6755346_3 Acyl-CoA dehydrogenase, C-terminal domain K16173 - 1.3.99.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007538 509.0
YYD3_k127_6755346_4 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 512.0
YYD3_k127_6755346_5 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 499.0
YYD3_k127_6755346_6 glycyl-tRNA aminoacylation K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 499.0
YYD3_k127_6755346_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 418.0
YYD3_k127_6755346_8 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446 - 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005727 412.0
YYD3_k127_6755346_9 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 403.0
YYD3_k127_677150_0 Cytochrome C oxidase subunit II, periplasmic domain K00376 - 1.7.2.4 1.383e-305 946.0
YYD3_k127_677150_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 6.144e-238 751.0
YYD3_k127_677150_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009415 564.0
YYD3_k127_677150_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008144 490.0
YYD3_k127_677150_4 - - - - 0.000000000000000000000000000000000000000000000000000000006631 204.0
YYD3_k127_677150_5 lipoprotein involved in nitrous oxide reduction - - - 0.000000000000000000000000000000000000000000000000000002276 199.0
YYD3_k127_677150_6 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.0000000000000000000000000000000000000000000000000000736 192.0
YYD3_k127_677150_7 YwiC-like protein - - - 0.00000000000000000000000007577 114.0
YYD3_k127_6812312_0 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006888 549.0
YYD3_k127_6812312_1 ABC-type polysaccharide polyol phosphate transport system, ATPase component K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 426.0
YYD3_k127_6812312_10 Mycolic acid cyclopropane synthetase - - - 0.000000000000000000000000000000000000000001961 166.0
YYD3_k127_6812312_11 methyltransferase - - - 0.0000000000000000000000000000000000000003301 159.0
YYD3_k127_6812312_12 COG1209 dTDP-glucose pyrophosphorylase K00973 - 2.7.7.24 0.0000000000000000621 93.0
YYD3_k127_6812312_13 Methionine biosynthesis protein MetW K00570 - 2.1.1.17,2.1.1.71 0.000000000000002454 85.0
YYD3_k127_6812312_14 Nudix hydrolase - - - 0.00000000000008647 83.0
YYD3_k127_6812312_15 glycosyl transferase family 2 K07011 - - 0.000007789 49.0
YYD3_k127_6812312_16 Methyltransferase domain - - - 0.0004802 52.0
YYD3_k127_6812312_2 ABC-type polysaccharide polyol phosphate transport system ATPase component K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 420.0
YYD3_k127_6812312_3 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 414.0
YYD3_k127_6812312_4 beta-fructofuranosidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008944 348.0
YYD3_k127_6812312_5 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 340.0
YYD3_k127_6812312_6 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 308.0
YYD3_k127_6812312_7 COG1682 ABC-type polysaccharide polyol phosphate export systems, permease component K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 299.0
YYD3_k127_6812312_9 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000000000000000000007047 239.0
YYD3_k127_6828440_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372,K02567 - - 6.411e-219 692.0
YYD3_k127_6828440_1 dioxygenase K15777 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0046566,GO:0051213,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006458 395.0
YYD3_k127_6828440_2 nitrite transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003262 314.0
YYD3_k127_6828440_3 Domain of Unknown function (DUF542) K07322 - - 0.00000000000000000000000000000000000000000000000000000000000009614 222.0
YYD3_k127_6835995_0 Peptidase family S41 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 410.0
YYD3_k127_6835995_1 Xaa-Pro aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 389.0
YYD3_k127_684180_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 446.0
YYD3_k127_684180_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000003249 113.0
YYD3_k127_68422_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 2.335e-199 639.0
YYD3_k127_68422_1 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 463.0
YYD3_k127_68422_10 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000001628 118.0
YYD3_k127_68422_11 Mov34 MPN PAD-1 family K21140 - 3.13.1.6 0.00000000000000000000003295 104.0
YYD3_k127_68422_12 Domain of unknown function (DUF1844) - - - 0.000000000001934 75.0
YYD3_k127_68422_13 Periplasmic or secreted lipoprotein - - - 0.000000000003294 79.0
YYD3_k127_68422_14 - - - - 0.00007675 52.0
YYD3_k127_68422_2 ABC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 361.0
YYD3_k127_68422_3 TIGRFAM MazG family protein K02428,K04765 - 3.6.1.66,3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000001611 259.0
YYD3_k127_68422_4 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000318 252.0
YYD3_k127_68422_5 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000007785 253.0
YYD3_k127_68422_6 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000000000000000000000000000001375 222.0
YYD3_k127_68422_7 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000000000000005103 195.0
YYD3_k127_68422_8 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000003159 203.0
YYD3_k127_68422_9 CHRD domain - - - 0.000000000000000000000000000000000006638 140.0
YYD3_k127_6849712_0 OmpA family K02557,K03286 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 501.0
YYD3_k127_6849712_1 sequence-specific DNA binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 432.0
YYD3_k127_6849712_2 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 434.0
YYD3_k127_6849712_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 323.0
YYD3_k127_6849712_4 Fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000001131 234.0
YYD3_k127_6849712_5 TIGRFAM small GTP-binding protein domain K06883 - - 0.000000000000000000000000000000000000000000000000000000000009735 211.0
YYD3_k127_6849712_6 translation initiation factor activity - - - 0.00000000000000000000000000000000000000000000000000007481 188.0
YYD3_k127_6849712_7 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000002807 188.0
YYD3_k127_6849712_8 Protein conserved in bacteria - - - 0.000000000000000000000000000000000002207 145.0
YYD3_k127_6858096_0 Vitamin B12 dependent methionine synthase activation K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 364.0
YYD3_k127_6858096_1 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - - - 0.000000000000000000000000000000000000000000000000000000000000004182 229.0
YYD3_k127_6858096_2 Heat shock protein DnaJ domain protein - - - 0.0000000000000000000000000000000000000000000001442 183.0
YYD3_k127_6858096_3 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000001858 169.0
YYD3_k127_6858096_4 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000001447 156.0
YYD3_k127_691192_0 type II secretion system protein E K02283,K20527 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 564.0
YYD3_k127_691192_1 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 353.0
YYD3_k127_691192_10 - - - - 0.000007621 56.0
YYD3_k127_691192_11 - - - - 0.0003366 51.0
YYD3_k127_691192_2 Type II secretion system K12510 - - 0.000000000000000000000000000000000000000000000000000000000000277 224.0
YYD3_k127_691192_3 Secretion system protein K12511 - - 0.000000000000000000000000000000000000000000000000000000004026 211.0
YYD3_k127_691192_4 NUBPL iron-transfer P-loop NTPase K02282 - - 0.0000000000000000000000000000000000000000000000000003119 200.0
YYD3_k127_691192_5 PFAM Transglycosylase SLT domain K08309 - - 0.000000000000000000000000000000009011 140.0
YYD3_k127_691192_6 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000004873 102.0
YYD3_k127_691192_7 TadE-like protein - - - 0.0000000000000002463 87.0
YYD3_k127_691192_8 repeat-containing protein - - - 0.00000000000005373 84.0
YYD3_k127_691192_9 TadE-like protein - - - 0.000000000004174 72.0
YYD3_k127_715618_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009923 469.0
YYD3_k127_715618_1 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 346.0
YYD3_k127_715618_10 AdP-ribose pyrophosphatase K01515 - 3.6.1.13 0.00000000000000000000000000000000000003215 150.0
YYD3_k127_715618_11 Zn peptidase K21686 - - 0.000000000000000000000000004879 118.0
YYD3_k127_715618_12 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000007998 117.0
YYD3_k127_715618_13 PFAM von Willebrand factor type A K07114 - - 0.000000000000000000004183 106.0
YYD3_k127_715618_14 iron ion homeostasis - - - 0.00000000000000000001346 105.0
YYD3_k127_715618_15 PFAM regulatory protein GntR HTH K07979 - - 0.000000000000000001162 90.0
YYD3_k127_715618_16 von Willebrand factor, type A - - - 0.0000000000000006688 91.0
YYD3_k127_715618_17 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000002415 78.0
YYD3_k127_715618_18 Belongs to the glycosyl hydrolase 26 family - - - 0.00000000000008114 81.0
YYD3_k127_715618_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 334.0
YYD3_k127_715618_20 Alternative locus ID K07052 - - 0.0000008761 60.0
YYD3_k127_715618_21 sequence-specific DNA binding - - - 0.0003288 50.0
YYD3_k127_715618_3 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005476 321.0
YYD3_k127_715618_4 Peptidase M16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 321.0
YYD3_k127_715618_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009249 320.0
YYD3_k127_715618_6 Peptidase, M16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000292 292.0
YYD3_k127_715618_7 PFAM Mur ligase K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001645 284.0
YYD3_k127_715618_8 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000001079 272.0
YYD3_k127_715618_9 PFAM ATP corrinoid adenosyltransferase BtuR CobO CobP K19221 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000576 188.0
YYD3_k127_718678_0 Bacterial protein of unknown function (DUF937) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002013 278.0
YYD3_k127_718678_1 - K07283 - - 0.00000000000000000000000000000000000000000000000000000000000000000006165 243.0
YYD3_k127_718678_2 transmembrane transport - - - 0.0000000000000000000000000000000000000000000000000000003044 204.0
YYD3_k127_718678_3 Lysin motif - - - 0.000000000000000000000000000000000000000009273 158.0
YYD3_k127_718678_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.0000000000000000000000000000000000000829 146.0
YYD3_k127_718678_5 DNA-templated transcription, initiation K03088,K07263 - - 0.00000000000000000000000000000002383 133.0
YYD3_k127_718678_6 - - - - 0.00000000000000000000001127 106.0
YYD3_k127_718678_7 Dodecin K09165 - - 0.000000000000000000001602 95.0
YYD3_k127_718910_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 512.0
YYD3_k127_718910_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 475.0
YYD3_k127_718910_10 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000004439 247.0
YYD3_k127_718910_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000745 230.0
YYD3_k127_718910_12 phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.0000000000000000000000000000000000000000000000000000004365 201.0
YYD3_k127_718910_13 PhoU domain K02039 - - 0.00000000000000000000000000000000000000000000000003121 186.0
YYD3_k127_718910_14 DNA-templated transcription, initiation - - - 0.000000000000000000000000000000000000000000000005042 188.0
YYD3_k127_718910_15 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000007378 178.0
YYD3_k127_718910_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000006491 160.0
YYD3_k127_718910_17 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000004098 160.0
YYD3_k127_718910_18 Belongs to the phosphoglycerate mutase family K15634 - 5.4.2.12 0.000000000000000000000000000000005515 136.0
YYD3_k127_718910_19 Haem-binding domain - - - 0.000000000000000000000000000000009333 132.0
YYD3_k127_718910_2 Belongs to the N(4) N(6)-methyltransferase family K00571 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006389 448.0
YYD3_k127_718910_20 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000007363 126.0
YYD3_k127_718910_21 TonB-dependent receptor - - - 0.0000000000000000000000000000007503 136.0
YYD3_k127_718910_22 protocatechuate 3,4-dioxygenase activity K00449 - 1.13.11.3 0.000000000000000000000000000001319 129.0
YYD3_k127_718910_23 Binds the 23S rRNA K02909 - - 0.00000000000000000000000000002205 119.0
YYD3_k127_718910_24 DnaJ molecular chaperone homology domain - - - 0.00000000000001278 83.0
YYD3_k127_718910_25 Periplasmic or secreted lipoprotein - - - 0.00000000004103 71.0
YYD3_k127_718910_26 - - - - 0.0000001555 64.0
YYD3_k127_718910_27 phosphorelay signal transduction system - - - 0.000004299 53.0
YYD3_k127_718910_28 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.0006317 43.0
YYD3_k127_718910_3 COG0226 ABC-type phosphate transport system periplasmic K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 448.0
YYD3_k127_718910_4 Binding-protein-dependent transport system inner membrane component K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007108 403.0
YYD3_k127_718910_5 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 401.0
YYD3_k127_718910_6 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 357.0
YYD3_k127_718910_7 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004963 342.0
YYD3_k127_718910_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 331.0
YYD3_k127_718910_9 Protein of unknown function (DUF1385) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001226 261.0
YYD3_k127_745065_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004213 284.0
YYD3_k127_745065_1 Bacterial-like globin K06886 - - 0.000000000000000000000000003678 111.0
YYD3_k127_745235_0 repeat protein - - - 2.32e-282 882.0
YYD3_k127_745235_1 peptide catabolic process - - - 3.033e-225 710.0
YYD3_k127_745235_10 Dienelactone hydrolase K01061 - 3.1.1.45 0.0004623 46.0
YYD3_k127_745235_2 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 514.0
YYD3_k127_745235_3 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001746 260.0
YYD3_k127_745235_4 Domain of unknown function (DUF305) - - - 0.00000000000000000000000000000000000000000000000000000000000000000001524 240.0
YYD3_k127_745235_5 - - - - 0.0000000000000000000000000000000000002034 147.0
YYD3_k127_745235_6 - - - - 0.000000000000000000579 95.0
YYD3_k127_745235_7 Aminoglycoside-2''-adenylyltransferase K19545 - - 0.00000000000001676 76.0
YYD3_k127_745235_8 Aminoglycoside-2''-adenylyltransferase K19545 - - 0.0000003984 57.0
YYD3_k127_745235_9 lactoylglutathione lyase activity - - - 0.000004933 49.0
YYD3_k127_762756_0 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000004639 217.0
YYD3_k127_762756_1 Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - 0.000000000000000000000009554 107.0
YYD3_k127_762756_2 Transcriptional regulatory protein, C terminal - - - 0.0000001875 59.0
YYD3_k127_774699_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1357.0
YYD3_k127_774699_1 Aldolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 368.0
YYD3_k127_774699_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 340.0
YYD3_k127_774699_3 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 317.0
YYD3_k127_774699_4 Isochorismatase family K08281 - 3.5.1.19 0.00000000000000000000000000000000000000000000000000000001031 204.0
YYD3_k127_774699_5 - - - - 0.00000000000000000000000000000000000000000000000000004216 209.0
YYD3_k127_774699_6 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000001536 146.0
YYD3_k127_774699_7 Putative adhesin - - - 0.0000001343 63.0
YYD3_k127_8043_0 PFAM Peptidase M1 membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000009266 216.0
YYD3_k127_8043_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000004739 190.0
YYD3_k127_810700_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008832 499.0
YYD3_k127_810700_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0000287,GO:0003674,GO:0003824,GO:0004799,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046385,GO:0046483,GO:0046872,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 339.0
YYD3_k127_810700_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000004645 128.0
YYD3_k127_810700_3 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000004708 123.0
YYD3_k127_810700_4 Psort location Cytoplasmic, score - - - 0.000000000000000000000002051 116.0
YYD3_k127_810700_5 response regulator - - - 0.0009721 46.0
YYD3_k127_81552_0 glutamate--cysteine ligase - - - 1.174e-235 745.0
YYD3_k127_81552_1 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 517.0
YYD3_k127_81552_2 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 294.0
YYD3_k127_81552_3 Transporter, small conductance mechanosensitive ion channel MscS family protein K03442 - - 0.000000000000000000000000000000000000000000000000000000000008555 218.0
YYD3_k127_81552_4 Bacterial regulatory proteins, tetR family K13770 - - 0.000000000000000000000000000000000000000000000003827 179.0
YYD3_k127_81552_5 cyclic nucleotide-binding K01420,K10914 - - 0.00000000000000000000000000000000000000001143 163.0
YYD3_k127_81552_6 - - - - 0.000000000000000000000000000000000000002507 164.0
YYD3_k127_81552_7 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000001218 130.0
YYD3_k127_81552_8 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain - - - 0.000000000000000000000000003091 120.0
YYD3_k127_820923_0 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000004906 268.0
YYD3_k127_820923_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004818 252.0
YYD3_k127_820923_2 PFAM ATP corrinoid adenosyltransferase BtuR CobO CobP K19221 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000003942 190.0
YYD3_k127_820923_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000009873 80.0
YYD3_k127_82855_0 COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component K09014 - - 9.561e-253 785.0
YYD3_k127_82855_1 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008264 595.0
YYD3_k127_82855_10 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004824 332.0
YYD3_k127_82855_11 PFAM Basic membrane lipoprotein K07335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 332.0
YYD3_k127_82855_12 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004945 305.0
YYD3_k127_82855_13 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009128 287.0
YYD3_k127_82855_14 PFAM monooxygenase FAD-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001392 276.0
YYD3_k127_82855_15 Phosphoribulokinase / Uridine kinase family K00855,K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.19,2.7.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000006631 257.0
YYD3_k127_82855_16 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009357 254.0
YYD3_k127_82855_17 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.000000000000000000000000000000000000000000000000000471 192.0
YYD3_k127_82855_18 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000002388 177.0
YYD3_k127_82855_19 - - - - 0.00000000000000000000000000000000000000000000000414 176.0
YYD3_k127_82855_2 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 582.0
YYD3_k127_82855_20 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 - 3.5.4.5 0.00000000000000000000000000000000000000000007966 164.0
YYD3_k127_82855_21 PFAM S23 ribosomal protein - - - 0.000000000000000000000000000000000000000004646 158.0
YYD3_k127_82855_22 Prephenate dehydratase K04518 - 4.2.1.51 0.0000000000000000000000000000000000000007926 156.0
YYD3_k127_82855_23 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000005865 135.0
YYD3_k127_82855_24 Protein of unknown function, DUF393 - - - 0.00000000000000000000000000001799 121.0
YYD3_k127_82855_25 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.00000000000000000000001001 101.0
YYD3_k127_82855_26 2 iron, 2 sulfur cluster binding - - - 0.00000000000000000000003855 104.0
YYD3_k127_82855_27 Chorismate mutase type II K14170 - 4.2.1.51,5.4.99.5 0.0000000000001938 73.0
YYD3_k127_82855_28 energy transducer activity K03832 - - 0.000001661 60.0
YYD3_k127_82855_3 ABC transporter K02056 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 535.0
YYD3_k127_82855_4 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 456.0
YYD3_k127_82855_5 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 461.0
YYD3_k127_82855_6 Large family of predicted nucleotide-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 411.0
YYD3_k127_82855_7 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 414.0
YYD3_k127_82855_8 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008616 392.0
YYD3_k127_82855_9 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 350.0
YYD3_k127_834756_0 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 575.0
YYD3_k127_834756_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0000502,GO:0002020,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009376,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019899,GO:0019904,GO:0030163,GO:0030164,GO:0030312,GO:0030554,GO:0031333,GO:0031597,GO:0032271,GO:0032272,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043254,GO:0043335,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051301,GO:0051704,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097718,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 546.0
YYD3_k127_834756_10 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000001136 53.0
YYD3_k127_834756_2 COGs COG4299 conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008962 401.0
YYD3_k127_834756_3 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 381.0
YYD3_k127_834756_4 glutamine-fructose-6-phosphate transaminase (isomerizing) activity K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 378.0
YYD3_k127_834756_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 304.0
YYD3_k127_834756_6 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000001298 247.0
YYD3_k127_834756_7 Protein of unknown function (DUF4199) - - - 0.000000000000000000000000000000000000000000000000002546 187.0
YYD3_k127_834756_8 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000189 161.0
YYD3_k127_834756_9 GYD domain - - - 0.00000000000000000000000003727 110.0
YYD3_k127_841462_0 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000007068 210.0
YYD3_k127_841462_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000102 181.0
YYD3_k127_841462_2 HAD-superfamily hydrolase, subfamily IIB - - - 0.0000000000000000000000000000000000000002314 162.0
YYD3_k127_841462_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000005883 142.0
YYD3_k127_841462_4 Tetratricopeptide repeat - - - 0.00000000000000000000006033 114.0
YYD3_k127_871138_0 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009363 362.0
YYD3_k127_871138_1 Peptidase, M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003851 256.0
YYD3_k127_871138_2 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000008732 158.0
YYD3_k127_871138_3 - - - - 0.0000000000000001452 90.0
YYD3_k127_871138_4 Putative adhesin - - - 0.000002242 58.0
YYD3_k127_87734_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000494 584.0
YYD3_k127_87734_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K13810 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 295.0
YYD3_k127_87734_2 Hemerythrin HHE cation binding K07322 - - 0.0000000000000000000000000000000000000000000000000000003646 199.0
YYD3_k127_87734_3 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000838 156.0
YYD3_k127_87734_4 nitrite reductase [NAD(P)H] activity K05710 - - 0.000000000000000000000001328 106.0
YYD3_k127_879049_0 Beta propeller domain - - - 2.872e-205 661.0
YYD3_k127_879049_1 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 291.0
YYD3_k127_879049_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000011 235.0
YYD3_k127_879049_3 Belongs to the aspartate glutamate racemases family K01779 - 5.1.1.13 0.0000000000000000000000000000000000000000000000000000000000001186 220.0
YYD3_k127_879049_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000001486 197.0
YYD3_k127_879049_5 Lysin motif - - - 0.000000000000000000000000000000000000005271 151.0
YYD3_k127_892428_0 Actin K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002504 263.0
YYD3_k127_892428_1 PFAM thioesterase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000000000000008171 214.0
YYD3_k127_892428_2 PFAM Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000003026 212.0
YYD3_k127_892428_3 Histidine kinase K07683 - 2.7.13.3 0.000000000000000000000000000000000001214 148.0
YYD3_k127_892428_4 Histidine kinase - - - 0.000000000000000000000000000394 124.0
YYD3_k127_892428_5 cheY-homologous receiver domain - - - 0.0000000000000001634 86.0
YYD3_k127_892887_0 MatE - - - 7.632e-217 681.0
YYD3_k127_892887_1 nuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009222 364.0
YYD3_k127_892887_11 Redoxin - - - 0.00000000001418 70.0
YYD3_k127_892887_13 transcriptional regulator - - - 0.00001289 53.0
YYD3_k127_892887_14 IrrE N-terminal-like domain K01486 - 3.5.4.2 0.0001855 52.0
YYD3_k127_892887_2 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 327.0
YYD3_k127_892887_3 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 310.0
YYD3_k127_892887_4 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001707 265.0
YYD3_k127_892887_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000000000000000000000005505 225.0
YYD3_k127_892887_6 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000000000000251 211.0
YYD3_k127_892887_7 - - - - 0.0000000000000000000000000000000000000000000000001718 181.0
YYD3_k127_892887_8 Glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.0000000000000000000000000000000000000000000000009368 177.0
YYD3_k127_892887_9 Protein of unknown function (DUF1428) K01077 - 3.1.3.1 0.0000000000000000000000000000000000000000002152 160.0
YYD3_k127_916026_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000661 630.0
YYD3_k127_916026_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008869 619.0
YYD3_k127_916026_10 Nucleotidyl transferase K00966,K16881 - 2.7.7.13,5.4.2.8 0.000000000000000000000000000000000000000000000000001996 194.0
YYD3_k127_916026_11 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.00000000000000000000000000000000000000005937 163.0
YYD3_k127_916026_12 PFAM aminoglycoside phosphotransferase K07102 - 2.7.1.221 0.0000000000000000000000000000000000004703 155.0
YYD3_k127_916026_14 RESPONSE REGULATOR receiver - - - 0.000000000864 64.0
YYD3_k127_916026_15 endonuclease exonuclease phosphatase - - - 0.00000008425 63.0
YYD3_k127_916026_2 class II (D K K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 553.0
YYD3_k127_916026_3 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 466.0
YYD3_k127_916026_4 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 372.0
YYD3_k127_916026_5 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002051 277.0
YYD3_k127_916026_6 Hydrolase, TatD family K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002753 256.0
YYD3_k127_916026_7 GTP cyclohydrolase I K00950,K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006082,GO:0006139,GO:0006575,GO:0006725,GO:0006729,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008616,GO:0009058,GO:0009108,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0019752,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0042455,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901657,GO:1901659 2.7.6.3,3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000001753 239.0
YYD3_k127_916026_8 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000005333 222.0
YYD3_k127_916026_9 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000109 207.0
YYD3_k127_920159_0 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 351.0
YYD3_k127_920159_1 Methyltransferase domain - - - 0.00000000000000000000000000000001969 138.0
YYD3_k127_920159_2 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000006243 120.0
YYD3_k127_920159_3 glycoside hydrolase, family - - - 0.00000000000000000146 102.0
YYD3_k127_920159_4 PFAM NHL repeat containing protein K13735 - - 0.00000000000001002 89.0
YYD3_k127_920159_6 Alpha-L-rhamnosidase - - - 0.000000000007523 79.0
YYD3_k127_920739_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004891 416.0
YYD3_k127_920739_1 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008203 351.0
YYD3_k127_920739_2 Protein of unknown function (DUF1569) - - - 0.00000000000000000000000005863 112.0
YYD3_k127_920739_3 - - - - 0.0000000000000000000001725 102.0
YYD3_k127_920739_4 - - - - 0.00005403 47.0
YYD3_k127_921260_0 Cyclomaltodextrinase, N-terminal K21575 - 3.2.1.135 1.061e-199 640.0
YYD3_k127_921260_1 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 559.0
YYD3_k127_921260_2 Cyclomaltodextrinase, N-terminal K21575 - 3.2.1.135 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 532.0
YYD3_k127_921260_3 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 499.0
YYD3_k127_921260_4 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001839 240.0
YYD3_k127_921260_5 ROK family - - - 0.000000000000000000000000000000000000000000000000000000000000000000496 243.0
YYD3_k127_921260_6 TPR repeat - - - 0.00000000000000000000000000000000000000000001004 182.0
YYD3_k127_926137_0 ATP-dependent helicase nuclease subunit A K16898 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000004391 241.0
YYD3_k127_926137_1 The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination K16899 - 3.6.4.12 0.000000000000000000000000000000000001426 160.0
YYD3_k127_929132_0 ThiC-associated domain K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 4.486e-309 959.0
YYD3_k127_929132_1 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004824 615.0
YYD3_k127_929132_2 PFAM Amidohydrolase 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 366.0
YYD3_k127_929132_3 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 325.0
YYD3_k127_929132_4 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 326.0
YYD3_k127_929132_5 oxidoreductase activity K00274 - 1.4.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000189 288.0
YYD3_k127_929132_6 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002058 274.0
YYD3_k127_929132_7 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000001399 175.0
YYD3_k127_929132_8 SnoaL-like domain - - - 0.0000005358 58.0
YYD3_k127_935055_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.691e-251 785.0
YYD3_k127_935055_1 PFAM Fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 382.0
YYD3_k127_935055_2 Transcriptional regulator, Crp Fnr family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 303.0
YYD3_k127_935055_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000002148 137.0
YYD3_k127_935055_4 cheY-homologous receiver domain - - - 0.0002768 48.0
YYD3_k127_953052_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 2.295e-292 922.0
YYD3_k127_953052_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.458e-278 868.0
YYD3_k127_953052_10 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 396.0
YYD3_k127_953052_11 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 384.0
YYD3_k127_953052_12 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 360.0
YYD3_k127_953052_13 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008575 350.0
YYD3_k127_953052_14 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 331.0
YYD3_k127_953052_15 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 314.0
YYD3_k127_953052_16 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 321.0
YYD3_k127_953052_17 Required for morphogenesis under gluconeogenic growth conditions - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 316.0
YYD3_k127_953052_18 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 297.0
YYD3_k127_953052_19 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K22024 - 1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 293.0
YYD3_k127_953052_2 Peptidase S46 - - - 5.127e-228 729.0
YYD3_k127_953052_20 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001424 290.0
YYD3_k127_953052_21 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000142 234.0
YYD3_k127_953052_22 ZIP Zinc transporter K07238,K11021,K16267 - - 0.0000000000000000000000000000000000000000000000000000000000005214 220.0
YYD3_k127_953052_23 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000005363 219.0
YYD3_k127_953052_24 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000008625 202.0
YYD3_k127_953052_25 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000002063 194.0
YYD3_k127_953052_26 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000002169 183.0
YYD3_k127_953052_27 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000000000003767 173.0
YYD3_k127_953052_28 LemA family K03744 - - 0.000000000000000000000000000000000000000000003008 174.0
YYD3_k127_953052_29 PFAM Roadblock LC7 family protein - - - 0.00000000000000000000000000000000000000000003404 167.0
YYD3_k127_953052_3 PFAM UvrD REP helicase K03657 - 3.6.4.12 1.226e-217 700.0
YYD3_k127_953052_30 Peptidase M56 - - - 0.0000000000000000000000000000000000000004836 162.0
YYD3_k127_953052_31 nucleotidyltransferase activity - - - 0.00000000000000000000000000000000004891 143.0
YYD3_k127_953052_32 BMC K04027 - - 0.0000000000000000000000000000000001892 133.0
YYD3_k127_953052_33 response regulator - - - 0.000000000000000000000000000000000577 145.0
YYD3_k127_953052_34 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000000003067 138.0
YYD3_k127_953052_35 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028,K08697 - - 0.000000000000000000000000001419 113.0
YYD3_k127_953052_36 TPM domain K06872 - - 0.00000000000000000000000001921 120.0
YYD3_k127_953052_37 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.000000000000000000000005348 103.0
YYD3_k127_953052_38 Hfq protein - - - 0.0000000000000000000001529 102.0
YYD3_k127_953052_39 response regulator, receiver - - - 0.00000000000000007036 86.0
YYD3_k127_953052_4 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 531.0
YYD3_k127_953052_40 methyltransferase - - - 0.0000000000000001015 89.0
YYD3_k127_953052_41 TIGRFAM ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.00000000000002974 80.0
YYD3_k127_953052_42 Belongs to the UPF0761 family K07058 - - 0.0000000000002181 81.0
YYD3_k127_953052_43 Cell division protein FtsQ K03589 - - 0.000000000001112 78.0
YYD3_k127_953052_44 Ethanolamine utilisation protein EutN/carboxysome K04028 - - 0.000000001079 63.0
YYD3_k127_953052_45 Tetratricopeptide repeat - - - 0.0000002279 62.0
YYD3_k127_953052_46 Type II secretion system (T2SS), protein G K02456 - - 0.00007286 54.0
YYD3_k127_953052_47 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic - - - 0.0001298 49.0
YYD3_k127_953052_5 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 482.0
YYD3_k127_953052_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 437.0
YYD3_k127_953052_7 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 418.0
YYD3_k127_953052_8 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 GO:0000270,GO:0000271,GO:0003674,GO:0003824,GO:0003977,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0030203,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 404.0
YYD3_k127_953052_9 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 404.0
YYD3_k127_953607_0 Type IV pilus assembly protein PilM; K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008748 321.0
YYD3_k127_953607_1 maltose O-acetyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001497 247.0
YYD3_k127_953607_2 TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000517 229.0
YYD3_k127_953607_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000003599 176.0
YYD3_k127_953607_4 serine-type endopeptidase activity K14645,K20276 - - 0.00000000000000000000000000000007514 135.0
YYD3_k127_953607_5 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000005317 99.0
YYD3_k127_953607_7 PFAM Pilus assembly protein PilO K02664 - - 0.0000003182 60.0
YYD3_k127_960046_0 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 309.0
YYD3_k127_960046_1 RNA 2'-O ribose methyltransferase substrate binding K03218 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000004122 244.0
YYD3_k127_960046_2 Histidine kinase K08082 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000006387 214.0
YYD3_k127_961353_0 metallocarboxypeptidase activity K14054 - - 1.189e-280 895.0
YYD3_k127_961353_1 DEAD DEAH box helicase K03724 - - 1.622e-206 651.0
YYD3_k127_961353_2 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 478.0
YYD3_k127_961353_3 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000003992 225.0
YYD3_k127_961353_4 Belongs to the UPF0502 family K09915 - - 0.0000000000000000000000000000000000000000000000000000000003706 209.0