logo

Overview

ID MAG04648
Name YYD3_bin.19
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Polarisedimenticolia
Order Polarisedimenticolales
Family DASRJG01
Genus DASVAW01
Species DASVAW01 sp036376135
Assembly information
Completeness (%) 64.45
Contamination (%) 0.51
GC content (%) 71.0
N50 (bp) 8,023
Genome size (bp) 3,182,636

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2776

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1007176_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 3.074e-234 758.0
YYD3_k127_1007176_1 Polysulphide reductase, NrfD K00185 - - 3.375e-209 660.0
YYD3_k127_1007176_10 PFAM regulatory protein LuxR - - - 0.00000000000000000000000000000000000000000000000000000000000004798 245.0
YYD3_k127_1007176_11 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000304 203.0
YYD3_k127_1007176_12 - - - - 0.00000000000000000000000000000000000000000000007967 183.0
YYD3_k127_1007176_13 - - - - 0.000000000000000000000000000000000000005903 158.0
YYD3_k127_1007176_14 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000005521 141.0
YYD3_k127_1007176_15 DNA alkylation repair enzyme - - - 0.00000000000000000000000268 110.0
YYD3_k127_1007176_16 cheY-homologous receiver domain - - - 0.00000000000000000002014 98.0
YYD3_k127_1007176_17 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.0000000000000000002722 104.0
YYD3_k127_1007176_18 bacterial-type flagellum-dependent cell motility K01317 - 3.4.21.10 0.0002581 55.0
YYD3_k127_1007176_2 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 615.0
YYD3_k127_1007176_3 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 509.0
YYD3_k127_1007176_4 PFAM Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 459.0
YYD3_k127_1007176_5 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 425.0
YYD3_k127_1007176_6 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559 437.0
YYD3_k127_1007176_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 396.0
YYD3_k127_1007176_8 TrkA-N domain protein K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 327.0
YYD3_k127_1007176_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004322 285.0
YYD3_k127_1010773_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000005557 253.0
YYD3_k127_1010773_1 HD domain - - - 0.00000000000000000000000000000000000000163 167.0
YYD3_k127_1010773_2 nuclease (RecB family) - - - 0.000000000000000001312 100.0
YYD3_k127_1014972_0 amine dehydrogenase activity - - - 7.854e-215 693.0
YYD3_k127_1014972_1 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000574 127.0
YYD3_k127_1014972_2 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000005323 64.0
YYD3_k127_1020399_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703,K20452 - 4.2.1.33,4.2.1.35,4.2.1.85 0.00000000000000000000000000000000000000000000000000000000000000004555 248.0
YYD3_k127_1020399_1 Cysteine dioxygenase type I - - - 0.0000000000000000000000000000000003509 139.0
YYD3_k127_1020399_2 Oxidoreductase molybdopterin binding K00387 - 1.8.3.1 0.000000000000000000000000000002451 128.0
YYD3_k127_1020399_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000001647 94.0
YYD3_k127_10376_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003738 284.0
YYD3_k127_10376_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000003385 289.0
YYD3_k127_10376_2 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000003359 205.0
YYD3_k127_10376_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000001262 195.0
YYD3_k127_10376_4 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000002683 168.0
YYD3_k127_10376_5 Sporulation and spore germination - - - 0.0000000000000002878 93.0
YYD3_k127_10376_6 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.00007233 49.0
YYD3_k127_1046239_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 311.0
YYD3_k127_1046239_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002757 273.0
YYD3_k127_1046239_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07025 - - 0.00000000000000000000000000006048 128.0
YYD3_k127_1046239_3 BON domain - - - 0.000000000000000000003302 98.0
YYD3_k127_1046239_4 diguanylate cyclase activity K02000,K04767,K05847,K07168,K09137 - 3.6.3.32 0.000000000000000000451 92.0
YYD3_k127_1046239_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000005769 87.0
YYD3_k127_1046239_6 Peptidase M1 membrane alanine aminopeptidase - - - 0.000001193 61.0
YYD3_k127_1100306_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 492.0
YYD3_k127_1100306_1 ATPase with chaperone activity K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 472.0
YYD3_k127_1100306_2 Transglycosylase SLT domain K08307,K12204 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 308.0
YYD3_k127_1100306_3 Anthranilate synthase component I, N terminal region K01657,K01665 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000003056 178.0
YYD3_k127_1100306_4 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00826 - 2.6.1.42 0.0000000000000000000000000003283 129.0
YYD3_k127_1105295_0 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000001043 156.0
YYD3_k127_1105295_1 NmrA-like family - - - 0.0000000000000000000000000000000000006936 160.0
YYD3_k127_1105295_2 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000007492 153.0
YYD3_k127_1108501_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.52e-271 874.0
YYD3_k127_1108501_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 8.195e-238 743.0
YYD3_k127_1108501_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001001 266.0
YYD3_k127_1108501_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000001307 218.0
YYD3_k127_1108501_4 Receptor family ligand binding region - - - 0.00000000000000000000000000009842 132.0
YYD3_k127_1108501_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000009663 114.0
YYD3_k127_1108501_6 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000003487 98.0
YYD3_k127_1119965_0 PFAM peptidase M61 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 574.0
YYD3_k127_1119965_1 Belongs to the carbamate kinase family K00926 - 2.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 391.0
YYD3_k127_1119965_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464 310.0
YYD3_k127_113684_0 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636 511.0
YYD3_k127_113684_1 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000004045 133.0
YYD3_k127_113684_2 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.00000000000000000000001206 110.0
YYD3_k127_1152322_0 Peptidase family M20/M25/M40 K01270 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 456.0
YYD3_k127_1152322_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 340.0
YYD3_k127_1152322_2 MoaC family K03637 - 4.6.1.17 0.00000000000000000000000000000000000000003499 165.0
YYD3_k127_1152322_3 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.00000000000000000000000000000001038 139.0
YYD3_k127_1152322_4 translation initiation factor activity K03699 - - 0.0000000000000000000000006011 113.0
YYD3_k127_1152322_5 transposition, DNA-mediated K02342 - 2.7.7.7 0.0000000000000000000136 102.0
YYD3_k127_1152322_6 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000001116 81.0
YYD3_k127_1152322_7 Mo-molybdopterin cofactor metabolic process K03753,K07588 - - 0.0000271 53.0
YYD3_k127_1163054_0 PFAM peptidase T2 asparaginase 2 K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000001972 263.0
YYD3_k127_1163054_1 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000001056 198.0
YYD3_k127_1163054_2 Small GTP-binding protein K06883 - - 0.000000000000000000000000000000000000004375 168.0
YYD3_k127_1163054_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000002313 137.0
YYD3_k127_1163054_4 Response regulator receiver K02483,K07658,K07668 - - 0.0000000000000000000000000000000558 131.0
YYD3_k127_1163054_5 Histidine kinase A domain protein - - - 0.0000000000000000000000000001092 134.0
YYD3_k127_1163054_6 PFAM Sulfate transporter antisigma-factor antagonist STAS K04749,K04757 - 2.7.11.1 0.00000000000000003325 91.0
YYD3_k127_1163054_7 Histidine kinase K02668 - 2.7.13.3 0.0000000000008397 79.0
YYD3_k127_1163054_8 CAAX protease self-immunity K07052 - - 0.000221 54.0
YYD3_k127_1163054_9 antisigma factor binding K04749 - - 0.0003856 53.0
YYD3_k127_1173261_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 3.198e-265 841.0
YYD3_k127_1173261_1 Dehydrogenase E1 component K00161,K00166,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005113 291.0
YYD3_k127_1173261_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000596 226.0
YYD3_k127_1173261_3 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0000166,GO:0003674,GO:0003824,GO:0004148,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0009987,GO:0015036,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0016667,GO:0016668,GO:0019725,GO:0019899,GO:0032991,GO:0035375,GO:0036094,GO:0040007,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045254,GO:0045454,GO:0048037,GO:0050660,GO:0050662,GO:0050789,GO:0050794,GO:0051287,GO:0055114,GO:0065007,GO:0065008,GO:0070404,GO:0071944,GO:0097159,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.8.1.4 0.000000000405 62.0
YYD3_k127_1185332_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 481.0
YYD3_k127_1185332_1 Part of a membrane complex involved in electron transport K03615 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 475.0
YYD3_k127_1185332_2 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00171,K00172,K02573,K03737,K13795,K18930 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 392.0
YYD3_k127_1185332_3 Part of a membrane complex involved in electron transport K03614 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001024 297.0
YYD3_k127_1185332_4 Part of a membrane complex involved in electron transport K03617 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000671 271.0
YYD3_k127_1185332_5 Part of a membrane complex involved in electron transport K03613 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005933 245.0
YYD3_k127_1185332_6 Part of a membrane complex involved in electron transport - - - 0.000000000000000000000000000000000000000002037 164.0
YYD3_k127_1185332_7 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000806 160.0
YYD3_k127_1194167_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 1.244e-300 932.0
YYD3_k127_1194167_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005143 280.0
YYD3_k127_1194167_2 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000001153 167.0
YYD3_k127_1194167_3 RNA recognition motif - - - 0.0000000000000000000000000000001146 126.0
YYD3_k127_1194167_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000009017 128.0
YYD3_k127_1204435_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009358 475.0
YYD3_k127_1204435_1 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 448.0
YYD3_k127_1204435_2 peptidoglycan glycosyltransferase activity K05837 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008360,GO:0016020,GO:0022603,GO:0022604,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000636 272.0
YYD3_k127_1204435_3 Involved in formation and maintenance of cell shape K03570 - - 0.00000000001729 66.0
YYD3_k127_1214229_0 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 292.0
YYD3_k127_1214229_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007546 290.0
YYD3_k127_1214229_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000577 273.0
YYD3_k127_1214229_3 Flavin containing amine oxidoreductase K06955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003231 267.0
YYD3_k127_1214229_4 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000003037 205.0
YYD3_k127_1214229_5 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000006626 170.0
YYD3_k127_1222449_0 Peptidase S46 - - - 5.437e-225 716.0
YYD3_k127_1222449_1 Sulfate permease family K03321 - - 6.424e-212 672.0
YYD3_k127_1222449_2 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 448.0
YYD3_k127_1222449_3 NUDIX domain K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003276 273.0
YYD3_k127_1222449_4 hydrolase of the alpha beta superfamily K07018 - - 0.0000000000000000000000000000000000009195 148.0
YYD3_k127_1222449_5 Ferredoxin - - - 0.0000000000000000000000000000000001049 147.0
YYD3_k127_1222449_6 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000001614 137.0
YYD3_k127_1222449_7 COG0568 DNA-directed RNA polymerase, sigma subunit K03087 GO:0000988,GO:0000990,GO:0001000,GO:0001121,GO:0001123,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000003188 111.0
YYD3_k127_1234173_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 1.028e-201 663.0
YYD3_k127_1234173_1 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 564.0
YYD3_k127_1234173_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000001628 206.0
YYD3_k127_1234173_3 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000004627 106.0
YYD3_k127_1243782_0 TIGRFAM addiction module toxin, Txe YoeB family K19158 - - 0.00000000000000000000000000000000002324 139.0
YYD3_k127_1243782_2 Antitoxin component of a toxin-antitoxin (TA) module K19159 - - 0.000000000000000000005536 96.0
YYD3_k127_1243782_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000003013 63.0
YYD3_k127_1253875_0 Glycosyltransferase Family 4 - - - 0.0 1185.0
YYD3_k127_1253875_1 Spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000003067 205.0
YYD3_k127_1253875_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000006953 206.0
YYD3_k127_1261434_0 Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 502.0
YYD3_k127_1261434_1 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 368.0
YYD3_k127_1261434_2 Outer membrane receptor K02014,K16087 - - 0.00000000000000000000000000000000000003457 164.0
YYD3_k127_1261434_3 lipolytic protein G-D-S-L family K05970 - 3.1.1.53 0.000000000000000000000000000000000165 153.0
YYD3_k127_1261434_5 Thrombospondin type 3 repeat - - - 0.000048 57.0
YYD3_k127_1269596_0 Acyclic terpene utilisation family protein AtuA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 599.0
YYD3_k127_1269596_1 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 449.0
YYD3_k127_1269596_10 Transcriptional regulator - - - 0.00000000000000000000000002047 118.0
YYD3_k127_1269596_11 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000007352 113.0
YYD3_k127_1269596_12 penicillin amidase K01434 - 3.5.1.11 0.00000000000000001384 87.0
YYD3_k127_1269596_2 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003434 335.0
YYD3_k127_1269596_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 343.0
YYD3_k127_1269596_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 296.0
YYD3_k127_1269596_5 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000002863 250.0
YYD3_k127_1269596_6 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000005043 216.0
YYD3_k127_1269596_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0031224,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.41,2.7.8.5 0.000000000000000000000000000004904 138.0
YYD3_k127_1269596_9 - - - - 0.000000000000000000000000001204 132.0
YYD3_k127_1280985_0 aconitate hydratase K01681 - 4.2.1.3 5.536e-315 983.0
YYD3_k127_1280985_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 4.29e-264 841.0
YYD3_k127_1280985_2 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 354.0
YYD3_k127_1280985_3 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006689 344.0
YYD3_k127_1280985_4 Protein of unknown function (DUF3641) - - - 0.000000000000000000000000000000000000000000000000000001994 197.0
YYD3_k127_1280985_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000002775 176.0
YYD3_k127_1280985_7 Protein of unknown function (DUF2752) - - - 0.00000000000000000000003592 108.0
YYD3_k127_1280985_8 response to antibiotic - - - 0.00000000000000000002759 95.0
YYD3_k127_130106_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 606.0
YYD3_k127_130106_1 ABC transporter K06022,K06158,K10834 - 3.6.3.29,3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 537.0
YYD3_k127_130106_2 Phospholipase D. Active site motifs. K06131 - - 0.000000000000000000000000000000000000000000000000000000007199 217.0
YYD3_k127_130106_3 ABC-2 family transporter protein K01992 - - 0.00000000000000000007185 92.0
YYD3_k127_1325084_0 Histidine kinase K02480,K07683 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 579.0
YYD3_k127_1325084_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009271 353.0
YYD3_k127_1325084_10 Transglycosylase associated protein - - - 0.0000000000000000001554 97.0
YYD3_k127_1325084_11 transposition, DNA-mediated K02342 - 2.7.7.7 0.0000000000000000007692 99.0
YYD3_k127_1325084_2 NADPH-dependent FMN reductase K19784 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 312.0
YYD3_k127_1325084_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001056 272.0
YYD3_k127_1325084_4 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000062 228.0
YYD3_k127_1325084_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000006323 192.0
YYD3_k127_1325084_6 Domain of unknown function (DUF3597) - - - 0.0000000000000000000000000000000000000000003401 183.0
YYD3_k127_1325084_7 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000000000211 140.0
YYD3_k127_1325084_8 Domain of unknown function (DUF3597) - - - 0.000000000000000000000000003218 123.0
YYD3_k127_1325084_9 response regulator K02282 - - 0.0000000000000000000000008892 109.0
YYD3_k127_134382_0 PFAM acyl-CoA dehydrogenase domain protein K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 502.0
YYD3_k127_134382_1 Catalyzes the phosphorylation of D-glycero-D-manno- heptose 7-phosphate at the C-1 position to selectively form D- glycero-beta-D-manno-heptose-1,7-bisphosphate K03272 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 394.0
YYD3_k127_134382_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006248 394.0
YYD3_k127_134382_3 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000009966 201.0
YYD3_k127_134382_4 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000009519 207.0
YYD3_k127_134382_5 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000001565 187.0
YYD3_k127_134382_6 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000002668 167.0
YYD3_k127_134382_8 - - - - 0.00006319 49.0
YYD3_k127_1347567_0 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000209 215.0
YYD3_k127_1347567_1 oligosaccharyl transferase activity K07151 - 2.4.99.18 0.0000000000003138 81.0
YYD3_k127_1347567_2 Thrombospondin C-terminal region K04659 - - 0.000000000003357 79.0
YYD3_k127_1355455_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031420,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 547.0
YYD3_k127_1355455_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008087 543.0
YYD3_k127_1355455_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.000000000000000000000000000000000000000000000001045 181.0
YYD3_k127_1355455_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000001535 91.0
YYD3_k127_1357601_0 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000007419 263.0
YYD3_k127_1357601_1 DoxX K15977 - - 0.0000000000000000000000000000000000000114 147.0
YYD3_k127_1357601_2 MarR family transcriptional K15973 - - 0.00000000000000000000000000000000000002027 154.0
YYD3_k127_1357601_3 MatE - - - 0.00000000000000000008369 105.0
YYD3_k127_14019_0 Male sterility protein K15891 - 1.1.1.354 0.00000000000000000000000000000000000000000000000000000000000000003799 233.0
YYD3_k127_14019_1 PFAM Integral membrane protein DUF92 - GO:0005575,GO:0016020 - 0.00000000000000000000000000000000000000000004244 178.0
YYD3_k127_14019_2 Hsp20/alpha crystallin family K13993 - - 0.00000000000000000000000141 108.0
YYD3_k127_14019_3 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids K17105 - 2.5.1.42 0.0000000000000004205 92.0
YYD3_k127_14019_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000009979 83.0
YYD3_k127_1408433_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 4.018e-196 619.0
YYD3_k127_1408433_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 432.0
YYD3_k127_1408433_2 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000005912 244.0
YYD3_k127_1408433_3 Polymer-forming cytoskeletal - - - 0.000000000000358 78.0
YYD3_k127_14197_0 Metal-dependent phosphohydrolase K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006529 379.0
YYD3_k127_14197_1 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000332 243.0
YYD3_k127_14197_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000002068 108.0
YYD3_k127_1428643_0 CoA binding domain K06929 - - 0.0000000000000001263 95.0
YYD3_k127_1428643_1 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000005716 76.0
YYD3_k127_1428643_2 Periplasmic component of the Tol biopolymer transport system - - - 0.00005645 57.0
YYD3_k127_1437384_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 8.819e-296 932.0
YYD3_k127_1437384_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 4.806e-223 698.0
YYD3_k127_1437384_2 Transcriptional regulatory protein, C terminal K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005859 311.0
YYD3_k127_1470174_0 Lysin motif - - - 0.00000000000000000000000000000000002162 151.0
YYD3_k127_1470174_1 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000008478 138.0
YYD3_k127_1470174_2 - - - - 0.00000005633 63.0
YYD3_k127_1470174_3 Transcriptional regulatory protein, C terminal K02483,K07672 - - 0.0000001673 64.0
YYD3_k127_1470174_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0001076 54.0
YYD3_k127_1475912_0 Berberine and berberine like - - - 4.337e-214 679.0
YYD3_k127_1475912_1 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 420.0
YYD3_k127_1475912_2 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005698 376.0
YYD3_k127_1475912_3 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 376.0
YYD3_k127_1475912_4 Esterase-like activity of phytase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000003051 238.0
YYD3_k127_1475912_5 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000003041 189.0
YYD3_k127_1475912_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.000000000000000000001597 98.0
YYD3_k127_1481455_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003254 304.0
YYD3_k127_1481455_1 Asparaginase K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007009 277.0
YYD3_k127_1481455_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000001659 270.0
YYD3_k127_1513999_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 528.0
YYD3_k127_1513999_1 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001494 271.0
YYD3_k127_1513999_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000004666 241.0
YYD3_k127_151678_0 Sodium:neurotransmitter symporter family - - - 1.817e-194 621.0
YYD3_k127_151678_1 phosphorelay signal transduction system K14987 - - 0.0000000000000000000000000000000000000000000000000000000000000008865 224.0
YYD3_k127_151678_2 - - - - 0.00000000000000000000000000000000000000000000000003379 186.0
YYD3_k127_151678_3 Histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000004379 197.0
YYD3_k127_151678_4 Tetratricopeptide repeat - - - 0.0000000000000000000002499 113.0
YYD3_k127_151678_5 helix_turn_helix, Lux Regulon - - - 0.000000000000000000004871 99.0
YYD3_k127_151678_6 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.000000000000001834 83.0
YYD3_k127_151678_7 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000001198 65.0
YYD3_k127_1537532_0 BAAT / Acyl-CoA thioester hydrolase C terminal K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 468.0
YYD3_k127_1537532_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 426.0
YYD3_k127_1537532_2 methyltransferase activity K21310 - 2.1.1.334 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 328.0
YYD3_k127_1537532_3 Belongs to the aspartate glutamate racemases family K01779 - 5.1.1.13 0.000000000000000000000000000000000000000000000000000193 187.0
YYD3_k127_1537532_4 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000003241 128.0
YYD3_k127_1537532_5 Protein of unknown function (DUF3500) - - - 0.0000000000000000000004599 96.0
YYD3_k127_1537532_6 - - - - 0.00000000003004 74.0
YYD3_k127_1538782_0 Protein of unknown function (DUF1573) - - - 0.000000000007994 76.0
YYD3_k127_1538782_1 Cytochrome C oxidase, cbb3-type, subunit III K00406,K03889 - - 0.000000085 63.0
YYD3_k127_1538782_2 - - - - 0.0000002608 61.0
YYD3_k127_1546129_0 - - - - 0.000000000000000000000000000343 119.0
YYD3_k127_1546129_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000001156 98.0
YYD3_k127_1546129_2 Domain of unknown function (DUF4252) - - - 0.000000003011 69.0
YYD3_k127_1547129_0 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 298.0
YYD3_k127_1547129_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.000000000000000000000000000000000000001576 170.0
YYD3_k127_1547129_2 The glycine cleavage system catalyzes the degradation of glycine K00605,K06980,K22086 - 1.5.99.5,2.1.2.10 0.00000000000000000000000175 107.0
YYD3_k127_1547129_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000005975 75.0
YYD3_k127_1567192_0 Zn_pept - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005927 327.0
YYD3_k127_1567192_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 301.0
YYD3_k127_1567192_10 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000001051 115.0
YYD3_k127_1567192_11 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000002057 79.0
YYD3_k127_1567192_12 Prepilin-type N-terminal cleavage methylation domain K02456,K02650 - - 0.000000006733 67.0
YYD3_k127_1567192_2 Domain of unknown function (DUF4188) - - - 0.00000000000000000000000000000000000000000000000002654 189.0
YYD3_k127_1567192_3 Amidinotransferase K01482 - 3.5.3.18 0.0000000000000000000000000000000000000000000001457 173.0
YYD3_k127_1567192_4 - - - - 0.0000000000000000000000000000000000000000000006729 179.0
YYD3_k127_1567192_5 oxidation-reduction process - - - 0.00000000000000000000000000000000000000000002803 166.0
YYD3_k127_1567192_6 Oxidoreductase FAD-binding domain - - - 0.00000000000000000000000000000000000000000035 177.0
YYD3_k127_1567192_7 Cupin domain - - - 0.00000000000000000000000000000000000001622 154.0
YYD3_k127_1567192_8 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000001355 139.0
YYD3_k127_1567192_9 Ndr family - - - 0.00000000000000000000000000003064 134.0
YYD3_k127_1573011_0 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01354 - 3.4.21.83 6.933e-201 646.0
YYD3_k127_1573011_1 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 359.0
YYD3_k127_1573011_2 hemolysin iii K11068 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000002207 232.0
YYD3_k127_1573011_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000004738 246.0
YYD3_k127_1573011_4 - - - - 0.000000000000000000000000000000000000008595 158.0
YYD3_k127_1573011_5 AAA-like domain - - - 0.0000000000000000000000000000000002253 139.0
YYD3_k127_1604282_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 421.0
YYD3_k127_1604282_1 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 327.0
YYD3_k127_1604282_2 von Willebrand factor (vWF) type A domain K07114,K12511 - - 0.0000000000000000000000000000000000000000000000000000000000006272 240.0
YYD3_k127_1604282_3 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000000000000000000000000000008676 214.0
YYD3_k127_1604282_4 Oxygen tolerance - - - 0.000000000000000000000000000000000000000000006012 188.0
YYD3_k127_1604282_5 Bacterial SH3 domain - - - 0.000000007412 69.0
YYD3_k127_1604282_6 Tetratricopeptide repeat - - - 0.0000006816 63.0
YYD3_k127_1604282_7 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000114 52.0
YYD3_k127_1604282_8 Psort location CytoplasmicMembrane, score - - - 0.0008761 50.0
YYD3_k127_1606024_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 571.0
YYD3_k127_1606024_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 312.0
YYD3_k127_1606024_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000000000000000000000000001277 175.0
YYD3_k127_1606024_3 protein kinase activity - - - 0.00000000000000000000000000000000000000000004639 178.0
YYD3_k127_1606024_4 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000005552 138.0
YYD3_k127_1606024_5 - - - - 0.000000000000000001305 90.0
YYD3_k127_1612667_0 Pfam:UPF0118 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009437 253.0
YYD3_k127_1612667_1 AsmA family - - - 0.0000000000000000000000000000006116 143.0
YYD3_k127_1612667_2 Belongs to the ompA family - - - 0.00000000006932 70.0
YYD3_k127_1613895_0 cAMP biosynthetic process K08884,K12132 - 2.7.11.1 0.000000000000000009883 99.0
YYD3_k127_1613895_1 IgA Peptidase M64 - - - 0.00000000004066 76.0
YYD3_k127_1613895_2 - - - - 0.000004427 54.0
YYD3_k127_163345_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 529.0
YYD3_k127_163345_1 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 511.0
YYD3_k127_163345_10 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000000003222 134.0
YYD3_k127_163345_12 AMP binding - - - 0.0000000000000000000001225 106.0
YYD3_k127_163345_14 Plasmid stability protein K21495 - - 0.000009665 58.0
YYD3_k127_163345_2 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007567 409.0
YYD3_k127_163345_3 Putative neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 357.0
YYD3_k127_163345_4 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005401 362.0
YYD3_k127_163345_5 Phage integrase, N-terminal SAM-like domain K03733,K04763 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006042 285.0
YYD3_k127_163345_6 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000006911 252.0
YYD3_k127_163345_7 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000008325 238.0
YYD3_k127_163345_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K20444 - - 0.0000000000000000000000000000000000000000000000000005296 199.0
YYD3_k127_163345_9 Esterase of the alpha-beta hydrolase superfamily - - - 0.00000000000000000000000000000000663 133.0
YYD3_k127_1635128_0 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000004126 237.0
YYD3_k127_1635128_1 ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000001442 199.0
YYD3_k127_1635128_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000248 194.0
YYD3_k127_1635128_3 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000002343 171.0
YYD3_k127_1635128_4 Belongs to the ClpA ClpB family K03696 - - 0.0000000000000000000000000000000000009139 142.0
YYD3_k127_1635128_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000001216 124.0
YYD3_k127_1635128_6 Glycoprotease family K14742 - - 0.0000000000000000000004109 107.0
YYD3_k127_1635128_7 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.2.1.11 0.000000003417 68.0
YYD3_k127_1637837_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 470.0
YYD3_k127_1637837_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 326.0
YYD3_k127_1637837_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000006254 250.0
YYD3_k127_1637837_3 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000001359 274.0
YYD3_k127_1637837_4 - - - - 0.00000000000000000000000004396 124.0
YYD3_k127_1637837_5 cheY-homologous receiver domain K11443 - - 0.000000000000001059 79.0
YYD3_k127_1637837_6 - - - - 0.0000000000004437 81.0
YYD3_k127_1643521_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 3.606e-253 831.0
YYD3_k127_1643521_1 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008293 436.0
YYD3_k127_1643521_10 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000008041 130.0
YYD3_k127_1643521_11 EamA-like transporter family - - - 0.000000000000000000000000084 114.0
YYD3_k127_1643521_12 Bacterial regulatory proteins, tetR family - - - 0.000000006994 66.0
YYD3_k127_1643521_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 311.0
YYD3_k127_1643521_3 MOSC domain K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000002272 258.0
YYD3_k127_1643521_4 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002005 264.0
YYD3_k127_1643521_5 Uncharacterized protein conserved in bacteria (DUF2219) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001985 252.0
YYD3_k127_1643521_6 - - - - 0.000000000000000000000000000000000000000000000000000007207 205.0
YYD3_k127_1643521_7 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000922 203.0
YYD3_k127_1643521_8 - - - - 0.00000000000000000000000000000000000000007899 157.0
YYD3_k127_1643521_9 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000002202 166.0
YYD3_k127_1650199_0 PFAM Rieske 2Fe-2S domain protein K00479,K00499 - 1.14.15.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 356.0
YYD3_k127_1650199_1 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000442 244.0
YYD3_k127_1650199_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000007888 248.0
YYD3_k127_1650770_0 Insulinase (Peptidase family M16) K07263 - - 0.0 1098.0
YYD3_k127_1650770_1 membrane protein, TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 411.0
YYD3_k127_1650770_2 ROK family K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 388.0
YYD3_k127_1650770_3 Aldo Keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007365 363.0
YYD3_k127_1650770_4 MOSC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000002022 230.0
YYD3_k127_1650770_5 PFAM sodium K14445 - - 0.0000000000000000000000000006654 128.0
YYD3_k127_1669710_0 AcrB/AcrD/AcrF family - - - 3.092e-194 645.0
YYD3_k127_1669710_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000009503 169.0
YYD3_k127_1669710_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000009489 154.0
YYD3_k127_1725932_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 7.278e-223 704.0
YYD3_k127_1725932_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007438 484.0
YYD3_k127_1725932_10 Adenosine/AMP deaminase - - - 0.000000000000000000000000000000000000000000000000002595 196.0
YYD3_k127_1725932_11 FAD binding domain - - - 0.000000000000000000000000000000000000005926 167.0
YYD3_k127_1725932_12 Haem-binding domain - - - 0.00000000000000000000000000000000000001913 150.0
YYD3_k127_1725932_13 - - - - 0.000000000000000000000000000000000001901 151.0
YYD3_k127_1725932_14 Methyltransferase domain - - - 0.00000000000000000000000000000009333 140.0
YYD3_k127_1725932_15 cheY-homologous receiver domain - - - 0.00000000000000000000000000000009792 128.0
YYD3_k127_1725932_2 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 417.0
YYD3_k127_1725932_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 397.0
YYD3_k127_1725932_4 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 401.0
YYD3_k127_1725932_5 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 318.0
YYD3_k127_1725932_6 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000004994 254.0
YYD3_k127_1725932_7 PFAM methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000006339 225.0
YYD3_k127_1725932_8 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000695 233.0
YYD3_k127_1725932_9 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000008253 194.0
YYD3_k127_1730690_0 COG3385 FOG Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009928 558.0
YYD3_k127_1730690_1 pfam abc K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001254 289.0
YYD3_k127_1730690_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000003437 176.0
YYD3_k127_1730690_3 peptidase S9 - - - 0.0000000000000000000000000000000000000002159 151.0
YYD3_k127_1730690_4 HD domain - - - 0.00000000000000000000000000001943 124.0
YYD3_k127_1730690_5 Carboxypeptidase regulatory-like domain - - - 0.000000000000000404 94.0
YYD3_k127_1731141_0 Prolyl oligopeptidase family - - - 3.219e-295 919.0
YYD3_k127_1731141_1 peptidase S9 - - - 1.919e-265 833.0
YYD3_k127_1731141_2 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008773 488.0
YYD3_k127_1731141_3 Domain of unknown function (DUF4301) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005178 435.0
YYD3_k127_1731141_4 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 308.0
YYD3_k127_1731141_5 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000004821 198.0
YYD3_k127_1731141_6 PFAM Nickel transport complex, NikM subunit, transmembrane - - - 0.00000000000000000000000000000001182 135.0
YYD3_k127_1731141_7 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000008094 118.0
YYD3_k127_1742266_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 494.0
YYD3_k127_1742266_1 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 400.0
YYD3_k127_1742266_2 N-Acetylmuramoyl-L-alanine amidase K01448,K02172 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000002608 280.0
YYD3_k127_1742266_3 regulatory protein, FmdB family - - - 0.000000000000000000007719 95.0
YYD3_k127_1742266_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 6.3.5.6,6.3.5.7 0.00000002866 59.0
YYD3_k127_1745565_0 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 414.0
YYD3_k127_1745565_1 enterobactin catabolic process K07214 - - 0.00000000000000000000000000000000000000000000000004146 194.0
YYD3_k127_1745565_2 RES domain protein - - - 0.000000000000000000000000003637 123.0
YYD3_k127_1745565_3 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000000003204 113.0
YYD3_k127_1745565_4 COG2146 Ferredoxin subunits of nitrite reductase and K00363,K05710 - 1.7.1.15 0.0000000000000000002773 103.0
YYD3_k127_1745565_5 Protein of unknown function (DUF2384) - - - 0.000000001237 66.0
YYD3_k127_1745565_6 thiolester hydrolase activity K06889 - - 0.000432 51.0
YYD3_k127_1749265_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488 334.0
YYD3_k127_1749265_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000004535 261.0
YYD3_k127_1749265_2 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000001336 184.0
YYD3_k127_1749265_3 PFAM response regulator receiver K07657 - - 0.000000000000000000000001935 117.0
YYD3_k127_1749265_4 response regulator - - - 0.0000000000000001892 90.0
YYD3_k127_1749265_5 energy transducer activity K03832 - - 0.0002768 48.0
YYD3_k127_1772456_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007942 447.0
YYD3_k127_1772456_1 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008932 453.0
YYD3_k127_1772456_2 Carboxypeptidase regulatory-like domain - - - 0.00000008603 63.0
YYD3_k127_1778638_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00520 - 1.16.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 515.0
YYD3_k127_1778638_1 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 477.0
YYD3_k127_1781755_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001796 274.0
YYD3_k127_1781755_1 Peptidase family M23 K21471 - - 0.00000000000000000000000000000000000000000002755 173.0
YYD3_k127_1781755_2 COG0457 FOG TPR repeat - - - 0.0000001551 58.0
YYD3_k127_178213_0 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005112 570.0
YYD3_k127_178213_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 317.0
YYD3_k127_178213_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000002217 244.0
YYD3_k127_1783728_0 AcrB/AcrD/AcrF family - - - 0.0 1214.0
YYD3_k127_1783728_1 DNA RNA helicase - - - 2.919e-235 755.0
YYD3_k127_1783728_10 TetR Family - - - 0.00000000000000000000000983 111.0
YYD3_k127_1783728_11 Outer membrane efflux protein - - - 0.00000000000000000000003391 109.0
YYD3_k127_1783728_2 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 436.0
YYD3_k127_1783728_3 Histidine kinase K07641,K07711 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0031667,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 387.0
YYD3_k127_1783728_4 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 328.0
YYD3_k127_1783728_5 Domain of unknown function (DUF1287) K09974 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001843 263.0
YYD3_k127_1783728_6 PFAM response regulator receiver K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003041 267.0
YYD3_k127_1783728_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000006323 249.0
YYD3_k127_1783728_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000009689 238.0
YYD3_k127_1783728_9 Domain of unknown function (DUF4336) - - - 0.00000000000000000000000004297 127.0
YYD3_k127_1807121_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008878 326.0
YYD3_k127_1807121_1 Voltage gated chloride channel K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 321.0
YYD3_k127_1807121_2 DMT(Drug metabolite transporter) superfamily permease - - - 0.000000000000000004246 99.0
YYD3_k127_1807121_3 Na H antiporter - - - 0.00001512 48.0
YYD3_k127_1807121_4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00002497 57.0
YYD3_k127_1830211_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000167 237.0
YYD3_k127_1830211_1 Aminotransferase class-III K00819 - 2.6.1.13 0.000000000000000000000000000000000000000000000000000000005429 209.0
YYD3_k127_1830211_2 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000008561 199.0
YYD3_k127_1843243_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 455.0
YYD3_k127_1843243_1 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 426.0
YYD3_k127_1843243_2 aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 392.0
YYD3_k127_184454_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000007902 277.0
YYD3_k127_184454_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000007402 250.0
YYD3_k127_184454_2 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000007981 214.0
YYD3_k127_184454_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000001167 175.0
YYD3_k127_184454_4 domain, Protein - - - 0.000000000000000000000000000000000000000001224 178.0
YYD3_k127_184454_5 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.00000000000000000000000000000000000000002788 161.0
YYD3_k127_1860252_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 7.032e-243 769.0
YYD3_k127_1860252_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 445.0
YYD3_k127_1860252_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000002832 136.0
YYD3_k127_1872587_0 PFAM Aminotransferase class I and II K05825 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008218 518.0
YYD3_k127_1872587_1 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 428.0
YYD3_k127_1872587_2 epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000001668 277.0
YYD3_k127_1872587_3 Pyruvate:ferredoxin oxidoreductase core domain II K00186 - 1.2.7.7 0.000000000000000000000000000000000000000000000000000000000003306 211.0
YYD3_k127_1872587_4 3-oxo-5-alpha-steroid 4-dehydrogenase K12343 - 1.3.1.22 0.00000000000000000000006761 113.0
YYD3_k127_1902506_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 454.0
YYD3_k127_1902506_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 392.0
YYD3_k127_1902506_2 DNA-templated transcription, initiation K02405 - - 0.00000000000000000000000000000000000000000000001943 176.0
YYD3_k127_1902506_3 EamA-like transporter family - - - 0.00000000000000000000000000004571 136.0
YYD3_k127_1906181_0 determination of stomach left/right asymmetry - - - 0.00000000000000000000000005223 120.0
YYD3_k127_1906181_1 CHAT domain - - - 0.00000000000000000000002357 115.0
YYD3_k127_1906181_2 Putative metal-binding motif - - - 0.0004736 52.0
YYD3_k127_1912018_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 540.0
YYD3_k127_1912018_1 Catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846 439.0
YYD3_k127_1912018_10 sequence-specific DNA binding K07729 - - 0.00000000000000003778 91.0
YYD3_k127_1912018_11 Thioesterase superfamily - - - 0.00000000000001075 81.0
YYD3_k127_1912018_2 Phenazine biosynthesis-like protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 338.0
YYD3_k127_1912018_3 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007582 300.0
YYD3_k127_1912018_4 PFAM carbonic anhydrase K01674 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 292.0
YYD3_k127_1912018_5 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004388 274.0
YYD3_k127_1912018_6 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000000000146 215.0
YYD3_k127_1912018_7 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000000001617 182.0
YYD3_k127_1912018_8 - - - - 0.0000000000000000000000000000000000001365 143.0
YYD3_k127_1912018_9 - - - - 0.00000000000000000000000000000009479 131.0
YYD3_k127_1930096_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 1.942e-294 921.0
YYD3_k127_1930096_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003893 261.0
YYD3_k127_1930096_2 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000000000000006034 101.0
YYD3_k127_197991_0 Glucose inhibited division protein A K00313 - - 1.83e-216 678.0
YYD3_k127_197991_1 Electron transfer flavoprotein domain K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 481.0
YYD3_k127_197991_2 Electron transfer flavoprotein domain K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 404.0
YYD3_k127_197991_3 Dehydrogenase K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 393.0
YYD3_k127_197991_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03855 - - 0.000000000000000000000000000000000000000000000004968 176.0
YYD3_k127_1980954_0 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0 1380.0
YYD3_k127_1980954_1 DNA alkylation repair - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008429 466.0
YYD3_k127_1980954_2 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 373.0
YYD3_k127_1980954_3 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005178 396.0
YYD3_k127_1980954_4 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 327.0
YYD3_k127_1980954_5 pteridine-dependent deoxygenase K18240 - 4.1.3.40,4.1.3.45 0.00000000000000000000000000000000000000000000002848 184.0
YYD3_k127_1980954_6 ferredoxin-NADP+ reductase activity - - - 0.000000000000000000000000000000005548 140.0
YYD3_k127_2002808_0 COG0841 Cation multidrug efflux pump K18902,K19594 - - 1.359e-238 748.0
YYD3_k127_2002808_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18298,K19586 - - 0.000000000000000000000000000000000000000000000000000000000000000003502 240.0
YYD3_k127_2013444_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 511.0
YYD3_k127_2013444_1 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 473.0
YYD3_k127_2013444_10 PspC domain - - - 0.0000000000002658 76.0
YYD3_k127_2013444_11 BlaR1 peptidase M56 - - - 0.000000000005321 76.0
YYD3_k127_2013444_2 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 348.0
YYD3_k127_2013444_3 histidinol dehydrogenase activity K14152 - 1.1.1.23,3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001265 299.0
YYD3_k127_2013444_4 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004464 289.0
YYD3_k127_2013444_5 Imidazoleglycerol-phosphate dehydratase K00817,K01089,K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.9,3.1.3.15,4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000002899 251.0
YYD3_k127_2013444_6 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000001194 203.0
YYD3_k127_2013444_7 Glutamine amidotransferase class-I K02501 - - 0.00000000000000000000000000000000000000000001055 177.0
YYD3_k127_2013444_8 PFAM TspO MBR family K05770 - - 0.0000000000000000000000000000000000000000001179 180.0
YYD3_k127_2013444_9 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000005581 155.0
YYD3_k127_2013695_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 404.0
YYD3_k127_2013695_1 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000883 386.0
YYD3_k127_2013695_2 Fumarylacetoacetate (FAA) hydrolase family K16165 - 3.7.1.20 0.0000000000000000000000000000000000000000000000000000000002513 216.0
YYD3_k127_2013695_3 Belongs to the peptidase S8 family - - - 0.000000000005237 80.0
YYD3_k127_2014155_0 Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs K05544 - 1.3.1.89 0.000000000000000000000000000000000000000000000000000000000000000007644 242.0
YYD3_k127_2014155_1 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000004791 175.0
YYD3_k127_2014155_2 Anti-sigma-K factor rskA - - - 0.0000000000000000000000000000000000000000009187 172.0
YYD3_k127_2014155_3 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000008469 157.0
YYD3_k127_2014155_4 OB-fold nucleic acid binding domain K03601 - 3.1.11.6 0.0000000000000000000000000004871 116.0
YYD3_k127_2014155_5 Exonuclease VII small subunit K03602 - 3.1.11.6 0.0000000000000000000008998 102.0
YYD3_k127_2016540_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000004693 229.0
YYD3_k127_2016540_1 COG0457 FOG TPR repeat - - - 0.0000008385 63.0
YYD3_k127_2016540_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00002305 58.0
YYD3_k127_2016540_3 - - - - 0.0000265 57.0
YYD3_k127_2017792_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1249.0
YYD3_k127_2017792_1 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006201 394.0
YYD3_k127_2017792_10 PilZ domain - - - 0.0000000000005641 76.0
YYD3_k127_2017792_12 carboxylic ester hydrolase activity - - - 0.000000001023 70.0
YYD3_k127_2017792_2 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 397.0
YYD3_k127_2017792_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 312.0
YYD3_k127_2017792_4 lipoprotein transporter activity K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002898 296.0
YYD3_k127_2017792_5 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004911 284.0
YYD3_k127_2017792_6 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000519 262.0
YYD3_k127_2017792_7 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000171 160.0
YYD3_k127_2017792_8 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000006752 162.0
YYD3_k127_2017792_9 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000003249 153.0
YYD3_k127_2021241_0 IrrE N-terminal-like domain K07110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002573 449.0
YYD3_k127_2021241_1 zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000006398 214.0
YYD3_k127_2036970_0 serine-type peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004235 361.0
YYD3_k127_2036970_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000001503 201.0
YYD3_k127_2036970_2 PFAM secretion protein HlyD family protein K03543 - - 0.0000000001178 68.0
YYD3_k127_2036970_3 Lamin Tail Domain - - - 0.00001243 57.0
YYD3_k127_2058078_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.0 1378.0
YYD3_k127_2058078_1 Sodium Bile acid symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 500.0
YYD3_k127_2058078_10 WLM-domain-containing protein - GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0018130,GO:0019438,GO:0019538,GO:0019985,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0070011,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - 0.00007625 55.0
YYD3_k127_2058078_2 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 460.0
YYD3_k127_2058078_3 Belongs to the ALAD family K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 444.0
YYD3_k127_2058078_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009975 374.0
YYD3_k127_2058078_5 Cytochrome C biogenesis protein - - - 0.00000000000000000000000000000000000000000000000000000000003693 219.0
YYD3_k127_2058078_6 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000005572 138.0
YYD3_k127_2058078_7 COG0526, thiol-disulfide isomerase and thioredoxins K02199 - - 0.00000000000000000000006267 113.0
YYD3_k127_2058078_8 redox-active disulfide protein 2 - - - 0.00000000000000005707 92.0
YYD3_k127_2058078_9 - - - - 0.00000002517 65.0
YYD3_k127_2073678_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002021 284.0
YYD3_k127_2073678_1 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003569 265.0
YYD3_k127_2073678_2 monooxygenase activity - - - 0.000000000000000000000000000000002604 134.0
YYD3_k127_2077505_0 phospho-N-acetylmuramoyl-pentapeptide-transferase activity K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 312.0
YYD3_k127_2077505_1 Ribosomal protein L11 methyltransferase (PrmA) K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001141 301.0
YYD3_k127_2077505_2 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004001 258.0
YYD3_k127_2077505_3 methyltransferase - - - 0.0000000000000000000000000000000000000000000000006204 197.0
YYD3_k127_2077505_4 protoporphyrinogen oxidase activity K01854 - 5.4.99.9 0.0000000000000000000000000000000000000000003512 164.0
YYD3_k127_2077505_5 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000001428 94.0
YYD3_k127_2096253_0 ATPase activity K02045 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 589.0
YYD3_k127_2096253_1 PFAM Phosphate-selective porin O K07221 - - 0.0000000000000000000000000000000000000000000000001053 184.0
YYD3_k127_2096253_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K07065 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0040008,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0045926,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 0.000000000004425 74.0
YYD3_k127_2096253_4 transcription factor binding K02488 - 2.7.7.65 0.0002845 44.0
YYD3_k127_2123600_0 Transketolase, central region K00615 - 2.2.1.1 4.973e-285 895.0
YYD3_k127_2123600_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 391.0
YYD3_k127_2123600_2 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000005427 192.0
YYD3_k127_2135229_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 2.554e-202 640.0
YYD3_k127_2135229_1 Belongs to the MurCDEF family K02558 - 6.3.2.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 464.0
YYD3_k127_2135229_2 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008772 287.0
YYD3_k127_2135229_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000008455 257.0
YYD3_k127_2135229_4 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000239 229.0
YYD3_k127_2135229_5 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000002101 109.0
YYD3_k127_2135229_6 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000006056 88.0
YYD3_k127_2135229_7 TIGRFAM TonB family protein K03832 - - 0.000001016 60.0
YYD3_k127_2135229_8 AsmA family K07289 - - 0.000005547 60.0
YYD3_k127_2135229_9 PFAM Abortive infection protein K07052 - - 0.00001217 55.0
YYD3_k127_2141346_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000187 165.0
YYD3_k127_2141346_1 Permease, YjgP YjgQ - - - 0.0000000000000002256 81.0
YYD3_k127_2141346_2 Cytochrome C biogenesis K02200 - - 0.000175 55.0
YYD3_k127_215579_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 614.0
YYD3_k127_215579_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006987 474.0
YYD3_k127_215579_10 TIGRFAM PTS system, fructose subfamily, IIC K02768,K02769,K02770 - 2.7.1.202 0.000000000000000008516 89.0
YYD3_k127_215579_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000008138 63.0
YYD3_k127_215579_12 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.00003136 57.0
YYD3_k127_215579_2 formate dehydrogenase (NAD+) activity K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008252 413.0
YYD3_k127_215579_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 361.0
YYD3_k127_215579_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 350.0
YYD3_k127_215579_5 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000000000000000000000000000000000000005405 238.0
YYD3_k127_215579_6 Metalloenzyme superfamily - - - 0.0000000000000000000000000000000000000000000000000000005628 204.0
YYD3_k127_215579_7 2 iron, 2 sulfur cluster binding K00334,K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000001057 189.0
YYD3_k127_215579_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.00000000000000000000006325 110.0
YYD3_k127_215579_9 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000001863 106.0
YYD3_k127_2164794_0 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 300.0
YYD3_k127_2164794_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000002861 193.0
YYD3_k127_2164794_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000004449 149.0
YYD3_k127_2164794_3 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000007828 154.0
YYD3_k127_2272059_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 411.0
YYD3_k127_2272059_1 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 316.0
YYD3_k127_2272059_2 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 324.0
YYD3_k127_2272059_3 Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation K07130 GO:0003674,GO:0003824,GO:0004061,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043167,GO:0043169,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.000000000000000000000000000000000000000000000000000000005379 206.0
YYD3_k127_2280585_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 347.0
YYD3_k127_2280585_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 317.0
YYD3_k127_2280585_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009207 266.0
YYD3_k127_2280585_3 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000008209 244.0
YYD3_k127_2280585_4 MotA/TolQ/ExbB proton channel family K03561,K03562 - - 0.00000000000000000000000000000005082 140.0
YYD3_k127_2280585_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000009345 64.0
YYD3_k127_2280585_6 Yip1 domain - - - 0.000006414 57.0
YYD3_k127_2307853_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004307 334.0
YYD3_k127_2307853_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.000000000000000000000000000000000001766 149.0
YYD3_k127_2307853_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000001956 113.0
YYD3_k127_2307853_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0007154,GO:0007165,GO:0008150,GO:0009897,GO:0009986,GO:0009987,GO:0015688,GO:0015833,GO:0015889,GO:0015891,GO:0015893,GO:0016020,GO:0016021,GO:0016032,GO:0019058,GO:0019062,GO:0019904,GO:0022610,GO:0023052,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0031992,GO:0032991,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0042914,GO:0043213,GO:0044403,GO:0044406,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0044650,GO:0046813,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051234,GO:0051704,GO:0051716,GO:0060089,GO:0065007,GO:0071575,GO:0071702,GO:0071705,GO:0071944,GO:0098002,GO:0098552,GO:0098670,GO:0098796,GO:0098797,GO:1901678 - 0.0000000001131 66.0
YYD3_k127_2307853_4 Protein kinase domain - - - 0.0000004915 62.0
YYD3_k127_2314641_0 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007654 344.0
YYD3_k127_2314641_1 TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000000402 209.0
YYD3_k127_2314641_2 glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000008075 162.0
YYD3_k127_2322561_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004927 566.0
YYD3_k127_2322561_1 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006609 404.0
YYD3_k127_2322561_2 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity K00819,K00821 GO:0003674,GO:0003824,GO:0004587,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.6.1.11,2.6.1.13,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008263 274.0
YYD3_k127_2322561_3 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003708 252.0
YYD3_k127_2322561_4 Amidohydrolase family K01468 - 3.5.2.7 0.0000000000000000000000000015 115.0
YYD3_k127_2322561_6 - - - - 0.0000002259 63.0
YYD3_k127_2323405_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000397 652.0
YYD3_k127_2323405_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005982 360.0
YYD3_k127_2323405_2 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 310.0
YYD3_k127_2323405_3 modulates the activities of several proteins which are inactive in their K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006637 254.0
YYD3_k127_2323405_4 Phosphate acetyl/butaryl transferase K00625,K04020,K13788 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000001135 226.0
YYD3_k127_2323405_5 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000001059 213.0
YYD3_k127_2323405_6 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000006895 214.0
YYD3_k127_2323405_7 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000006265 115.0
YYD3_k127_2323405_8 Hfq protein K03666 - - 0.000000000002768 77.0
YYD3_k127_2323405_9 Thioredoxin-like - - - 0.00000002069 66.0
YYD3_k127_2331692_0 nickel-dependent hydrogenase, large subunit K06281 - 1.12.99.6 3.209e-281 873.0
YYD3_k127_2331692_1 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 513.0
YYD3_k127_2331692_2 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 414.0
YYD3_k127_2331692_3 PFAM Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 379.0
YYD3_k127_2331692_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000005886 202.0
YYD3_k127_2331692_5 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000009329 167.0
YYD3_k127_2331692_6 PFAM peptidase M52 hydrogen uptake protein K03605 - - 0.0000000000000000000000000000000000004877 161.0
YYD3_k127_2331692_7 HupF/HypC family K04653 - - 0.0000000000000000001614 93.0
YYD3_k127_2331692_8 Belongs to the carbamoyltransferase HypF family K04656 - - 0.00000000000000001839 83.0
YYD3_k127_2343003_0 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006759 606.0
YYD3_k127_2343003_1 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006606 547.0
YYD3_k127_2343003_10 membrane protein domain - - - 0.0000682 47.0
YYD3_k127_2343003_2 Aminotransferase class-V K04127 - 5.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005964 436.0
YYD3_k127_2343003_3 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 436.0
YYD3_k127_2343003_4 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 349.0
YYD3_k127_2343003_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 0.00000000000000000000000000000000000000000000000000042 211.0
YYD3_k127_2343003_6 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000002478 190.0
YYD3_k127_2343003_7 Domain of unknown function (DUF4442) - - - 0.000000000000000000000000000000000000003034 151.0
YYD3_k127_2343003_8 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000004545 159.0
YYD3_k127_2343003_9 PFAM Class I peptide chain release factor K15034 - - 0.0000000000000000000000001562 125.0
YYD3_k127_2349812_0 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 488.0
YYD3_k127_2349812_1 SMART Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008672 376.0
YYD3_k127_2349812_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003723 346.0
YYD3_k127_2349812_3 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000171 268.0
YYD3_k127_2349812_4 rna polymerase sigma factor - - - 0.00000000000000000000000000000001412 130.0
YYD3_k127_2354986_0 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 408.0
YYD3_k127_2354986_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 327.0
YYD3_k127_2354986_2 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000003351 185.0
YYD3_k127_2354986_3 Divergent 4Fe-4S mono-cluster - - - 0.00000000000000000000000000000000008774 138.0
YYD3_k127_2354986_4 Dodecin K09165 - - 0.0000000000000000000002164 97.0
YYD3_k127_2355587_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789,K18138 - - 1.359e-283 919.0
YYD3_k127_2355587_1 belongs to the sigma-70 factor family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 420.0
YYD3_k127_2355587_10 sterol carrier protein - - - 0.00000002063 67.0
YYD3_k127_2355587_11 (Type IV) pilus K02507,K02666 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0015976,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 - 0.0003983 51.0
YYD3_k127_2355587_2 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008001 367.0
YYD3_k127_2355587_3 PFAM peptidase M48 Ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 367.0
YYD3_k127_2355587_4 FAD binding domain K00103,K00279 - 1.1.3.8,1.5.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 306.0
YYD3_k127_2355587_5 outer membrane efflux protein - - - 0.000000000000000000000000000000000000000002079 177.0
YYD3_k127_2355587_6 YCII-related domain - - - 0.00000000000000000000000000000000005967 135.0
YYD3_k127_2355587_7 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000001167 148.0
YYD3_k127_2355587_8 Domain of unknown function (DUF1956) - - - 0.000000000000000000001059 103.0
YYD3_k127_2355587_9 Sigma-70, region 4 K03088 - - 0.00000000000000000008128 96.0
YYD3_k127_235862_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 5.965e-252 805.0
YYD3_k127_235862_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 359.0
YYD3_k127_235862_2 - - - - 0.00000000000000000000000000000000000000000000000000000000007706 216.0
YYD3_k127_235862_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000001325 114.0
YYD3_k127_235862_4 - - - - 0.00000000000000000000006273 110.0
YYD3_k127_235862_5 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.00000000000000000002916 96.0
YYD3_k127_2372901_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001184 286.0
YYD3_k127_2372901_1 Domain of unknown function (DUF4347) - - - 0.000000000000000000000000000000000000007058 170.0
YYD3_k127_238121_0 Putative zinc binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 422.0
YYD3_k127_238121_1 CDP-glucose 4,6-dehydratase K01709 - 4.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 369.0
YYD3_k127_238121_2 Glucose-1-phosphate cytidylyltransferase K00978 - 2.7.7.33 0.00000000000000000000000000000000000000000000000000000002656 223.0
YYD3_k127_238121_3 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000001518 196.0
YYD3_k127_238121_4 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000001289 180.0
YYD3_k127_2381251_0 Amino acid permease - GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 4.485e-266 834.0
YYD3_k127_2381251_1 TrkA-C domain K03499 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001099 269.0
YYD3_k127_2381251_2 TOBE domain K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000002605 265.0
YYD3_k127_2381251_3 TrkA-N domain K03499,K10716 - - 0.000000000000000000000000000000000000002621 169.0
YYD3_k127_2383819_0 Beta-lactamase - - - 1.485e-239 763.0
YYD3_k127_2383819_1 OPT oligopeptide transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 527.0
YYD3_k127_2383819_10 Allophanate hydrolase subunit 1 - - - 0.0000000000000000000000000000000000000000001276 177.0
YYD3_k127_2383819_11 - - - - 0.000000000000000000000000000000000000002213 151.0
YYD3_k127_2383819_12 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000000000000000003074 100.0
YYD3_k127_2383819_13 EamA-like transporter family - - - 0.0000000000000005932 79.0
YYD3_k127_2383819_2 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 439.0
YYD3_k127_2383819_3 Mechanosensitive ion channel K16052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 391.0
YYD3_k127_2383819_4 Hypothetical methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 342.0
YYD3_k127_2383819_5 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003776 318.0
YYD3_k127_2383819_6 Allophanate hydrolase subunit 2 K01457,K01941 - 3.5.1.54,6.3.4.6 0.00000000000000000000000000000000000000000000000000000000000000000199 246.0
YYD3_k127_2383819_7 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000000000000000000000000000000000000000000000000003562 220.0
YYD3_k127_2383819_8 Histidine kinase K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000161 205.0
YYD3_k127_2383819_9 CpeT/CpcT family (DUF1001) - - - 0.000000000000000000000000000000000000000000000002644 179.0
YYD3_k127_239477_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 1.105e-244 773.0
YYD3_k127_239477_1 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000001749 237.0
YYD3_k127_239477_2 His Kinase A (phosphoacceptor) domain - - - 0.00001629 48.0
YYD3_k127_240336_0 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007209 278.0
YYD3_k127_240336_1 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003715 260.0
YYD3_k127_240336_2 PFAM Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000000000000005804 167.0
YYD3_k127_240336_3 YjbR - - - 0.0000000000000000000000000000000000000000015 165.0
YYD3_k127_240336_4 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000003434 164.0
YYD3_k127_240336_5 - - - - 0.00000000000000000000000000000000002879 145.0
YYD3_k127_240336_6 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000001716 136.0
YYD3_k127_240336_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000003594 131.0
YYD3_k127_240336_8 Acylphosphatase K01512 GO:0003674,GO:0003824,GO:0003998,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016787,GO:0016817,GO:0016818,GO:0050896 3.6.1.7 0.0007745 42.0
YYD3_k127_2404587_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 374.0
YYD3_k127_2404587_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000002113 235.0
YYD3_k127_2404587_2 Roadblock/LC7 domain - - - 0.0000000000000000000000000000000000000000000000000000004836 197.0
YYD3_k127_2404587_3 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.00000000000000000000000000000000000000000000000000003907 188.0
YYD3_k127_2404587_4 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000002105 92.0
YYD3_k127_2404587_5 Recombinase zinc beta ribbon domain K06400 - - 0.00000006543 66.0
YYD3_k127_2409614_0 Amidohydrolase family - - - 1.997e-280 909.0
YYD3_k127_2409614_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K05587 - 1.6.5.3 3.781e-225 719.0
YYD3_k127_2409614_10 PFAM Respiratory-chain NADH dehydrogenase 24 Kd subunit K05586 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000001429 194.0
YYD3_k127_2409614_11 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K18007 - 1.12.1.2 0.0000000000000000000000000000000000000000000000001147 196.0
YYD3_k127_2409614_12 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000003899 169.0
YYD3_k127_2409614_13 NYN domain - - - 0.000000000000000000000000000002894 124.0
YYD3_k127_2409614_14 Antibiotic biosynthesis monooxygenase K06996,K21481 - 1.14.99.57 0.000000000000000000000000004467 113.0
YYD3_k127_2409614_15 Acetyltransferase (GNAT) domain - GO:0003674,GO:0003824,GO:0016740,GO:0016746,GO:0016747 - 0.00000000000000000000000002127 121.0
YYD3_k127_2409614_16 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000005016 100.0
YYD3_k127_2409614_17 hydrogenase maturation protease - - - 0.00000000001517 78.0
YYD3_k127_2409614_18 oligosaccharyl transferase activity K07151 - 2.4.99.18 0.000000003843 69.0
YYD3_k127_2409614_19 Cupin domain - - - 0.0000008592 63.0
YYD3_k127_2409614_2 Coenzyme F420-reducing hydrogenase, alpha subunit K00436 - 1.12.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 623.0
YYD3_k127_2409614_3 DAHP synthetase I family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008255 519.0
YYD3_k127_2409614_4 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 378.0
YYD3_k127_2409614_5 Prephenate dehydrogenase chorismate mutase K00210 - 1.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 353.0
YYD3_k127_2409614_6 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K05588 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 331.0
YYD3_k127_2409614_7 Histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000348 331.0
YYD3_k127_2409614_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000131 257.0
YYD3_k127_2409614_9 uridine kinase K00876 - 2.7.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000004944 248.0
YYD3_k127_242584_0 Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate K01782,K01825 GO:0003674,GO:0003824,GO:0003857,GO:0004165,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0008692,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016856,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 2.684e-258 827.0
YYD3_k127_242584_1 tRNA-splicing ligase RtcB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009122 573.0
YYD3_k127_242584_2 Hemerythrin-like metal-binding protein K07216 - - 0.000000000000000009947 88.0
YYD3_k127_242584_3 Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed K00632 GO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 2.3.1.16 0.0000000002743 66.0
YYD3_k127_242584_4 Tetratricopeptide repeat - - - 0.0000000196 65.0
YYD3_k127_242584_5 von Willebrand factor, type A - - - 0.00002215 55.0
YYD3_k127_2434139_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000001322 213.0
YYD3_k127_2434139_1 Hfq protein - - - 0.00000000000000000000000000000006251 130.0
YYD3_k127_2434139_2 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.000000000000248 75.0
YYD3_k127_2436097_0 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 459.0
YYD3_k127_2436097_1 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000001088 200.0
YYD3_k127_2436097_2 oligosaccharyl transferase activity - - - 0.00000000000000001282 97.0
YYD3_k127_2444571_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006923 446.0
YYD3_k127_2444571_1 PFAM Na dependent nucleoside transporter K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006242 338.0
YYD3_k127_2444571_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352 - 1.8.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 304.0
YYD3_k127_2444571_3 Sigma-70 region 2 K03088 - - 0.000000000000000000001089 101.0
YYD3_k127_24609_0 Mismatch repair ATPase (MutS family) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007234 520.0
YYD3_k127_24609_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 323.0
YYD3_k127_24609_2 repeat-containing protein - - - 0.0000000000000001539 90.0
YYD3_k127_24609_3 Predicted membrane protein (DUF2238) K08984 - - 0.00001483 47.0
YYD3_k127_2469408_0 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008336 306.0
YYD3_k127_2469408_1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.000000000000000000000000000000001046 141.0
YYD3_k127_2469408_2 PFAM Transposase IS200 like - - - 0.0000000000000000000000000000002769 131.0
YYD3_k127_2469408_3 PKD domain - - - 0.0000000000000000000000000000003557 139.0
YYD3_k127_2469408_5 cellulase activity - - - 0.000001473 63.0
YYD3_k127_2499799_0 Penicillin amidase K01434 - 3.5.1.11 6.502e-206 705.0
YYD3_k127_2499799_1 Serine aminopeptidase, S33 K00433 - 1.11.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 472.0
YYD3_k127_2499799_2 Peptidase, M16 K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 305.0
YYD3_k127_2499799_3 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000483 312.0
YYD3_k127_2499799_4 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000000000000001467 218.0
YYD3_k127_2499799_5 PFAM YCII-related - - - 0.00000000000000000000000000000000000000000001227 174.0
YYD3_k127_2499799_6 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000000000007313 128.0
YYD3_k127_2499799_7 IgA Peptidase M64 - - - 0.00008252 55.0
YYD3_k127_2533018_0 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 475.0
YYD3_k127_2533018_1 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 471.0
YYD3_k127_2533018_2 Spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006209 300.0
YYD3_k127_2533018_3 Glutathione S-transferase, C-terminal domain K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005307 254.0
YYD3_k127_2533018_4 DoxX K15977 - - 0.000000000000000000000000000005538 124.0
YYD3_k127_2533018_5 COG3209 Rhs family protein - - - 0.0001153 55.0
YYD3_k127_2558303_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000003619 260.0
YYD3_k127_2558303_1 Trypsin-like serine protease - - - 0.000000007805 70.0
YYD3_k127_2596792_0 response regulator K02481,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 495.0
YYD3_k127_2596792_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 417.0
YYD3_k127_2596792_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002838 266.0
YYD3_k127_2596792_3 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000002457 253.0
YYD3_k127_2596792_4 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000001799 224.0
YYD3_k127_2596792_5 GAF domain - - - 0.0000000000000000000000000000000000000000006412 173.0
YYD3_k127_2596792_6 cheY-homologous receiver domain - - - 0.0000000000000000000002198 104.0
YYD3_k127_2596792_7 cheY-homologous receiver domain - - - 0.000000000000000003785 89.0
YYD3_k127_2597567_0 FAD linked oxidases, C-terminal domain K18930 - - 3.087e-287 908.0
YYD3_k127_2597567_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000000000000000000000000000000003879 203.0
YYD3_k127_2597567_2 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000003198 180.0
YYD3_k127_2604783_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1104.0
YYD3_k127_2608131_0 signal transduction histidine kinase K13587 - 2.7.13.3 0.0000000000000000002404 93.0
YYD3_k127_2612686_0 metallopeptidase activity K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 377.0
YYD3_k127_2612686_1 metallopeptidase activity K03592 - - 0.00000000000000000000000000000000000000000000000000000000000001137 234.0
YYD3_k127_2612686_2 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.000000000000000000000001873 108.0
YYD3_k127_2612686_3 - - - - 0.000000000000000000000001884 109.0
YYD3_k127_2615289_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 564.0
YYD3_k127_2615289_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 387.0
YYD3_k127_2615289_10 bacterial (prokaryotic) histone like domain K03530 - - 0.0000000000000000000000000000006875 123.0
YYD3_k127_2615289_11 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000001663 95.0
YYD3_k127_2615289_12 ribonuclease BN - - - 0.00000000000007332 85.0
YYD3_k127_2615289_13 PFAM PEGA domain - - - 0.000006379 58.0
YYD3_k127_2615289_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 303.0
YYD3_k127_2615289_3 GTP binding K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003579 278.0
YYD3_k127_2615289_4 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000001175 240.0
YYD3_k127_2615289_5 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000001545 237.0
YYD3_k127_2615289_6 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000001197 213.0
YYD3_k127_2615289_7 Metallo-beta-lactamase superfamily K02238 - - 0.000000000000000000000000000000000000000000000000000000001372 229.0
YYD3_k127_2615289_8 histone H2A K63-linked ubiquitination K10914 - - 0.0000000000000000000000000000000000000002681 159.0
YYD3_k127_2615289_9 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.00000000000000000000000000000000003711 151.0
YYD3_k127_2650759_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 2.312e-229 728.0
YYD3_k127_2650759_1 SMART Integrin alpha beta-propellor repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 502.0
YYD3_k127_2650759_2 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000003378 261.0
YYD3_k127_2650759_3 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000000000000000000000000000000000000008205 166.0
YYD3_k127_2650759_4 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000001839 151.0
YYD3_k127_2650759_6 Putative metal-binding motif - - - 0.00000000000005505 87.0
YYD3_k127_2657811_0 - - - - 0.0000000000000000000000000000000000000000000000000000001956 213.0
YYD3_k127_2657811_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179,K03832 - 3.2.1.4 0.00000000000001654 87.0
YYD3_k127_2659171_0 palmitoyl-(protein) hydrolase activity K06999 - - 0.0000000000000000000000000000000000001527 158.0
YYD3_k127_2659171_1 arylsulfatase A - - - 0.000000000000000000000000000000003487 138.0
YYD3_k127_2659171_2 belongs to the thioredoxin family K03671,K05838 - - 0.000000000000008201 89.0
YYD3_k127_2659171_3 TonB dependent receptor - - - 0.0000000003148 74.0
YYD3_k127_2659171_4 Thioredoxin-like - - - 0.00000003118 66.0
YYD3_k127_2660648_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 370.0
YYD3_k127_2660648_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000001657 265.0
YYD3_k127_2660648_2 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000004786 235.0
YYD3_k127_2660648_3 COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.00000000000000000000000000000000000000000001011 172.0
YYD3_k127_2660648_4 Cytochrome c assembly protein - - - 0.000000000000000000000000000001184 131.0
YYD3_k127_2660648_5 Peptidase family M50 K11749 - - 0.00000000000000000000000000000391 128.0
YYD3_k127_2660648_6 uroporphyrinogen-III synthase activity K01719,K01749,K02496,K13542,K13543 GO:0003674,GO:0003824,GO:0004852,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.107,2.5.1.61,4.2.1.75 0.000000000000000000000003874 119.0
YYD3_k127_2660648_7 TIGRFAM competence protein ComEA helix-hairpin-helix repeat K02237 - - 0.00000000000005203 79.0
YYD3_k127_2694896_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 515.0
YYD3_k127_2694896_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 323.0
YYD3_k127_2694896_2 - - - - 0.00000000002218 69.0
YYD3_k127_2695240_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 439.0
YYD3_k127_2703548_0 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003251 555.0
YYD3_k127_2703548_1 cAMP biosynthetic process K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 376.0
YYD3_k127_2703548_2 PFAM DGPFAETKE family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003656 242.0
YYD3_k127_2703548_3 DoxX-like family - - - 0.000000000000000000000000000000008187 149.0
YYD3_k127_2703548_4 DNA-templated transcription, initiation - - - 0.00000000000000000000000000006463 131.0
YYD3_k127_2703548_5 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0030145,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046906,GO:0046914,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.3.3 0.00000000000000000000000001395 109.0
YYD3_k127_2706045_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343,K05573 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 370.0
YYD3_k127_2706045_1 conserved protein (COG2071) K09166 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 290.0
YYD3_k127_2706045_2 Belongs to the acetyltransferase family. ArgA subfamily - - - 0.00000000000000000000000000000000000000000008394 166.0
YYD3_k127_2706045_3 - - - - 0.00000000000000000000000000000000003723 139.0
YYD3_k127_2706045_4 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000003636 122.0
YYD3_k127_2706045_5 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.0000000000002743 79.0
YYD3_k127_2706045_6 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.00000003189 58.0
YYD3_k127_2713292_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 2.293e-233 747.0
YYD3_k127_2713292_1 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 518.0
YYD3_k127_2713292_2 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 340.0
YYD3_k127_2713292_3 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000001947 237.0
YYD3_k127_2733328_0 Formiminotransferase-cyclodeaminase K00603,K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 597.0
YYD3_k127_2733328_1 E1-E2 ATPase K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000001015 173.0
YYD3_k127_2733328_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000001578 148.0
YYD3_k127_2733328_3 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000004364 142.0
YYD3_k127_2733328_4 PFAM filamentation induced by cAMP protein Fic - - - 0.00000525 50.0
YYD3_k127_2742509_0 benzoyl-CoA reductase K04113 - 1.3.7.8 8.244e-194 629.0
YYD3_k127_2742509_1 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 474.0
YYD3_k127_2742509_2 benzoyl-CoA reductase K04112 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 417.0
YYD3_k127_2742509_3 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009145 319.0
YYD3_k127_2742509_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000001036 157.0
YYD3_k127_2742509_5 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000001808 94.0
YYD3_k127_2742509_6 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000005483 80.0
YYD3_k127_2744843_0 Enoyl-CoA hydratase/isomerase K15513 - 4.1.2.44 6.205e-221 698.0
YYD3_k127_2744843_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 9.214e-213 696.0
YYD3_k127_2744843_2 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 GO:0003674,GO:0003824,GO:0004551,GO:0004721,GO:0006139,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0008796,GO:0008803,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0015949,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0034641,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0140096,GO:1901360,GO:1901564 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007229 290.0
YYD3_k127_2744843_3 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000007902 148.0
YYD3_k127_2809515_0 SpoIVB peptidase S55 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006801 306.0
YYD3_k127_2809515_1 extracellular solute-binding protein, family 5 K02035,K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002634 287.0
YYD3_k127_2809515_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003551 272.0
YYD3_k127_2809515_3 PFAM ExsB family protein K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000001375 248.0
YYD3_k127_2809515_4 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000005238 224.0
YYD3_k127_2809515_5 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033,K15581 - - 0.000000000000000000000000000000000000007121 168.0
YYD3_k127_2809515_6 Subtilase family - - - 0.0000000000000000000000000001787 136.0
YYD3_k127_2809515_7 PFAM Peptidase S24 S26A S26B, conserved region K03100 - 3.4.21.89 0.0000000004059 72.0
YYD3_k127_2828354_0 PFAM glycosyl transferase family 51 K05367 - 2.4.1.129 4.788e-194 638.0
YYD3_k127_2828354_1 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.000000000000000000000000000000000000000000000000000000002683 208.0
YYD3_k127_2860694_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family K13687 - - 0.000000000000000000000008777 108.0
YYD3_k127_2860694_1 Thrombospondin type 3 repeat - - - 0.00000000000000000007244 106.0
YYD3_k127_289397_0 PFAM peptidase M13 K01415 - 3.4.24.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000896 623.0
YYD3_k127_289397_1 Nitronate monooxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 416.0
YYD3_k127_289397_2 PFAM multi antimicrobial extrusion protein MatE - - - 0.0002741 50.0
YYD3_k127_2897146_0 cellulose binding - - - 1.142e-214 671.0
YYD3_k127_2897146_1 transcription factor binding K15836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 590.0
YYD3_k127_2897146_10 FR47-like protein - - - 0.0000000000000000000000000000000000000000000001308 185.0
YYD3_k127_2897146_11 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.00000000000000000000000000001311 136.0
YYD3_k127_2897146_12 GDYXXLXY protein - - - 0.00000000000000000000007802 114.0
YYD3_k127_2897146_15 Psort location CytoplasmicMembrane, score 9.46 - - - 0.0001598 51.0
YYD3_k127_2897146_2 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 388.0
YYD3_k127_2897146_3 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 315.0
YYD3_k127_2897146_4 Domain of unknown function (DUF4185) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005224 301.0
YYD3_k127_2897146_5 ThiF family K21029,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000002743 261.0
YYD3_k127_2897146_6 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000000000000000000000000000000000000762 212.0
YYD3_k127_2897146_7 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000000007757 216.0
YYD3_k127_2897146_8 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000001435 207.0
YYD3_k127_2897146_9 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000001403 190.0
YYD3_k127_2898410_0 UDP-N-acetylmuramate-L-alanine ligase activity K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 475.0
YYD3_k127_2898410_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 424.0
YYD3_k127_2898410_2 to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 430.0
YYD3_k127_2898410_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 351.0
YYD3_k127_2898410_4 Belongs to the SEDS family K03588 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001274 274.0
YYD3_k127_2898410_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000004953 261.0
YYD3_k127_2898410_6 Penicillin-binding protein, transpeptidase domain protein K03587,K08384 - 3.4.16.4 0.000000000000000000000000000000000000000000000000002015 196.0
YYD3_k127_2907918_0 PFAM MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 540.0
YYD3_k127_2907918_1 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K06282,K18008 - 1.12.2.1,1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 495.0
YYD3_k127_2907918_2 4 iron, 4 sulfur cluster binding K00124 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006066,GO:0006071,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016052,GO:0019400,GO:0019405,GO:0019563,GO:0019588,GO:0019662,GO:0019751,GO:0031224,GO:0031226,GO:0042597,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046164,GO:0046174,GO:0055114,GO:0071704,GO:0071944,GO:1901575,GO:1901615,GO:1901616 - 0.000000000000000000000000000000000000000000000000000000213 203.0
YYD3_k127_2907918_3 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000002088 183.0
YYD3_k127_2907918_4 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000006207 132.0
YYD3_k127_2931000_0 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000006468 138.0
YYD3_k127_2931000_1 Tetratricopeptide repeat - - - 0.000000000001657 79.0
YYD3_k127_2931000_2 PFAM iron dependent repressor K03709 - - 0.00000000001051 67.0
YYD3_k127_2960534_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006733 467.0
YYD3_k127_2960534_1 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007183 416.0
YYD3_k127_2960534_2 PFAM molybdopterin dehydrogenase, FAD-binding K11178 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000003305 237.0
YYD3_k127_2960534_3 amidohydrolase - - - 0.00000000000000000000000001374 125.0
YYD3_k127_2960534_4 - - - - 0.00000000000000001667 90.0
YYD3_k127_2973694_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 592.0
YYD3_k127_2973694_1 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 450.0
YYD3_k127_2973694_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 421.0
YYD3_k127_2973694_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000008632 227.0
YYD3_k127_2973694_4 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000000000119 211.0
YYD3_k127_2973694_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000003947 139.0
YYD3_k127_2990169_0 ligase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 390.0
YYD3_k127_2990169_1 esterase - - - 0.0000000000000000000000000000000000000000000000000000000000003442 218.0
YYD3_k127_2990169_2 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000001105 51.0
YYD3_k127_302965_0 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 524.0
YYD3_k127_302965_1 MafB19-like deaminase K01489 - 3.5.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 366.0
YYD3_k127_302965_2 Scavenger mRNA decapping enzyme C-term binding - - - 0.0000000000000000000000000000000000000000000000001127 181.0
YYD3_k127_302965_3 Protein of unknown function (DUF1016) - - - 0.0000000000000000000000000000000000000001014 159.0
YYD3_k127_302965_4 Uncharacterized conserved protein (DUF2075) K09384 - - 0.00000000000000000000000000006383 118.0
YYD3_k127_302965_5 endonuclease activity K07451 - - 0.0000000005671 68.0
YYD3_k127_3064671_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 360.0
YYD3_k127_3064671_1 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000023 234.0
YYD3_k127_3064671_2 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000002274 109.0
YYD3_k127_3064671_3 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.000004449 53.0
YYD3_k127_307452_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 439.0
YYD3_k127_307452_1 PFAM ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 319.0
YYD3_k127_3100251_0 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0008879,GO:0009058,GO:0009059,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0033692,GO:0034637,GO:0034645,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0045226,GO:0046379,GO:0046872,GO:0071704,GO:1901576 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 405.0
YYD3_k127_3100251_1 SMART Tetratricopeptide - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 364.0
YYD3_k127_3100251_2 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 346.0
YYD3_k127_3100251_3 aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007798 321.0
YYD3_k127_3100251_4 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 313.0
YYD3_k127_3100251_5 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000004124 252.0
YYD3_k127_3100251_6 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000004783 216.0
YYD3_k127_3109014_0 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 4.776e-203 655.0
YYD3_k127_3109014_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000276 247.0
YYD3_k127_3109014_2 lipid A biosynthesis acyltransferase - - - 0.0000000000000000004039 101.0
YYD3_k127_3109014_3 FabA-like domain - - - 0.0000000208 64.0
YYD3_k127_3109014_4 MMPL family K07003 - - 0.0000007824 61.0
YYD3_k127_3109014_5 PKD domain - - - 0.00002116 59.0
YYD3_k127_3144202_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 1.14e-226 744.0
YYD3_k127_3144202_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 385.0
YYD3_k127_3144202_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000036 239.0
YYD3_k127_3144202_3 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000000001908 222.0
YYD3_k127_3144202_4 - - - - 0.0000000001882 69.0
YYD3_k127_3144202_5 Matrixin - - - 0.00000003749 63.0
YYD3_k127_3144202_6 - - - - 0.0005504 49.0
YYD3_k127_316163_0 Dienelactone hydrolase family - - - 0.0 1086.0
YYD3_k127_316163_1 Sortilin, neurotensin receptor 3, - - - 4.164e-313 979.0
YYD3_k127_316163_2 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 343.0
YYD3_k127_316163_3 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009256 361.0
YYD3_k127_316163_4 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 317.0
YYD3_k127_316163_5 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000002518 244.0
YYD3_k127_316163_6 general secretion pathway protein G K02456 - - 0.00000001255 62.0
YYD3_k127_3169745_0 DEAD DEAH box helicase K06877 - - 3.134e-289 918.0
YYD3_k127_3169745_1 Sulfatase-modifying factor enzyme 1 - GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005509,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016667,GO:0016670,GO:0018158,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:0120147,GO:1901564,GO:1903135 - 0.000000000000000000000000000000003515 151.0
YYD3_k127_3169745_2 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000004895 133.0
YYD3_k127_3169745_3 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000001006 117.0
YYD3_k127_3169745_4 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000000006066 86.0
YYD3_k127_3169745_5 Belongs to the GarS family K01945,K11788 GO:0008150,GO:0040007 6.3.3.1,6.3.4.13 0.00003657 46.0
YYD3_k127_3185933_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 5e-324 1005.0
YYD3_k127_3185933_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.00000000000000000000000000000000000000000005601 183.0
YYD3_k127_3185933_2 TRAP transporter T-component - - - 0.00000000000000000000000007413 118.0
YYD3_k127_3201163_0 pseudouridine synthase activity K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007424 329.0
YYD3_k127_3201163_1 exo-alpha-(2->6)-sialidase activity K01406 - 3.4.24.40 0.000000000000000000000000000000000000000000000000001163 204.0
YYD3_k127_3201163_2 lipolytic protein G-D-S-L family - - - 0.0001468 54.0
YYD3_k127_3204917_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 7.467e-212 669.0
YYD3_k127_3204917_1 Amidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 558.0
YYD3_k127_3204917_2 cobalamin-transporting ATPase activity K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 438.0
YYD3_k127_3204917_3 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003376 285.0
YYD3_k127_3204917_4 Protein of unknown function (DUF1648) - - - 0.0000000000000000000001454 111.0
YYD3_k127_3204917_5 - - - - 0.0000000000002715 74.0
YYD3_k127_3206183_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 617.0
YYD3_k127_3206183_1 Biotin-lipoyl like K07799 - - 0.00000000000000000000000000000000000000000000000000000000005506 213.0
YYD3_k127_3206424_0 Glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 1.826e-278 890.0
YYD3_k127_3230159_0 Alpha-2-Macroglobulin K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006748 636.0
YYD3_k127_3230159_1 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004574 383.0
YYD3_k127_3230159_2 FAD dependent oxidoreductase K00273 - 1.4.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 311.0
YYD3_k127_3244435_0 Inositol monophosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 306.0
YYD3_k127_3244435_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001775 248.0
YYD3_k127_3244435_2 OsmC-like protein - - - 0.000000000000000000000000000000000001179 143.0
YYD3_k127_3247579_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.753e-253 806.0
YYD3_k127_3247579_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 451.0
YYD3_k127_3247579_2 Alanine dehydrogenase/PNT, N-terminal domain K00290,K14157 - 1.5.1.7,1.5.1.8,1.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 430.0
YYD3_k127_3247579_3 Saccharopine dehydrogenase C-terminal domain K00293 - 1.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 369.0
YYD3_k127_3247579_4 ATP-dependent helicase K03579 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 346.0
YYD3_k127_3247579_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000004525 83.0
YYD3_k127_3267762_0 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 537.0
YYD3_k127_3267762_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 413.0
YYD3_k127_3267762_2 Diguanylate cyclase - - - 0.000000000000000000000000009648 121.0
YYD3_k127_3267762_3 cheY-homologous receiver domain - - - 0.000000000000000000008128 100.0
YYD3_k127_328304_0 IgA Peptidase M64 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 437.0
YYD3_k127_328304_1 membrane protease - - - 0.00000000000000000000000001678 109.0
YYD3_k127_328304_2 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED - - - 0.00000000000000000000000001927 117.0
YYD3_k127_328304_4 - - - - 0.00000000001131 66.0
YYD3_k127_3301005_0 ATP-dependent helicase K03579 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001385 283.0
YYD3_k127_3301005_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000176 266.0
YYD3_k127_3301005_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K15546 - - 0.0000000000000000000000000000000000000000000000000005012 191.0
YYD3_k127_3301005_3 Memo-like protein - - - 0.000000000000000000000000000000000000000000002176 183.0
YYD3_k127_3301005_4 PFAM AMMECR1 domain protein K09141 - - 0.00000000000000000000000000000000000000001253 166.0
YYD3_k127_3301005_5 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000005551 174.0
YYD3_k127_3301005_6 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000009753 134.0
YYD3_k127_3301005_7 Transglutaminase-like superfamily - - - 0.0001869 56.0
YYD3_k127_3319601_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 503.0
YYD3_k127_3319601_1 TonB-dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007162 313.0
YYD3_k127_3319601_2 Sodium:solute symporter family K03307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002193 303.0
YYD3_k127_3319601_3 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000004891 150.0
YYD3_k127_3319601_4 - - - - 0.000000000000000000002336 107.0
YYD3_k127_3319601_5 cellulase activity K01387 - 3.4.24.3 0.00000000003848 76.0
YYD3_k127_3319601_6 response to copper ion - - - 0.000000003255 70.0
YYD3_k127_3319601_7 cellulase activity K01181 - 3.2.1.8 0.0000008313 62.0
YYD3_k127_3319853_0 A Receptor for Ubiquitination Targets - - - 0.00000000005857 76.0
YYD3_k127_3335222_0 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 544.0
YYD3_k127_3335222_1 Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 537.0
YYD3_k127_3335222_2 transport, permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 336.0
YYD3_k127_3335222_3 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007199 323.0
YYD3_k127_3335222_4 transport, permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 323.0
YYD3_k127_3335222_5 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 314.0
YYD3_k127_3335222_6 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002046 300.0
YYD3_k127_3335222_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K01993 - - 0.000000000000000000000000000000000000000000000000003426 195.0
YYD3_k127_3335222_8 transcriptional regulator - - - 0.00000000000000000008875 98.0
YYD3_k127_3335222_9 Protein of unknown function (DUF1054) - - - 0.000002395 57.0
YYD3_k127_3339687_0 FG-GAP repeat - - - 0.00000000004043 68.0
YYD3_k127_3339687_1 Periplasmic copper-binding protein (NosD) - - - 0.0003704 53.0
YYD3_k127_3339687_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0009165 42.0
YYD3_k127_3406307_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 522.0
YYD3_k127_3406307_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 468.0
YYD3_k127_3406307_10 Peptidase MA superfamily - - - 0.000000000000000000000000000000004777 147.0
YYD3_k127_3406307_11 - - - - 0.0000000000000000000000000000003416 141.0
YYD3_k127_3406307_12 Domain of unknown function (DUF4388) K03413 - - 0.0000000000000000000000000000006191 141.0
YYD3_k127_3406307_13 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000001256 111.0
YYD3_k127_3406307_14 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000001833 105.0
YYD3_k127_3406307_15 heat shock protein binding K05516,K05801 - - 0.0000000000004284 83.0
YYD3_k127_3406307_16 subunit of a heme lyase K02200 - - 0.00000000009342 69.0
YYD3_k127_3406307_17 - - - - 0.00002687 54.0
YYD3_k127_3406307_18 repeat-containing protein - - - 0.0006324 48.0
YYD3_k127_3406307_2 metal-dependent phosphohydrolase HD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002627 272.0
YYD3_k127_3406307_3 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009391 257.0
YYD3_k127_3406307_4 ABC transporter K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000009224 224.0
YYD3_k127_3406307_5 Cytochrome C assembly protein K02195 GO:0001539,GO:0002048,GO:0002049,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006518,GO:0006629,GO:0006643,GO:0006664,GO:0006807,GO:0006810,GO:0006928,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009237,GO:0009247,GO:0009636,GO:0009987,GO:0015886,GO:0016020,GO:0016021,GO:0016209,GO:0016491,GO:0016684,GO:0019184,GO:0019290,GO:0019748,GO:0031224,GO:0031226,GO:0034641,GO:0040011,GO:0042221,GO:0043043,GO:0043107,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046467,GO:0048870,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051674,GO:0051716,GO:0055114,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0071978,GO:0097237,GO:0097588,GO:0098754,GO:0098869,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901678,GO:1903509,GO:1990748 - 0.000000000000000000000000000000000000000000000000000000005379 206.0
YYD3_k127_3406307_6 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000001886 175.0
YYD3_k127_3406307_7 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000002316 172.0
YYD3_k127_3406307_8 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.0000000000000000000000000000000000002834 150.0
YYD3_k127_3406307_9 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000003941 145.0
YYD3_k127_3410895_0 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 509.0
YYD3_k127_3410895_1 sulfate ABC transporter K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007683 364.0
YYD3_k127_3410895_2 TIGRFAM sulfate ABC transporter, inner membrane subunit CysT K02046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003254 298.0
YYD3_k127_3410895_3 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000446 264.0
YYD3_k127_3410895_4 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.000000000000000000004486 102.0
YYD3_k127_3410895_5 - - - - 0.000000000000000001971 89.0
YYD3_k127_3410895_6 CAAX protease self-immunity K07052 - - 0.00000001564 61.0
YYD3_k127_3416061_0 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 388.0
YYD3_k127_3416061_1 Protein phosphatase 2C domain K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 393.0
YYD3_k127_3416061_2 May be involved in the transport of PQQ or its precursor to the periplasm K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000008018 226.0
YYD3_k127_3416061_3 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000003174 70.0
YYD3_k127_3421909_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 375.0
YYD3_k127_3421909_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 361.0
YYD3_k127_3421909_10 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993,K16922 - - 0.0005501 52.0
YYD3_k127_3421909_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005274 341.0
YYD3_k127_3421909_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008448 285.0
YYD3_k127_3421909_4 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003443 274.0
YYD3_k127_3421909_5 Biogenesis protein - - - 0.00000000000000000000000000000000000000000000000000000904 201.0
YYD3_k127_3421909_6 membrane-fusion protein - - - 0.00000000000000000000000000000000000000003313 175.0
YYD3_k127_3421909_7 HlyD family secretion protein K02005 - - 0.000000000000000000000000000000000005179 158.0
YYD3_k127_3421909_8 Tetratricopeptide repeat - - - 0.0000000000000003008 92.0
YYD3_k127_3421909_9 von Willebrand factor, type A - - - 0.0000000000000003098 93.0
YYD3_k127_3428864_0 Tricorn protease homolog K08676 - - 0.0 1095.0
YYD3_k127_3428864_1 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001521 299.0
YYD3_k127_3428864_2 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002368 249.0
YYD3_k127_3428864_3 PFAM ABC transporter related K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000001836 256.0
YYD3_k127_3428864_4 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000005125 241.0
YYD3_k127_3428864_5 3'-5' exonuclease K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000007611 213.0
YYD3_k127_3428864_6 Chalcone isomerase-like - - - 0.00000000000000000000000000000000003135 144.0
YYD3_k127_3428864_7 oligosaccharyl transferase activity - - - 0.00000000000000000000000001111 122.0
YYD3_k127_3428864_8 Transglutaminase-like superfamily - - - 0.000000000000000000000003995 116.0
YYD3_k127_3442322_0 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 551.0
YYD3_k127_3442322_1 Peptidase family M28 - - - 0.00000000000000000000001189 112.0
YYD3_k127_3442322_2 Belongs to the ompA family K03286 - - 0.000008485 55.0
YYD3_k127_3447681_0 COGs COG2912 conserved - - - 0.0000000000000000000000000000000000000000000000000000000008662 222.0
YYD3_k127_3447681_1 ferredoxin oxidoreductase K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000002338 201.0
YYD3_k127_3447681_2 PFAM peptidase S45 penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000007093 183.0
YYD3_k127_3447681_3 - - - - 0.00001519 55.0
YYD3_k127_3453400_0 Protein kinase domain K12132 - 2.7.11.1 3.598e-234 753.0
YYD3_k127_3453400_1 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 591.0
YYD3_k127_3453400_2 protein kinase activity K01972,K02342,K04096 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 2.7.7.7,6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004704 353.0
YYD3_k127_3453400_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 314.0
YYD3_k127_3453400_4 Protein of unknown function (DUF1579) - - - 0.000000000000000000000000000000000000000000000000000000000000000018 232.0
YYD3_k127_3453400_6 peroxiredoxin activity - - - 0.0000000000000000000000000000001688 132.0
YYD3_k127_3453400_7 - - - - 0.0000000000000000000000002347 112.0
YYD3_k127_3453400_8 - - - - 0.000000000000000000000001984 107.0
YYD3_k127_3453400_9 Domain of unknown function (DUF4382) - - - 0.0000000000002301 79.0
YYD3_k127_3457343_0 TIGRFAM phytoene desaturase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 1.224e-222 700.0
YYD3_k127_3457343_1 Flavin containing amine oxidoreductase - - - 1.328e-213 676.0
YYD3_k127_3457343_10 Response regulator of the LytR AlgR family K08083 - - 0.000000000000000000000000000000224 136.0
YYD3_k127_3457343_11 Putative cyclase - - - 0.000000000000000000000000133 106.0
YYD3_k127_3457343_2 AbgT putative transporter family K12942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 638.0
YYD3_k127_3457343_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 523.0
YYD3_k127_3457343_4 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 372.0
YYD3_k127_3457343_5 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002528 310.0
YYD3_k127_3457343_6 Domain of unknown function (DUF4396) - - - 0.0000000000000000000000000000000000000000000000000000000000001597 219.0
YYD3_k127_3457343_7 phosphorelay sensor kinase activity K02478,K07704 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071496,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.000000000000000000000000000000000000000000000001089 196.0
YYD3_k127_3457343_8 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000001241 191.0
YYD3_k127_3457343_9 COG3279 Response regulator of the LytR AlgR family K02477 - - 0.0000000000000000000000000000000000000000005453 166.0
YYD3_k127_3462141_0 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 0.0 1103.0
YYD3_k127_3462141_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 445.0
YYD3_k127_3462141_2 Methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 387.0
YYD3_k127_3462141_3 Belongs to the RimK family K05844,K14940 - 6.3.2.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 350.0
YYD3_k127_3462141_4 succinylglutamate desuccinylase aspartoacylase K06987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003266 299.0
YYD3_k127_3462141_5 PFAM glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000007996 142.0
YYD3_k127_3462141_6 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000002714 92.0
YYD3_k127_3486890_0 oligopeptide transport K03305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007321 272.0
YYD3_k127_3486890_1 membrane-anchored protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009456 250.0
YYD3_k127_3486890_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000197 184.0
YYD3_k127_3486890_3 Adenylate cyclase - - - 0.0000000000000000000000000000000001908 152.0
YYD3_k127_3486890_4 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000002677 113.0
YYD3_k127_3486890_5 - - - - 0.00000000000001351 89.0
YYD3_k127_349724_0 Domain of unknown function (DUF4143) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 416.0
YYD3_k127_349724_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 317.0
YYD3_k127_349724_2 Thrombospondin type 3 repeat - - - 0.0000000000000000000000008835 123.0
YYD3_k127_350407_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000394 292.0
YYD3_k127_350407_1 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 0.0000001454 56.0
YYD3_k127_3512754_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.165e-256 805.0
YYD3_k127_3512754_1 Binding-protein-dependent transport system inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 392.0
YYD3_k127_3512754_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 387.0
YYD3_k127_3512754_3 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000007782 262.0
YYD3_k127_3512754_4 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.00000000000000000000000000000000000000000000000000000002354 207.0
YYD3_k127_3512754_5 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000001782 142.0
YYD3_k127_3512754_6 Efflux ABC transporter permease protein K02004 - - 0.000000000000001176 87.0
YYD3_k127_3512754_7 YbbR-like protein - - - 0.0000000002682 72.0
YYD3_k127_3516007_0 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 384.0
YYD3_k127_3516007_1 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005753 337.0
YYD3_k127_3516007_2 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000004429 227.0
YYD3_k127_3517337_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 515.0
YYD3_k127_3517337_1 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006957 293.0
YYD3_k127_3517337_2 Peptidase family M54 K06974 - - 0.000000000000000000000000005776 128.0
YYD3_k127_3517337_3 Glycine cleavage H-protein - - - 0.0000000000000000001146 100.0
YYD3_k127_3517337_4 Glycine cleavage H-protein - - - 0.00000000000665 79.0
YYD3_k127_351898_0 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 383.0
YYD3_k127_351898_1 Protein of unknown function (DUF2950) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008476 373.0
YYD3_k127_351898_2 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001637 282.0
YYD3_k127_351898_3 PFAM Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000005349 243.0
YYD3_k127_351898_4 - - - - 0.00000000000000000000001685 104.0
YYD3_k127_351898_5 - - - - 0.000000000000000000000855 101.0
YYD3_k127_3541008_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 3.92e-318 996.0
YYD3_k127_3541008_1 Trypsin K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000001373 60.0
YYD3_k127_3541008_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00005057 53.0
YYD3_k127_3546393_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 547.0
YYD3_k127_3546393_1 IMP dehydrogenase activity K04767,K07182 - - 0.00000000000002919 87.0
YYD3_k127_3546393_2 Rhodanese Homology Domain - - - 0.000000000000131 84.0
YYD3_k127_3553163_0 mannose metabolic process - - - 0.00000000000000000000000000000000000000000000000000003192 214.0
YYD3_k127_3568961_0 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 473.0
YYD3_k127_3568961_1 Belongs to the peptidase M10A family K07761,K07999 GO:0001101,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016787,GO:0019538,GO:0031224,GO:0031225,GO:0032502,GO:0040007,GO:0042221,GO:0043170,GO:0044238,GO:0044425,GO:0044464,GO:0046686,GO:0048519,GO:0048580,GO:0048583,GO:0048589,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080186,GO:0140096,GO:1900055,GO:1900056,GO:1901564,GO:1901700,GO:1905622,GO:2000024,GO:2000026,GO:2000028,GO:2000241 - 0.000003665 61.0
YYD3_k127_3568961_2 - - - - 0.0006924 53.0
YYD3_k127_3569484_0 Pkd domain containing protein K12567 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 424.0
YYD3_k127_3569484_1 Metallo-peptidase family M12B Reprolysin-like - - - 0.0000000000000000000000000000000000000000000000001863 205.0
YYD3_k127_3569484_2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000001994 181.0
YYD3_k127_3569484_3 Two component regulator propeller - - - 0.00000000000000000000000000000000002768 142.0
YYD3_k127_3572135_0 Putative metal-binding domain of cation transport ATPase K01533 - 3.6.3.4 7.111e-222 715.0
YYD3_k127_3572135_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008065 550.0
YYD3_k127_3572135_10 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.0000000000000004283 85.0
YYD3_k127_3572135_11 Cytochrome oxidase maturation protein cbb3-type - - - 0.0000005429 63.0
YYD3_k127_3572135_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 486.0
YYD3_k127_3572135_3 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000005079 255.0
YYD3_k127_3572135_4 riboflavin synthase, alpha K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000004078 195.0
YYD3_k127_3572135_5 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000002819 175.0
YYD3_k127_3572135_6 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000004994 184.0
YYD3_k127_3572135_7 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000003198 160.0
YYD3_k127_3572135_8 KH domain K06960 - - 0.00000000000000000000000000361 112.0
YYD3_k127_3572135_9 Ribosomal protein S16 K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000035 90.0
YYD3_k127_3600390_0 Polysaccharide deacetylase K01452 - 3.5.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000001018 256.0
YYD3_k127_3600390_1 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000001928 188.0
YYD3_k127_3600390_2 Peptidase family M1 domain - - - 0.00000000000000000000000000000000008591 155.0
YYD3_k127_3600390_3 Methyltransferase domain - - - 0.0000000000000000000000000000000001092 149.0
YYD3_k127_3600390_4 Peptidase family M1 domain - - - 0.0000000000000000000000000000000003266 154.0
YYD3_k127_3600390_5 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000467 74.0
YYD3_k127_3605226_0 Acyl-CoA dehydrogenase, C-terminal domain K00248,K09478 - 1.3.8.1,1.3.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 497.0
YYD3_k127_3605226_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 404.0
YYD3_k127_3605226_2 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004682 383.0
YYD3_k127_3605226_3 - - - - 0.000000000000000000004533 100.0
YYD3_k127_3607239_0 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 411.0
YYD3_k127_3607239_1 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009259 364.0
YYD3_k127_3607239_2 Thiol disulfide interchange protein - - - 0.00000000000000002618 90.0
YYD3_k127_3618791_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 329.0
YYD3_k127_3618791_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 310.0
YYD3_k127_3618791_2 Lysin motif - - - 0.00000000000000000000000000000001233 141.0
YYD3_k127_3618791_3 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 - 2.1.1.171 0.00000000000000000000000000003605 133.0
YYD3_k127_3618791_4 type II secretion system protein E K02652 - - 0.00000000001502 76.0
YYD3_k127_3632929_0 hydroxymethylglutaryl-CoA reductase (NADPH) activity K00021 - 1.1.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 610.0
YYD3_k127_3632929_1 ABC1 family K03688 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016020,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901576,GO:1901661,GO:1901663 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 534.0
YYD3_k127_3632929_2 COG1012 NAD-dependent aldehyde dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008304 477.0
YYD3_k127_3632929_3 Enoyl-(Acyl carrier protein) reductase K15734 - 1.1.1.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 293.0
YYD3_k127_3632929_4 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000534 148.0
YYD3_k127_3632929_5 Phosphate acyltransferases - - - 0.000000000000000003114 100.0
YYD3_k127_3632929_6 Hemerythrin-like metal-binding protein K07216 - - 0.0002425 44.0
YYD3_k127_363815_0 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000008968 246.0
YYD3_k127_363815_1 PFAM response regulator receiver K07657 - - 0.00000000000000000000001992 116.0
YYD3_k127_363815_2 Tetratricopeptide repeat - - - 0.000000000000000000008041 106.0
YYD3_k127_363815_3 deoxyhypusine monooxygenase activity - - - 0.000000000000000002352 100.0
YYD3_k127_3653181_0 AMP-binding enzyme K00666,K12423,K12428 - - 0.0 1159.0
YYD3_k127_3653181_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 529.0
YYD3_k127_3653181_11 Putative metal-binding motif - - - 0.0006999 53.0
YYD3_k127_3653181_2 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 407.0
YYD3_k127_3653181_3 aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005335 300.0
YYD3_k127_3653181_4 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000000000000000000000000000000000000000000000000006824 228.0
YYD3_k127_3653181_5 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor K10672,K10794 - 1.21.4.1,1.21.4.2 0.00000000000000000000000000000000000000000000000002032 184.0
YYD3_k127_3653181_7 - - - - 0.000000000000000005052 86.0
YYD3_k127_3653181_8 META domain K03929 - - 0.0000000000000000239 98.0
YYD3_k127_3653181_9 Protein of unknown function (DUF3311) - - - 0.000000000001126 72.0
YYD3_k127_3662975_0 OPT oligopeptide transporter protein - - - 3.419e-270 843.0
YYD3_k127_3662975_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 539.0
YYD3_k127_3662975_2 Fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002621 362.0
YYD3_k127_3662975_3 Oxidoreductase FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000001076 241.0
YYD3_k127_36685_0 Sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005933 383.0
YYD3_k127_36685_1 Belongs to the glycosyltransferase 26 family K05946,K13660 - 2.4.1.187 0.00000000000000000000000000000000000000000000000000000000000000000000000003837 257.0
YYD3_k127_367443_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005168 381.0
YYD3_k127_367443_1 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000005974 244.0
YYD3_k127_367443_2 Uncharacterised conserved protein (DUF2156) K01163 - - 0.0000000000000000000000000005744 126.0
YYD3_k127_367443_3 transposase activity - - - 0.00000000000000000000004491 106.0
YYD3_k127_367443_4 YheC/D like ATP-grasp - GO:0005575,GO:0005623,GO:0042601,GO:0042763,GO:0044464 - 0.00000000000008113 83.0
YYD3_k127_3689540_0 Insulinase (Peptidase family M16) K07263 - - 2.233e-241 777.0
YYD3_k127_3689540_1 Carbon starvation protein K06200 - - 3.206e-208 666.0
YYD3_k127_3689540_10 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000002811 201.0
YYD3_k127_3689540_11 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000008505 181.0
YYD3_k127_3689540_12 COG0534 Na -driven multidrug efflux pump K03327 - - 0.000000000000000000000000000000000000000000001095 173.0
YYD3_k127_3689540_13 SurA N-terminal domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000004901 161.0
YYD3_k127_3689540_14 Universal stress protein - - - 0.00000000000000006133 87.0
YYD3_k127_3689540_15 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000001815 71.0
YYD3_k127_3689540_16 selT selW selH selenoprotein K07401 - - 0.000000000004254 67.0
YYD3_k127_3689540_17 Histidine kinase K02484,K07649,K10819,K19622,K20975 - 2.7.13.3 0.000002799 57.0
YYD3_k127_3689540_18 Membrane - - - 0.000006128 59.0
YYD3_k127_3689540_19 YCII-related domain K09780 - - 0.0001207 56.0
YYD3_k127_3689540_2 NapC/NirT cytochrome c family, N-terminal region - GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 529.0
YYD3_k127_3689540_3 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009361 463.0
YYD3_k127_3689540_4 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 429.0
YYD3_k127_3689540_5 Domain present in PSD-95, Dlg, and ZO-1/2. K08070 - 1.3.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 359.0
YYD3_k127_3689540_6 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 333.0
YYD3_k127_3689540_7 formate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 316.0
YYD3_k127_3689540_8 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001929 263.0
YYD3_k127_3689540_9 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002444 259.0
YYD3_k127_3726487_0 Molybdate ABC transporter K02018 - - 0.0000000000000000000000000000000000000000000000000000000000002057 218.0
YYD3_k127_3726487_1 Molybdenum ABC transporter K02020 - - 0.000000000000000000000000000000000000000003778 164.0
YYD3_k127_3726487_2 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.00000000000000000000522 99.0
YYD3_k127_3726487_3 Crp Fnr family transcriptional regulator K10914 GO:0000166,GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006109,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030312,GO:0030551,GO:0030552,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043565,GO:0044212,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0062012,GO:0065007,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000874,GO:2001141 - 0.000000000000001166 87.0
YYD3_k127_3746766_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 612.0
YYD3_k127_3746766_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010556,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1990837,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 486.0
YYD3_k127_3746766_10 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000001673 85.0
YYD3_k127_3746766_11 Ribosomal protein L34 K02914 - - 0.000000000005811 68.0
YYD3_k127_3746766_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 355.0
YYD3_k127_3746766_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009295 320.0
YYD3_k127_3746766_4 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000002362 273.0
YYD3_k127_3746766_5 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000005413 229.0
YYD3_k127_3746766_6 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000376 169.0
YYD3_k127_3746766_7 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000225 116.0
YYD3_k127_3746766_8 Jag_N K06346 - - 0.00000000000000003737 90.0
YYD3_k127_3746766_9 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000002371 82.0
YYD3_k127_3751290_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000442 290.0
YYD3_k127_3751290_1 PFAM Fibronectin, type III domain K01179,K06882 - 3.2.1.4 0.0000000000001162 86.0
YYD3_k127_3751290_2 C-terminal domain of CHU protein family - - - 0.000000001352 72.0
YYD3_k127_3751290_3 HEAT repeats K00239 - 1.3.5.1,1.3.5.4 0.000008976 58.0
YYD3_k127_3760882_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000004068 196.0
YYD3_k127_3760882_1 GHMP kinases C terminal K07031 - 2.7.1.168 0.0000000000000000000000000000000000000000000002358 177.0
YYD3_k127_3760882_2 Belongs to the UPF0200 family - - - 0.00000000000000000003474 103.0
YYD3_k127_3763556_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007422 496.0
YYD3_k127_3763556_1 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000003601 198.0
YYD3_k127_3763556_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000384 96.0
YYD3_k127_3763556_3 HhH-GPD superfamily base excision DNA repair protein - - - 0.000000000003326 79.0
YYD3_k127_3763556_4 Putative zinc-finger - - - 0.00000001883 65.0
YYD3_k127_3763556_5 alpha beta K06889 - - 0.0000003264 63.0
YYD3_k127_3786425_0 iron-sulfur cluster assembly K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 338.0
YYD3_k127_3786425_1 transcriptional regulator - - - 0.00000000000000000000000000000000003705 141.0
YYD3_k127_3786425_2 RNA-DNA hybrid ribonuclease activity K03470,K03471 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000162 120.0
YYD3_k127_3786693_0 Amidohydrolase family K01443 - 3.5.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 445.0
YYD3_k127_3786693_1 imidazolonepropionase activity K01443 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000000125 239.0
YYD3_k127_3786693_2 stage II sporulation - - - 0.0000000000000000000000000000000001608 141.0
YYD3_k127_3786693_3 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000002342 135.0
YYD3_k127_3786693_4 Metallo-peptidase family M12B Reprolysin-like - - - 0.00000000000000000008447 104.0
YYD3_k127_378903_0 Carboxypeptidase regulatory-like domain - - - 0.0006501 53.0
YYD3_k127_3789141_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005018 576.0
YYD3_k127_3789141_1 UDP binding domain K02474,K13015 - 1.1.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 550.0
YYD3_k127_3789141_10 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.00000000000000000000000000000000501 147.0
YYD3_k127_3789141_11 Glycosyl transferases group 1 - - - 0.0000000000000002571 93.0
YYD3_k127_3789141_12 MlaD protein K02067 - - 0.000002095 59.0
YYD3_k127_3789141_13 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.0002316 45.0
YYD3_k127_3789141_2 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007508 313.0
YYD3_k127_3789141_3 Male sterility protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 291.0
YYD3_k127_3789141_4 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001342 264.0
YYD3_k127_3789141_5 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000001413 236.0
YYD3_k127_3789141_6 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000004851 190.0
YYD3_k127_3789141_7 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.000000000000000000000000000000000000000004412 167.0
YYD3_k127_3789141_8 asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000000000000000000000000000000001213 165.0
YYD3_k127_3789141_9 PFAM polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000001763 152.0
YYD3_k127_3791862_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 611.0
YYD3_k127_3791862_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000005641 177.0
YYD3_k127_3795195_0 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 411.0
YYD3_k127_3795195_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000005362 228.0
YYD3_k127_3795195_2 PFAM Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000003238 162.0
YYD3_k127_3795195_3 (FHA) domain - - - 0.00000000004721 76.0
YYD3_k127_3809969_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 314.0
YYD3_k127_3809969_1 overlaps another CDS with the same product name - - - 0.000000000000000000000000000000001949 141.0
YYD3_k127_3818431_0 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 459.0
YYD3_k127_3825390_0 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 543.0
YYD3_k127_3825390_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 402.0
YYD3_k127_3825390_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000542 376.0
YYD3_k127_3825390_3 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 388.0
YYD3_k127_3825390_4 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.000000000000000000000000000000000000000000000001631 188.0
YYD3_k127_3825390_5 [2Fe-2S] binding domain K13483 - - 0.000000000000000000000000000000000000000000001237 172.0
YYD3_k127_3825390_6 B3/4 domain - - - 0.000000000000000000000000000000001111 139.0
YYD3_k127_3825390_7 Sigma-70 region 2 K03088 - - 0.000000000000000000000000001152 125.0
YYD3_k127_3830619_0 Site-specific recombinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007324 446.0
YYD3_k127_3830619_1 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003525 268.0
YYD3_k127_3830619_2 ABC 3 transport family K02075 - - 0.000000000000000000000000000000000000000000000000000000000000001007 226.0
YYD3_k127_3831146_0 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006878 369.0
YYD3_k127_3831146_1 cyclic nucleotide binding K07058,K14266 - 1.14.19.9 0.00000000000000000000000000748 128.0
YYD3_k127_3831146_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266,K17722 - 1.3.1.1,1.4.1.13,1.4.1.14 0.000000000000000000000003378 112.0
YYD3_k127_3831146_3 Aminotransferase class-V - - - 0.00000000000001726 75.0
YYD3_k127_3845073_0 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004799 246.0
YYD3_k127_3845073_1 Protein of unknown function (DUF2959) - - - 0.0000000000000000000000000000000000000000000000000000000009783 208.0
YYD3_k127_3845073_2 translation initiation factor activity K06996 - - 0.0000000000000000000000000000000000000001015 156.0
YYD3_k127_3845073_3 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.0000000007917 71.0
YYD3_k127_3845073_4 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 0.0000001454 56.0
YYD3_k127_3845850_0 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000006688 151.0
YYD3_k127_3845850_1 Acyl-transferase K00655 - 2.3.1.51 0.000000000000000000000000000256 122.0
YYD3_k127_3845850_2 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.0000000000000000000000000128 126.0
YYD3_k127_3849395_0 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 7.284e-214 687.0
YYD3_k127_3849395_1 Saccharopine dehydrogenase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 345.0
YYD3_k127_3849395_2 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001449 254.0
YYD3_k127_3849395_3 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001884 257.0
YYD3_k127_3849395_4 TPM domain K08988 - - 0.00000000000000000000000000000000003164 145.0
YYD3_k127_3849395_5 acyl-CoA thioester hydrolase, YbgC YbaW family K07107 - - 0.000000000000000000000000001303 118.0
YYD3_k127_3849395_6 PASTA K12132 - 2.7.11.1 0.000000000000000002652 95.0
YYD3_k127_3849395_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000004776 86.0
YYD3_k127_3849395_8 TPM domain K06872 - - 0.00002668 51.0
YYD3_k127_3863894_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488 354.0
YYD3_k127_3863894_1 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity K01928,K03802 - 6.3.2.13,6.3.2.29,6.3.2.30 0.00000000006818 74.0
YYD3_k127_3863894_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000003016 66.0
YYD3_k127_3904898_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006797 490.0
YYD3_k127_3904898_1 phosphorelay signal transduction system K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 410.0
YYD3_k127_3904898_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000004105 278.0
YYD3_k127_3904898_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000003381 126.0
YYD3_k127_3904898_4 Response regulator receiver - - - 0.000000000000001313 83.0
YYD3_k127_390840_0 oligosaccharyl transferase activity - - - 0.00000000000000000000000005459 124.0
YYD3_k127_390840_1 Bacterial protein of unknown function (DUF883) - - - 0.0000000000000000003601 96.0
YYD3_k127_390840_2 - - - - 0.00000000000000004315 81.0
YYD3_k127_390840_3 conserved protein UCP033924 - - - 0.00000000002985 66.0
YYD3_k127_390840_4 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.00000002713 64.0
YYD3_k127_3919441_0 Male sterility protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 346.0
YYD3_k127_3919441_1 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001095 291.0
YYD3_k127_3919441_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000002009 75.0
YYD3_k127_3921566_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000095 586.0
YYD3_k127_3921566_1 Tetratricopeptide repeat - - - 0.000000000000000001326 99.0
YYD3_k127_3921566_2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0098771 - 0.0000000000001424 76.0
YYD3_k127_3921566_3 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000001453 53.0
YYD3_k127_392276_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000567 386.0
YYD3_k127_392276_1 Sigma-54 interaction domain K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002906 261.0
YYD3_k127_392276_2 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000006708 215.0
YYD3_k127_392276_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000002417 190.0
YYD3_k127_392276_4 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000000025 136.0
YYD3_k127_392276_5 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000128 151.0
YYD3_k127_392276_6 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000006989 121.0
YYD3_k127_392276_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000003204 121.0
YYD3_k127_392276_8 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000003815 117.0
YYD3_k127_392276_9 Competence protein - - - 0.000000000000000000001573 103.0
YYD3_k127_3977860_0 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000001083 249.0
YYD3_k127_3977860_1 Subtilase family - - - 0.0000000000000000000000000000000000001719 166.0
YYD3_k127_3977860_2 Subtilase family - - - 0.0004528 48.0
YYD3_k127_3986213_0 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 495.0
YYD3_k127_3986213_1 TonB dependent receptor K02014 - - 0.00003055 53.0
YYD3_k127_4008874_0 DNA helicase K03657 GO:0000018,GO:0000166,GO:0000287,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009892,GO:0009987,GO:0010605,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030312,GO:0030554,GO:0031323,GO:0031324,GO:0032392,GO:0032508,GO:0032552,GO:0032554,GO:0032558,GO:0032564,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0036094,GO:0040007,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045910,GO:0045934,GO:0046483,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0060542,GO:0060543,GO:0065007,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 604.0
YYD3_k127_4008874_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000006016 134.0
YYD3_k127_4008874_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000001024 91.0
YYD3_k127_4010970_0 Von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 489.0
YYD3_k127_4010970_1 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000009231 250.0
YYD3_k127_4010970_2 succinate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000007676 232.0
YYD3_k127_4010970_3 Protein of unknown function (DUF423) - - - 0.000000000000000000000000428 105.0
YYD3_k127_4010970_4 bacterial OsmY and nodulation domain K04065 - - 0.0000000001783 70.0
YYD3_k127_4010970_5 Bacterial pre-peptidase C-terminal domain - - - 0.000003809 59.0
YYD3_k127_4027797_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 452.0
YYD3_k127_4027797_1 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000002542 238.0
YYD3_k127_4027797_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000002005 130.0
YYD3_k127_4027797_3 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000008884 83.0
YYD3_k127_4029162_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 296.0
YYD3_k127_4029162_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 287.0
YYD3_k127_4029162_2 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000931 207.0
YYD3_k127_4029162_3 Aldehyde dehydrogenase family K10217 - 1.2.1.32,1.2.1.85 0.000000000000000000000000000000000000000005019 176.0
YYD3_k127_4029162_4 Zn peptidase - - - 0.000000000000000000000000000000000000003276 169.0
YYD3_k127_4029162_5 PFAM CoA-binding domain protein K06929 - - 0.0000000000000000000000000000000000001164 147.0
YYD3_k127_4029162_6 Thioredoxin - - - 0.0000001239 57.0
YYD3_k127_4031024_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 584.0
YYD3_k127_4031024_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000009088 195.0
YYD3_k127_4031024_10 Protein of unknown function (DUF2914) - - - 0.000002841 56.0
YYD3_k127_4031024_2 - - - - 0.000000000000000000000000000000000000000000000001297 180.0
YYD3_k127_4031024_3 Domain of unknown function (DUF1929) - - - 0.00000000000000000000000000928 119.0
YYD3_k127_4031024_4 - - - - 0.000000000000000000000003463 108.0
YYD3_k127_4031024_5 Serine aminopeptidase, S33 K00433 - 1.11.1.10 0.000000000000000000000004673 119.0
YYD3_k127_4031024_6 Serine aminopeptidase, S33 K00433 - 1.11.1.10 0.000000000000000000000116 100.0
YYD3_k127_4031024_7 hyperosmotic response K04065 - - 0.0000000000000000000001485 105.0
YYD3_k127_4031024_8 carboxylic ester hydrolase activity K00433 - 1.11.1.10 0.000000000000000615 80.0
YYD3_k127_4031024_9 alpha/beta hydrolase fold - - - 0.00000006948 54.0
YYD3_k127_4035909_0 Heat shock 70 kDa protein K04043 - - 1.007e-235 743.0
YYD3_k127_4035909_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008302 393.0
YYD3_k127_4035909_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 386.0
YYD3_k127_4035909_3 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 312.0
YYD3_k127_4035909_4 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001663 267.0
YYD3_k127_4035909_5 arylsulfatase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000001179 246.0
YYD3_k127_4035909_6 diguanylate cyclase - - - 0.00000000000000000000000000000001319 139.0
YYD3_k127_4035909_7 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000002133 141.0
YYD3_k127_4035909_8 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.0000000000000000000000000000001853 141.0
YYD3_k127_4035909_9 peptidoglycan binding K02453,K03749 GO:0000910,GO:0003674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0009987,GO:0022402,GO:0030428,GO:0032153,GO:0032506,GO:0042834,GO:0044464,GO:0051301,GO:0097367 - 0.00009655 52.0
YYD3_k127_4041700_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005718 368.0
YYD3_k127_4041700_1 Belongs to the carbamoyltransferase HypF family K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 321.0
YYD3_k127_4041700_2 Polymorphic membrane protein Chlamydia - - - 0.0000000000000000000000000000000000000000000000000000000000000006068 250.0
YYD3_k127_4041700_3 domain protein K01387 - 3.4.24.3 0.0006945 53.0
YYD3_k127_4079925_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 486.0
YYD3_k127_4079925_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006656 401.0
YYD3_k127_4079925_2 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 355.0
YYD3_k127_4079925_3 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000266 361.0
YYD3_k127_4079925_4 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001774 264.0
YYD3_k127_4079925_5 - - - - 0.0000000000000000000000000000000009379 137.0
YYD3_k127_4079925_6 - - - - 0.000267 51.0
YYD3_k127_4080678_0 Involved in the tonB-independent uptake of proteins K03641 - - 6.643e-202 650.0
YYD3_k127_4080678_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 379.0
YYD3_k127_4080678_2 Bacterial PH domain K08981 - - 0.000000000000000000000000000000000000000000000000000000000000000001191 248.0
YYD3_k127_4080678_3 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.000000000000000000000000000000000000000000000009828 178.0
YYD3_k127_4080678_4 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000001513 153.0
YYD3_k127_4080678_5 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000001185 138.0
YYD3_k127_4080678_6 Bacterial PH domain K09167 - - 0.000000000000000000000000007638 115.0
YYD3_k127_4080678_7 PFAM Colicin V production protein K03558 - - 0.0000000075 64.0
YYD3_k127_4087899_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004622 529.0
YYD3_k127_4087899_1 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000001518 209.0
YYD3_k127_4087899_2 alpha beta K06889 - - 0.000000000000000000000000000000000000000000000000002944 206.0
YYD3_k127_4087899_3 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000009164 172.0
YYD3_k127_4087899_4 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.000000000000000000000000000000000000009864 157.0
YYD3_k127_4087899_5 cellulase activity - - - 0.000000000001449 81.0
YYD3_k127_4087899_6 Tetratricopeptide repeat - - - 0.00000000007741 76.0
YYD3_k127_4089650_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 436.0
YYD3_k127_4089650_1 Subtilase family - - - 0.000000000000000000000000000008854 138.0
YYD3_k127_4089650_2 Carbohydrate-binding protein of the ER - - - 0.00001773 58.0
YYD3_k127_4091980_0 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 359.0
YYD3_k127_4091980_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000003246 253.0
YYD3_k127_4091980_2 Putative esterase K07017 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006238 265.0
YYD3_k127_4091980_3 Protein of unknown function (DUF533) - - - 0.00000000000145 81.0
YYD3_k127_4091980_4 Rhomboid family K19225 - 3.4.21.105 0.000000000003495 77.0
YYD3_k127_4091980_5 - - - - 0.0000000006789 68.0
YYD3_k127_4092657_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 402.0
YYD3_k127_4092657_1 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 401.0
YYD3_k127_4092657_2 ATP ADP translocase K03301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003646 331.0
YYD3_k127_4092657_3 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 323.0
YYD3_k127_4092657_4 - - - - 0.000000000000000000000000000000000000000000000000001791 202.0
YYD3_k127_4092657_5 Acetyltransferase (GNAT) domain K03825 - - 0.00000000000000000000000000000000000000000000199 172.0
YYD3_k127_4092657_6 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000001453 59.0
YYD3_k127_4092657_7 Tetratricopeptide repeat - - - 0.000001314 62.0
YYD3_k127_4096105_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 524.0
YYD3_k127_4096105_1 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000003504 117.0
YYD3_k127_4096105_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000001805 104.0
YYD3_k127_4096105_3 Cell division ATP-binding protein ftsE K09811,K09812 GO:0000166,GO:0000287,GO:0000910,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007049,GO:0008144,GO:0008150,GO:0008356,GO:0009898,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019897,GO:0019898,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0030145,GO:0030554,GO:0031234,GO:0032153,GO:0032506,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042173,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043937,GO:0043938,GO:0044085,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0046677,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0065007,GO:0070297,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363,GO:1902531 - 0.000000002994 59.0
YYD3_k127_4097295_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 323.0
YYD3_k127_4097295_1 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 283.0
YYD3_k127_4097295_2 alcohol dehydrogenase K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000001459 233.0
YYD3_k127_4097295_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000136 169.0
YYD3_k127_4103862_0 gluconolactonase activity K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 601.0
YYD3_k127_4103862_1 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000178 287.0
YYD3_k127_4103862_2 Cupin 2, conserved barrel domain protein K11477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001065 279.0
YYD3_k127_4131172_0 Amp-dependent synthetase and ligase K00797,K01897 - 2.5.1.16,6.2.1.3 0.0 1162.0
YYD3_k127_4131172_1 alpha,alpha-trehalose-phosphate synthase K00697 - 2.4.1.15,2.4.1.347 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007128 390.0
YYD3_k127_4131172_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000001917 276.0
YYD3_k127_4131172_3 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000006511 161.0
YYD3_k127_4131172_4 - - - - 0.0000000000000000000000000000000000002984 149.0
YYD3_k127_4131172_5 glycosyl transferase family K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.0000000000000000000001627 114.0
YYD3_k127_4131172_6 - - - - 0.00000000000003301 74.0
YYD3_k127_4135479_0 formate C-acetyltransferase glycine radical K00656 - 2.3.1.54 0.0 1230.0
YYD3_k127_4135479_1 Serine dehydratase K01752 - 4.3.1.17 8.541e-239 749.0
YYD3_k127_4135479_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 580.0
YYD3_k127_4135479_3 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 445.0
YYD3_k127_4135479_4 Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000003311 287.0
YYD3_k127_4136138_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K11381 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000039 290.0
YYD3_k127_4136138_1 DNA RNA helicase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007637 286.0
YYD3_k127_4136138_2 SCP-2 sterol transfer family - - - 0.000000003258 63.0
YYD3_k127_4150503_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 595.0
YYD3_k127_4150503_1 Response receiver-modulated cyclic diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 338.0
YYD3_k127_4160590_0 Permease family K06901 GO:0003674,GO:0005215,GO:0005345,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006863,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015205,GO:0015207,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015851,GO:0015853,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0098655,GO:0098660,GO:0098662,GO:1902600,GO:1904823 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 448.0
YYD3_k127_4160590_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516 432.0
YYD3_k127_4160590_2 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 441.0
YYD3_k127_4160590_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. K12266 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 392.0
YYD3_k127_4160590_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000009189 230.0
YYD3_k127_4160590_5 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000001939 231.0
YYD3_k127_4160590_6 DJ-1/PfpI family - - - 0.00000000000000000000000000000000000000000000000000000745 199.0
YYD3_k127_4160590_7 PFAM pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 - - 0.00000000000000005612 93.0
YYD3_k127_4160590_8 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0001528 55.0
YYD3_k127_4160590_9 Peptide-N-glycosidase F, C terminal - - - 0.0002658 54.0
YYD3_k127_4182459_0 cellulose binding - - - 1.781e-292 929.0
YYD3_k127_4182459_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 398.0
YYD3_k127_4182459_2 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 370.0
YYD3_k127_4182459_3 Membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000257 286.0
YYD3_k127_4182459_4 Domain of unknown function (DUF4129) - - - 0.000000000000000000000000000000000000000000000000000000000004015 229.0
YYD3_k127_4182459_5 membrane protein domain - - - 0.0000000000000000000000000000000000000000000000000000000002918 213.0
YYD3_k127_4182459_6 Domain of unknown function (DUF4178) - - - 0.0000000000000000000000000000000000000000002045 168.0
YYD3_k127_4182459_7 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.000000000000000000000000000000000002473 141.0
YYD3_k127_4182459_8 Domain of unknown function (DUF4350) - - - 0.000000000000000000003016 110.0
YYD3_k127_4199412_0 Elongation factor G, domain IV K02355 - - 6.363e-227 724.0
YYD3_k127_4199412_1 Asparaginyl-tRNA synthetase K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 557.0
YYD3_k127_4199412_2 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000444 387.0
YYD3_k127_4199412_3 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008938 287.0
YYD3_k127_4199412_4 Protein of unknown function (DUF2400) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001133 249.0
YYD3_k127_4199412_5 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000001244 145.0
YYD3_k127_4199412_6 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000001045 110.0
YYD3_k127_4199412_7 peptidase M48, Ste24p - - - 0.0000000002517 74.0
YYD3_k127_4240122_0 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 454.0
YYD3_k127_4240122_1 epimerase K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007032 411.0
YYD3_k127_4240122_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 337.0
YYD3_k127_4240122_3 arylsulfatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000636 296.0
YYD3_k127_4240122_4 pyridoxal 5'-phosphate salvage K00020,K00275 - 1.1.1.31,1.4.3.5 0.000000000000000000000000000000000000000000000000000000616 199.0
YYD3_k127_4294107_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007259 526.0
YYD3_k127_4294107_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000002956 225.0
YYD3_k127_4294107_2 nuclease activity K18828 - - 0.000000000000000000000008548 107.0
YYD3_k127_4304410_0 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006408 466.0
YYD3_k127_4304410_1 TPR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000004365 237.0
YYD3_k127_4304410_2 Protein of unknown function (DUF3617) - - - 0.000000000000000000006496 104.0
YYD3_k127_4304410_3 Ferredoxin - - - 0.000000000000000001915 93.0
YYD3_k127_4304410_4 PilZ domain - - - 0.00004328 51.0
YYD3_k127_4313883_0 polyribonucleotide nucleotidyltransferase activity K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 7.137e-202 645.0
YYD3_k127_4313883_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000001552 200.0
YYD3_k127_4313883_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000001499 129.0
YYD3_k127_4313883_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000007711 100.0
YYD3_k127_4313883_4 Protein of unknown function (DUF503) K09764 - - 0.0000000000000006994 80.0
YYD3_k127_4325300_0 Nitronate monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 559.0
YYD3_k127_4325300_1 Penicillin binding protein transpeptidase domain K17838 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000005717 253.0
YYD3_k127_4325300_2 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000001309 84.0
YYD3_k127_4325300_3 PFAM Uncharacterised protein family UPF0150 - - - 0.00000000002797 71.0
YYD3_k127_4325300_4 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000003718 57.0
YYD3_k127_4325300_5 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00002639 50.0
YYD3_k127_4330754_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789 374.0
YYD3_k127_4330754_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0043953,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000000000000000000000000007199 192.0
YYD3_k127_4330754_2 - - - - 0.000000000000000000000000000000000000000008896 168.0
YYD3_k127_4330754_3 PFAM glycosyl transferase family 9 K02841 - - 0.0000000000000000000000000000000000000001402 166.0
YYD3_k127_4330754_4 Domain of unknown function (DUF4388) - - - 0.00000000000000000000001158 118.0
YYD3_k127_4330754_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03116,K03117 - - 0.000000000001081 74.0
YYD3_k127_4330754_6 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.00000000008844 74.0
YYD3_k127_4330754_7 Trm112p-like protein K09791 - - 0.00000000009101 70.0
YYD3_k127_4330754_8 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000328 64.0
YYD3_k127_4330754_9 Tetratricopeptide repeat - - - 0.0004888 47.0
YYD3_k127_4342426_0 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003157 284.0
YYD3_k127_4342426_1 - - - - 0.0000000000001217 83.0
YYD3_k127_4389345_0 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 353.0
YYD3_k127_4389345_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000001155 257.0
YYD3_k127_4389345_2 Glycosyl transferase family group 2 - - - 0.0000000000000000000000000000000000000000000000000000001237 205.0
YYD3_k127_4389345_3 Bacterial pullanase-associated domain K01187,K01200,K01208 - 3.2.1.133,3.2.1.135,3.2.1.20,3.2.1.41,3.2.1.54 0.0000000000000000000000000000000000000000002407 179.0
YYD3_k127_4389345_4 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.000000000000000000002015 98.0
YYD3_k127_4389345_5 Diguanylate cyclase - - - 0.00000000000000000004791 100.0
YYD3_k127_4389345_6 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000003717 66.0
YYD3_k127_4389345_7 Superfamily II DNA RNA helicases, SNF2 family - - - 0.0000005439 53.0
YYD3_k127_4398675_0 1-deoxy-D-xylulose-5-phosphate synthase activity K01662 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008614,GO:0008615,GO:0008654,GO:0008661,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009240,GO:0009987,GO:0016740,GO:0016744,GO:0017144,GO:0018130,GO:0019288,GO:0019438,GO:0019637,GO:0019682,GO:0019752,GO:0019842,GO:0030145,GO:0030975,GO:0030976,GO:0032787,GO:0034641,GO:0036094,GO:0040007,GO:0042180,GO:0042181,GO:0042364,GO:0042723,GO:0042724,GO:0042816,GO:0042819,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663,GO:1901681 2.2.1.7 3.394e-203 655.0
YYD3_k127_4398675_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 417.0
YYD3_k127_4398675_2 dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 360.0
YYD3_k127_4398675_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000006539 289.0
YYD3_k127_4398675_4 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.00000000000000000000000000000000000000161 168.0
YYD3_k127_4398675_5 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000002377 127.0
YYD3_k127_4398675_6 Protein of unknown function (DUF3467) - - - 0.00000000000000000008882 92.0
YYD3_k127_4398675_7 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000002765 75.0
YYD3_k127_4398675_8 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000009462 59.0
YYD3_k127_4409962_0 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000004656 181.0
YYD3_k127_4409962_1 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000002742 176.0
YYD3_k127_4409962_2 - - - - 0.000000001414 66.0
YYD3_k127_4428422_0 Sigma factor PP2C-like phosphatases - - - 0.000000000000000000000000000000000000007137 157.0
YYD3_k127_4428422_1 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000006238 112.0
YYD3_k127_4461773_0 Heat shock 70 kDa protein K04043 - - 2.045e-280 875.0
YYD3_k127_4461773_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 365.0
YYD3_k127_4461773_10 Domain of unknown function (DUF1844) - - - 0.0000000000000009501 83.0
YYD3_k127_4461773_2 Belongs to the 'phage' integrase family K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 302.0
YYD3_k127_4461773_3 MazG nucleotide pyrophosphohydrolase domain K02499,K04765 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001192 275.0
YYD3_k127_4461773_4 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000193 273.0
YYD3_k127_4461773_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000001222 233.0
YYD3_k127_4461773_6 Domain of unknown function (DUF4388) - - - 0.00000000000000000000000000000000000000000000000000000000000004092 235.0
YYD3_k127_4461773_7 IstB-like ATP binding protein K02315 - - 0.0000000000000000000000000000000000000000000002879 187.0
YYD3_k127_4461773_8 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.000000000000000000000000000000000000000000001019 172.0
YYD3_k127_4461773_9 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000323 130.0
YYD3_k127_44665_0 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 340.0
YYD3_k127_44665_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000009764 217.0
YYD3_k127_44665_2 PFAM glycosyl transferase family 9 K02843 - - 0.0000000000000000000000000000000000000000000000000000000000002968 224.0
YYD3_k127_44665_3 transposition, DNA-mediated K02342 - 2.7.7.7 0.0000006256 61.0
YYD3_k127_44665_4 Domain of unknown function (DUF1736) - - - 0.00001197 58.0
YYD3_k127_4467696_0 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 5.028e-245 771.0
YYD3_k127_4467696_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006312 518.0
YYD3_k127_4467696_2 PFAM aminotransferase class V - GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006807,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019752,GO:0042133,GO:0042136,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 357.0
YYD3_k127_4476627_0 Berberine and berberine like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000216 385.0
YYD3_k127_4476627_2 Glucose / Sorbosone dehydrogenase - - - 0.0000003193 53.0
YYD3_k127_44813_0 ABC transporter K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 395.0
YYD3_k127_44813_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006233 368.0
YYD3_k127_44813_2 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001807 272.0
YYD3_k127_44813_3 Amidinotransferase K01478 - 3.5.3.6 0.00000000000000000000004255 105.0
YYD3_k127_44813_4 - - - - 0.00000009961 66.0
YYD3_k127_4482438_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000004309 233.0
YYD3_k127_4482438_1 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000003414 209.0
YYD3_k127_4482438_2 oligosaccharyl transferase activity - - - 0.0000000000001619 85.0
YYD3_k127_4489613_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 6.891e-220 711.0
YYD3_k127_4489613_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 409.0
YYD3_k127_4489613_2 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000001991 241.0
YYD3_k127_4489613_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000009198 102.0
YYD3_k127_4493720_0 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009006 276.0
YYD3_k127_4493720_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000003805 156.0
YYD3_k127_4493720_2 S-layer domain protein - - - 0.00004764 52.0
YYD3_k127_4498341_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 617.0
YYD3_k127_4498341_1 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 579.0
YYD3_k127_4498341_10 TonB C terminal K03832 - - 0.0000000000000000006342 99.0
YYD3_k127_4498341_11 - - - - 0.0000000000000008594 88.0
YYD3_k127_4498341_12 acyl carrier protein - - - 0.0000000000001695 73.0
YYD3_k127_4498341_14 - - - - 0.00007875 48.0
YYD3_k127_4498341_2 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 559.0
YYD3_k127_4498341_3 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 486.0
YYD3_k127_4498341_4 COG2513 PEP phosphonomutase and related enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 336.0
YYD3_k127_4498341_5 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 311.0
YYD3_k127_4498341_6 Protein of unknown function (DUF1203) - - - 0.0000000000000000000000000000000000000000000000001446 181.0
YYD3_k127_4498341_7 - - - - 0.0000000000000000000000000000000003091 141.0
YYD3_k127_4498341_8 Cupin - - - 0.00000000000000000000000000001228 119.0
YYD3_k127_4498341_9 heme oxygenase (decyclizing) activity - - - 0.0000000000000000000000001635 111.0
YYD3_k127_454081_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 469.0
YYD3_k127_454081_1 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007839 348.0
YYD3_k127_454081_2 Putative regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000009073 199.0
YYD3_k127_454081_3 EamA-like transporter family - - - 0.000000000000000000003422 105.0
YYD3_k127_454081_4 MacB-like periplasmic core domain K02004 - - 0.00000000007634 64.0
YYD3_k127_454081_5 - - - - 0.0005224 49.0
YYD3_k127_4564939_0 SMART PDZ DHR GLGF domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004963 620.0
YYD3_k127_4564939_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 612.0
YYD3_k127_4564939_2 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007914 590.0
YYD3_k127_4564939_3 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 456.0
YYD3_k127_4564939_4 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000006272 186.0
YYD3_k127_4564939_5 transfer protein K20532 - - 0.00000000000000000000000000000000000009987 148.0
YYD3_k127_4564939_6 PFAM Conjugal transfer, TrbH - - - 0.0000000000000000000000463 100.0
YYD3_k127_4564939_7 TIGRFAM TonB family protein K03832 - - 0.0000001067 66.0
YYD3_k127_4564939_8 tetratricopeptide repeat - - - 0.00003284 56.0
YYD3_k127_4573883_0 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 360.0
YYD3_k127_4573883_1 Thrombospondin type 3 repeat - - - 0.0000000000000000000000000000000000000000000000000000000001139 230.0
YYD3_k127_4573883_2 Flavin containing amine oxidoreductase K06955 - - 0.000000000000000000000000000000000000000000000000000000002799 210.0
YYD3_k127_4573883_3 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000017 172.0
YYD3_k127_4573883_4 alginic acid biosynthetic process K01729,K17713 - 4.2.2.3 0.0000000000003623 83.0
YYD3_k127_4573883_5 Thrombospondin type 3 - - - 0.00000002035 65.0
YYD3_k127_4614703_0 PFAM Glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000001113 268.0
YYD3_k127_4614703_1 pyruvate phosphate dikinase, PEP K01007,K21787 - 2.7.9.2 0.00000000000000000000000000000000000000005846 168.0
YYD3_k127_4614703_2 lipid a biosynthesis - - - 0.00000000000000000000000000000001224 131.0
YYD3_k127_4614703_3 serine threonine protein kinase - - - 0.00000000000000000002324 101.0
YYD3_k127_4614703_4 von Willebrand factor, type A K12511 - - 0.0000000000000000001001 105.0
YYD3_k127_4614703_5 Phospholipid methyltransferase - - - 0.0000000000000000001181 101.0
YYD3_k127_4614703_6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000001541 81.0
YYD3_k127_4614703_7 serine threonine protein kinase - - - 0.000000008993 68.0
YYD3_k127_4647897_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 432.0
YYD3_k127_4647897_1 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000001036 60.0
YYD3_k127_4652160_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006958 565.0
YYD3_k127_4652160_1 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 510.0
YYD3_k127_4652160_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007673 507.0
YYD3_k127_4652160_3 stage II sporulation K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000001185 205.0
YYD3_k127_4658395_0 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002337 239.0
YYD3_k127_4658395_1 SnoaL-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000007716 231.0
YYD3_k127_4658395_2 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000007044 181.0
YYD3_k127_4658395_3 GGDEF domain - - - 0.00000000000000000000144 110.0
YYD3_k127_4661682_0 Dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009095 509.0
YYD3_k127_4661682_1 PFAM Conserved region in glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000003995 267.0
YYD3_k127_4661682_2 Thrombospondin type 3 repeat - - - 0.00000000000000000000000000000000000000002301 172.0
YYD3_k127_4661682_3 PFAM OmpW family protein K07275 - - 0.00000000000000000000000000000000001578 144.0
YYD3_k127_4667792_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 608.0
YYD3_k127_4667792_1 membrane protein required for spore maturation in B.subtilis K06374 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 419.0
YYD3_k127_4667792_10 C4-type zinc ribbon domain K07164 - - 0.00000000000001524 84.0
YYD3_k127_4667792_11 DivIVA protein K04074 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000003995 84.0
YYD3_k127_4667792_13 Amidohydrolase family K01468 - 3.5.2.7 0.0006895 50.0
YYD3_k127_4667792_2 TIGRFAM 6-phosphogluconate dehydrogenase, decarboxylating K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 403.0
YYD3_k127_4667792_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000004562 227.0
YYD3_k127_4667792_4 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000002043 166.0
YYD3_k127_4667792_5 Reverse transcriptase-like K02226,K22316 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006401,GO:0006725,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016891,GO:0016893,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0032296,GO:0033013,GO:0033014,GO:0034641,GO:0034655,GO:0042364,GO:0042578,GO:0043170,GO:0043755,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046700,GO:0051186,GO:0051188,GO:0071667,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 3.1.26.4,3.1.3.73 0.0000000000000000000000000000003698 127.0
YYD3_k127_4667792_6 Glucose-6-phosphate dehydrogenase subunit - - - 0.000000000000000000000000000007379 134.0
YYD3_k127_4667792_7 Domain of unknown function (DUF1737) - - - 0.000000000000000000000004499 104.0
YYD3_k127_4667792_8 Phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.000000000000008545 88.0
YYD3_k127_4667792_9 PFAM Plasmid stabilisation system protein - - - 0.00000000000001479 78.0
YYD3_k127_4680806_0 May be involved in recombinational repair of damaged DNA K03631 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 354.0
YYD3_k127_4680806_1 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 327.0
YYD3_k127_4680806_2 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005486 271.0
YYD3_k127_4680806_3 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.000000000000000000000000000000000000000000000000000000000000000000001858 260.0
YYD3_k127_4680806_4 PFAM SPFH domain Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000261 225.0
YYD3_k127_4680806_5 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000007855 208.0
YYD3_k127_4680806_6 MotA/TolQ/ExbB proton channel family K03561,K03562 - - 0.000000000000000000000000000000000000000002855 164.0
YYD3_k127_4680806_7 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000001245 137.0
YYD3_k127_4680806_8 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.00000000000000000000000006103 115.0
YYD3_k127_4680806_9 COG0810 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.00001965 55.0
YYD3_k127_4691468_0 oligopeptide transporter, OPT family - - - 3.764e-319 989.0
YYD3_k127_4691468_1 Peptidase dimerisation domain K01436,K01438,K01439 - 3.5.1.16,3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008606 521.0
YYD3_k127_4691468_10 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 325.0
YYD3_k127_4691468_11 Domain of unknown function (DUF1611_C) P-loop domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 319.0
YYD3_k127_4691468_12 Glutamate--cysteine ligase K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000001884 269.0
YYD3_k127_4691468_13 carboxylic ester hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002027 268.0
YYD3_k127_4691468_14 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000002629 271.0
YYD3_k127_4691468_15 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001043 262.0
YYD3_k127_4691468_16 Peptidase dimerisation domain K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000002866 242.0
YYD3_k127_4691468_17 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000308 230.0
YYD3_k127_4691468_18 protocatechuate 3,4-dioxygenase activity K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000001778 226.0
YYD3_k127_4691468_19 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000008988 207.0
YYD3_k127_4691468_2 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 492.0
YYD3_k127_4691468_20 Cupin domain - - - 0.00000000000000000000000000000000000000000001467 169.0
YYD3_k127_4691468_21 Acetyltransferases including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000000000000005148 160.0
YYD3_k127_4691468_22 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000006069 144.0
YYD3_k127_4691468_23 SMART Metal-dependent phosphohydrolase, HD region K07141 - 2.7.7.76 0.000000000000000000000000000000007021 147.0
YYD3_k127_4691468_24 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000001638 131.0
YYD3_k127_4691468_25 Polysaccharide deacetylase - - - 0.00000000000000000000000000003316 123.0
YYD3_k127_4691468_26 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K00663,K03790 - 2.3.1.128,2.3.1.82 0.000000000000000000000000001224 128.0
YYD3_k127_4691468_27 Regulates arginine biosynthesis genes K03402 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000001877 95.0
YYD3_k127_4691468_28 - - - - 0.00001194 57.0
YYD3_k127_4691468_3 Proprotein convertase P-domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009966 509.0
YYD3_k127_4691468_4 Cystathionine beta-synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 438.0
YYD3_k127_4691468_5 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008313 433.0
YYD3_k127_4691468_6 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 410.0
YYD3_k127_4691468_7 PFAM Phenazine biosynthesis PhzC PhzF protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 345.0
YYD3_k127_4691468_8 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 346.0
YYD3_k127_4691468_9 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005594 337.0
YYD3_k127_4701858_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 378.0
YYD3_k127_4701858_1 Single Cache-like K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001423 264.0
YYD3_k127_4701858_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000002484 232.0
YYD3_k127_4701858_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767 - 5.2.1.8 0.00000000000000000000000000006769 131.0
YYD3_k127_4714690_0 Gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004419 634.0
YYD3_k127_4714690_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 499.0
YYD3_k127_4714690_2 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004945 286.0
YYD3_k127_4714690_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003126 285.0
YYD3_k127_4714690_4 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004144 252.0
YYD3_k127_4714690_5 PFAM peptidase S1 and S6 chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000004726 87.0
YYD3_k127_4765887_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 401.0
YYD3_k127_4765887_1 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008759 330.0
YYD3_k127_4765887_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.0000000000000000000000000000000000005998 147.0
YYD3_k127_4765887_3 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000002398 76.0
YYD3_k127_4765887_4 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00001795 48.0
YYD3_k127_4765887_5 Tetratricopeptide repeat - - - 0.000222 48.0
YYD3_k127_4765887_6 YacP-like NYN domain K06962 - - 0.0006325 50.0
YYD3_k127_4775883_0 TIGRFAM amino acid carrier protein K03310 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 610.0
YYD3_k127_4775883_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 330.0
YYD3_k127_4775883_2 metal cluster binding K06940 - - 0.000000000000000000000000000007358 137.0
YYD3_k127_4790536_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 5.997e-211 668.0
YYD3_k127_4790536_1 iron-nicotianamine transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 562.0
YYD3_k127_4790536_10 PFAM RES domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000313 225.0
YYD3_k127_4790536_11 YceI-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000801 231.0
YYD3_k127_4790536_12 TIGRFAM cytochrome c nitrate reductase, small subunit K15876 - - 0.000000000000000000000000000000000000000000000000000003206 195.0
YYD3_k127_4790536_13 cyclic nucleotide binding K10914 - - 0.000000000000000000000000000000000000000000000000007206 187.0
YYD3_k127_4790536_14 Hydrogenase maturation protease - - - 0.000000000000000000000000004955 127.0
YYD3_k127_4790536_15 Methyltransferase domain - - - 0.000000000000006909 87.0
YYD3_k127_4790536_16 4Fe-4S dicluster domain - - - 0.000000009192 57.0
YYD3_k127_4790536_17 response regulator - - - 0.00000003929 59.0
YYD3_k127_4790536_18 Glycosyl transferase family 2 - - - 0.000006399 58.0
YYD3_k127_4790536_2 Nickel-dependent hydrogenase K00436 - 1.12.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009868 526.0
YYD3_k127_4790536_3 2 iron, 2 sulfur cluster binding K02823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 342.0
YYD3_k127_4790536_4 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006083 334.0
YYD3_k127_4790536_5 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 304.0
YYD3_k127_4790536_6 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K16950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000668 307.0
YYD3_k127_4790536_7 NAD(P)H quinone oxidoreductase, PIG3 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008638 306.0
YYD3_k127_4790536_8 PFAM MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008377 271.0
YYD3_k127_4790536_9 PFAM RNA binding S1 domain protein K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007504 259.0
YYD3_k127_48040_0 Ompa motb domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004475 283.0
YYD3_k127_48040_1 diguanylate cyclase - - - 0.0000000000000000000000001094 121.0
YYD3_k127_4890794_0 Cytochrome oxidase assembly protein K02259 - - 0.000000000000000000000000000000000000004268 163.0
YYD3_k127_4890794_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000001298 91.0
YYD3_k127_4890794_2 COG0457 FOG TPR repeat - - - 0.000005536 59.0
YYD3_k127_4891652_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 351.0
YYD3_k127_4891652_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000003593 214.0
YYD3_k127_4891652_2 purine ribonucleoside salvage K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000002068 200.0
YYD3_k127_4891652_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000001049 171.0
YYD3_k127_4891652_4 ABC transporter K01990 - - 0.000000000000000000000000000000000006671 139.0
YYD3_k127_4891652_5 Tetratricopeptide repeat protein - - - 0.0008945 50.0
YYD3_k127_490157_0 COG1131 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002245 294.0
YYD3_k127_490157_1 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000002126 244.0
YYD3_k127_490157_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000005837 182.0
YYD3_k127_490157_3 ABC-type multidrug transport system, permease component K01992 - - 0.000000000000000000000000000000005558 148.0
YYD3_k127_490157_4 ABC-2 family transporter protein K01992 - - 0.0000000000000000002693 101.0
YYD3_k127_490157_5 Thioredoxin-like - - - 0.000002343 51.0
YYD3_k127_4903416_0 fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1017.0
YYD3_k127_4903416_1 FtsX-like permease family K02004 - - 6.332e-263 835.0
YYD3_k127_4903416_10 Tetratricopeptide repeat - - - 0.00001041 57.0
YYD3_k127_4903416_2 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000348 356.0
YYD3_k127_4903416_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 380.0
YYD3_k127_4903416_4 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003765 309.0
YYD3_k127_4903416_5 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006738 269.0
YYD3_k127_4903416_6 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002395 291.0
YYD3_k127_4903416_7 - K00241 - - 0.00000000000000000000000000000000000000000000000000000000000000001095 232.0
YYD3_k127_4903416_8 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000765 198.0
YYD3_k127_4903416_9 Domain of unknown function (DUF4328) - - - 0.00000000000000001227 93.0
YYD3_k127_4904490_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 3.83e-222 701.0
YYD3_k127_4904490_1 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004897 402.0
YYD3_k127_4904490_2 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 401.0
YYD3_k127_4904490_3 Belongs to the ABC transporter superfamily K02031,K02032,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 348.0
YYD3_k127_4904490_4 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006786 268.0
YYD3_k127_4904490_5 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000002743 99.0
YYD3_k127_4905945_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009709 323.0
YYD3_k127_4905945_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000002478 201.0
YYD3_k127_4905945_2 Belongs to the UPF0102 family K07460 - - 0.000000000000000000000000006293 124.0
YYD3_k127_4905945_3 Thioredoxin-like K02199 - - 0.00000000000003438 85.0
YYD3_k127_4905945_5 belongs to the sigma-70 factor family, ECF subfamily - - - 0.00000006724 56.0
YYD3_k127_4910593_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 321.0
YYD3_k127_4910593_1 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000004654 200.0
YYD3_k127_4910593_2 methyltransferase activity - - - 0.000000000000000000000000000000000000003166 153.0
YYD3_k127_4910593_3 Protein-S-isoprenylcysteine methyltransferase - - - 0.000000000000000000000000000000003486 142.0
YYD3_k127_4910593_4 - - - - 0.000000000000000000000000000000003533 134.0
YYD3_k127_4910593_6 Belongs to the ClpA ClpB family - - - 0.00000004357 61.0
YYD3_k127_4910593_7 - - - - 0.0000001598 59.0
YYD3_k127_4924542_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 347.0
YYD3_k127_4924542_1 Proprotein convertase P-domain - - - 0.0000003427 64.0
YYD3_k127_4924542_2 Outer membrane protein beta-barrel domain - - - 0.000008911 52.0
YYD3_k127_4924542_3 Immune inhibitor A peptidase M6 K09607 - - 0.00003686 58.0
YYD3_k127_4933600_0 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000399 245.0
YYD3_k127_4933600_1 Involved in the TonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000002399 141.0
YYD3_k127_4936944_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352 - 1.8.5.5 4.255e-207 654.0
YYD3_k127_4936944_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004771 332.0
YYD3_k127_4936944_2 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000004369 154.0
YYD3_k127_4936944_3 Prepilin-type N-terminal cleavage methylation domain K02456,K02650 - - 0.00000000015 68.0
YYD3_k127_4937282_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000003108 153.0
YYD3_k127_4950922_0 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000006933 199.0
YYD3_k127_4950922_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000001287 203.0
YYD3_k127_4950922_2 SMART PAS domain containing protein - - - 0.00000000000000000000000000000000000000005314 174.0
YYD3_k127_4950922_3 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.00000000000000000000000000000000003466 144.0
YYD3_k127_4950922_4 Phosphodiester glycosidase - - - 0.000000000000000000000000000009669 128.0
YYD3_k127_4950922_5 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000008782 87.0
YYD3_k127_4950922_7 - - - - 0.00007814 47.0
YYD3_k127_4952226_0 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 615.0
YYD3_k127_4952226_1 Glycoside hydrolase, family 20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 548.0
YYD3_k127_4952226_2 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000006723 237.0
YYD3_k127_4952226_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000005019 163.0
YYD3_k127_4952226_4 Subtilase family - - - 0.00000000000000000000000000000001498 144.0
YYD3_k127_4952226_5 COG1404 Subtilisin-like serine proteases K14645 - - 0.00008423 55.0
YYD3_k127_4955557_0 Phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000000000000000000005111 201.0
YYD3_k127_4955557_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000000000000000000000969 163.0
YYD3_k127_4955557_2 Domain of unknown function (DUF4212) - - - 0.0000000000000000000000000000000000001145 145.0
YYD3_k127_4955557_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000005586 92.0
YYD3_k127_4961513_0 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 409.0
YYD3_k127_4961513_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 425.0
YYD3_k127_4961513_2 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 357.0
YYD3_k127_4961513_3 ABC transporter K02003 - - 0.0000000001056 62.0
YYD3_k127_5003113_0 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002704 253.0
YYD3_k127_5003113_1 Peptidyl-prolyl cis-trans isomerase K01802,K03772,K03773 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000002615 243.0
YYD3_k127_5003113_2 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000002416 186.0
YYD3_k127_5003113_3 ApaG domain K06195 - - 0.00000000000000000000000000000000000000000000003902 176.0
YYD3_k127_5003113_4 FtsX-like permease family K02004 - - 0.000000000000000000000000000009125 137.0
YYD3_k127_5003113_5 Belongs to the peptidase S8 family K01337,K01387,K05994,K08604,K14645,K20276 - 3.4.11.10,3.4.21.50,3.4.24.25,3.4.24.3 0.000000000000000000000000002232 126.0
YYD3_k127_5031765_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 411.0
YYD3_k127_5031765_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002634 325.0
YYD3_k127_5031765_2 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 317.0
YYD3_k127_5031765_3 mannose-1-phosphate guanylyltransferase activity K00971,K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000001757 177.0
YYD3_k127_5049781_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 554.0
YYD3_k127_5049781_1 Aldo Keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007101 331.0
YYD3_k127_5049781_2 Glucokinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001225 246.0
YYD3_k127_5049781_3 - - - - 0.0000000000000000000000000000001038 132.0
YYD3_k127_5049781_4 - - - - 0.000000000000000000000000004891 118.0
YYD3_k127_5049781_5 - - - - 0.00000000000000000000000001453 123.0
YYD3_k127_5049781_6 - - - - 0.000000000000895 81.0
YYD3_k127_5049781_7 - - - - 0.00000000001987 75.0
YYD3_k127_5051835_0 Aminotransferase class-V K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007101 499.0
YYD3_k127_5051835_1 Amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 465.0
YYD3_k127_5051835_2 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 390.0
YYD3_k127_5051835_3 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000001916 237.0
YYD3_k127_5051835_4 Phosphoglycerate mutase family K08296 - - 0.000000000000000000000000003031 117.0
YYD3_k127_5051835_5 Membrane K08988 - - 0.00000000000000001334 91.0
YYD3_k127_5054776_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 569.0
YYD3_k127_5054776_2 Divalent ion tolerance protein K03926 - - 0.0000000000000001835 80.0
YYD3_k127_5054776_3 - - - - 0.0000000715 55.0
YYD3_k127_5054776_4 PFAM Septum formation initiator K05589 - - 0.000001305 57.0
YYD3_k127_5069082_0 Carbamoyl-phosphate synthetase large chain domain protein K01955 - 6.3.5.5 0.0 1465.0
YYD3_k127_5069082_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 535.0
YYD3_k127_5069082_10 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000009924 229.0
YYD3_k127_5069082_11 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000004567 192.0
YYD3_k127_5069082_12 Lipid A biosynthesis K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000009483 209.0
YYD3_k127_5069082_13 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000005402 169.0
YYD3_k127_5069082_14 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000001029 184.0
YYD3_k127_5069082_15 Binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000001688 160.0
YYD3_k127_5069082_16 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000001099 154.0
YYD3_k127_5069082_17 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000002145 146.0
YYD3_k127_5069082_18 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000002746 134.0
YYD3_k127_5069082_19 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000001957 73.0
YYD3_k127_5069082_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006216 454.0
YYD3_k127_5069082_20 - - - - 0.0000000000002929 80.0
YYD3_k127_5069082_21 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000959 75.0
YYD3_k127_5069082_3 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 303.0
YYD3_k127_5069082_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005409 283.0
YYD3_k127_5069082_5 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000001035 275.0
YYD3_k127_5069082_6 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000001289 240.0
YYD3_k127_5069082_7 D,d-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000000001562 231.0
YYD3_k127_5069082_8 TIGRFAM rfaE bifunctional protein, domain I - - - 0.0000000000000000000000000000000000000000000000000000000000002244 233.0
YYD3_k127_5069082_9 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000008416 214.0
YYD3_k127_5074337_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774,K22110 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0009279,GO:0015267,GO:0015288,GO:0015749,GO:0015750,GO:0015751,GO:0015757,GO:0016020,GO:0019867,GO:0022803,GO:0022829,GO:0022857,GO:0030312,GO:0030313,GO:0031975,GO:0034219,GO:0044462,GO:0044464,GO:0046323,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:1904659 - 0.00000000000000000000000000000000000008161 165.0
YYD3_k127_5074337_1 ABC transporter transmembrane region K18889 - - 0.00000000001677 79.0
YYD3_k127_5074337_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000006434 48.0
YYD3_k127_5074337_3 - - - - 0.00011 53.0
YYD3_k127_5107292_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 1.042e-242 760.0
YYD3_k127_5107292_1 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008204 402.0
YYD3_k127_5107292_2 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 409.0
YYD3_k127_5107292_3 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01885,K01894 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005679 352.0
YYD3_k127_5107292_4 Cysteine-rich secretory protein family - - - 0.00000000000000000000004263 113.0
YYD3_k127_5123731_0 AMP-binding enzyme K00666,K12423,K12428 - - 0.0 1158.0
YYD3_k127_5123731_1 Belongs to the peptidase M48B family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 448.0
YYD3_k127_5123731_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 426.0
YYD3_k127_5123731_3 Short chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006174 253.0
YYD3_k127_5123731_4 PFAM Acetyl-CoA hydrolase transferase K01067 - 3.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000002063 229.0
YYD3_k127_5123731_5 methyltransferase K00563,K10947 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008270,GO:0008649,GO:0008757,GO:0008989,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0052912,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.187 0.000000000000000000000000000000000000000000000000000000000003625 230.0
YYD3_k127_5123731_6 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000002358 174.0
YYD3_k127_5123731_7 COG COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000001015 167.0
YYD3_k127_5123731_8 PAP2 superfamily - - - 0.0000000000000000000000001432 115.0
YYD3_k127_5181501_0 Glycogen debranching enzyme - - - 0.0 1455.0
YYD3_k127_5181501_1 Belongs to the glycosyl hydrolase 13 family - - - 0.000000000000000000000000000000000000000000000000003127 209.0
YYD3_k127_5181501_2 Belongs to the ompA family - - - 0.000000000000000000000000000000004899 140.0
YYD3_k127_5187427_0 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0 1152.0
YYD3_k127_5187427_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 6.22e-198 651.0
YYD3_k127_5187427_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 602.0
YYD3_k127_5187427_3 S-adenosylmethionine synthetase, C-terminal domain K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 536.0
YYD3_k127_5187427_4 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008185 378.0
YYD3_k127_5187427_5 PFAM PfkB domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 351.0
YYD3_k127_5187427_6 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000271 201.0
YYD3_k127_5187427_7 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.0000000000000000000000000000001324 143.0
YYD3_k127_5187427_8 NusB family K03625 - - 0.000000000000000000000000000009679 136.0
YYD3_k127_5187427_9 DNA polymerase III, delta subunit K02340 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.00001002 58.0
YYD3_k127_5191579_0 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment - - - 0.000000000000000000000000000000000000000000000000001226 210.0
YYD3_k127_5191579_1 FecR protein - - - 0.00000000000000000008938 96.0
YYD3_k127_5191579_2 peptidyl-tyrosine sulfation - - - 0.000001382 56.0
YYD3_k127_5197538_0 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 380.0
YYD3_k127_5197538_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.000000000000000000000000000000000000000002158 158.0
YYD3_k127_5197538_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000002575 122.0
YYD3_k127_5197538_3 lyase activity - - - 0.0000000004287 71.0
YYD3_k127_5197538_4 Fungalysin metallopeptidase (M36) - - - 0.0000396 58.0
YYD3_k127_5203512_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 552.0
YYD3_k127_5203512_1 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000005798 194.0
YYD3_k127_5203512_2 FR47-like protein - - - 0.0000000000000000000000000000000001725 143.0
YYD3_k127_5203512_3 Cupin 2, conserved barrel domain protein K06720 - 4.2.1.108 0.0000000000000000008266 88.0
YYD3_k127_5215297_0 B12 binding domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0 1557.0
YYD3_k127_5215297_1 protein conserved in bacteria - - - 0.000000000000000000000000000000004363 128.0
YYD3_k127_5229035_0 Glycogen debranching enzyme - - - 1.725e-194 646.0
YYD3_k127_5229035_1 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 578.0
YYD3_k127_5229035_10 KR domain K00059 - 1.1.1.100 0.00000000000000001434 87.0
YYD3_k127_5229035_11 transcriptional regulator - - - 0.00000001977 66.0
YYD3_k127_5229035_2 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 547.0
YYD3_k127_5229035_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 384.0
YYD3_k127_5229035_4 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 308.0
YYD3_k127_5229035_5 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000001358 247.0
YYD3_k127_5229035_6 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.000000000000000000000000000000000000131 146.0
YYD3_k127_5229035_7 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000001527 132.0
YYD3_k127_5229035_8 Tetratricopeptide repeat - - - 0.0000000000000000000006862 108.0
YYD3_k127_5229035_9 Aspartyl protease - - - 0.00000000000000001057 98.0
YYD3_k127_5246504_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03696 - - 8.226e-207 697.0
YYD3_k127_5246504_1 PFAM peptidase M3A and M3B thimet oligopeptidase F K08602 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008941 614.0
YYD3_k127_5246504_10 Tetratricopeptide repeat - - - 0.0000000000004742 82.0
YYD3_k127_5246504_11 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000005974 62.0
YYD3_k127_5246504_2 Sugar (and other) transporter K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 499.0
YYD3_k127_5246504_3 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 471.0
YYD3_k127_5246504_4 PFAM Cys Met metabolism K01760,K01761 - 4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006113 432.0
YYD3_k127_5246504_5 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003795 371.0
YYD3_k127_5246504_6 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 313.0
YYD3_k127_5246504_7 phosphorelay signal transduction system K10941 - - 0.00000000000000000000000000000000000000001439 161.0
YYD3_k127_5246504_8 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000001985 155.0
YYD3_k127_5246504_9 - - - - 0.0000000000000000000000009507 122.0
YYD3_k127_5265165_0 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01840,K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 603.0
YYD3_k127_5265165_1 Fumarase C C-terminus K01679 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 433.0
YYD3_k127_5265165_2 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 372.0
YYD3_k127_5265165_3 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 367.0
YYD3_k127_5265165_4 histidine kinase A domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 332.0
YYD3_k127_5265165_5 cation diffusion facilitator family transporter K16264 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000000000000000000000676 261.0
YYD3_k127_5265165_6 alcohol dehydrogenase K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000008747 166.0
YYD3_k127_5265165_7 Predicted integral membrane protein (DUF2270) - - - 0.0000000000000000000000000000000000000000005372 170.0
YYD3_k127_5265165_8 RESPONSE REGULATOR receiver - - - 0.0000000001155 69.0
YYD3_k127_5266627_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 496.0
YYD3_k127_5266627_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537 298.0
YYD3_k127_5266627_10 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000006824 75.0
YYD3_k127_5266627_11 Uncharacterized protein conserved in bacteria (DUF2255) - - - 0.0000000006653 69.0
YYD3_k127_5266627_2 sequence-specific DNA binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003564 259.0
YYD3_k127_5266627_3 FR47-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001033 250.0
YYD3_k127_5266627_4 Isoprenylcysteine carboxyl methyltransferase - - - 0.0000000000000000000000000000000000000000000003814 173.0
YYD3_k127_5266627_5 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000002969 177.0
YYD3_k127_5266627_6 Protein of unknown function (DUF3224) - - - 0.0000000000000000000000000000000000000000007297 165.0
YYD3_k127_5266627_8 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000003257 85.0
YYD3_k127_5266627_9 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000004686 89.0
YYD3_k127_5306845_0 ABC transporter K06147,K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 515.0
YYD3_k127_5306845_1 Mn2 dependent serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002315 249.0
YYD3_k127_5306845_2 selenocysteine lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000001158 248.0
YYD3_k127_5306845_3 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000232 189.0
YYD3_k127_5306845_4 Diacylglycerol kinase catalytic domain K07029 GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.107 0.0000000000000000000000000000000000000000001513 173.0
YYD3_k127_5306845_5 Transport and Golgi organisation 2 - - - 0.000000000000000001164 101.0
YYD3_k127_5307063_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 319.0
YYD3_k127_5307063_1 PBS lyase HEAT-like repeat - - - 0.000000000002355 80.0
YYD3_k127_5307063_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00006468 51.0
YYD3_k127_5310162_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1591.0
YYD3_k127_5310162_1 TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 540.0
YYD3_k127_5310162_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009354 440.0
YYD3_k127_5310162_3 GTP-binding protein HSR1-related K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001923 278.0
YYD3_k127_5310162_4 short-chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003296 239.0
YYD3_k127_5310162_5 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000000000000000000175 164.0
YYD3_k127_5319672_0 Belongs to the UPF0173 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001593 274.0
YYD3_k127_5319672_1 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000004643 124.0
YYD3_k127_5319672_2 mechanosensitive ion channel - - - 0.00000000003292 73.0
YYD3_k127_5319672_3 metallopeptidase activity - - - 0.0001087 55.0
YYD3_k127_5319672_4 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0003295 53.0
YYD3_k127_5323528_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 515.0
YYD3_k127_5323528_1 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 382.0
YYD3_k127_5323528_10 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000542 215.0
YYD3_k127_5323528_11 PFAM Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000002067 230.0
YYD3_k127_5323528_12 Methyltransferase type 11 K00570 - 2.1.1.17,2.1.1.71 0.000000000000000000000000000000000000000000001456 176.0
YYD3_k127_5323528_13 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000008565 158.0
YYD3_k127_5323528_14 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000199 165.0
YYD3_k127_5323528_15 3'-5' exonuclease K03684 - 3.1.13.5 0.0000000000000000003168 92.0
YYD3_k127_5323528_16 Major Facilitator Superfamily - - - 0.00000000000000001202 95.0
YYD3_k127_5323528_18 cytochrome C peroxidase - - - 0.00000009989 53.0
YYD3_k127_5323528_19 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000001637 59.0
YYD3_k127_5323528_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006013 383.0
YYD3_k127_5323528_20 PBS lyase HEAT domain protein repeat-containing protein K22221 - - 0.0001261 53.0
YYD3_k127_5323528_3 Tetrahydrodipicolinate N-succinyltransferase N-terminal K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 301.0
YYD3_k127_5323528_4 Amino acid kinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001107 303.0
YYD3_k127_5323528_5 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002023 294.0
YYD3_k127_5323528_6 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000007244 276.0
YYD3_k127_5323528_7 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000006402 258.0
YYD3_k127_5323528_8 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000008499 244.0
YYD3_k127_5323528_9 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000000000002206 235.0
YYD3_k127_5341755_0 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000002764 237.0
YYD3_k127_5341755_1 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 0.00000000000000000000000000000002087 132.0
YYD3_k127_5395164_0 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 1.275e-205 649.0
YYD3_k127_5395164_1 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004733 248.0
YYD3_k127_5395164_2 - - - - 0.000000000000000000000000000000000000000000000000004816 195.0
YYD3_k127_5395164_3 RNA recognition motif - - - 0.00000000000000000000000000002806 121.0
YYD3_k127_5395164_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000001941 66.0
YYD3_k127_5422407_0 Peptidase M56 - - - 0.00000000000000000000000000000005751 142.0
YYD3_k127_5422407_1 Polymer-forming cytoskeletal - - - 0.0000000000000000000000007485 116.0
YYD3_k127_5422407_2 Aminotransferase class-V - - - 0.000000000001773 67.0
YYD3_k127_5422407_3 PBS lyase HEAT-like repeat - - - 0.000000001595 69.0
YYD3_k127_5422407_4 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.00003519 53.0
YYD3_k127_5438645_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000557 319.0
YYD3_k127_5438645_1 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000004127 227.0
YYD3_k127_5438645_2 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000006864 151.0
YYD3_k127_544159_0 Carbon-nitrogen hydrolase K03820 - - 0.00000000000000000000000000000000000000001633 172.0
YYD3_k127_544159_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000009376 146.0
YYD3_k127_544159_2 Acyl-transferase K00655 - 2.3.1.51 0.0000000000000000000000000001235 126.0
YYD3_k127_544159_3 RNA polymerase K03088 - - 0.00000002003 61.0
YYD3_k127_5464092_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007534 384.0
YYD3_k127_5464092_1 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 361.0
YYD3_k127_5464092_10 CHAD domain containing protein - - - 0.00000000000000000000000000000000000000000107 181.0
YYD3_k127_5464092_11 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000002302 166.0
YYD3_k127_5464092_12 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000004195 134.0
YYD3_k127_5464092_13 Glutathione peroxidase - - - 0.00000000000000000004215 104.0
YYD3_k127_5464092_14 Tetratricopeptide repeat - - - 0.00000008695 57.0
YYD3_k127_5464092_15 Tetratricopeptide repeat - - - 0.0000007808 62.0
YYD3_k127_5464092_2 Glucose dehydrogenase C-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000992 316.0
YYD3_k127_5464092_3 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001822 282.0
YYD3_k127_5464092_4 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000005381 277.0
YYD3_k127_5464092_5 PFAM response regulator receiver K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008214 250.0
YYD3_k127_5464092_6 uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000001466 265.0
YYD3_k127_5464092_7 Amidohydrolase family K20810 - 3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000003346 239.0
YYD3_k127_5464092_8 TIGRFAM Methylglyoxal synthase K01734 - 4.2.3.3 0.000000000000000000000000000000000000000000000000000000000000001897 228.0
YYD3_k127_5464092_9 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000265 201.0
YYD3_k127_5472632_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 6.472e-226 721.0
YYD3_k127_5472632_1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01585 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 612.0
YYD3_k127_5472632_2 Peptidase family M50 K06402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008236 284.0
YYD3_k127_5472632_3 EXOIII K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000739 250.0
YYD3_k127_5472632_4 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000008179 224.0
YYD3_k127_5472632_5 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000007524 161.0
YYD3_k127_5472632_6 Acyl-transferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000008665 163.0
YYD3_k127_5472632_7 Psort location Cytoplasmic, score 8.96 K06967 - 2.1.1.217 0.00000000000000000001377 101.0
YYD3_k127_5472632_8 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000007229 91.0
YYD3_k127_5472632_9 cellulase activity K01181 - 3.2.1.8 0.00000000104 70.0
YYD3_k127_5481967_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 402.0
YYD3_k127_5484118_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0000018,GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0032300,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237 401.0
YYD3_k127_5484118_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 391.0
YYD3_k127_5484118_10 heat shock protein binding K05516,K05801 - - 0.000000000000000003955 98.0
YYD3_k127_5484118_11 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000002017 88.0
YYD3_k127_5484118_12 chaperone-mediated protein folding - - - 0.0000000000001183 83.0
YYD3_k127_5484118_13 surface antigen variable number - - - 0.000000002817 64.0
YYD3_k127_5484118_2 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000139 296.0
YYD3_k127_5484118_3 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000002685 274.0
YYD3_k127_5484118_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 0.00000000000000000000000000000000000000000000000002861 186.0
YYD3_k127_5484118_5 Soluble lytic murein transglycosylase-like protein - - - 0.0000000000000000000000000000000000009565 161.0
YYD3_k127_5484118_6 Surface antigen K07277 - - 0.000000000000000000000000000008235 122.0
YYD3_k127_5484118_7 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000002359 115.0
YYD3_k127_5484118_8 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000000362 105.0
YYD3_k127_5484118_9 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.00000000000000000001321 98.0
YYD3_k127_5486121_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 2.397e-280 903.0
YYD3_k127_5486121_1 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 329.0
YYD3_k127_5486121_2 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.000000000000000000001319 98.0
YYD3_k127_5486121_3 Hsp33 protein K04083 - - 0.0000003754 61.0
YYD3_k127_5486121_4 transposition, DNA-mediated K02342 - 2.7.7.7 0.000003069 55.0
YYD3_k127_5494230_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 421.0
YYD3_k127_5494230_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006243 316.0
YYD3_k127_5494230_2 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000001507 214.0
YYD3_k127_5494230_3 Protein of unknown function (DUF423) - - - 0.00000000000000000000000000000000000000000000965 165.0
YYD3_k127_5494230_4 Transcriptional regulator, Crp Fnr family - - - 0.00000000000000000000000000000001819 143.0
YYD3_k127_5502914_0 Natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 484.0
YYD3_k127_5502914_1 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007148 455.0
YYD3_k127_5502914_2 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008687 252.0
YYD3_k127_5502914_3 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000001838 182.0
YYD3_k127_5502914_4 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000006451 144.0
YYD3_k127_5502914_5 - - - - 0.000000000000000000005508 102.0
YYD3_k127_5503174_0 NAD(P)H-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008132 324.0
YYD3_k127_5503174_1 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001199 275.0
YYD3_k127_5503174_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000003244 156.0
YYD3_k127_5503174_4 Uncharacterised protein family UPF0066 - - - 0.000000001287 59.0
YYD3_k127_5511405_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 546.0
YYD3_k127_5511405_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 319.0
YYD3_k127_5511405_2 - - - - 0.0000000000000002415 89.0
YYD3_k127_5511405_3 Tetratricopeptide repeat - - - 0.00000001337 65.0
YYD3_k127_5539053_0 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 341.0
YYD3_k127_5539053_1 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 327.0
YYD3_k127_5539053_2 Alpha-amylase domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.00000001057 64.0
YYD3_k127_5541293_0 Alpha-amylase domain K01176 - 3.2.1.1 2.025e-203 646.0
YYD3_k127_5541293_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000616 473.0
YYD3_k127_5541293_2 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 413.0
YYD3_k127_5541293_3 Belongs to the ABC transporter superfamily K05816,K10111,K10112 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009668 281.0
YYD3_k127_5541293_4 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000006295 103.0
YYD3_k127_5571625_0 L-aspartate oxidase K00278 - 1.4.3.16 5.449e-235 736.0
YYD3_k127_5571625_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 486.0
YYD3_k127_5571625_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 416.0
YYD3_k127_5571625_3 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000002992 106.0
YYD3_k127_5571625_4 deoxyhypusine monooxygenase activity - - - 0.00002074 57.0
YYD3_k127_5575880_0 BNR Asp-box repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 539.0
YYD3_k127_5620803_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004682 249.0
YYD3_k127_5620803_1 Alanine-glyoxylate amino-transferase - - - 0.000000000000000000000000000000000000000000000000000000001075 214.0
YYD3_k127_5620803_2 Protein of unknown function (DUF2785) - - - 0.0000000000000000000000000007431 129.0
YYD3_k127_5620803_3 Exopolysaccharide synthesis, ExoD - - - 0.00000000000008237 80.0
YYD3_k127_5630027_0 PFAM aminotransferase, class I K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006404 397.0
YYD3_k127_5630027_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000012 282.0
YYD3_k127_5630027_2 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000008743 269.0
YYD3_k127_5630027_3 SMART Tetratricopeptide - - - 0.0000000000000001181 85.0
YYD3_k127_5638266_0 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009837 492.0
YYD3_k127_5647681_0 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 308.0
YYD3_k127_5647681_1 ABC-type uncharacterized transport system K01992 - - 0.000000000000000000000000000000000004144 158.0
YYD3_k127_5647681_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000007611 141.0
YYD3_k127_5647681_3 Domain of unknown function (DUF4340) - - - 0.00000000000645 79.0
YYD3_k127_5647681_4 Protein of unknown function (DUF721) - - - 0.000003595 56.0
YYD3_k127_5649239_0 conserved protein UCP033924 - - - 0.000000000000000000000000000000000000000007688 156.0
YYD3_k127_5654969_0 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009638 533.0
YYD3_k127_5654969_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000001549 199.0
YYD3_k127_5654969_2 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.0000000000000000000000000000000000003181 151.0
YYD3_k127_5654969_3 Domain of unknown function (DUF4032) - - - 0.000000000000000000000000000007538 124.0
YYD3_k127_5654969_4 Divalent cation transporter K06213 - - 0.00005899 51.0
YYD3_k127_5741590_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 340.0
YYD3_k127_5741590_1 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000001631 190.0
YYD3_k127_5741590_2 PFAM Nucleotidyl transferase K00966 - 2.7.7.13 0.0000000000000000000000000000000000003933 159.0
YYD3_k127_5741590_3 CYTH K05873 - 4.6.1.1 0.000000000000000000000000000005055 126.0
YYD3_k127_5746174_0 Belongs to the carbamoyltransferase HypF family K04656 - - 3.408e-216 692.0
YYD3_k127_5746174_1 TIGRFAM Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 339.0
YYD3_k127_5746174_2 cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000001971 258.0
YYD3_k127_5746174_3 PFAM Silent information regulator protein Sir2 K12410 - - 0.000000000000000000000000000000000000000000000000000000000004528 220.0
YYD3_k127_5746174_4 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000003723 192.0
YYD3_k127_5746174_5 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000002342 141.0
YYD3_k127_5746174_6 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00000000000000006197 85.0
YYD3_k127_5746174_7 Putative zinc-finger - - - 0.0000002268 65.0
YYD3_k127_5765238_0 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042802,GO:0042803,GO:0044237,GO:0044249,GO:0044271,GO:0046483,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 325.0
YYD3_k127_5765238_1 PFAM von Willebrand factor type A K01337 - 3.4.21.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001168 308.0
YYD3_k127_5765238_2 - - - - 0.000000000000000000008082 103.0
YYD3_k127_5765238_3 glutamine amidotransferase - - - 0.0000000000001815 83.0
YYD3_k127_5773100_0 LVIVD repeat - - - 0.00000000000000000000000000000000000001821 162.0
YYD3_k127_5773100_1 Hypothetical methyltransferase - - - 0.000000006812 66.0
YYD3_k127_5773100_2 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 - 3.5.99.2 0.00000002945 55.0
YYD3_k127_5792349_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000004471 214.0
YYD3_k127_5792349_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02033 - - 0.00000000000000000000000000000000000000000000000000000223 208.0
YYD3_k127_5792349_2 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 0.00000000000000000000000000000000000000000000000000000486 216.0
YYD3_k127_5792349_3 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000003463 203.0
YYD3_k127_5792349_4 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000007794 129.0
YYD3_k127_5796448_1 IgGFc binding protein - - - 0.000000004338 70.0
YYD3_k127_5796448_2 Chloramphenicol phosphotransferase-like protein K18554 - - 0.00000001886 69.0
YYD3_k127_5796448_3 chitin binding - - - 0.00000006832 66.0
YYD3_k127_5835033_0 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003218 282.0
YYD3_k127_5835033_1 Protein tyrosine kinase - - - 0.00000000000000000000000000001139 138.0
YYD3_k127_5853046_0 Protein of unknown function, DUF255 K06888 - - 1.241e-194 628.0
YYD3_k127_5853046_1 Mitochondrial biogenesis AIM24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 411.0
YYD3_k127_5853046_10 type II secretion system protein K02653 - - 0.000000000000000002135 100.0
YYD3_k127_5853046_11 - - - - 0.00000000000000002236 89.0
YYD3_k127_5853046_13 hydrolase of the alpha beta-hydrolase fold K07019 - - 0.00000000006455 65.0
YYD3_k127_5853046_14 general secretion pathway protein K02455 GO:0002790,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0016020,GO:0032940,GO:0033036,GO:0042886,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098776 - 0.00000001429 67.0
YYD3_k127_5853046_15 beta-galactosidase activity - - - 0.000004683 60.0
YYD3_k127_5853046_2 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 316.0
YYD3_k127_5853046_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 329.0
YYD3_k127_5853046_4 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 321.0
YYD3_k127_5853046_5 PFAM type II secretion system protein E - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001811 279.0
YYD3_k127_5853046_6 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007345 256.0
YYD3_k127_5853046_7 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000003438 263.0
YYD3_k127_5853046_8 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001671 239.0
YYD3_k127_5853046_9 HD domain - - - 0.000000000000000000000000000006486 136.0
YYD3_k127_5856905_0 COG0577 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 367.0
YYD3_k127_5856905_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003509 370.0
YYD3_k127_5856905_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 304.0
YYD3_k127_5856905_3 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001225 276.0
YYD3_k127_5856905_4 Subtilase family K17734 - - 0.0000000000000000000000000000000000000000000000000002088 214.0
YYD3_k127_5856905_5 EVE domain - - - 0.0000000000000000000000000000000000000000000000000002552 189.0
YYD3_k127_5856905_6 sigma factor antagonist activity K04757,K17752 - 2.7.11.1 0.000000000000000000001148 108.0
YYD3_k127_5856905_7 Belongs to the glycosyl hydrolase 43 family K20276 - - 0.0000001662 66.0
YYD3_k127_5856905_8 COG0456 Acetyltransferases K03789 - 2.3.1.128 0.0002055 53.0
YYD3_k127_5871344_0 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 524.0
YYD3_k127_5871344_1 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006197 502.0
YYD3_k127_5871344_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000000000000000000000000000000000000000000002732 252.0
YYD3_k127_5871344_3 - - - - 0.000000000000000000000000008888 119.0
YYD3_k127_5871344_4 rRNA processing K09140 - - 0.00000000000000000000005309 104.0
YYD3_k127_5871344_5 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K05970 - 3.1.1.53 0.00000000004686 77.0
YYD3_k127_5871344_6 Putative metal-binding motif - - - 0.000000002215 72.0
YYD3_k127_5902562_0 esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001491 282.0
YYD3_k127_5902562_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000001034 224.0
YYD3_k127_5902562_2 Anion-transporting ATPase - - - 0.00000000000000000000000000000001043 139.0
YYD3_k127_5902562_3 PHB/PHA accumulation regulator DNA-binding domain - - - 0.0000000000000000000000008489 109.0
YYD3_k127_5902562_4 Poly(hydroxyalcanoate) granule associated protein (phasin) - - - 0.00000000000002273 78.0
YYD3_k127_5923358_0 Belongs to the thiolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 458.0
YYD3_k127_5923358_1 PFAM FMN-dependent alpha-hydroxy acid dehydrogenase K00101,K00467,K16422 - 1.1.2.3,1.1.3.46,1.13.12.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 454.0
YYD3_k127_5923358_10 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000009623 229.0
YYD3_k127_5923358_11 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000001735 221.0
YYD3_k127_5923358_12 RNase_H superfamily K07502 - - 0.00000000000000000000000000000000000000000000000000001019 199.0
YYD3_k127_5923358_13 Acetyltransferase (GNAT) family K03395 - 2.3.1.60 0.00000000000000000000000000000000000000000000000002374 197.0
YYD3_k127_5923358_14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000001817 181.0
YYD3_k127_5923358_15 PFAM periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000008821 185.0
YYD3_k127_5923358_16 Outer membrane receptor proteins mostly Fe transport K02014 - - 0.000000000000000000000000000000000000000000000004235 196.0
YYD3_k127_5923358_17 COGs COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.00000000000000000000000000000000000001376 163.0
YYD3_k127_5923358_18 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000004937 164.0
YYD3_k127_5923358_19 modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000004801 152.0
YYD3_k127_5923358_2 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 419.0
YYD3_k127_5923358_20 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000054 133.0
YYD3_k127_5923358_21 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000007804 139.0
YYD3_k127_5923358_22 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000001413 113.0
YYD3_k127_5923358_23 Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency K06928 - 3.6.1.15 0.00000000000000000000004739 108.0
YYD3_k127_5923358_24 Protein of unknown function, DUF393 - - - 0.000000000000000000006705 102.0
YYD3_k127_5923358_25 phosphorelay signal transduction system - - - 0.000000000000000002803 100.0
YYD3_k127_5923358_26 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000004197 70.0
YYD3_k127_5923358_27 Cytochrome C biogenesis protein - - - 0.00001961 57.0
YYD3_k127_5923358_28 PFAM ATP-binding region ATPase domain protein - - - 0.0003376 52.0
YYD3_k127_5923358_3 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 392.0
YYD3_k127_5923358_4 Carboxyl transferase domain K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 359.0
YYD3_k127_5923358_5 beta-lactamase K06897 - 2.5.1.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 316.0
YYD3_k127_5923358_6 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000008551 269.0
YYD3_k127_5923358_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009114 278.0
YYD3_k127_5923358_8 MOSC N-terminal beta barrel domain K07140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000076 243.0
YYD3_k127_5923358_9 PFAM cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000001131 263.0
YYD3_k127_5944907_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family K13687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 366.0
YYD3_k127_5944907_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 299.0
YYD3_k127_5944907_2 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.000000000000000000000000000117 119.0
YYD3_k127_5944907_3 PFAM Cys Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.0000000000000000001294 91.0
YYD3_k127_5955530_0 SMART Integrin alpha beta-propellor repeat protein - - - 8.373e-195 663.0
YYD3_k127_5955530_1 Thrombospondin type 3 repeat - - - 0.0000000000000000000000000000000297 148.0
YYD3_k127_5955530_2 Putative restriction endonuclease - - - 0.0000000000000000000000000000001871 131.0
YYD3_k127_5955530_3 - - - - 0.00000000000000003863 91.0
YYD3_k127_5959538_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 4.534e-319 1009.0
YYD3_k127_5959538_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K12266 - - 0.00000000000000000000000000000000000000000000000000000000000000003346 230.0
YYD3_k127_5959538_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters damaged by oxidative and nitrosative stress conditions K07322 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0018282,GO:0018283,GO:0019538,GO:0022607,GO:0030091,GO:0031163,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0071704,GO:0071840,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000001635 202.0
YYD3_k127_5959538_3 Multicopper oxidase K04753 - - 0.00000000000000000000000000003713 134.0
YYD3_k127_5959538_4 von Willebrand factor (vWF) type A domain - - - 0.000000000000007825 88.0
YYD3_k127_596561_0 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 562.0
YYD3_k127_596561_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 290.0
YYD3_k127_596561_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000001483 243.0
YYD3_k127_596561_3 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000000000000378 156.0
YYD3_k127_596561_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000003005 102.0
YYD3_k127_596561_5 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000001338 101.0
YYD3_k127_596561_6 - - - - 0.000000001545 65.0
YYD3_k127_596561_7 Histidine kinase - - - 0.0004688 51.0
YYD3_k127_5976399_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 608.0
YYD3_k127_5976399_1 PFAM response regulator receiver K07667 - - 0.000000000000000000000000000000000000000000000000000000000007343 214.0
YYD3_k127_5976399_2 RNA recognition motif - - - 0.000000000000000000000000011 113.0
YYD3_k127_60052_0 Bacterial extracellular solute-binding protein K10108,K15770 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 572.0
YYD3_k127_60052_1 Belongs to the ABC transporter superfamily K05816,K10111,K10112 - 3.6.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007912 350.0
YYD3_k127_60052_2 Sugar ABC transporter permease K10109,K15770,K15771 - - 0.0000000000000000000000000000000000000000000000000001845 211.0
YYD3_k127_6008742_0 Surface antigen variable number K07277 - - 0.0000000000000000000000000000000000000000000000003811 193.0
YYD3_k127_6008742_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000425 167.0
YYD3_k127_6008742_2 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000005033 83.0
YYD3_k127_6008742_3 unfolded protein binding K06142 - - 0.00001749 58.0
YYD3_k127_6027695_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 454.0
YYD3_k127_6027695_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 392.0
YYD3_k127_6027695_10 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000001883 208.0
YYD3_k127_6027695_11 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000004836 197.0
YYD3_k127_6027695_12 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000001238 207.0
YYD3_k127_6027695_13 - - - - 0.0000000000000000000000000000000000000000000009968 186.0
YYD3_k127_6027695_14 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000005516 171.0
YYD3_k127_6027695_15 Histidine kinase K02668,K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000108 184.0
YYD3_k127_6027695_16 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000005932 175.0
YYD3_k127_6027695_17 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000001811 144.0
YYD3_k127_6027695_18 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.00000001876 68.0
YYD3_k127_6027695_19 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000004618 53.0
YYD3_k127_6027695_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 360.0
YYD3_k127_6027695_20 Prokaryotic N-terminal methylation motif - - - 0.000007901 55.0
YYD3_k127_6027695_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002737 326.0
YYD3_k127_6027695_4 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 301.0
YYD3_k127_6027695_5 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 309.0
YYD3_k127_6027695_6 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007273 276.0
YYD3_k127_6027695_7 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002251 268.0
YYD3_k127_6027695_8 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000134 241.0
YYD3_k127_6027695_9 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000009005 227.0
YYD3_k127_6029021_0 Thiopurine S-methyltransferase (TPMT) - - - 0.0000000000000000000000000000000000000000000000000000000003596 210.0
YYD3_k127_6029021_1 SMART Integrin alpha beta-propellor repeat protein - - - 0.0000000000000000000000000000000000000000000127 188.0
YYD3_k127_6029021_2 SMART Integrin alpha beta-propellor repeat protein - - - 0.0000000000000000000000000000000000000000000484 186.0
YYD3_k127_6029021_3 isocitrate K01637 - 4.1.3.1 0.00000000000000000000000000001951 117.0
YYD3_k127_6029021_4 Thrombospondin type 3 repeat - - - 0.000000000000000000000000003857 130.0
YYD3_k127_6029021_5 Thrombospondin type 3 repeat - - - 0.00000000000000000000000225 121.0
YYD3_k127_6029021_7 Lamin Tail Domain - - - 0.000000000000000002756 101.0
YYD3_k127_6029021_8 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.00000000001064 79.0
YYD3_k127_6041873_0 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000899 589.0
YYD3_k127_6041873_1 COG0557 Exoribonuclease R K01147 GO:0000175,GO:0000178,GO:0000932,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354,GO:1990904 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001028 270.0
YYD3_k127_6041873_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000004439 195.0
YYD3_k127_6041873_3 PFAM Rieske 2Fe-2S K00363 - 1.7.1.15 0.000000000000000002833 90.0
YYD3_k127_6043194_0 SMART Integrin alpha beta-propellor repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 537.0
YYD3_k127_6043194_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000002291 174.0
YYD3_k127_6043194_2 Histidine kinase - - - 0.00000000000000000000000000000000002261 155.0
YYD3_k127_6043194_3 domain protein K01186 - 3.2.1.18 0.0000000000001151 86.0
YYD3_k127_6050688_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004298 603.0
YYD3_k127_6050688_1 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 512.0
YYD3_k127_6050688_2 Domain of unknown function (DUF4178) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 356.0
YYD3_k127_6050688_3 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002773 297.0
YYD3_k127_6050688_4 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000000000008569 235.0
YYD3_k127_6050688_5 Domain of Unknown Function (DUF350) - - - 0.000000000002724 74.0
YYD3_k127_6060856_0 Cephalosporin hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 317.0
YYD3_k127_6060856_1 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004145 283.0
YYD3_k127_6060856_2 serine acetyltransferase K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000009566 243.0
YYD3_k127_6060856_3 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000003916 130.0
YYD3_k127_6060856_4 Belongs to the DegT DnrJ EryC1 family K05957 - 2.6.1.50 0.00000000002188 74.0
YYD3_k127_6060856_5 Glycosyltransferase like family 2 - - - 0.000001308 57.0
YYD3_k127_6060961_0 homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 1.834e-218 694.0
YYD3_k127_6060961_1 Membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.0000000000000000000000000000000000000000000002217 191.0
YYD3_k127_6060961_2 chlorophyll binding K02051,K03286 - - 0.0000000000000000000000000000000000001101 150.0
YYD3_k127_6060961_3 von Willebrand factor, type A - - - 0.00000000000000000000000000000162 138.0
YYD3_k127_6060961_4 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000001261 68.0
YYD3_k127_6060961_5 - - - - 0.0001366 55.0
YYD3_k127_6061869_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 2.323e-286 895.0
YYD3_k127_6061869_1 PFAM carboxyl transferase K01615 - 4.1.1.70 9.239e-239 779.0
YYD3_k127_6061869_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000601 613.0
YYD3_k127_6061869_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008931 522.0
YYD3_k127_6061869_4 An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 505.0
YYD3_k127_6061869_5 tRNA synthetase class II core domain (G, H, P, S and T) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 413.0
YYD3_k127_6061869_6 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000008198 247.0
YYD3_k127_6061869_7 PFAM PhoH family protein K06217 - - 0.000000000000000000000000000000000000000000000000007817 187.0
YYD3_k127_6061869_8 Cys/Met metabolism PLP-dependent enzyme K00812 - 2.6.1.1 0.0000000000000000000000000000000000000002263 157.0
YYD3_k127_6061869_9 ligase activity, forming carbon-carbon bonds K00627,K00645,K01572,K02160 - 2.3.1.12,2.3.1.39,4.1.1.3 0.0000000000000000004365 103.0
YYD3_k127_6066697_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006417 305.0
YYD3_k127_6066697_1 Belongs to the peptidase S8 family - - - 0.0001181 52.0
YYD3_k127_6069800_0 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.00000000000000005109 89.0
YYD3_k127_6069800_1 - - - - 0.0000002722 58.0
YYD3_k127_6072463_0 AAA-like domain - - - 1.662e-222 705.0
YYD3_k127_6072463_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 366.0
YYD3_k127_6072463_2 AAA domain (Cdc48 subfamily) K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009387 293.0
YYD3_k127_6072463_3 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.000000000000000000000000000000000153 143.0
YYD3_k127_6072463_4 - - - - 0.00001109 55.0
YYD3_k127_6073699_0 Calcineurin-like phosphoesterase K07099 - - 0.0000000000000000000000000000000000000000000001272 192.0
YYD3_k127_6073699_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000002966 152.0
YYD3_k127_6073699_2 D-alanine [D-alanyl carrier protein] ligase activity K16428,K16429 - - 0.0005886 53.0
YYD3_k127_6078289_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000112 211.0
YYD3_k127_6078289_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000005116 159.0
YYD3_k127_6078289_2 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00006758 55.0
YYD3_k127_607875_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 2.689e-274 875.0
YYD3_k127_607875_1 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 325.0
YYD3_k127_607875_2 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000000000000000008949 223.0
YYD3_k127_607875_3 [2Fe-2S] binding domain K03518,K13483 - 1.2.5.3 0.000000000000000000000000000000000000000000000000006516 188.0
YYD3_k127_607875_4 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.00000000000000000000000000001167 127.0
YYD3_k127_608410_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 5.649e-307 983.0
YYD3_k127_608410_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 331.0
YYD3_k127_6094190_0 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 598.0
YYD3_k127_6094190_1 Metallo-peptidase family M12B Reprolysin-like - - - 0.0000000000004874 84.0
YYD3_k127_6115537_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 3.298e-206 661.0
YYD3_k127_6115537_1 Ribonuclease E/G family K08300,K08301 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008996,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 377.0
YYD3_k127_6115537_2 Thioesterase superfamily - - - 0.0000000000000000000000000000000001045 139.0
YYD3_k127_6115537_3 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000522 112.0
YYD3_k127_6115537_4 FeoA K04758 - - 0.00004932 57.0
YYD3_k127_6121457_0 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004284 280.0
YYD3_k127_6121457_1 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000996 273.0
YYD3_k127_6121457_2 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000001205 165.0
YYD3_k127_6131722_0 Cytochrome bd-type quinol oxidase subunit 1 K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 600.0
YYD3_k127_6131722_1 COG1294 Cytochrome bd-type quinol oxidase subunit 2 K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006546 414.0
YYD3_k127_6131722_2 Protein tyrosine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002564 284.0
YYD3_k127_6131722_3 Belongs to the peptidase S51 family K05995 GO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:0140096,GO:1901564 3.4.13.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000006495 261.0
YYD3_k127_6131722_4 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009977 263.0
YYD3_k127_6136057_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 542.0
YYD3_k127_6136057_1 PFAM NAD-dependent epimerase dehydratase K01784,K02473 - 5.1.3.2,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 369.0
YYD3_k127_6136057_2 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.000000000000000000000000000000005483 139.0
YYD3_k127_6136057_3 epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000009164 121.0
YYD3_k127_6145099_0 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 4.434e-225 726.0
YYD3_k127_6145099_1 Tricorn protease C1 domain K08676 - - 3.281e-206 694.0
YYD3_k127_6145099_2 polyphosphate kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 493.0
YYD3_k127_6145099_3 PFAM Alcohol dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 362.0
YYD3_k127_6145099_5 (Rhomboid) family - - - 0.0000000000000000000000000000000000000000000161 182.0
YYD3_k127_6145099_6 Transcription factor zinc-finger K09981 - - 0.000000000000000000000000000000000000000002329 182.0
YYD3_k127_6145099_7 membrane K08978 - - 0.0000000000000003097 93.0
YYD3_k127_6145099_8 protein kinase activity - - - 0.0000000000000004479 80.0
YYD3_k127_6145099_9 COG1042 Acyl-CoA synthetase (NDP forming) - - - 0.00000001063 63.0
YYD3_k127_6201990_0 Subtilase family K17734 - - 0.00000000000000000000000000000000000000000000000000000000001048 235.0
YYD3_k127_6201990_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000002235 191.0
YYD3_k127_6201990_2 YMGG-like Gly-zipper - - - 0.00000000000000000000000000000000000000001763 159.0
YYD3_k127_6201990_4 - - - - 0.0000000000001623 79.0
YYD3_k127_6201990_5 - - - - 0.000000003844 68.0
YYD3_k127_6207630_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 4.4e-261 850.0
YYD3_k127_6207630_1 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 520.0
YYD3_k127_6207630_2 Transglycosylase SLT domain K08309 - - 0.00000000000000000000000000000145 141.0
YYD3_k127_6207630_3 arylsulfatase activity K07014 - - 0.000000000000000000000000000002025 134.0
YYD3_k127_6207630_4 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000001201 134.0
YYD3_k127_6207630_5 lipolytic protein G-D-S-L family K20306 - - 0.0000000000000000002847 100.0
YYD3_k127_6207630_6 Modulates RecA activity K03565 - - 0.0000000002628 67.0
YYD3_k127_6207630_7 oligosaccharyl transferase activity - - - 0.000004882 55.0
YYD3_k127_6212010_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 5.501e-318 986.0
YYD3_k127_6212010_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000117 75.0
YYD3_k127_6212063_0 GlcNAc-PI de-N-acetylase - - - 1.064e-222 732.0
YYD3_k127_6212063_1 Sodium:solute symporter family - - - 6.399e-206 656.0
YYD3_k127_6212063_10 FG-GAP repeat protein - - - 0.00000005472 64.0
YYD3_k127_6212063_2 Glycosyl transferase 4-like K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 346.0
YYD3_k127_6212063_3 Bacillithiol biosynthesis BshC K22136 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 344.0
YYD3_k127_6212063_4 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000486 280.0
YYD3_k127_6212063_5 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001226 275.0
YYD3_k127_6212063_6 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003406 275.0
YYD3_k127_6212063_7 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - 0.000000000000000000000000000000000825 152.0
YYD3_k127_6212063_8 belongs to the thioredoxin family K03671,K05838 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000009445 125.0
YYD3_k127_6212063_9 C-terminal domain of 1-Cys peroxiredoxin - - - 0.00000000000006836 74.0
YYD3_k127_6231089_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 1.419e-207 695.0
YYD3_k127_6231089_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000003372 244.0
YYD3_k127_6231089_2 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000003232 199.0
YYD3_k127_6231089_3 Phage regulatory protein - - - 0.000000000000000000000000000000000000185 151.0
YYD3_k127_6231089_4 - - - - 0.0000000000000000000000008668 115.0
YYD3_k127_6231089_5 Histidine kinase K07315 - 3.1.3.3 0.0000000000000001861 84.0
YYD3_k127_6231089_6 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000008334 55.0
YYD3_k127_6259610_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 309.0
YYD3_k127_6259610_1 NAD binding K00333,K05579,K13378 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000006163 164.0
YYD3_k127_6259610_2 NADH-quinone oxidoreductase chain L K00341,K05577 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000000000000000000000003105 161.0
YYD3_k127_6259610_3 4Fe-4S dicluster domain K00338,K02573,K03941 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3,1.6.99.3 0.0000000000000000000002213 112.0
YYD3_k127_6259610_4 Belongs to the complex I subunit 6 family K05578 - 1.6.5.3 0.00000000000008844 82.0
YYD3_k127_6259610_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.0000000000004862 79.0
YYD3_k127_6277992_0 UvrD REP helicase K16898 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 387.0
YYD3_k127_6277992_1 Methyltransferase K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000004621 185.0
YYD3_k127_6277992_2 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000007447 197.0
YYD3_k127_6277992_3 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000002823 172.0
YYD3_k127_6277992_4 PD-(D/E)XK nuclease superfamily K07465 - - 0.0000002669 60.0
YYD3_k127_630221_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008008 530.0
YYD3_k127_630221_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000004424 284.0
YYD3_k127_630221_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000173 206.0
YYD3_k127_6327862_0 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 373.0
YYD3_k127_6327862_1 CobQ CobB MinD ParA nucleotide binding domain K08252,K13661,K16554,K16692 - 2.7.10.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 318.0
YYD3_k127_6327862_2 Heparinase II/III N-terminus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 301.0
YYD3_k127_6327862_3 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000000000000001083 270.0
YYD3_k127_6327862_4 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.0000000000000000000000000000000000000000000000000000000008844 204.0
YYD3_k127_6327862_5 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000001761 137.0
YYD3_k127_6327862_6 Periplasmic protein involved in polysaccharide export K01991 - - 0.00000000000000002491 96.0
YYD3_k127_6332826_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002067 309.0
YYD3_k127_6332826_1 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000000000001388 208.0
YYD3_k127_6332826_2 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000000001863 205.0
YYD3_k127_6332826_3 protein conserved in bacteria K09778 - - 0.00000000000000000000000000000000000000000000000005576 188.0
YYD3_k127_6332826_4 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000001929 143.0
YYD3_k127_6332826_5 Sulfatase - - - 0.00007794 54.0
YYD3_k127_6332826_6 Uncharacterised nucleotidyltransferase - - - 0.0008377 53.0
YYD3_k127_6352269_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009333,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 487.0
YYD3_k127_6352269_1 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 444.0
YYD3_k127_6352269_2 Cupin domain - - - 0.0000000000000000000000000001711 121.0
YYD3_k127_6352269_3 nitric oxide dioxygenase activity K00528,K05784 GO:0000166,GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004324,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006000,GO:0006001,GO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010035,GO:0016043,GO:0016052,GO:0016226,GO:0016491,GO:0016730,GO:0016731,GO:0019318,GO:0019320,GO:0022607,GO:0031163,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901363,GO:1901575,GO:1901700 1.18.1.2,1.19.1.1 0.000000005667 58.0
YYD3_k127_6352269_4 Putative zinc- or iron-chelating domain K18475 - - 0.00000001771 64.0
YYD3_k127_6358964_0 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001466 253.0
YYD3_k127_6358964_1 HupE / UreJ protein K03192 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000002331 239.0
YYD3_k127_6358964_2 HupE / UreJ protein - - - 0.0000000000000000000000000000000000000000000001825 179.0
YYD3_k127_6358964_3 HupE / UreJ protein - - - 0.00000000000000000000000000000000002669 152.0
YYD3_k127_6358964_4 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000005463 143.0
YYD3_k127_6374792_0 Glutamine synthetase type III K01915 - 6.3.1.2 4.596e-301 939.0
YYD3_k127_6383876_0 Cation transport protein K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000000008965 259.0
YYD3_k127_6383876_1 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000006406 209.0
YYD3_k127_6383876_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000001159 186.0
YYD3_k127_6383876_3 Mechanosensitive ion channel - - - 0.0000000000001647 84.0
YYD3_k127_6383876_4 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 0.0000000003064 61.0
YYD3_k127_6390500_0 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 1.544e-215 703.0
YYD3_k127_6390500_1 Saccharopine dehydrogenase NADP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 318.0
YYD3_k127_6390500_2 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000007823 223.0
YYD3_k127_6390500_3 DNA polymerase K02347 - - 0.00000001221 61.0
YYD3_k127_6390500_4 BlaR1 peptidase M56 - - - 0.0009954 50.0
YYD3_k127_6398478_0 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000644 342.0
YYD3_k127_6398478_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005304 261.0
YYD3_k127_6398478_2 Esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000051 102.0
YYD3_k127_6401282_0 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000003736 180.0
YYD3_k127_6401282_1 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.00000000000000000000000000000000358 134.0
YYD3_k127_6401282_2 Alpha beta - - - 0.0000000000000000000000000000000178 141.0
YYD3_k127_6411256_0 Glycosyl hydrolases family 39 - - - 0.0000000000000003425 93.0
YYD3_k127_6415901_0 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000001755 166.0
YYD3_k127_6415901_1 Insulinase (Peptidase family M16) K07263,K07623 - - 0.000003684 60.0
YYD3_k127_6419965_0 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008183 271.0
YYD3_k127_6419965_1 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000001472 199.0
YYD3_k127_6419965_2 transcriptional regulator - - - 0.00000000000000000000001293 112.0
YYD3_k127_6419965_3 - - - - 0.00000000000000000007068 98.0
YYD3_k127_642700_0 Domains in Na-Ca exchangers and integrin-beta4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004605 450.0
YYD3_k127_642700_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 324.0
YYD3_k127_642700_2 Zn_pept K05996 - 3.4.17.18 0.000000000000000000000000000000000000000000000000000000000000001961 248.0
YYD3_k127_642700_3 Fibronectin type 3 domain - - - 0.0000000000000000000000000000000000000000000008887 191.0
YYD3_k127_642700_4 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.00000000000000000000000000000000000003604 150.0
YYD3_k127_6428121_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K07306,K17050 - 1.7.5.1,1.8.5.3 0.0 1349.0
YYD3_k127_6428121_1 PFAM Cytochrome b b6 domain - - - 9.237e-197 636.0
YYD3_k127_6428121_11 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000003696 65.0
YYD3_k127_6428121_12 Hemerythrin HHE cation binding domain - - - 0.000000001215 65.0
YYD3_k127_6428121_13 chaperone-mediated protein complex assembly - - - 0.000000007469 68.0
YYD3_k127_6428121_14 Plasmid stabilization system - - - 0.00000004849 63.0
YYD3_k127_6428121_15 YwiC-like protein - - - 0.00001081 57.0
YYD3_k127_6428121_16 chitinase K01183 - 3.2.1.14 0.0005318 53.0
YYD3_k127_6428121_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 537.0
YYD3_k127_6428121_3 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 540.0
YYD3_k127_6428121_4 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 324.0
YYD3_k127_6428121_5 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000008875 220.0
YYD3_k127_6428121_6 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.000000000000000000000000000000000000000004341 162.0
YYD3_k127_6428121_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000002066 160.0
YYD3_k127_6428121_8 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.00000000000005827 86.0
YYD3_k127_6428121_9 Cytochrome c K00373,K00405,K17052 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - 0.0000000000001339 81.0
YYD3_k127_6431404_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 559.0
YYD3_k127_6431404_1 SMART helicase c2 K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 539.0
YYD3_k127_6431404_2 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000005095 205.0
YYD3_k127_6431404_3 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000001178 175.0
YYD3_k127_6445700_0 Cytochrome C and Quinol oxidase polypeptide I K15862 - 1.9.3.1 0.0 1116.0
YYD3_k127_6445700_1 Sigma-54 interaction domain K07713,K07714,K07715 - - 0.0000000000000000000000000000000000000000000000000001741 200.0
YYD3_k127_6445700_2 Cytochrome c K00406 - - 0.000000000000000000000000000000000000000000000000001923 191.0
YYD3_k127_6445700_3 IG-like fold at C-terminal of FixG, putative oxidoreductase - - - 0.00000000000000000000000000000000000000000001657 177.0
YYD3_k127_6445700_4 cyclic nucleotide binding K01420,K10914,K21556,K21562 - - 0.000000000000000000001839 104.0
YYD3_k127_6445700_5 PFAM biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.00000003758 65.0
YYD3_k127_64971_0 Binding-protein-dependent transport system inner membrane component K02037,K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 601.0
YYD3_k127_64971_1 inorganic phosphate transmembrane transporter activity K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 535.0
YYD3_k127_64971_2 COG0226 ABC-type phosphate transport system periplasmic K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 461.0
YYD3_k127_64971_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 GO:0003674,GO:0003824,GO:0005215,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015114,GO:0015318,GO:0015399,GO:0015405,GO:0015415,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0034220,GO:0035435,GO:0042623,GO:0042626,GO:0043225,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0098660,GO:0098661,GO:0099133 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 389.0
YYD3_k127_64971_4 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002415 254.0
YYD3_k127_64971_5 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000004664 251.0
YYD3_k127_64971_6 PFAM response regulator receiver K07657,K07664 - - 0.00000000000000000000000000000000000000000000000000000000000117 227.0
YYD3_k127_64971_7 Phosphate-selective porin O and P - - - 0.00000000000000000000000000000000006164 149.0
YYD3_k127_6513511_0 FeoA - - - 6.19e-265 840.0
YYD3_k127_6513511_1 iron ion homeostasis K03322,K03709,K04758 - - 0.0000000000000000000000000000000000000000000000000000000000000000002571 240.0
YYD3_k127_6552342_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007746 466.0
YYD3_k127_6552342_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 408.0
YYD3_k127_6552342_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 403.0
YYD3_k127_6552342_3 ATP-grasp domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003111 361.0
YYD3_k127_6579451_0 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 303.0
YYD3_k127_6579451_1 GTP cyclohydrolase I - - - 0.0000000000000000000000000000000000000000000001075 180.0
YYD3_k127_6579451_2 PFAM Amidohydrolase 3 - - - 0.0000000000000000000000000000000000000000001011 180.0
YYD3_k127_6579451_3 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000009456 140.0
YYD3_k127_6579451_4 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 GO:0003674,GO:0003824,GO:0004150,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0044424,GO:0044444,GO:0044464 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000004717 110.0
YYD3_k127_6624914_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 5.686e-216 686.0
YYD3_k127_6624914_1 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004353 615.0
YYD3_k127_6624914_10 Uncharacterised protein family (UPF0158) - - - 0.000000000000009964 81.0
YYD3_k127_6624914_2 Deoxyribodipyrimidine photo-lyase-related protein K06876 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 487.0
YYD3_k127_6624914_3 amine oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004538 406.0
YYD3_k127_6624914_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003941 369.0
YYD3_k127_6624914_5 PFAM Peptidase M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005494 291.0
YYD3_k127_6624914_6 aminopeptidase activity K19689 - - 0.000000000000000000000000000000000000000000000006339 189.0
YYD3_k127_6624914_7 spore germination K07790 - - 0.0000000000000000000000000000000000000000000008621 180.0
YYD3_k127_6624914_8 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000237 161.0
YYD3_k127_6624914_9 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000009167 118.0
YYD3_k127_6645667_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 9.147e-310 979.0
YYD3_k127_6645667_1 Transmembrane secretion effector K08225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 346.0
YYD3_k127_6645667_2 phosphoribosylformylglycinamidine synthase activity K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006520,GO:0006541,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016884,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 301.0
YYD3_k127_6645667_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000004517 153.0
YYD3_k127_6645667_4 Protein of unknown function (DUF1579) - - - 0.0000000000000000000000000000005352 129.0
YYD3_k127_6645667_5 Phospholipase D. Active site motifs. K06132 - - 0.00000000000000000000000000002986 125.0
YYD3_k127_6645667_6 Cytidylate kinase-like family - - - 0.00000000000000000000001278 117.0
YYD3_k127_6645667_7 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.00000000000000000000013 109.0
YYD3_k127_6645667_8 - - - - 0.00003064 52.0
YYD3_k127_6648193_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003737 294.0
YYD3_k127_6648193_1 serine threonine protein kinase K08884,K11912,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000001027 184.0
YYD3_k127_6648193_2 amidohydrolase K07045 - - 0.0000000000000000000000000009067 132.0
YYD3_k127_6653847_0 Amylo-alpha-1,6-glucosidase - - - 6.649e-237 755.0
YYD3_k127_6653847_1 choline dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007172 563.0
YYD3_k127_6653847_2 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000001763 247.0
YYD3_k127_6653847_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000003912 252.0
YYD3_k127_6653847_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000002214 221.0
YYD3_k127_6653847_5 Acyl-transferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000002979 196.0
YYD3_k127_6653847_6 - - - - 0.000000000000000000000000000007972 134.0
YYD3_k127_6653847_7 DinB family - - - 0.0000000000000000000000003451 119.0
YYD3_k127_6729674_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1104.0
YYD3_k127_6729674_1 GTP-binding protein TypA K06207 - - 9.407e-264 824.0
YYD3_k127_6729674_10 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001351 277.0
YYD3_k127_6729674_11 Squalene/phytoene synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006362 260.0
YYD3_k127_6729674_12 serine acetyltransferase K00640 GO:0000096,GO:0000097,GO:0000098,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009087,GO:0009987,GO:0016053,GO:0016054,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000782 236.0
YYD3_k127_6729674_13 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000001643 213.0
YYD3_k127_6729674_14 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000001117 203.0
YYD3_k127_6729674_15 TIGRFAM squalene-associated FAD-dependent desaturase - - - 0.0000000000000000000000000000000000000000000000000004699 209.0
YYD3_k127_6729674_16 DHHA1 domain protein K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000001682 206.0
YYD3_k127_6729674_17 Isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000003163 172.0
YYD3_k127_6729674_18 Squalene phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000001726 177.0
YYD3_k127_6729674_19 PASTA domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000002133 173.0
YYD3_k127_6729674_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.886e-213 692.0
YYD3_k127_6729674_20 molybdopterin synthase activity K03635,K21142 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0030366,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657 2.8.1.12 0.0000000000000000000000000000000000000001361 159.0
YYD3_k127_6729674_21 Bacterial regulatory protein, Fis family K07715 - - 0.00000000000000000000000000000000000001076 156.0
YYD3_k127_6729674_22 Exonuclease - - - 0.00000000000000000000000000000000001206 142.0
YYD3_k127_6729674_23 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.0000000000000000000000000000000002127 151.0
YYD3_k127_6729674_24 Tetratricopeptide repeat - - - 0.0000000000000000000000000000004277 134.0
YYD3_k127_6729674_25 Hydrolase, P-loop family K06925 - - 0.000000000000000000000001397 120.0
YYD3_k127_6729674_26 - - - - 0.0000000000000000000598 98.0
YYD3_k127_6729674_27 - - - - 0.0000000000000002771 90.0
YYD3_k127_6729674_28 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.00000000000007266 84.0
YYD3_k127_6729674_29 Molybdopterin K03636 - - 0.00000004376 65.0
YYD3_k127_6729674_3 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 556.0
YYD3_k127_6729674_30 Peptidase S24-like - - - 0.0000002343 60.0
YYD3_k127_6729674_4 Endoribonuclease that initiates mRNA decay K18682 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 445.0
YYD3_k127_6729674_5 Dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 426.0
YYD3_k127_6729674_6 Protein of unknown function (DUF1343) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006807 418.0
YYD3_k127_6729674_7 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000825 367.0
YYD3_k127_6729674_8 SPFH domain-Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 348.0
YYD3_k127_6729674_9 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005863 320.0
YYD3_k127_674591_0 COG0841 Cation multidrug efflux pump K18902,K19594 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003562 628.0
YYD3_k127_6790077_0 Carboxyl transferase domain - - - 9.291e-278 860.0
YYD3_k127_6790077_1 6-phosphogluconolactonase activity - - - 4.492e-270 863.0
YYD3_k127_6790077_2 PFAM ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 435.0
YYD3_k127_6790077_3 PFAM biotin lipoyl attachment domain-containing protein - - - 0.00000000000000000000000000000000000000000006898 182.0
YYD3_k127_6790077_4 Thioredoxin-like domain - - - 0.00000000000383 78.0
YYD3_k127_6840496_0 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 385.0
YYD3_k127_6840496_1 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009465 320.0
YYD3_k127_6840496_2 ammonia-lyase activity K01745 - 4.3.1.3 0.000000000000000000000000000000000000000002079 165.0
YYD3_k127_6840496_3 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000013 149.0
YYD3_k127_6840496_4 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000007151 136.0
YYD3_k127_6847828_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 409.0
YYD3_k127_6847828_1 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 302.0
YYD3_k127_6847828_2 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000126 145.0
YYD3_k127_6847828_3 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.0000000000000000000000000000005454 128.0
YYD3_k127_6847828_4 phosphoenolpyruvate-dependent sugar phosphotransferase system K02784,K08485,K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000005173 104.0
YYD3_k127_6847828_5 Regulatory protein - - - 0.0000000000000000000832 103.0
YYD3_k127_6847828_6 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000005002 50.0
YYD3_k127_6847828_7 gas vesicle protein - - - 0.0007567 47.0
YYD3_k127_6855759_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 572.0
YYD3_k127_6855759_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007104 533.0
YYD3_k127_6855759_10 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000002614 138.0
YYD3_k127_6855759_2 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 404.0
YYD3_k127_6855759_3 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 392.0
YYD3_k127_6855759_4 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001839 264.0
YYD3_k127_6855759_5 Formyl transferase K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000003255 229.0
YYD3_k127_6855759_6 response regulator K02477 - - 0.0000000000000000000000000000000000000000000000000000000000000001973 237.0
YYD3_k127_6855759_7 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000001407 220.0
YYD3_k127_6855759_8 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000001527 215.0
YYD3_k127_6855759_9 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000000000000000000004412 196.0
YYD3_k127_6871_0 Domain of unknown function (DUF3372) K01200 - 3.2.1.41 0.0 1266.0
YYD3_k127_6871_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 1.943e-204 649.0
YYD3_k127_6871_10 Belongs to the P-Pant transferase superfamily K06133 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000000000000000000000002483 166.0
YYD3_k127_6871_11 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000005736 170.0
YYD3_k127_6871_12 COG1670 Acetyltransferases, including N-acetylases of - - - 0.000000000000000000000000000000000003928 151.0
YYD3_k127_6871_13 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.0000000000000000000000001296 108.0
YYD3_k127_6871_14 - - - - 0.00000000000000000000004062 107.0
YYD3_k127_6871_15 Plasmid stabilization system - - - 0.0000008539 55.0
YYD3_k127_6871_16 COG0457 FOG TPR repeat - - - 0.00002958 56.0
YYD3_k127_6871_17 Putative adhesin - - - 0.0007536 51.0
YYD3_k127_6871_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 539.0
YYD3_k127_6871_3 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 408.0
YYD3_k127_6871_4 Belongs to the glycosyl hydrolase 13 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 329.0
YYD3_k127_6871_5 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001428 269.0
YYD3_k127_6871_6 Predicted nucleotidyltransferase K07074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006102 275.0
YYD3_k127_6871_7 SelR domain K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000001444 211.0
YYD3_k127_6871_8 LPXTG-motif cell wall anchor domain - - - 0.00000000000000000000000000000000000000000000000000006612 195.0
YYD3_k127_6871_9 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - - - 0.0000000000000000000000000000000000000000000000004274 194.0
YYD3_k127_704124_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 4.013e-299 945.0
YYD3_k127_704124_1 PFAM Type II secretion system protein E K02652 - - 1.085e-219 716.0
YYD3_k127_704124_10 PFAM Fimbrial assembly family protein K02663 - - 0.0005216 53.0
YYD3_k127_704124_2 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001447 283.0
YYD3_k127_704124_3 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000006368 195.0
YYD3_k127_704124_4 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000006521 121.0
YYD3_k127_704124_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000003367 106.0
YYD3_k127_704124_6 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000003189 102.0
YYD3_k127_704124_7 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.0000000000000000005449 93.0
YYD3_k127_704124_8 Pilus assembly protein K02662 - - 0.00000000000000005046 93.0
YYD3_k127_72766_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 458.0
YYD3_k127_72766_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 366.0
YYD3_k127_72766_2 Calcineurin-like phosphoesterase K03269 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0019897,GO:0019898,GO:0030145,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.54 0.0000000000000000000000000000000000004939 159.0
YYD3_k127_72766_3 NYN domain - - - 0.0000000000000000000000000000000001297 136.0
YYD3_k127_72766_4 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.00000000000000000005824 89.0
YYD3_k127_742424_0 LytB protein K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 436.0
YYD3_k127_742424_1 PFAM Transglycosylase SLT domain K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 366.0
YYD3_k127_742424_2 FIST C domain - GO:0008150,GO:0040007 - 0.00000000000000000000000000000000000000000000000000009766 215.0
YYD3_k127_742424_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000001551 187.0
YYD3_k127_742424_4 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000006231 175.0
YYD3_k127_742424_5 divalent heavy-metal cations transporter - - - 0.00000000000000000000000000000000000000000000002845 179.0
YYD3_k127_742424_6 PFAM molybdopterin binding domain K03742 - 3.5.1.42 0.0000000000000000000000000000000000008167 160.0
YYD3_k127_747873_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009286 464.0
YYD3_k127_747873_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 322.0
YYD3_k127_747873_2 Deoxynucleoside kinase K15518 - 2.7.1.113 0.00000000000000000000000000000000000000000000000000000000000002017 237.0
YYD3_k127_747873_3 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000000003733 138.0
YYD3_k127_747873_4 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000008207 91.0
YYD3_k127_747873_5 PFAM Tetratricopeptide repeat - - - 0.00004159 53.0
YYD3_k127_754076_0 6-phosphogluconolactonase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 352.0
YYD3_k127_754076_1 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000001346 148.0
YYD3_k127_754076_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000000005721 79.0
YYD3_k127_754076_3 Competence-damaged protein K03742,K03743 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.5.1.42 0.0000000000008397 79.0
YYD3_k127_754076_4 PBS lyase HEAT-like repeat - - - 0.0000000448 66.0
YYD3_k127_764225_0 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 294.0
YYD3_k127_764225_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003038 271.0
YYD3_k127_764225_2 synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000799 209.0
YYD3_k127_764225_3 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372,K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000094 193.0
YYD3_k127_764225_4 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000343 189.0
YYD3_k127_764225_5 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000003174 126.0
YYD3_k127_764225_6 TonB C terminal K03832 - - 0.0002763 53.0
YYD3_k127_766080_0 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000007828 135.0
YYD3_k127_766080_1 general secretion pathway protein K02456 - - 0.000000000000000000000000000001152 127.0
YYD3_k127_766080_2 Belongs to the GSP D family K02453 - - 0.000000001545 66.0
YYD3_k127_766080_3 Type II secretory pathway, pseudopilin - - - 0.00000479 55.0
YYD3_k127_783813_0 Dehydrogenase K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007576 420.0
YYD3_k127_783813_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 406.0
YYD3_k127_783813_10 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000003097 90.0
YYD3_k127_783813_11 - - - - 0.000000000125 68.0
YYD3_k127_783813_12 VanZ like family - - - 0.0003508 50.0
YYD3_k127_783813_2 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005332 362.0
YYD3_k127_783813_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000001281 165.0
YYD3_k127_783813_4 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000001651 155.0
YYD3_k127_783813_5 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000006626 167.0
YYD3_k127_783813_6 binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000008473 143.0
YYD3_k127_783813_7 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000392 136.0
YYD3_k127_783813_8 Could be involved in septation K06412 - - 0.000000000000000000000000007401 117.0
YYD3_k127_783813_9 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000003601 99.0
YYD3_k127_808614_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 2.24e-245 779.0
YYD3_k127_808614_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000000000000000000000000000000000000000000002918 251.0
YYD3_k127_808614_2 Thrombospondin type 3 repeat - - - 0.00000000000000000000000000000000000009697 165.0
YYD3_k127_808614_3 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000005008 77.0
YYD3_k127_808614_4 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.000213 55.0
YYD3_k127_812238_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003166 266.0
YYD3_k127_812238_1 intracellular protease K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000000007878 243.0
YYD3_k127_812238_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000001828 228.0
YYD3_k127_812238_3 PFAM metallophosphoesterase K07098 - - 0.0000000000000000000000000000000000762 140.0
YYD3_k127_834411_0 DNA polymerase K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 558.0
YYD3_k127_834411_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 329.0
YYD3_k127_834411_10 Histidine kinase - - - 0.00000000000000000000000000000000001719 157.0
YYD3_k127_834411_11 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000005012 145.0
YYD3_k127_834411_12 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000000000649 94.0
YYD3_k127_834411_13 Aminoglycoside phosphotransferase - - - 0.00000000000000000006546 95.0
YYD3_k127_834411_14 CarboxypepD_reg-like domain K13276 - - 0.000000000000000001904 102.0
YYD3_k127_834411_15 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000005301 89.0
YYD3_k127_834411_16 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000001957 87.0
YYD3_k127_834411_17 Polymer-forming cytoskeletal - - - 0.000000000003806 79.0
YYD3_k127_834411_18 Thiol peroxidase K03564 - 1.11.1.15 0.0000002806 56.0
YYD3_k127_834411_19 6-phosphogluconolactonase activity - - - 0.00001246 59.0
YYD3_k127_834411_2 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 301.0
YYD3_k127_834411_3 Zn_pept K05996 - 3.4.17.18 0.00000000000000000000000000000000000000000000000000000000000000000000000001009 286.0
YYD3_k127_834411_4 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000008639 246.0
YYD3_k127_834411_5 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000003778 199.0
YYD3_k127_834411_6 LytTr DNA-binding domain K02477,K07705,K21696 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.0000000000000000000000000000000000000000000002782 188.0
YYD3_k127_834411_7 O-methyltransferase - - - 0.00000000000000000000000000000000000000000002173 169.0
YYD3_k127_834411_8 PFAM bifunctional deaminase-reductase domain protein K14654 - 1.1.1.302 0.0000000000000000000000000000000000000000002377 173.0
YYD3_k127_834411_9 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000000000000000000000003186 146.0
YYD3_k127_836478_0 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003343 273.0
YYD3_k127_836478_1 Probable molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000003663 163.0
YYD3_k127_844256_0 TIGRFAM VWFA-related Acidobacterial domain - - - 0.00000000000003305 87.0
YYD3_k127_844256_1 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.000000152 61.0
YYD3_k127_844256_2 Tetratricopeptide repeats - - - 0.00000618 58.0
YYD3_k127_866809_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 463.0
YYD3_k127_866809_1 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000576 306.0
YYD3_k127_866809_2 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000004312 217.0
YYD3_k127_866809_3 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.0000000000000003681 93.0
YYD3_k127_866809_4 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00001485 59.0
YYD3_k127_871103_0 Peptidase family M28 - - - 2.596e-295 937.0
YYD3_k127_871103_1 Tfp pilus assembly protein FimV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 389.0
YYD3_k127_871103_2 PFAM Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008521 391.0
YYD3_k127_871103_3 Catalyzes the interconversion of ornithine to glutamate semialdehyde K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000001789 213.0
YYD3_k127_871103_4 Zinc-uptake complex component A periplasmic K09815 - - 0.0000000000001255 72.0
YYD3_k127_871103_6 Spore Coat - - - 0.00006755 56.0
YYD3_k127_884431_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 443.0
YYD3_k127_884431_1 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000001393 108.0
YYD3_k127_884431_3 AAA ATPase domain - - - 0.00000001724 59.0
YYD3_k127_903863_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 8.806e-249 783.0
YYD3_k127_903863_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 453.0
YYD3_k127_903863_10 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000004241 131.0
YYD3_k127_903863_11 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000003022 94.0
YYD3_k127_903863_12 - - - - 0.00000168 61.0
YYD3_k127_903863_13 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000002092 49.0
YYD3_k127_903863_2 TIGRFAM carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000475 436.0
YYD3_k127_903863_3 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007688 419.0
YYD3_k127_903863_4 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005667 401.0
YYD3_k127_903863_5 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 407.0
YYD3_k127_903863_6 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 391.0
YYD3_k127_903863_7 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 381.0
YYD3_k127_903863_8 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001691 289.0
YYD3_k127_903863_9 Large family of predicted nucleotide-binding domains - - - 0.000000000000000000000000000000000000000000000000000004437 215.0
YYD3_k127_904998_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005255 515.0
YYD3_k127_904998_1 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 335.0
YYD3_k127_904998_2 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 298.0
YYD3_k127_904998_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 293.0
YYD3_k127_904998_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000000000000000000000000000000004779 164.0
YYD3_k127_904998_5 tetratricopeptide repeat - - - 0.0000006707 57.0
YYD3_k127_905452_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1364.0
YYD3_k127_905452_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 527.0
YYD3_k127_905452_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 348.0
YYD3_k127_905452_3 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K21310 - 2.1.1.334 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 338.0
YYD3_k127_905452_4 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001862 269.0
YYD3_k127_905452_5 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000001308 237.0
YYD3_k127_905452_6 ECF sigma factor - - - 0.0000000000000000000000000000000000000000003576 164.0
YYD3_k127_905452_7 Domain of unknown function (DUF4395) - - - 0.000000000000000000000000000000000002177 153.0
YYD3_k127_905452_8 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000002193 140.0
YYD3_k127_905452_9 cell redox homeostasis - - - 0.000000000000001011 79.0
YYD3_k127_915935_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1236.0
YYD3_k127_915935_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000005211 248.0
YYD3_k127_915935_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000001811 166.0
YYD3_k127_915935_3 PFAM Maf family protein K06287 - - 0.00000000000000000000000000000000000000003844 161.0
YYD3_k127_915935_4 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000000000000004978 144.0
YYD3_k127_915935_5 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.00000004784 63.0
YYD3_k127_915935_6 SnoaL-like polyketide cyclase K06893 - - 0.000000185 62.0
YYD3_k127_917909_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002779 307.0
YYD3_k127_917909_1 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000007731 255.0
YYD3_k127_917909_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000001425 100.0
YYD3_k127_917909_3 Domain of unknown function (DUF4870) - - - 0.00007977 49.0
YYD3_k127_929683_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000002072 248.0
YYD3_k127_929683_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000002012 211.0
YYD3_k127_929683_2 Rhomboid family - - - 0.00000000000000000000000000000000000002811 157.0
YYD3_k127_929683_3 Transcriptional activator domain - - - 0.00000002854 64.0
YYD3_k127_929683_4 domain protein - - - 0.00008545 51.0
YYD3_k127_9306_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 575.0
YYD3_k127_9306_1 extracellular matrix structural constituent - - - 0.00000000000000000000000000000000003384 147.0
YYD3_k127_946859_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 361.0
YYD3_k127_946859_1 Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000001197 216.0
YYD3_k127_946859_2 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000005637 202.0
YYD3_k127_946859_3 Glycine cleavage H-protein - - - 0.000000000000000000000000000000000000000000007042 179.0
YYD3_k127_946859_4 Tellurite resistance protein TerB - - - 0.00000000000000000000000000000000000000000008304 179.0
YYD3_k127_946859_5 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000008593 171.0
YYD3_k127_946859_6 Alginate export - - - 0.00000000000000000000000000000000001823 149.0
YYD3_k127_946859_7 iron dependent repressor K03709 - - 0.0000000000000000000002236 102.0
YYD3_k127_946859_8 Domain of Unknown Function (DUF350) - - - 0.000001623 52.0
YYD3_k127_989977_0 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 424.0
YYD3_k127_989977_1 exo-alpha-(2->6)-sialidase activity - - - 0.00000000001694 77.0
YYD3_k127_989977_2 Ankyrin repeat - - - 0.00000000007074 66.0