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Overview

ID MAG04649
Name YYD3_bin.20
Sample SMP0126
Taxonomy
Kingdom Archaea
Phylum Thermoproteota
Class Nitrososphaeria
Order Nitrososphaerales
Family Nitrososphaeraceae
Genus TH1177
Species TH1177 sp035706205
Assembly information
Completeness (%) 78.64
Contamination (%) 1.08
GC content (%) 28.0
N50 (bp) 2,726
Genome size (bp) 1,627,248

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1547

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_100085_0 Catalyzes two subsequent steps in gluconeogenesis the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P) K01622 - 3.1.3.11,4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 317.0
YYD3_k127_100085_1 Catalyzes two subsequent steps in gluconeogenesis the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P) K01622 - 3.1.3.11,4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005769 278.0
YYD3_k127_100085_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000007427 240.0
YYD3_k127_100085_3 - - - - 0.00000000002926 64.0
YYD3_k127_1005384_0 small GTP-binding protein K06944 - - 0.00000000000000000000000000000000000000000000002439 171.0
YYD3_k127_1005384_1 - - - - 0.0000000000000000000000000000000000000000005887 160.0
YYD3_k127_1005384_2 Signal peptidase K13280 - 3.4.21.89 0.00000000000000000000000000000000000113 144.0
YYD3_k127_1005384_3 Ribonuclease H K03469 - 3.1.26.4 0.0000000000000000003026 93.0
YYD3_k127_1013669_0 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000001008 88.0
YYD3_k127_1013669_1 Belongs to the peptidase M10A family K08002 - - 0.000005896 56.0
YYD3_k127_1024142_0 - - - - 0.00001002 58.0
YYD3_k127_1040086_0 Vinylacetyl-CoA Delta-isomerase K14534 - 4.2.1.120,5.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 589.0
YYD3_k127_1040086_1 Cob(II)yrinic acid a,c-diamide reductase K04719 - 1.13.11.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 304.0
YYD3_k127_1040086_2 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000005974 244.0
YYD3_k127_1060652_0 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000009381 225.0
YYD3_k127_1060652_1 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000005845 149.0
YYD3_k127_1064493_0 CBS domain K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 460.0
YYD3_k127_1064493_1 Arsenical pump membrane protein - - - 0.00000000000000000000000000000000000000000000000004574 182.0
YYD3_k127_1066005_0 Methyltransferase type 11 K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000001418 267.0
YYD3_k127_1066005_1 Major Intrinsic Protein K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001074 248.0
YYD3_k127_1066005_2 PFAM low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000009877 184.0
YYD3_k127_1066005_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000003982 179.0
YYD3_k127_1066005_4 Belongs to the P(II) protein family K04751 - - 0.000001215 53.0
YYD3_k127_1100621_0 40-residue YVTN family beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 330.0
YYD3_k127_1100621_1 Protein of unknown function (DUF1264) - - - 0.000000000000000003815 92.0
YYD3_k127_1109613_0 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K00313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 486.0
YYD3_k127_1110397_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 305.0
YYD3_k127_1110397_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000001675 249.0
YYD3_k127_1110397_2 - - - - 0.00000000000000000000000000000000000003228 145.0
YYD3_k127_1110397_3 mttA/Hcf106 family K03116 - - 0.000000000165 64.0
YYD3_k127_1112274_2 Glycosyltransferase like family 2 - - - 0.000000000000000006707 94.0
YYD3_k127_1112274_3 methyltransferase - - - 0.00004157 53.0
YYD3_k127_1113778_0 NADP-dependent oxidoreductase K07119 - - 0.0000000000000000000000000000000000000000000000592 171.0
YYD3_k127_1113778_1 phosphorelay sensor kinase activity - - - 0.000006351 53.0
YYD3_k127_1113778_2 - - - - 0.0001525 47.0
YYD3_k127_1114619_0 PFAM TCP-1 cpn60 chaperonin family K22447 - - 7.921e-276 856.0
YYD3_k127_1114619_1 thioesterase - - - 0.000000000000000000000000000000000000000000000000002219 184.0
YYD3_k127_1114619_2 UbiD family decarboxylase K03182 - 4.1.1.98 0.00000000000002684 73.0
YYD3_k127_1116070_0 N-methylhydantoinase A acetone carboxylase, beta subunit - - - 3.471e-262 822.0
YYD3_k127_1116070_1 Ribose-phosphate pyrophosphokinase K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006362 276.0
YYD3_k127_1116070_2 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.000000000000000000000000000000000008365 139.0
YYD3_k127_1122046_0 Belongs to the MCM family K10726 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 310.0
YYD3_k127_1122046_1 - - - - 0.00000000000000005448 80.0
YYD3_k127_1122046_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000172 68.0
YYD3_k127_1128360_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 9.925e-260 822.0
YYD3_k127_1128360_1 Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) K03124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 580.0
YYD3_k127_113268_0 Electron transfer flavoprotein domain K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 504.0
YYD3_k127_113268_1 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K00313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005047 452.0
YYD3_k127_113268_2 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 391.0
YYD3_k127_1132792_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000007387 261.0
YYD3_k127_1132792_1 Located on the platform of the 30S subunit K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000000004044 232.0
YYD3_k127_1135241_0 zinc finger - - - 0.00000000000000000006798 91.0
YYD3_k127_1135241_1 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.1 0.00000000000000009143 80.0
YYD3_k127_1136882_0 HxlR-like helix-turn-helix - - - 0.00000000000000000000000000000000000000003515 156.0
YYD3_k127_1136882_1 - - - - 0.0000000000000000000000002522 120.0
YYD3_k127_1142189_0 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center K02992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 335.0
YYD3_k127_1142189_1 With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003768 265.0
YYD3_k127_1142189_2 Participates in transcription termination K02600 - - 0.00000000000000000000000000000000000000000000000001215 182.0
YYD3_k127_1142189_3 Transposase - - - 0.0006317 43.0
YYD3_k127_1159456_0 PFAM Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 489.0
YYD3_k127_1159456_1 divalent heavy-metal cations transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009218 451.0
YYD3_k127_1159456_2 iron dependent repressor - - - 0.00000000000000000000000000000000000000000000000000000002379 200.0
YYD3_k127_1159456_3 Methyltransferase domain - - - 0.000001289 51.0
YYD3_k127_1178611_0 Dual specificity phosphatase, catalytic domain K14165 - 3.1.3.16,3.1.3.48 0.0000000000000000000000000000000000000000000003593 172.0
YYD3_k127_1178611_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000006662 130.0
YYD3_k127_1178611_2 Diacylglycerol kinase catalytic domain - - - 0.00000000000000000000000000000004488 138.0
YYD3_k127_1182282_0 hydrolases or acyltransferases (alpha beta hydrolase superfamily) K01055 - 3.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000001065 239.0
YYD3_k127_1183658_0 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 313.0
YYD3_k127_1183658_1 - - - - 0.0000000000000000000006605 99.0
YYD3_k127_1188785_0 Belongs to the TPP enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 329.0
YYD3_k127_1188785_1 Thiamine pyrophosphate enzyme, central domain K04103 - 4.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001626 276.0
YYD3_k127_1189880_0 Pregnancy-associated plasma protein-A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007506 374.0
YYD3_k127_1189880_1 - - - - 0.0000000000000000000000000008334 116.0
YYD3_k127_1191987_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03041 - 2.7.7.6 1.227e-287 890.0
YYD3_k127_1191987_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03041 - 2.7.7.6 0.0000000000000000000000000000000000000002503 150.0
YYD3_k127_1192096_0 cytochrome p450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 397.0
YYD3_k127_1192096_1 oxidation-reduction process K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000007405 166.0
YYD3_k127_1192096_2 protein conserved in bacteria - - - 0.00000000000001885 83.0
YYD3_k127_1198222_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 414.0
YYD3_k127_1198222_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000006388 80.0
YYD3_k127_1200139_0 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000001403 227.0
YYD3_k127_1200139_1 Transcriptional regulator - - - 0.0000000000004171 72.0
YYD3_k127_1200139_2 Alpha/beta hydrolase family - - - 0.0002281 47.0
YYD3_k127_121599_0 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 398.0
YYD3_k127_121599_1 Glutamine amidotransferase of anthranilate synthase K01658 - 4.1.3.27 0.000000000000005276 80.0
YYD3_k127_121599_2 Glyoxalase-like domain K06996 - - 0.0000000000315 68.0
YYD3_k127_122055_0 epimerase K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 341.0
YYD3_k127_122055_1 - - - - 0.00000000000000002618 90.0
YYD3_k127_1220969_0 including yeast histone deacetylase and acetoin utilization protein K04768 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 398.0
YYD3_k127_1221248_0 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000005332 226.0
YYD3_k127_1221248_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000006208 129.0
YYD3_k127_1224509_0 cheY-homologous receiver domain - - - 0.00000000000241 72.0
YYD3_k127_1231261_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000003212 224.0
YYD3_k127_1231261_1 resistance protein K14166 - - 0.000000000000000000000000000000000000000000000000000005571 201.0
YYD3_k127_1231560_0 Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA K03265 - - 2.317e-217 680.0
YYD3_k127_1231560_1 Radical SAM - - - 0.000000000000000001245 86.0
YYD3_k127_1234088_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008004 333.0
YYD3_k127_1234088_1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins K20989 - - 0.00000000000000000000002306 105.0
YYD3_k127_1234088_2 GYD domain - - - 0.00000000000000001193 85.0
YYD3_k127_1235976_0 MFS_1 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 473.0
YYD3_k127_1239545_0 Peptidase family M1 domain K01256,K13722 - 3.4.11.2 0.00000006674 57.0
YYD3_k127_1239545_1 - - - - 0.0000002071 58.0
YYD3_k127_1263342_0 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008219 313.0
YYD3_k127_1263342_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000001318 235.0
YYD3_k127_1263342_2 adenylosuccinate lyase K01756 - 4.3.2.2 0.00000000000000000000000000002343 121.0
YYD3_k127_1264614_0 - - - - 0.000000000000000000000000000005462 127.0
YYD3_k127_1264614_1 phosphohistidine phosphatase, SixA K08296 - - 0.000000000000000000000005796 107.0
YYD3_k127_1264759_0 DEAD-like helicases superfamily - - - 0.000000000000000000002022 109.0
YYD3_k127_1273810_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002681 285.0
YYD3_k127_1273810_1 Nickel-dependent hydrogenase - - - 0.0000000000000000000000000000000001233 138.0
YYD3_k127_1275153_0 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02323 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 427.0
YYD3_k127_1275153_1 - - - - 0.000000000000000000000000000000000000000000004172 168.0
YYD3_k127_1301726_0 NHL repeat - - - 0.00000001568 56.0
YYD3_k127_1301726_1 NHL repeat - - - 0.000004003 50.0
YYD3_k127_1301726_2 NHL repeat - GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503 - 0.0008282 42.0
YYD3_k127_138926_0 ABC-type transport system, periplasmic component surface lipoprotein K02058,K07335 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 335.0
YYD3_k127_1405536_0 PFAM Glycosyl transferase family 2 K07011,K11936 - - 0.00000000000000000000000000000000000000000000000000000000001221 224.0
YYD3_k127_1405536_1 Pyruvate phosphate dikinase K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000006475 213.0
YYD3_k127_1408209_0 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000006586 185.0
YYD3_k127_1416405_0 Thiamine biosynthesis protein ThiC K03147 - 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 424.0
YYD3_k127_1416405_1 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000002286 187.0
YYD3_k127_1420350_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 334.0
YYD3_k127_1445908_0 PAC2 family K06869 - - 0.00000000000000000000000000000000000000000000000000009962 196.0
YYD3_k127_1445908_1 - - - - 0.0000000000000000000000000003239 115.0
YYD3_k127_1456501_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006807 292.0
YYD3_k127_1456501_1 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002901 241.0
YYD3_k127_1456501_2 COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000002083 216.0
YYD3_k127_1456501_3 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.0000000000000000000000000000000000000000000000001292 180.0
YYD3_k127_1456501_4 Putative antitoxin - - - 0.00003375 50.0
YYD3_k127_1462036_0 Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) K03124 - - 0.0000000000000000000000000000000000000000000000000000000000000003172 232.0
YYD3_k127_1465800_0 Cytochrome b subunit of the bc complex K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008445 576.0
YYD3_k127_1465800_1 PFAM Copper binding proteins, plastocyanin azurin family - - - 0.0000001658 55.0
YYD3_k127_1503721_0 DNA polymerase K02319 - 2.7.7.7 0.0 1054.0
YYD3_k127_1503721_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001363 277.0
YYD3_k127_1503721_2 amino acid - - - 0.000000000000000000000000000000000000004833 154.0
YYD3_k127_1520583_0 - - - - 0.0000000000000000000000000000000000000000000000000000000006127 206.0
YYD3_k127_1520583_1 - - - - 0.0000000000000000000000000000000000000000000008835 171.0
YYD3_k127_1531693_0 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000005681 218.0
YYD3_k127_1531693_1 TIGRFAM tungstate ABC transporter binding protein WtpA K15495 - - 0.00000000000000000000000000000000061 138.0
YYD3_k127_1531693_2 membrane transporter protein K07090 - - 0.0000000000000000003604 94.0
YYD3_k127_15820_0 COG1252 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000006125 249.0
YYD3_k127_1587764_0 DNA primase K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005643 550.0
YYD3_k127_1587764_1 Domain of unknown function DUF120 K07732 - 2.7.1.161 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001527 277.0
YYD3_k127_1587764_2 Cytidylyltransferase-like K00980,K14656 - 2.7.7.2,2.7.7.39 0.00000000000000000000000000000000000000000000000000000000000000000101 231.0
YYD3_k127_1605343_0 Probable cobalt transporter subunit (CbtA) - - - 0.00000000000000000000000000000000000000000000000000000000000000005058 230.0
YYD3_k127_1605343_1 Probable cobalt transporter subunit (CbtB) - - - 0.00000000000000000003071 91.0
YYD3_k127_1605343_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000005109 89.0
YYD3_k127_161173_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006143 488.0
YYD3_k127_161173_1 Peptidase dimerisation domain - - - 0.00000001368 58.0
YYD3_k127_1633960_0 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008155 305.0
YYD3_k127_1633960_1 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000102 206.0
YYD3_k127_1633960_2 Belongs to the UPF0201 family K09736 - - 0.00000000000000000000000000003312 121.0
YYD3_k127_1633960_3 Cupin domain - - - 0.000000000000001979 81.0
YYD3_k127_163729_0 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02259 - - 0.000000000000000000000000001352 117.0
YYD3_k127_163729_1 Haem utilisation ChuX/HutX - - - 0.00000000000005444 78.0
YYD3_k127_163787_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007216 368.0
YYD3_k127_163787_1 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains - - - 0.00000000000000000000000000000000000000000003139 166.0
YYD3_k127_163787_2 Peptidyl-tRNA hydrolase PTH2 K04794 - 3.1.1.29 0.000000000000000000000000000000000000003097 149.0
YYD3_k127_163787_3 - - - - 0.0000000000000000000000001364 109.0
YYD3_k127_164013_0 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001263 265.0
YYD3_k127_164013_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000001031 155.0
YYD3_k127_164013_2 Transcriptional regulator - - - 0.00000000000000000000000000017 118.0
YYD3_k127_1648487_0 Sodium hydrogen exchanger K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 439.0
YYD3_k127_1682791_0 Deoxyhypusine synthase K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 506.0
YYD3_k127_1682791_1 Domain of unknown function (DUF309) K09763 - - 0.00000000000000000000000000000000000000003334 158.0
YYD3_k127_1692051_0 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000003644 214.0
YYD3_k127_1692051_1 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000009141 79.0
YYD3_k127_1694592_0 Formyl transferase K01433 - 3.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001575 275.0
YYD3_k127_1694592_1 Belongs to the phosphohexose mutase family K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000008347 188.0
YYD3_k127_171553_0 AAA domain (Cdc48 subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008396 602.0
YYD3_k127_171553_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000001293 243.0
YYD3_k127_171553_2 Type III restriction enzyme, res subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000008674 238.0
YYD3_k127_171553_3 COG1599 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins K07466 - - 0.0000000000000000000000000000006667 124.0
YYD3_k127_1716020_0 tRNA methyltransferase complex GCD14 subunit K07442 - 2.1.1.219,2.1.1.220 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 364.0
YYD3_k127_1716020_1 PHP-associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 331.0
YYD3_k127_1716020_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000000000000000000000007517 114.0
YYD3_k127_1716020_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000101 54.0
YYD3_k127_1717169_0 inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 545.0
YYD3_k127_1717169_1 inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007613 402.0
YYD3_k127_1717169_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000001219 139.0
YYD3_k127_1732105_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 1.241e-238 746.0
YYD3_k127_1740698_0 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 461.0
YYD3_k127_1740698_1 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001158 253.0
YYD3_k127_1740698_2 - - - - 0.00000000000000000008562 90.0
YYD3_k127_17777_0 helix_turn_helix ASNC type K03718 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000264 249.0
YYD3_k127_17777_1 - - - - 0.0000000000000000000000000000000000000000000000000128 184.0
YYD3_k127_17777_2 - - - - 0.0000000000000000000000000000000000003887 143.0
YYD3_k127_1796335_0 Binds to the 23S rRNA K02929 - - 0.000000000000000000000000000000000000000000001503 166.0
YYD3_k127_1796335_1 MobA-like NTP transferase domain K19712 - 2.7.7.62 0.00000000000000000000000000000009795 132.0
YYD3_k127_1796335_2 ribosomal protein K02978 - - 0.00000000000000003081 82.0
YYD3_k127_1796335_3 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0003345 45.0
YYD3_k127_1797400_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000007837 199.0
YYD3_k127_1811326_0 Ribosomal protein L4 K02930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 314.0
YYD3_k127_1811326_1 ribosomal protein L3 K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 293.0
YYD3_k127_181168_0 Winged helix-turn-helix DNA-binding - - - 0.000000000000000000000000000000008646 134.0
YYD3_k127_181168_2 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000007349 106.0
YYD3_k127_181168_3 - - - - 0.00000000000000002399 87.0
YYD3_k127_1815095_0 SUF system FeS assembly protein K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000001934 228.0
YYD3_k127_1815095_1 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000000000000000000000000000000000000000000003198 180.0
YYD3_k127_1815095_2 - - - - 0.0000000000004377 74.0
YYD3_k127_1829812_0 - - - - 0.000000000000000000000000000000000000000002127 164.0
YYD3_k127_1839549_0 PFAM TatD-related deoxyribonuclease K07051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002285 273.0
YYD3_k127_1839549_1 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.0000000000002245 74.0
YYD3_k127_1839549_2 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.0007563 44.0
YYD3_k127_1844927_0 TIGRFAM methyltransferase FkbM family - - - 0.00000001249 59.0
YYD3_k127_1847763_0 Peptidase family M3 K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 370.0
YYD3_k127_1847763_1 Deoxyhypusine synthase K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000001244 198.0
YYD3_k127_1848852_0 aldo-keto reductase (NADP) activity - - - 0.0000000000000000000000000000000000000000000000000000000000000002465 224.0
YYD3_k127_1848852_1 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091,K01838,K07025 - 3.1.3.18,5.4.2.6 0.0000000000000000000001007 101.0
YYD3_k127_1848852_2 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091,K01838,K07025 - 3.1.3.18,5.4.2.6 0.000005947 51.0
YYD3_k127_1848852_3 OsmC-like protein - - - 0.00004571 52.0
YYD3_k127_186344_0 choline dehydrogenase activity K03333 - 1.1.3.6 0.00000000000000000000000007648 121.0
YYD3_k127_186344_1 tetratricopeptide repeat - - - 0.00000000000001212 78.0
YYD3_k127_186344_2 Caspase domain - - - 0.0001674 47.0
YYD3_k127_1868828_0 PFAM SPFH domain Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 405.0
YYD3_k127_1868828_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000004046 78.0
YYD3_k127_1868828_2 B12 binding domain K01849 - 5.4.99.2 0.000000000549 60.0
YYD3_k127_1879168_0 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 327.0
YYD3_k127_1879168_1 Orotidine 5'-phosphate decarboxylase / HUMPS family K01591 - 4.1.1.23 0.0000000000000000000000000000000000004276 149.0
YYD3_k127_1884953_0 Tyrosine--tRNA ligase K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 492.0
YYD3_k127_1884953_1 Tetrapyrrole (Corrin/Porphyrin) Methylases K05934 - 2.1.1.131 0.000000000000000000000000000000000000000000000000000000000000000000000001206 246.0
YYD3_k127_1885012_0 Ribosome biogenesis protein, C-terminal K09140 - - 0.000000000000000000000000000000000000000000000001257 179.0
YYD3_k127_1885012_1 Belongs to the UPF0201 family K09736 - - 0.000000000000000000000000004096 115.0
YYD3_k127_1885012_2 3-hydroxyacyl-CoA dehydrogenase K15016 - 1.1.1.35,4.2.1.17 0.000000000000000001164 87.0
YYD3_k127_1885012_3 AAA domain - - - 0.000000000005436 67.0
YYD3_k127_1890534_0 S-adenosylmethionine synthetase K00789 - 2.5.1.6 1.113e-196 618.0
YYD3_k127_1890534_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 615.0
YYD3_k127_1890534_2 TIGRFAM 2-methylcitrate synthase citrate synthase II K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 588.0
YYD3_k127_1890534_3 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009082 364.0
YYD3_k127_1890534_4 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03433 - 3.4.25.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004348 286.0
YYD3_k127_1890534_5 PUA domain K07575 - - 0.000000000000000000000000000000000001629 143.0
YYD3_k127_1890534_6 RecA RadA K04482,K04483 - - 0.000000000000000000000000000000000002345 147.0
YYD3_k127_1890534_7 snRNP Sm proteins K04796 - - 0.0000000000000000000000000000001091 127.0
YYD3_k127_1890534_8 Binds directly to 23S rRNA. Probably involved in E site tRNA release K02863 - - 0.00000000000000006739 81.0
YYD3_k127_1900776_0 Mg2 transporter protein K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005019 370.0
YYD3_k127_1900776_1 Protein of unknown function (DUF790) K09744 - - 0.00000000000000000000001307 106.0
YYD3_k127_1935657_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000007134 219.0
YYD3_k127_1973881_0 Belongs to the RtcB family K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007075 527.0
YYD3_k127_1983599_0 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 540.0
YYD3_k127_2002198_0 HEAT repeats K06072 - 1.14.99.29 0.0000000000000000000000000000000000000000000000001264 183.0
YYD3_k127_2002198_1 response regulator, receiver - - - 0.000007015 53.0
YYD3_k127_2011882_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 2.476e-244 762.0
YYD3_k127_2015110_0 - - - - 0.00000000000000000000000002834 112.0
YYD3_k127_2019176_0 ATP-binding region, ATPase domain protein K02482,K14986 - 2.7.13.3 0.00000000002995 70.0
YYD3_k127_2020837_1 - - - - 0.00000000000000000000000000002065 120.0
YYD3_k127_2020837_2 Belongs to the peptidase M10A family K08002 - - 0.00001326 55.0
YYD3_k127_2035662_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03041 - 2.7.7.6 0.0 1056.0
YYD3_k127_2035662_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K13798 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 335.0
YYD3_k127_2046371_0 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 302.0
YYD3_k127_205018_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07709 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008906 406.0
YYD3_k127_205018_1 PIN domain of ribonuclease K07060 - - 0.000000000000000003324 87.0
YYD3_k127_2053683_0 von Willebrand factor (vWF) type A domain - - - 1.881e-221 697.0
YYD3_k127_2053683_1 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 437.0
YYD3_k127_2053683_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 335.0
YYD3_k127_2053683_3 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000012 150.0
YYD3_k127_2067255_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 376.0
YYD3_k127_2067255_1 D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo K09716 - 3.1.1.96 0.00000000000000000000000000000000000000000000000000000000000000004434 231.0
YYD3_k127_2067255_2 Binds to the 23S rRNA K02885 - - 0.00000000000000000000000000000000000000000000000000000000002184 208.0
YYD3_k127_2067255_3 ribosomal protein K02912 - - 0.00000000000000000000000000000000000000000000000000003358 190.0
YYD3_k127_2069432_0 Glycosyltransferase Family 4 - - - 0.000000000000000007766 96.0
YYD3_k127_2070625_0 COG2303 Choline dehydrogenase and related flavoproteins - - - 0.000000000000000000000000000000000000000000000000000000005147 218.0
YYD3_k127_2082626_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 2.411e-279 867.0
YYD3_k127_2082626_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 543.0
YYD3_k127_2082626_2 Methyltransferase type 11 K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008665 332.0
YYD3_k127_2082626_3 DHHA1 domain K07463 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 301.0
YYD3_k127_2082626_4 ribosomal protein K02956 - - 0.000000000000000000000000000000000000000000000000000000000000007544 219.0
YYD3_k127_2082626_5 NADH ubiquinone oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000007909 216.0
YYD3_k127_2082626_6 HIT domain K02503 - - 0.0000000000000000000000000000000000000000000000813 172.0
YYD3_k127_2082626_7 - - - - 0.0000000000000000000000000000000000001786 141.0
YYD3_k127_2082626_9 - - - - 0.00001996 51.0
YYD3_k127_2099229_0 Enoyl-(Acyl carrier protein) reductase - - - 7.878e-215 679.0
YYD3_k127_2099229_1 Cytochrome oxidase assembly protein K02259 - - 0.00000000000000000000000000000000000000000000000000005236 191.0
YYD3_k127_2099229_2 - - - - 0.00000000000000000002464 98.0
YYD3_k127_2151892_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family - GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000009859 248.0
YYD3_k127_2151892_1 Protein involved in ribosomal biogenesis, contains PUA domain K07565 - - 0.000000000000000000000000000000002232 135.0
YYD3_k127_2151892_3 Required for chromosome condensation and partitioning - - - 0.00000000000001042 80.0
YYD3_k127_2198791_0 haloacid dehalogenase-like hydrolase K07026 - 3.1.3.70 0.0000000000000000000000000000000000000000000001434 178.0
YYD3_k127_2198791_1 membrane-associated protein domain - - - 0.000000000000000000000000000000002139 138.0
YYD3_k127_2199217_0 Amino acid permease - - - 4.57e-215 687.0
YYD3_k127_2199217_1 Amino acid permease - - - 0.00000000000004296 71.0
YYD3_k127_2202413_0 R3H domain K19036 - 3.6.4.12,3.6.4.13 0.0000000000000000000000000000005537 138.0
YYD3_k127_2202874_0 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000001203 198.0
YYD3_k127_2202874_1 - - - - 0.00000000000000009385 89.0
YYD3_k127_227203_0 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 310.0
YYD3_k127_227203_1 - - - - 0.00000000000000000000000000000000000000004617 164.0
YYD3_k127_227203_2 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000002294 125.0
YYD3_k127_2278881_0 - - - - 0.00000000000000000000000000000000000000000000000000001782 192.0
YYD3_k127_2278881_2 zinc-ribbon domain - - - 0.000000000000000000000000000000000004245 139.0
YYD3_k127_2278881_3 Queuosine biosynthesis protein QueC K06920 - 6.3.4.20 0.000000000000000008595 85.0
YYD3_k127_2297154_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000232 182.0
YYD3_k127_231783_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000281 252.0
YYD3_k127_231783_1 - - - - 0.00000000002995 70.0
YYD3_k127_2319608_0 diphthine synthase K20215 - 2.1.1.98 0.0000000000000000000000000000000000000000000000000000001895 199.0
YYD3_k127_2319608_1 PFAM GvpD gas vesicle - - - 0.00000000000000001059 94.0
YYD3_k127_2321019_0 PFAM TCP-1 cpn60 chaperonin family K22447 - - 3.689e-235 736.0
YYD3_k127_2321019_1 UreE urease accessory protein, N-terminal domain K03187 - - 0.00000000000000000000000000000000000000006927 157.0
YYD3_k127_2321019_3 UreF K03188 - - 0.00000000000000002037 86.0
YYD3_k127_2321697_0 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 521.0
YYD3_k127_2321697_1 Belongs to the PdaD family K02626 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 313.0
YYD3_k127_2337995_0 - - - - 0.000000000000000000000000000000002761 136.0
YYD3_k127_2338980_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1174.0
YYD3_k127_2338980_1 -transport system K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 300.0
YYD3_k127_2338980_2 Binding-protein-dependent transport system inner membrane component K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 291.0
YYD3_k127_2338980_3 COG1653 ABC-type sugar transport system, periplasmic component K02027 - - 0.000000000000000000000007115 102.0
YYD3_k127_2345030_0 LOR SDH bifunctional - - - 4.425e-195 615.0
YYD3_k127_2345030_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 612.0
YYD3_k127_2345030_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 595.0
YYD3_k127_2345030_3 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K09759 - 6.1.1.23 0.0000000000000000000000000000000000000000000000000000000000006117 212.0
YYD3_k127_2345030_4 - - - - 0.00000000000000000000000000000000000000001581 156.0
YYD3_k127_2345030_5 HD domain K07023 - - 0.000000000000000000000000000000000000001623 153.0
YYD3_k127_2345030_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000008247 51.0
YYD3_k127_2350052_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665,K06883 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043021,GO:0043022,GO:0044424,GO:0044464,GO:0044877 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 398.0
YYD3_k127_2350052_1 integral membrane protein - - - 0.0000000000000000000003354 104.0
YYD3_k127_2358125_0 Cysteine synthase K12339 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 528.0
YYD3_k127_2358125_1 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 307.0
YYD3_k127_2358125_2 F420-0:Gamma-glutamyl ligase K12234 - 6.3.2.31,6.3.2.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000008457 261.0
YYD3_k127_2358125_3 redox protein, regulator of disulfide bond formation - - - 0.000000000000000000000000000004441 120.0
YYD3_k127_2358125_4 PFAM Glycosyl transferase family 2 K07011,K11936 - - 0.0000000000000000000363 93.0
YYD3_k127_2358125_5 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000008515 88.0
YYD3_k127_2384911_0 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000006066 198.0
YYD3_k127_2396741_0 RNA-metabolising metallo-beta-lactamase K07041 - - 1.163e-263 819.0
YYD3_k127_2396741_1 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000434 109.0
YYD3_k127_2396741_3 Belongs to the UPF0147 family K09721 - - 0.000000000000199 74.0
YYD3_k127_2397286_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008886 383.0
YYD3_k127_2397286_1 Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to translocate with the RNA polymerase following initiation and acts by binding to the non template strand of the transcription bubble in elongation complexes K03136 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002423 270.0
YYD3_k127_2397286_2 DEAD DEAH box helicase K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000001802 250.0
YYD3_k127_2397286_3 RibD C-terminal domain K14654 - 1.1.1.302 0.0000000000000000000000000000000000000000000000000000000000001502 218.0
YYD3_k127_2397286_4 Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity K08096 - 3.5.4.29 0.0000000000000002821 80.0
YYD3_k127_2399781_0 COG1522 Transcriptional regulators - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 493.0
YYD3_k127_2399781_1 Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'- 5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails K11600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008725 409.0
YYD3_k127_2399781_10 Ribosomal L37ae protein family K02921 - - 0.0000000000000000000000000000000189 126.0
YYD3_k127_2399781_12 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000007347 71.0
YYD3_k127_2399781_2 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site K12589 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004959 381.0
YYD3_k127_2399781_3 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome K03679 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 356.0
YYD3_k127_2399781_4 Shwachman-Bodian-Diamond syndrome (SBDS) protein K14574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 317.0
YYD3_k127_2399781_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001364 250.0
YYD3_k127_2399781_6 Pyridoxamine 5'-phosphate K07005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009871 245.0
YYD3_k127_2399781_7 Transcription elongation factor Spt5 K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000001476 239.0
YYD3_k127_2399781_8 ERCC4 domain K10848 - - 0.00000000000000000000000000000000000000000000000000000000000000000005026 239.0
YYD3_k127_2399781_9 Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding K04798 - - 0.000000000000000000000000000000000000004668 149.0
YYD3_k127_2404008_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 565.0
YYD3_k127_2404008_1 Tetrapyrrole (Corrin/Porphyrin) Methylases K05934 - 2.1.1.131 0.000000000000000000000000000000000000000000000000000000004681 200.0
YYD3_k127_2405738_1 - - - - 0.000001514 58.0
YYD3_k127_2405998_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009257 331.0
YYD3_k127_2405998_1 Glycogen debranching enzyme K01194 - 3.2.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009079 279.0
YYD3_k127_2405998_2 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000008669 126.0
YYD3_k127_2418529_0 Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 7.151e-227 708.0
YYD3_k127_2422792_0 GTP-binding protein TypA K06207 - - 1.119e-277 854.0
YYD3_k127_2422792_1 Histidine kinase - - - 1.263e-200 630.0
YYD3_k127_2423482_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 8.983e-203 636.0
YYD3_k127_2423482_1 ThiF family K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 425.0
YYD3_k127_2423482_2 ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA K06932 - 6.3.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 308.0
YYD3_k127_2423482_3 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000002561 180.0
YYD3_k127_242959_0 GTPase of unknown function C-terminal K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007403 538.0
YYD3_k127_242959_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37 K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 442.0
YYD3_k127_242959_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000009411 240.0
YYD3_k127_242959_3 Mn2 -dependent serine threonine protein kinase K08851 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000001652 209.0
YYD3_k127_242959_4 Belongs to the HAM1 NTPase family K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000001578 174.0
YYD3_k127_242959_5 - - - - 0.0000000000000000000000000000007981 124.0
YYD3_k127_242959_6 Transcriptional regulator - - - 0.000001756 53.0
YYD3_k127_242959_7 - - - - 0.00003666 47.0
YYD3_k127_2442856_0 Ribosomal protein L15E K02877 - - 0.00000000000000000000000000000000000000000000000000000000000000000008792 233.0
YYD3_k127_2442856_1 methanogenesis marker protein 1 K09136 - - 0.000000000000000000000000000000000000000000000000000000000000000001425 229.0
YYD3_k127_2442856_2 PFAM TfuA domain protein, core - - - 0.0000000000000000000000000000000000000000000000000000000000000001036 228.0
YYD3_k127_2442856_3 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.000000000000000000000000000000000000000006766 160.0
YYD3_k127_2442856_4 - - - - 0.00000000000000000000000001879 113.0
YYD3_k127_246581_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 3.327e-246 767.0
YYD3_k127_246581_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K03231 - - 3.869e-239 743.0
YYD3_k127_246581_2 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000001262 105.0
YYD3_k127_246581_3 protein conserved in archaea K09723 - - 0.0001282 46.0
YYD3_k127_248442_0 synthetase (class II) K01880 - 6.1.1.14 1.992e-215 678.0
YYD3_k127_248442_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008304 451.0
YYD3_k127_248442_2 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 307.0
YYD3_k127_248442_4 UDP binding domain K02472 - 1.1.1.336 0.00001262 49.0
YYD3_k127_249026_0 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003896 359.0
YYD3_k127_2519256_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000002379 200.0
YYD3_k127_2519256_1 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091,K01838,K07025 - 3.1.3.18,5.4.2.6 0.000000000000000000000000000000000000000000000000001406 190.0
YYD3_k127_2519256_2 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000008103 124.0
YYD3_k127_2519256_3 - - - - 0.0000005857 58.0
YYD3_k127_2520955_0 response regulator, receiver - - - 0.000000002892 63.0
YYD3_k127_2525991_0 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004916 341.0
YYD3_k127_2525991_1 PFAM Creatininase K01470 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000001898 217.0
YYD3_k127_2525991_2 PFAM Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000003372 190.0
YYD3_k127_2525991_3 Protein tyrosine kinase - - - 0.00000000000000004172 88.0
YYD3_k127_2527830_0 - - - - 0.00000000009358 66.0
YYD3_k127_2559981_0 phenylalanyl-tRNA synthetase, beta subunit K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007783 451.0
YYD3_k127_2559981_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002774 329.0
YYD3_k127_2597064_0 COG1960 Acyl-CoA dehydrogenases K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 514.0
YYD3_k127_2597064_1 Thiamine biosynthesis protein ThiC K03147 - 4.1.99.17 0.0000000000000000000005607 96.0
YYD3_k127_2601083_0 Isocitrate isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007758 483.0
YYD3_k127_2601083_1 Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000001193 208.0
YYD3_k127_2619881_0 PFAM tRNA synthetases class I (C) catalytic domain K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001025 261.0
YYD3_k127_2619881_1 SMC proteins Flexible Hinge Domain K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000386 223.0
YYD3_k127_2619881_2 Acetyltransferase (GNAT) family - - - 0.000000000004713 76.0
YYD3_k127_2619997_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 6.265e-243 759.0
YYD3_k127_2619997_1 antibiotic catabolic process K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005712 276.0
YYD3_k127_2619997_3 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000745 192.0
YYD3_k127_2619997_4 - - - - 0.000000000000000000000000000000000000000000003062 171.0
YYD3_k127_2619997_5 Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6- hydroxymethyl-7,8-dihydropterin diphosphate (6-HMDP) K07142 - 2.7.6.3 0.000000000000000000000000000000000000000007344 156.0
YYD3_k127_2619997_6 zinc finger - - - 0.0000000001539 62.0
YYD3_k127_2625843_0 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000009613 151.0
YYD3_k127_2625843_1 of nitrite reductase and ring-hydroxylating K05710 - - 0.00000000000000000000006336 105.0
YYD3_k127_262881_0 Queuosine biosynthesis protein QueC K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 290.0
YYD3_k127_262881_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000001967 226.0
YYD3_k127_262881_2 Replication factor C K04801 - - 0.00000000000000000000000000000002458 128.0
YYD3_k127_2649032_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009191 361.0
YYD3_k127_2656119_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 2.243e-306 950.0
YYD3_k127_2656119_1 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000000000001766 169.0
YYD3_k127_2656119_2 - - - - 0.000000000001982 75.0
YYD3_k127_2660627_0 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity K03547,K05970 - 3.1.1.53 0.00000000001505 69.0
YYD3_k127_2660627_1 Part of the Rad50 Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single- stranded endonuclease activity K03547 - - 0.0000008848 60.0
YYD3_k127_2660627_2 PFAM SMC domain protein K03546 - - 0.00003853 57.0
YYD3_k127_2664135_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 1.375e-224 707.0
YYD3_k127_2664135_1 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into K04799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532 368.0
YYD3_k127_2664135_2 NADH ubiquinone oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000002739 211.0
YYD3_k127_2664135_3 Transcriptional regulator - - - 0.000000000000000006347 86.0
YYD3_k127_2670304_0 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000001077 168.0
YYD3_k127_2670304_1 - - - - 0.0000000000000000000000000000000002695 134.0
YYD3_k127_2670304_2 Transcriptional regulator - - - 0.00000000000000000001342 93.0
YYD3_k127_2670304_3 Matrix metallopeptidase 19 K07763,K07998 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005575,GO:0005576,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0009987,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022411,GO:0022617,GO:0030198,GO:0031012,GO:0043062,GO:0043170,GO:0044238,GO:0044421,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564 3.4.24.80 0.0000008507 59.0
YYD3_k127_2670304_4 ligase activity K00666,K03892 - - 0.0000639 48.0
YYD3_k127_2676847_0 PFAM 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 321.0
YYD3_k127_2676847_2 Ammonium Transporter K03320 - - 0.000000002177 59.0
YYD3_k127_2680470_0 Ribonuclease K03469 - 3.1.26.4 0.0000000000000000000000000000000001427 138.0
YYD3_k127_2680470_1 Mediates influx of magnesium ions K03284 - - 0.0000000000000000003491 99.0
YYD3_k127_2681611_0 poly(R)-hydroxyalkanoic acid synthase K03821 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009058,GO:0016234,GO:0042618,GO:0042619,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0070088,GO:0071704,GO:1901440,GO:1901441,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000006531 254.0
YYD3_k127_2681933_0 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 400.0
YYD3_k127_2681933_1 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000002405 226.0
YYD3_k127_2690982_0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 436.0
YYD3_k127_2690982_1 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases K00363,K15762 - 1.7.1.15 0.0000000000000000000000000000000000000000003411 159.0
YYD3_k127_2699268_0 TIGRFAM excinuclease ABC, C subunit K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001006 273.0
YYD3_k127_2699268_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000002198 267.0
YYD3_k127_2702532_0 PFAM TPR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000501 264.0
YYD3_k127_2702532_1 - - - - 0.00000000000000000000000000000000000000000003084 163.0
YYD3_k127_2706907_0 FeS assembly ATPase SufC K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 418.0
YYD3_k127_2706907_1 DNA-directed RNA polymerase, alpha subunit 40 kD subunit K03047 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003704 316.0
YYD3_k127_2706907_2 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000000003669 222.0
YYD3_k127_2706907_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000004542 159.0
YYD3_k127_2706907_4 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000001184 106.0
YYD3_k127_2706907_5 Belongs to the eukaryotic ribosomal protein eL18 family K02883 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000001788 89.0
YYD3_k127_2706907_6 - - - - 0.00000001143 59.0
YYD3_k127_2709961_0 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000004432 198.0
YYD3_k127_2709961_1 Purple acid Phosphatase, N-terminal domain - - - 0.000000000000000000000000001726 125.0
YYD3_k127_2709961_2 flavodoxin nitric oxide synthase - - - 0.00000000003666 63.0
YYD3_k127_2709961_3 small metal-binding protein - - - 0.000000001415 61.0
YYD3_k127_2709961_4 Acetyltransferase (GNAT) domain - - - 0.00000221 49.0
YYD3_k127_2713155_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 342.0
YYD3_k127_2713155_1 - - - - 0.00000000000000003702 84.0
YYD3_k127_2722009_0 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000001548 222.0
YYD3_k127_2722009_1 Cobalamin B12-binding domain protein K16955,K22491 - - 0.000000000000000000000000005366 116.0
YYD3_k127_2722009_2 - - - - 0.000000000009702 70.0
YYD3_k127_2737584_0 Transcriptional regulator - - - 0.0000000000000000000000000000000000004065 143.0
YYD3_k127_2737584_1 Copper binding proteins, plastocyanin/azurin family - - - 0.00000000000000000000001632 109.0
YYD3_k127_2737584_2 Antibiotic biosynthesis monooxygenase K09932 - - 0.00002208 49.0
YYD3_k127_2738606_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 345.0
YYD3_k127_2738606_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000003034 252.0
YYD3_k127_2744244_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 2.9e-217 680.0
YYD3_k127_2744244_1 Succinyl-CoA ligase like flavodoxin domain K18594 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006222 370.0
YYD3_k127_2744244_2 Iron-sulfur cluster assembly accessory protein K13628 - - 0.000000000000000000000000000000000000000000000000000000002688 200.0
YYD3_k127_2744244_3 mttA/Hcf106 family K03116 - - 0.0000000000000000357 86.0
YYD3_k127_2745551_0 COG1914 Mn2 and Fe2 transporters of the NRAMP family - - - 0.0000000557 56.0
YYD3_k127_2748054_0 Glycosyltransferase Family 4 - - - 0.00000001263 64.0
YYD3_k127_2748054_2 PFAM glycosyl transferase group 1 - - - 0.0009716 48.0
YYD3_k127_274823_0 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000003251 244.0
YYD3_k127_274823_1 - - - - 0.00000000000000000000000000000000000000000000755 170.0
YYD3_k127_274823_2 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000001291 113.0
YYD3_k127_274823_3 membrane organization K03641 - - 0.0000000000000000142 85.0
YYD3_k127_274823_4 Serine/threonine phosphatases, family 2C, catalytic domain K01090 - 3.1.3.16 0.0000000001872 66.0
YYD3_k127_2752056_0 Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'- monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1- beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates K06863 - 6.3.4.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 467.0
YYD3_k127_2752056_1 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 362.0
YYD3_k127_2752056_10 - - - - 0.000000000000000000245 91.0
YYD3_k127_2752056_12 NUDIX domain - - - 0.0000000001101 64.0
YYD3_k127_2752056_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02472 - 1.1.1.336 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 305.0
YYD3_k127_2752056_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000003186 217.0
YYD3_k127_2752056_4 PBS lyase HEAT-like repeat K06072 - 1.14.99.29 0.000000000000000000000000000000000000000000000000000000001389 204.0
YYD3_k127_2752056_5 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000007896 200.0
YYD3_k127_2752056_6 - - - - 0.0000000000000000000000000000000000000000007361 160.0
YYD3_k127_2752056_7 low-complexity proteins - - - 0.00000000000000000000000000000000007935 138.0
YYD3_k127_2752056_8 response regulator, receiver K07668,K07669 - - 0.00000000000000000000000004587 112.0
YYD3_k127_2752056_9 - - - - 0.000000000000000000000002083 105.0
YYD3_k127_2755417_0 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 297.0
YYD3_k127_2755417_1 Domain of unknown function (DUF371) K09738 - - 0.000000000000000000000000000000000000000000127 162.0
YYD3_k127_275735_0 ATPase family associated with various cellular activities (AAA) K04800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 364.0
YYD3_k127_275735_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 295.0
YYD3_k127_275735_2 - - - - 0.000000000007473 67.0
YYD3_k127_2764784_0 Sodium hydrogen exchanger K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 440.0
YYD3_k127_2764784_1 Similarity to COG0471 Di- and tricarboxylate transporters(Evalue K14445 - - 0.000000000000002055 78.0
YYD3_k127_2764784_2 - - - - 0.0002758 45.0
YYD3_k127_2771065_0 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005785 449.0
YYD3_k127_2771065_1 Anaerobic ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 302.0
YYD3_k127_2771065_2 nucleic-acid-binding protein containing a Zn-ribbon K07068 - - 0.0000000000000000000000000000000000000000001383 163.0
YYD3_k127_2771065_3 conserved protein implicated in secretion - - - 0.00000000000000000000000000000000002024 143.0
YYD3_k127_2771065_4 Enoyl-CoA hydratase - - - 0.0000000001164 64.0
YYD3_k127_277773_0 protein containing caspase domain - - - 0.00000000000000000000000000000000000000000000000000003835 193.0
YYD3_k127_277773_1 Zinc metalloprotease (Elastase) K01400 - 3.4.24.28 0.00000001187 57.0
YYD3_k127_2782455_0 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003759 518.0
YYD3_k127_2782455_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000000000000000007853 184.0
YYD3_k127_278652_1 TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000000000000000000005097 143.0
YYD3_k127_278652_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.00001758 52.0
YYD3_k127_2787216_0 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 1.945e-203 638.0
YYD3_k127_2787216_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 396.0
YYD3_k127_2792239_0 COG0346 Lactoylglutathione lyase and related lyases K15975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 442.0
YYD3_k127_2792239_1 phospholipase Carboxylesterase K06999 - - 0.0000000000000000000000000000000000000000000000000000000000000001409 229.0
YYD3_k127_2810099_0 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 9.952e-230 729.0
YYD3_k127_2810099_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.0000000000000000000002095 101.0
YYD3_k127_2813420_0 Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules K04483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009539 418.0
YYD3_k127_2813420_1 Protein of unknown function (DUF655) K07572 - - 0.00000000000000000000000000000000000000000000000000000000133 204.0
YYD3_k127_2813420_2 Siroheme synthase K02304 - 1.3.1.76,4.99.1.4 0.00000000000000000000000000000000000000000838 156.0
YYD3_k127_2813420_3 RNA polymerase Rpb4 K03051 - 2.7.7.6 0.00000000000000000000000000000000002051 137.0
YYD3_k127_2813420_4 Belongs to the eukaryotic ribosomal protein eL21 family K02889 - - 0.000000000000000000000000000000000042 136.0
YYD3_k127_2832050_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00150 - 1.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 456.0
YYD3_k127_2832050_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 298.0
YYD3_k127_2832050_2 Glutamine amidotransferase of anthranilate synthase K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003914 279.0
YYD3_k127_2835126_0 4Fe-4S binding domain K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008241 309.0
YYD3_k127_2835126_1 - - - - 0.000000000000000000000001104 106.0
YYD3_k127_2839253_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K13798 - 2.7.7.6 0.0 1648.0
YYD3_k127_2839253_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03053 - 2.7.7.6 0.00000000000000000000000000000000006036 134.0
YYD3_k127_2853499_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 364.0
YYD3_k127_2858111_0 - - - - 0.0000000000000000000000000000000000000000000179 169.0
YYD3_k127_2858111_1 PFAM blue (type 1) copper domain protein - - - 0.000000000000000004088 90.0
YYD3_k127_2858111_2 CHRD domain - - - 0.00003947 48.0
YYD3_k127_2858748_0 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.0000000000000000000000000000000000000003839 160.0
YYD3_k127_2858748_1 MOFRL family K11529 - 2.7.1.165 0.0000000000000000000000000000000000001627 151.0
YYD3_k127_2864231_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008253 581.0
YYD3_k127_2864231_1 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001084 270.0
YYD3_k127_2864231_2 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000006692 209.0
YYD3_k127_2864231_3 Belongs to the archaeal adenylate kinase family K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000001137 183.0
YYD3_k127_2868479_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003301 289.0
YYD3_k127_2868479_1 - - - - 0.0000001858 57.0
YYD3_k127_2876575_0 ubiE/COQ5 methyltransferase family K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000003506 264.0
YYD3_k127_2876575_1 ferredoxin - - - 0.00000000000000000000000008619 110.0
YYD3_k127_2880038_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.496e-243 760.0
YYD3_k127_2880038_1 TIGRFAM excinuclease ABC, C subunit K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001133 272.0
YYD3_k127_288089_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 506.0
YYD3_k127_2883609_0 endonuclease activity - - - 0.0000000000000003299 79.0
YYD3_k127_2892170_0 DEAD/H associated K03724 - - 2.392e-254 799.0
YYD3_k127_2892170_1 DEAD/H associated K03724 - - 0.00000000000000000000000000000000000000003228 154.0
YYD3_k127_2899926_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 524.0
YYD3_k127_2899926_1 - - - - 0.0000000000000000000000000000000000000002168 153.0
YYD3_k127_2910864_0 Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs K11131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009024 448.0
YYD3_k127_2910864_1 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000404 147.0
YYD3_k127_2925853_0 DNA methylase K00571,K00590 - 2.1.1.113,2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008061 323.0
YYD3_k127_2925853_1 - - - - 0.00000000000000000000000000308 116.0
YYD3_k127_2926050_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000185 288.0
YYD3_k127_2926050_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000002086 223.0
YYD3_k127_2937467_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 502.0
YYD3_k127_2937467_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 441.0
YYD3_k127_2937467_2 Archaeal transcriptional regulator TrmB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 350.0
YYD3_k127_2937467_3 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K03234 - - 0.000000000000000000000000005668 110.0
YYD3_k127_2943293_0 Succinyl-CoA ligase like flavodoxin domain K18593 - - 3.112e-314 976.0
YYD3_k127_2943293_1 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008341 608.0
YYD3_k127_2943293_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008763 252.0
YYD3_k127_2943293_3 Zinc finger domain - - - 0.000000000000000000000000000000000000000000000000000000000004333 218.0
YYD3_k127_2951154_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000004366 207.0
YYD3_k127_2951723_0 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009405 556.0
YYD3_k127_2951723_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K00836 - 2.6.1.19,2.6.1.76 0.00000000001131 66.0
YYD3_k127_2953016_0 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000000000000000000000000007267 193.0
YYD3_k127_2953016_1 PFAM class II aldolase adducin family protein K01628 - 4.1.2.17 0.00000000000000000000000000000003774 133.0
YYD3_k127_2954254_0 PFAM beta-lactamase domain protein K06897 - 2.5.1.105 0.00000000000000000000000000000000000000000000000000000000000000000000000003669 261.0
YYD3_k127_2954254_1 - - - - 0.0000000000000000000000000002444 116.0
YYD3_k127_2954916_0 PFAM Iron-containing alcohol dehydrogenase K18602 - - 0.000000000000000000000000000000000000000000000000000000000001912 210.0
YYD3_k127_2954916_1 Psort location Cytoplasmic, score 9.97 - - - 0.0000000000001707 76.0
YYD3_k127_2955458_0 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 461.0
YYD3_k127_2955458_1 phosphoribosylglycinamide formyltransferase K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000006439 266.0
YYD3_k127_2955458_2 - - - - 0.0000000000000000000009207 98.0
YYD3_k127_299084_0 CoA binding domain K06929 - - 0.0000000000000005378 79.0
YYD3_k127_299084_1 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000003936 61.0
YYD3_k127_2991138_0 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001564 272.0
YYD3_k127_2992988_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K03234 - - 0.0 1112.0
YYD3_k127_2992988_1 Mannosyl-3-phosphoglycerate synthase K05947 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.217 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 461.0
YYD3_k127_2992988_2 - - - - 0.0000000000000347 75.0
YYD3_k127_3011132_0 Belongs to the universal stress protein A family - - - 0.0009127 49.0
YYD3_k127_3017272_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 499.0
YYD3_k127_3017272_1 metal-dependent protease of the PAD1 JAB1 superfamily K21140 - 3.13.1.6 0.0000000000000000005188 92.0
YYD3_k127_3017738_0 Protein of unknown function, DUF255 K06888 - - 1.472e-258 815.0
YYD3_k127_3028407_0 PFAM Integral membrane protein TerC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 338.0
YYD3_k127_3028407_1 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000002772 240.0
YYD3_k127_3028407_2 MBOAT, membrane-bound O-acyltransferase family - - - 0.00000000000000000000000000006498 120.0
YYD3_k127_3036178_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000724 216.0
YYD3_k127_3036178_1 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000001285 193.0
YYD3_k127_3036178_2 ERCC4 domain K10896 - - 0.00000000000000000000000000000000000000000000003076 187.0
YYD3_k127_3051286_0 ABC 3 transport family K02075,K09816,K09819 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007742 255.0
YYD3_k127_3051286_1 ABC transporter K09820,K11710,K19973 - 3.6.3.35 0.000000000000000000000000000000001048 133.0
YYD3_k127_305447_0 IMP dehydrogenase activity - - - 0.00000000003237 64.0
YYD3_k127_3059929_0 Archaeal Nre, N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 422.0
YYD3_k127_3066481_0 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005239 312.0
YYD3_k127_3066481_1 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000002 205.0
YYD3_k127_3066481_2 ABC-type antimicrobial peptide transport system, permease component - - - 0.0000000000000000000000000000004619 127.0
YYD3_k127_3069793_0 Domain of unknown function (DUF373) K08975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 407.0
YYD3_k127_3069793_1 Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids K15888 - 2.5.1.89 0.00000000000000000000000000000002696 128.0
YYD3_k127_3069793_2 Domain of unknown function (DUF373) K08975 - - 0.000000000000002727 76.0
YYD3_k127_3071009_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 527.0
YYD3_k127_3071009_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005724 409.0
YYD3_k127_3071009_2 resolvase K14060 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007505 308.0
YYD3_k127_3078018_0 - - - - 0.00000000000000000000003997 103.0
YYD3_k127_3078018_1 Cupredoxin-like domain - - - 0.0000000000001438 76.0
YYD3_k127_3078018_2 Cupredoxin-like domain - - - 0.0000002499 53.0
YYD3_k127_3078018_3 Lrp/AsnC ligand binding domain - - - 0.000007511 51.0
YYD3_k127_3078018_4 Winged helix-turn-helix - - - 0.00002315 47.0
YYD3_k127_3083387_0 COG3546 Mn-containing catalase K07217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006533 402.0
YYD3_k127_3134032_0 Purple acid Phosphatase, N-terminal domain - - - 0.0000000000000000000000000008467 129.0
YYD3_k127_3134032_1 amine dehydrogenase activity - - - 0.00008815 55.0
YYD3_k127_3134032_2 PFAM blue (type 1) copper domain protein - - - 0.0003134 46.0
YYD3_k127_3152426_0 aspartate-semialdehyde dehydrogenase K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 532.0
YYD3_k127_3152426_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000004469 245.0
YYD3_k127_3152426_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000003491 174.0
YYD3_k127_3178955_0 DNA polymerase type-B family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 576.0
YYD3_k127_3179422_0 Zinc finger domain - - - 0.000000000000000000000000000000008676 129.0
YYD3_k127_3179422_1 DoxX-like family - - - 0.000000000000000000006397 98.0
YYD3_k127_3181888_0 Predicted membrane protein (DUF2070) K08979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001521 279.0
YYD3_k127_3181888_1 Belongs to the SUI1 family K03113 - - 0.0000000000000000000000000000000000000000000000000002194 186.0
YYD3_k127_3181888_2 Sec61beta family - - - 0.00000000000000000001786 91.0
YYD3_k127_3186304_0 Zinc-binding dehydrogenase K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 395.0
YYD3_k127_3189774_0 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000008835 158.0
YYD3_k127_3248266_0 Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules K04483 GO:0000150,GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0033554,GO:0034622,GO:0034641,GO:0042148,GO:0042623,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0045003,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 360.0
YYD3_k127_3248266_1 Protein of unknown function (DUF790) K09744 - - 0.000000000001428 73.0
YYD3_k127_3261021_0 Involved in regulation of DNA replication K10725 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 556.0
YYD3_k127_3261021_1 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02323 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000005014 251.0
YYD3_k127_3262670_0 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases K15510,K21835 - 1.1.98.2,1.1.98.5 0.000000000000000000000000000000000000000000000000000000000000000005826 238.0
YYD3_k127_3262670_1 Transcriptional regulator - - - 0.000000000000003003 78.0
YYD3_k127_3262670_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000004554 74.0
YYD3_k127_3263585_0 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005773 260.0
YYD3_k127_3263585_1 SMART Nucleotide binding protein, PINc K07158 - - 0.00002855 51.0
YYD3_k127_3315498_0 Exchanges the guanine residue with 7-cyano-7- deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- loop) of archaeal tRNAs K18779 - 2.4.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009131 612.0
YYD3_k127_3315498_1 3-isopropylmalate dehydratase, small subunit K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000005578 229.0
YYD3_k127_3315498_2 PFAM Like-Sm ribonucleoprotein, core - - - 0.00000000000000000000000000000000000000000000000000000000009308 207.0
YYD3_k127_3341368_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K03330 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.7 0.00000000000000881 77.0
YYD3_k127_3341368_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000002212 66.0
YYD3_k127_3361354_0 TIGRFAM glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 - 2.6.1.16 5.923e-226 714.0
YYD3_k127_3361354_1 Belongs to the UPF0284 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 366.0
YYD3_k127_3361354_2 PFAM S-layer - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 327.0
YYD3_k127_3361354_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 284.0
YYD3_k127_3361354_4 Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX K17759 - 5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000004799 242.0
YYD3_k127_3361354_5 Translin family K07477 - - 0.0000000000000000000000000000000000000000000000000003611 191.0
YYD3_k127_3361354_6 A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products - - - 0.0000000000000000000000000000000000000000000002031 172.0
YYD3_k127_3365634_0 - - - - 0.0000000000000000000000000005076 119.0
YYD3_k127_3365634_1 CHRD domain - - - 0.0000000000003975 76.0
YYD3_k127_3365634_2 - - - - 0.00000000001205 72.0
YYD3_k127_3365634_3 nitrogen regulation protein NR(I) K07712 - - 0.0001872 49.0
YYD3_k127_3377575_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 335.0
YYD3_k127_3387085_0 PFAM Alcohol dehydrogenase GroES-like domain K00001,K13953,K18382 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008143 433.0
YYD3_k127_3387085_1 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000001858 230.0
YYD3_k127_3405185_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 325.0
YYD3_k127_3405185_1 Phosphoglycolate phosphatase K22223 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006346 295.0
YYD3_k127_3420977_1 Thij pfpi - - - 0.000000000000000000000000001374 115.0
YYD3_k127_3421375_0 Belongs to the peptidase M24B family K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000359 270.0
YYD3_k127_3421375_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000007733 199.0
YYD3_k127_3430594_0 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000000000000005538 201.0
YYD3_k127_3430594_1 Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H ACA, box C D and box C' D' sRNAs K02936 - - 0.00000000000000000000000000000000000000000000000000001838 190.0
YYD3_k127_3430594_2 Belongs to the eukaryotic ribosomal protein eS28 family K02979 - - 0.000000000000000000000000000002345 120.0
YYD3_k127_3430594_3 Binds to the 23S rRNA K02896 - - 0.000000000000000000000000000003384 120.0
YYD3_k127_3432699_0 High-affinity Fe2 Pb2 permease K07243 - - 2.311e-219 706.0
YYD3_k127_3432699_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 570.0
YYD3_k127_3432699_2 Carbon-nitrogen hydrolase K11206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 304.0
YYD3_k127_3432699_3 Catalyzes two subsequent steps in gluconeogenesis the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P) K01622 - 3.1.3.11,4.1.2.13 0.0000000000000000000000000000000000000008049 148.0
YYD3_k127_3432699_4 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000001133 149.0
YYD3_k127_3432699_5 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.00000000000000000000000001431 112.0
YYD3_k127_3432699_6 transcriptional regulators - - - 0.0000000000000001225 83.0
YYD3_k127_3435133_0 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002282 288.0
YYD3_k127_3436790_0 Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes K03622 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000003387 128.0
YYD3_k127_344095_0 An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 442.0
YYD3_k127_3441615_0 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 403.0
YYD3_k127_3441615_1 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003954 261.0
YYD3_k127_3471_0 Phosphomethylpyrimidine kinase K21219 - 2.5.1.3,2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 297.0
YYD3_k127_3471_1 DnaJ molecular chaperone homology domain K03686 - - 0.00000000000000000000000000000000000002918 147.0
YYD3_k127_3471_2 ATP synthase (F/14-kDa) subunit K02122 - - 0.000000000000000000000004144 102.0
YYD3_k127_3502262_0 Alpha mannosidase, middle domain K01191 - 3.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000003273 269.0
YYD3_k127_3502262_1 Hydrolyzes mannosyl-3-phosphoglycerate (MPG) to form the osmolyte mannosylglycerate (MG) K07026 - 3.1.3.70 0.000000000000000000000000000000000000000001204 167.0
YYD3_k127_3502262_2 DnaJ-class molecular chaperone with C-terminal Zn finger domain - - - 0.000000000000000000000000000000000000004176 154.0
YYD3_k127_3504972_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000003503 91.0
YYD3_k127_3506031_0 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006018 258.0
YYD3_k127_3506031_1 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000005705 161.0
YYD3_k127_3506387_0 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 317.0
YYD3_k127_351645_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 5.098e-203 644.0
YYD3_k127_351645_1 response regulator, receiver - - - 0.0000000008955 64.0
YYD3_k127_3553238_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01535,K01537 - 3.6.3.6,3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000004904 251.0
YYD3_k127_356725_0 Phosphoesterase family K01114 - 3.1.4.3 0.000000000000000000000000000000000000000000000000000006319 213.0
YYD3_k127_356725_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000005964 81.0
YYD3_k127_3583362_0 Amino acid kinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003965 520.0
YYD3_k127_3583362_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007678 400.0
YYD3_k127_3583362_2 phosphoribosyltransferase K07101 - - 0.00000000002985 66.0
YYD3_k127_3588206_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000004943 183.0
YYD3_k127_3588206_1 - - - - 0.000000000003411 72.0
YYD3_k127_3609167_0 UbiD family decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007537 571.0
YYD3_k127_3609167_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000001139 57.0
YYD3_k127_364509_0 PFAM regulatory protein, ArsR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 416.0
YYD3_k127_364509_1 - - - - 0.000000000001128 71.0
YYD3_k127_3667567_0 Alpha beta hydrolase - - - 0.0000000000000000000000006967 117.0
YYD3_k127_3682192_1 Transcriptional regulator - - - 0.00000000000000001879 85.0
YYD3_k127_3682192_2 DUF72 domain containing protein - - - 0.00000000000000001958 88.0
YYD3_k127_3682192_3 Dodecin K09165 - - 0.000000003511 60.0
YYD3_k127_3682192_4 Protein of unknown function DUF72 - - - 0.0000001378 54.0
YYD3_k127_36929_0 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000000000000000000000000000001213 149.0
YYD3_k127_36929_1 - - - - 0.0000000000000000002103 91.0
YYD3_k127_369389_0 SMART alpha amylase, catalytic sub domain - - - 0.000000000000000000000000000000000000000000000000009284 182.0
YYD3_k127_369389_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000002472 126.0
YYD3_k127_3710693_0 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000001821 259.0
YYD3_k127_3710693_1 K homology RNA-binding domain K06961 - - 0.000000000000000000000000000000000000000000000000000000004924 204.0
YYD3_k127_3710693_2 Protein of unknown function (DUF424) K09148 - - 0.0000000000000000000000293 103.0
YYD3_k127_3718768_0 - - - - 0.00000000000000000000004717 106.0
YYD3_k127_3718768_1 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000001164 64.0
YYD3_k127_3721806_0 pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 1.228e-242 765.0
YYD3_k127_3721806_1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 518.0
YYD3_k127_3721806_2 Belongs to the PdxS SNZ family K06215 - 4.3.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 514.0
YYD3_k127_3721806_3 Archaeal ammonia monooxygenase subunit A (AmoA) K10944 - 1.14.18.3,1.14.99.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 418.0
YYD3_k127_3721806_4 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 - 4.3.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000007804 251.0
YYD3_k127_3721806_5 - - - - 0.00000000000000000000000000000000000000000001337 163.0
YYD3_k127_3721806_6 - - - - 0.00000000000000000000007344 101.0
YYD3_k127_373123_0 Cell division protein 48 (CDC48), domain 2 K13525 - - 8.914e-288 892.0
YYD3_k127_373123_1 Large family of predicted nucleotide-binding domains K06865 - - 9.55e-240 754.0
YYD3_k127_373123_2 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 481.0
YYD3_k127_373123_3 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000405 123.0
YYD3_k127_3750687_0 Belongs to the TPP enzyme family K00156,K00158 - 1.2.3.3,1.2.5.1 4.126e-200 634.0
YYD3_k127_3753936_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 426.0
YYD3_k127_3753936_1 Histidine kinase - - - 0.000000000000005687 84.0
YYD3_k127_3753936_2 DoxX family K15977 - - 0.000009455 53.0
YYD3_k127_3770166_0 Ribbon-helix-helix protein, copG family K07722 - - 0.00000000000000000000000000000000000000000000845 166.0
YYD3_k127_3770166_1 DNA polymerase K02347 - - 0.00000000000000406 83.0
YYD3_k127_3776493_0 Large-conductance mechanosensitive channel, MscL K03282 - - 0.0000000000000000000000000000000001227 137.0
YYD3_k127_381195_0 - - - - 0.00000000000000000000000000000000000000000000000001213 184.0
YYD3_k127_381195_1 - - - - 0.0000000000000000000000000000008366 124.0
YYD3_k127_384638_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004226 413.0
YYD3_k127_384638_1 Nicotinamide-nucleotide adenylyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000001663 226.0
YYD3_k127_384638_2 Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes K03622 - - 0.00000000002794 63.0
YYD3_k127_3863270_0 amino acid K16263 - - 0.0000000000000000000000000000000000000000008662 164.0
YYD3_k127_3863270_1 PFAM CBS domain containing protein - - - 0.0000000000000000000001531 102.0
YYD3_k127_3891278_0 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006214 279.0
YYD3_k127_3891278_1 PQQ enzyme repeat - - - 0.00000000000000000000001146 106.0
YYD3_k127_3893654_0 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 595.0
YYD3_k127_3893654_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 292.0
YYD3_k127_3893654_2 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000000001716 155.0
YYD3_k127_3893654_3 - - - - 0.00000000000000000000000000000000001426 143.0
YYD3_k127_3918313_0 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000789 55.0
YYD3_k127_3931213_0 RNA binding K07581 - - 0.00000000000000000000003472 105.0
YYD3_k127_3931213_2 Belongs to the eukaryotic ribosomal protein eS1 family K02984 - - 0.0000001319 53.0
YYD3_k127_3931213_3 Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends K03537 GO:0000966,GO:0001682,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0030677,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0051604,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1902494,GO:1902555,GO:1905348,GO:1990904 3.1.26.5 0.000007815 54.0
YYD3_k127_3938858_0 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K17830 - 1.3.1.101,1.3.7.11 0.00000000000000000000000000000000000000000000000000000000004634 207.0
YYD3_k127_3938858_1 - - - - 0.00000000000000000001286 94.0
YYD3_k127_394245_1 - - - - 0.0000000000000000000000000001038 117.0
YYD3_k127_394245_2 Protein of unknown function (DUF1059) - - - 0.00000000152 60.0
YYD3_k127_394245_3 HxlR-like helix-turn-helix - - - 0.000002095 50.0
YYD3_k127_3943274_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 351.0
YYD3_k127_3943274_1 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000000001876 134.0
YYD3_k127_3954699_0 COG1335 Amidases related to nicotinamidase K09020 - 3.5.1.110 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002328 275.0
YYD3_k127_3954699_1 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000001663 170.0
YYD3_k127_3962289_0 May be involved in maturation of the 30S ribosomal subunit K02966 - - 0.000000000000000000000000000000000000000000000000000000000002765 211.0
YYD3_k127_3962289_1 Binds to the 23S rRNA K02929 - - 0.0000000000000000000000000000000000000000002433 159.0
YYD3_k127_3962289_2 - - - - 0.000000000000000000000000000000000002528 145.0
YYD3_k127_3962289_3 Belongs to the PDCD5 family K06875 - - 0.0000000000000000000000000000000006291 132.0
YYD3_k127_3962289_4 Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA K14568 - 2.1.1.260 0.00000000000000000000000003893 111.0
YYD3_k127_3962289_5 Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends K03540 - 3.1.26.5 0.00000000000000000000004937 101.0
YYD3_k127_3962289_6 ribosomal protein K02978 - - 0.0000000000000002581 79.0
YYD3_k127_3962289_7 MobA-like NTP transferase domain K19712 - 2.7.7.62 0.00000008617 57.0
YYD3_k127_3962392_0 3-carboxymuconate cyclase K07404 - 3.1.1.31 0.0000000000002416 74.0
YYD3_k127_3984009_0 PFAM aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 539.0
YYD3_k127_3984009_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 451.0
YYD3_k127_3984009_2 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 396.0
YYD3_k127_3984009_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 337.0
YYD3_k127_3984009_4 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.0000000000000000000000000000000000000001284 152.0
YYD3_k127_3984009_5 Siroheme synthase K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000001699 116.0
YYD3_k127_4024741_0 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001386 244.0
YYD3_k127_4024741_1 Sigma factor PP2C-like phosphatases - - - 0.00000002047 56.0
YYD3_k127_403813_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis K04479 - 2.7.7.7 0.0000000000000000000000000000000000000000752 155.0
YYD3_k127_403813_1 Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes K03622 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000002431 148.0
YYD3_k127_403813_2 - - - - 0.0000000000000005123 80.0
YYD3_k127_4047600_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001039 266.0
YYD3_k127_4047600_1 - - - - 0.0000000000000000000000000000000000000000000004084 171.0
YYD3_k127_4047600_2 - - - - 0.000000000002235 74.0
YYD3_k127_4047600_3 - - - - 0.0001668 44.0
YYD3_k127_4070109_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000008517 81.0
YYD3_k127_4105865_0 COG1335 Amidases related to nicotinamidase K09020 - 3.5.1.110 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005531 299.0
YYD3_k127_4105865_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K01953,K06927 - 6.3.1.14,6.3.5.4 0.00000000000000000000000000000000000005539 146.0
YYD3_k127_4117124_0 carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 338.0
YYD3_k127_4117124_1 Functions by promoting the formation of the first peptide bond K03263 - - 0.00000000000000000000000000000000000000000000000000000000228 203.0
YYD3_k127_4117124_2 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000001594 93.0
YYD3_k127_4117124_3 COG3325 Chitinase K01183 - 3.2.1.14 0.0000001215 64.0
YYD3_k127_4128536_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 537.0
YYD3_k127_4128536_1 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003001 272.0
YYD3_k127_4128536_2 Nudix hydrolase K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000001864 185.0
YYD3_k127_4128536_3 Transcription elongation factor - - - 0.000000000000000000000000000000000000002137 152.0
YYD3_k127_4128536_5 Asparaginase K01424 - 3.5.1.1 0.0000000005847 61.0
YYD3_k127_4128536_6 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) - - - 0.00000006605 54.0
YYD3_k127_4131945_0 Glycogen debranching enzyme K01194 - 3.2.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 352.0
YYD3_k127_4131945_1 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000004248 177.0
YYD3_k127_41441_0 - - - - 0.00000001343 60.0
YYD3_k127_41441_1 Sensory domain in DIguanylate Cyclases and Two-component system - - - 0.00001526 54.0
YYD3_k127_4155565_0 Translation initiation factor 2, alpha subunit K03237 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 354.0
YYD3_k127_4155565_1 PFAM D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000003337 262.0
YYD3_k127_4155565_2 ATP corrinoid adenosyltransferase K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000005846 165.0
YYD3_k127_4155565_3 more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA K11130 - - 0.0000000000001888 71.0
YYD3_k127_4155565_4 Periplasmic copper-binding protein (NosD) - - - 0.00000000007886 72.0
YYD3_k127_4157272_0 HMGL-like K01649 - 2.3.3.13 1.474e-217 680.0
YYD3_k127_4157272_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K05830 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203 471.0
YYD3_k127_4157272_2 Lysine biosynthesis K05827 - 6.3.2.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 414.0
YYD3_k127_4157272_3 Catalyzes the release of L-lysine from LysW -gamma-L- lysine and the release of L-ornithine from LysW -L-ornithine K05831 - - 0.00000000000000000000000000000000000000000000000000000000000000008438 223.0
YYD3_k127_4157272_4 helix_turn_helix ASNC type - - - 0.00000000000000000000000000000000000000224 151.0
YYD3_k127_4157272_5 lysine biosynthesis protein LysW K05826 - - 0.00000000000000000000007406 98.0
YYD3_k127_4161124_0 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005265 425.0
YYD3_k127_4161124_1 Universal stress protein - - - 0.0000000000001418 77.0
YYD3_k127_4188111_0 Sulfite reductase K00392 - 1.8.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 470.0
YYD3_k127_4188111_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 412.0
YYD3_k127_4188111_2 Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs K07254 - 2.1.1.206 0.00000000000000000000000000000000000000000000000000000000002489 210.0
YYD3_k127_4188111_3 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000003689 190.0
YYD3_k127_4188111_4 Contacts the emerging nascent chain on the ribosome K03626 - - 0.0000000000000000000000000000000000000000000000000248 181.0
YYD3_k127_4188111_5 Patch-forming domain C2 of tRNA-guanine transglycosylase K07398 - - 0.0000000000000000000000000000000000000000000000003447 180.0
YYD3_k127_4188111_6 transcription factor, homolog of eukaryotic MBF1 K03627 - - 0.0000000000000000000000000000000002732 137.0
YYD3_k127_4188111_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000002101 104.0
YYD3_k127_4188588_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002064 274.0
YYD3_k127_4188588_1 Protein of unknown function (DUF2795) - - - 0.0000000000000000000000000000002579 129.0
YYD3_k127_4188588_2 Protein of unknown function (DUF2795) - - - 0.0000000000000092 77.0
YYD3_k127_4202229_0 Mediates influx of magnesium ions K03284 - - 0.00000000000000001708 88.0
YYD3_k127_4210379_0 PFAM Alcohol dehydrogenase GroES-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 602.0
YYD3_k127_4210379_1 adenylosuccinate lyase K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 581.0
YYD3_k127_4210379_2 HpcH/HpaI aldolase/citrate lyase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 306.0
YYD3_k127_4210379_3 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000001439 238.0
YYD3_k127_4210379_4 Uncharacterised protein family UPF0052 K11212 - 2.7.8.28 0.0000000000000000000000000000000000000000000000000006073 190.0
YYD3_k127_4210379_5 Guanylyl transferase CofC like K14941 - 2.7.7.68 0.00000000000000000000000000000000000002221 151.0
YYD3_k127_4210379_6 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000001846 91.0
YYD3_k127_4215684_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 432.0
YYD3_k127_4215684_1 Diphthamide synthase K06927 - 6.3.1.14 0.00000000000000000000000000000000000000000000000000000000006706 210.0
YYD3_k127_4216872_0 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.00000000000000000000000000000000000000000000000000000000004916 214.0
YYD3_k127_4216872_1 PFAM Isochorismatase - - - 0.0000000000000000000000000000000000000000000000000006073 190.0
YYD3_k127_4216872_2 Universal stress protein - - - 0.00000000000000000009652 93.0
YYD3_k127_425478_0 ATP synthase (C/AC39) subunit K02119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 325.0
YYD3_k127_425478_1 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000001153 238.0
YYD3_k127_425478_2 H subunit K02107 - - 0.00000000000000001094 87.0
YYD3_k127_4265614_0 Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 K03243 - - 3.877e-278 865.0
YYD3_k127_4265614_1 Thioredoxin K03671 - - 0.0000000000000000000000000000000000000000000004056 168.0
YYD3_k127_4265614_2 Archease protein family (MTH1598/TM1083) - - - 0.000000000000000000000000005886 117.0
YYD3_k127_4287603_0 SMC proteins Flexible Hinge Domain K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006077 392.0
YYD3_k127_4287603_1 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000009005 227.0
YYD3_k127_4287603_2 Uncharacterized protein family (UPF0051) K09014 - - 0.000000001261 58.0
YYD3_k127_4339899_0 TIGRFAM poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 448.0
YYD3_k127_4339899_1 - - - - 0.000000000000000000000000000000000514 135.0
YYD3_k127_4384973_0 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000001628 206.0
YYD3_k127_4386900_0 PFAM class II aldolase adducin family protein K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000003211 169.0
YYD3_k127_4386900_1 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000001149 144.0
YYD3_k127_4388325_0 Belongs to the universal ribosomal protein uS5 family K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 349.0
YYD3_k127_4388325_1 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003166 270.0
YYD3_k127_4388325_2 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000000000000000000000000000008819 225.0
YYD3_k127_4388325_3 ribosomal protein K02907 - - 0.00000000000000000000000000000000000000000000000000002948 191.0
YYD3_k127_4388325_4 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000006801 116.0
YYD3_k127_443027_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 430.0
YYD3_k127_443027_1 Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea K00096 - 1.1.1.261 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 430.0
YYD3_k127_443027_2 Peptidyl-prolyl cis-trans K01802 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 320.0
YYD3_k127_443027_3 RNA-binding protein contains TRAM domain - - - 0.000000000000000009478 86.0
YYD3_k127_4453699_0 PspA/IM30 family K03969 - - 0.00000000000000000000000000000000000000000000000000000000000003975 221.0
YYD3_k127_4453699_1 Conserved repeat domain - - - 0.00000000000006336 78.0
YYD3_k127_4478655_0 phosphatase 2C K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000001022 175.0
YYD3_k127_4478655_1 Protein of unknown function DUF72 - - - 0.00000000000000000000114 100.0
YYD3_k127_4478655_2 response regulator, receiver - - - 0.00000002536 60.0
YYD3_k127_4490233_0 phosphoglycerate mutase K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002661 534.0
YYD3_k127_4490233_1 Luciferase-like monooxygenase K14728 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 350.0
YYD3_k127_4490233_2 Transcriptional regulator K07108 - - 0.0000000000000000000000000000000000000000000000000000007193 194.0
YYD3_k127_4497897_0 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 476.0
YYD3_k127_452796_0 PQQ enzyme repeat - - - 0.0000000000000000000000000000000000003536 153.0
YYD3_k127_453827_0 Domain of unknown function (DUF1297) K06863 - 6.3.4.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009205 461.0
YYD3_k127_453827_1 hydrolase (HAD superfamily) K01091,K01560,K01561,K07025 - 3.1.3.18,3.8.1.2,3.8.1.3 0.000000000000000000000000000000000000000000000000000000001412 208.0
YYD3_k127_4541874_0 CoA binding domain K06929 - - 0.00005972 45.0
YYD3_k127_4544637_0 Cytochrome P450 - - - 0.0000000000000000002341 95.0
YYD3_k127_4544637_2 Belongs to the SUI1 family K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000009959 67.0
YYD3_k127_4553605_0 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000115 226.0
YYD3_k127_4560692_0 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000001592 158.0
YYD3_k127_4560692_1 ASCH domain - - - 0.00000000000000000000000000000003338 129.0
YYD3_k127_4560692_2 PFAM response regulator receiver - - - 0.0001037 48.0
YYD3_k127_4623556_0 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000005455 201.0
YYD3_k127_4623556_1 COG1522 Transcriptional regulators - - - 0.00000000000000000002134 91.0
YYD3_k127_4629035_0 - - - - 0.000000000000000000000000000000007297 130.0
YYD3_k127_4629035_1 Transcriptional regulator - - - 0.000000000000008124 76.0
YYD3_k127_4634656_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 9.036e-233 730.0
YYD3_k127_4634656_1 Histone acetyltransferase K07739 - 2.3.1.48 3.979e-211 668.0
YYD3_k127_4634656_2 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 400.0
YYD3_k127_4634656_3 phosphohydrolase (DHH superfamily) K07097 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 328.0
YYD3_k127_4634656_4 Sua5 YciO YrdC YwlC family K07566 - 2.7.7.87 0.00000000177 59.0
YYD3_k127_4638157_0 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000004885 265.0
YYD3_k127_4638157_1 Cupin - - - 0.000000000000000003824 91.0
YYD3_k127_4638157_2 - - - - 0.00000009868 60.0
YYD3_k127_4694514_0 Ferritin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 314.0
YYD3_k127_4694514_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000001869 222.0
YYD3_k127_4694514_2 - - - - 0.00000000000000000000000000000000000000000002104 166.0
YYD3_k127_4694514_3 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000000000000001323 145.0
YYD3_k127_4718080_0 PFAM Aminotransferase class I and II K04720 - 4.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 302.0
YYD3_k127_4718080_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 295.0
YYD3_k127_4718080_2 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000228 50.0
YYD3_k127_4720093_0 NUDIX domain - - - 0.00000000000000000000000000000000001447 143.0
YYD3_k127_4720093_1 cytochrome-c peroxidase activity - - - 0.0000000000000000000000005611 107.0
YYD3_k127_4720093_2 UbiD family decarboxylase K03182 - 4.1.1.98 0.00000000000000000000006548 99.0
YYD3_k127_4726885_0 NGG1p interacting factor 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 310.0
YYD3_k127_4726885_1 Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe) K15449 - 4.1.3.44 0.00000000000000000000000000000000000000000000000000000001659 201.0
YYD3_k127_4749645_0 Glycosyl transferase family 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 452.0
YYD3_k127_4749645_1 archaeal coiled-coil protein - - - 0.00000000000000000000000000000000000000000000000000000000000186 215.0
YYD3_k127_4767193_0 Circadian clock protein KaiC K06945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003573 280.0
YYD3_k127_4767193_1 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07712 - - 0.0000000000001562 77.0
YYD3_k127_4767193_2 OsmC-like protein - - - 0.000001126 57.0
YYD3_k127_4767193_3 - - - - 0.00000645 52.0
YYD3_k127_4781306_0 Cell division protein 48 (CDC48), domain 2 K13525 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 481.0
YYD3_k127_4781306_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000000001209 235.0
YYD3_k127_4783233_0 response regulator, receiver - - - 0.0000000003583 67.0
YYD3_k127_4791898_0 CBS domain K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 419.0
YYD3_k127_4802923_0 Amino acid permease - - - 0.0000000000000000000000001272 107.0
YYD3_k127_4802923_1 CBS domain - - - 0.00000000000000004642 87.0
YYD3_k127_4814850_0 3-isopropylmalate dehydratase, large subunit K01703 - 4.2.1.33,4.2.1.35 6.777e-230 721.0
YYD3_k127_4814850_1 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03433 - 3.4.25.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 374.0
YYD3_k127_4817137_0 8-amino-7-oxononanoate synthase K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 384.0
YYD3_k127_4817137_1 - - - - 0.000000000000000000009778 94.0
YYD3_k127_4832343_0 TIGRFAM ABC transporter, substrate-binding protein, aliphatic sulfonates family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 301.0
YYD3_k127_4832343_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003205 279.0
YYD3_k127_4855938_0 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.000000000000000000000000000002357 131.0
YYD3_k127_4855938_1 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.000000000000000002697 96.0
YYD3_k127_4855938_2 Belongs to the N(4) N(6)-methyltransferase family K00571,K07319 - 2.1.1.72 0.000000003721 57.0
YYD3_k127_4855938_3 Protein of unknown function (DUF2493) - - - 0.000001413 59.0
YYD3_k127_4872043_0 Sodium hydrogen exchanger - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003678 249.0
YYD3_k127_4872043_1 Domain of unknown function (DUF202) K00389 - - 0.00000000000000000000008514 103.0
YYD3_k127_4882624_0 MGS-like domain K01955 - 6.3.5.5 0.0 1361.0
YYD3_k127_4902304_0 Cell division protein 48 (CDC48), domain 2 K13525 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 312.0
YYD3_k127_4902304_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01581,K01586,K13747 - 4.1.1.17,4.1.1.20,4.1.1.96 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004999 314.0
YYD3_k127_4902430_0 Radical SAM K06937 - - 0.0 1095.0
YYD3_k127_4902430_1 Belongs to the enoyl-CoA hydratase isomerase family K01715,K15019 - 4.2.1.116,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006615 423.0
YYD3_k127_4902430_2 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000619 338.0
YYD3_k127_4902430_3 Cell division protein 48 (CDC48), domain 2 K13525 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 289.0
YYD3_k127_4935377_0 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 321.0
YYD3_k127_4935377_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.00000000007246 66.0
YYD3_k127_4936315_0 Type III restriction enzyme, res subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001722 250.0
YYD3_k127_4936315_1 Ribosome biogenesis protein, C-terminal K09140 - - 0.000000000000000000000000000000000000000000000000002424 186.0
YYD3_k127_4952761_0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 449.0
YYD3_k127_4952761_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 292.0
YYD3_k127_4972731_0 RNase L inhibitor, RLI K06174 - - 1.101e-227 714.0
YYD3_k127_4972731_1 Met-10+ like-protein K15429 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 319.0
YYD3_k127_4972731_2 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000000000000000000000000000000000000000000000000000000001247 256.0
YYD3_k127_4972731_3 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000000000000000000000000000000634 212.0
YYD3_k127_4972731_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000004056 131.0
YYD3_k127_4973709_0 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001162 282.0
YYD3_k127_4973709_1 Domain of unknown function (DUF4443) - - - 0.000000000000000000000000000000000000000000000000000000000000002853 224.0
YYD3_k127_5009541_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.991e-245 767.0
YYD3_k127_5009541_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 474.0
YYD3_k127_5009541_2 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.0000000000000000000000000000000000000000000000000000000007966 215.0
YYD3_k127_5009541_3 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000001679 198.0
YYD3_k127_5009541_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17884 - 2.7.8.39 0.00000000000000000000000000000000000000000000000005226 184.0
YYD3_k127_5009541_5 ribosomal protein K02976 - - 0.0000000000000000000000000000000000000000000001185 169.0
YYD3_k127_5009541_6 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000005146 94.0
YYD3_k127_5013802_0 GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000002111 193.0
YYD3_k127_5013802_1 - - - - 0.0000000000000000000000000000000000000000000000004492 183.0
YYD3_k127_5013802_2 Belongs to the class-I aminoacyl-tRNA synthetase family - - - 0.00000000000000000000000000000000001433 136.0
YYD3_k127_5013802_3 zinc-ribbon domain - - - 0.000000000000000000000000000005335 123.0
YYD3_k127_5016764_0 DNA Topoisomerase I (eukaryota) K03163 - 5.99.1.2 1.83e-228 720.0
YYD3_k127_5016764_1 Radical SAM K11781 - 2.5.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 574.0
YYD3_k127_5016764_2 Radical SAM K11780 - 2.5.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006973 430.0
YYD3_k127_5016764_3 - - - - 0.00000000000000000000000000000001144 129.0
YYD3_k127_5016764_4 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.000000000003547 66.0
YYD3_k127_5042069_0 COG0530 Ca2 Na antiporter K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009329 406.0
YYD3_k127_5042069_1 Binds directly to 23S rRNA. Probably involved in E site tRNA release K02863 - - 0.0000000000000000000000002977 107.0
YYD3_k127_507141_0 Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 311.0
YYD3_k127_507141_1 protein (ATP-grasp superfamily) K07159 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001022 257.0
YYD3_k127_507141_2 - - - - 0.0000000000000000000000002407 110.0
YYD3_k127_507141_3 Winged helix-turn-helix - - - 0.000000000000000000000006686 103.0
YYD3_k127_507141_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01870 - 6.1.1.5 0.00000000000000000003906 91.0
YYD3_k127_5077889_0 Belongs to the class-II aminoacyl-tRNA synthetase family K01868 - 6.1.1.3 3.727e-272 850.0
YYD3_k127_5077889_1 transferase activity, transferring glycosyl groups K00752 - 2.4.1.212 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 331.0
YYD3_k127_5077889_2 - - - - 0.000000000000000000006433 93.0
YYD3_k127_5077889_3 Cellulase (glycosyl hydrolase family 5) K05991 - 3.2.1.123 0.00003142 56.0
YYD3_k127_5080757_0 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000000003047 227.0
YYD3_k127_508658_0 PFAM Aldehyde dehydrogenase K00135,K18601 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000004327 200.0
YYD3_k127_508658_2 to Saccharomyces cerevisiae PFK26 (YIL107C) K00900 GO:0003674,GO:0003824,GO:0003873,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006003,GO:0006109,GO:0006110,GO:0006140,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008443,GO:0009889,GO:0009894,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019219,GO:0019220,GO:0019222,GO:0019637,GO:0030808,GO:0030811,GO:0031323,GO:0031326,GO:0031329,GO:0042325,GO:0043467,GO:0043470,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044464,GO:0046835,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051193,GO:0051196,GO:0062012,GO:0065007,GO:0071704,GO:0080090,GO:1900371,GO:1900542,GO:1901135,GO:1903578,GO:2001169 2.7.1.105 0.0002845 44.0
YYD3_k127_5101777_0 Glycosyltransferase family 28 C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 387.0
YYD3_k127_5101777_1 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002151 276.0
YYD3_k127_5101777_2 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000001051 150.0
YYD3_k127_5101777_3 - - - - 0.00000000000000000000000000006617 123.0
YYD3_k127_5101777_4 Amino acid kinase family K00928 - 2.7.2.4 0.000000000000000001343 87.0
YYD3_k127_511410_0 DEAD DEAH box helicase K06877 - - 4.123e-252 799.0
YYD3_k127_5138895_0 CBS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003971 244.0
YYD3_k127_5150538_0 PFAM GTP cyclohydrolase I K09457 - 1.7.1.13 0.0000000000000000000000111 103.0
YYD3_k127_5159638_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006198 531.0
YYD3_k127_5159638_1 Radical SAM K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000002614 237.0
YYD3_k127_5159638_2 Hydroxymethylglutaryl-coenzyme A synthase N terminal K01641 - 2.3.3.10 0.0000000000002956 71.0
YYD3_k127_5162088_0 - - - - 0.000000000000000000003194 108.0
YYD3_k127_5162088_1 Phage-related minor tail protein - - - 0.00000000000000009628 85.0
YYD3_k127_5174769_0 protein import - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001486 260.0
YYD3_k127_5182928_0 Acyl CoA acetate 3-ketoacid CoA transferase K01026 - 2.8.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496 614.0
YYD3_k127_5182928_1 dehydratase K01724 - 4.2.1.96 0.00002796 54.0
YYD3_k127_5185492_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 522.0
YYD3_k127_5185492_1 Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 - 5.3.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 483.0
YYD3_k127_5185492_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 353.0
YYD3_k127_5185492_3 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 354.0
YYD3_k127_5185492_4 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 341.0
YYD3_k127_5185492_5 Amino acid kinase family K06981 - 2.7.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002056 272.0
YYD3_k127_5185492_6 Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids K00869 - 2.7.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000003901 258.0
YYD3_k127_5185492_7 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000001794 236.0
YYD3_k127_5192329_0 Belongs to the carbamoyltransferase HypF family K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002567 587.0
YYD3_k127_5192329_1 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.00000000009947 63.0
YYD3_k127_519368_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 344.0
YYD3_k127_519368_1 Nodulation protein S (NodS) - - - 0.000000000000000000000000000000000000000005161 164.0
YYD3_k127_519368_2 Polysaccharide biosynthesis protein - - - 0.00000000000008193 71.0
YYD3_k127_519368_3 transferase activity, transferring glycosyl groups - - - 0.000000103 64.0
YYD3_k127_5206492_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 333.0
YYD3_k127_5206492_1 COG0455 ATPases involved in chromosome partitioning K03496,K03609 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 301.0
YYD3_k127_5206492_2 PFAM response regulator receiver K02483 - - 0.000000002817 64.0
YYD3_k127_5217952_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000008852 96.0
YYD3_k127_5218839_0 Chlorophyllase K01061 - 3.1.1.45 0.00000000000000000005468 90.0
YYD3_k127_5218839_1 - - - - 0.00000000001071 69.0
YYD3_k127_5218839_2 PFAM Ion transport K10716 GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005249,GO:0005261,GO:0005267,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0042802,GO:0044425,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098660,GO:0098662 - 0.0001758 50.0
YYD3_k127_5218965_0 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.0000000000000000000000001398 106.0
YYD3_k127_5218965_1 - - - - 0.0000000000000000000004677 104.0
YYD3_k127_5224192_0 Glycosyl transferase family 21 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 333.0
YYD3_k127_5226593_0 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000004787 252.0
YYD3_k127_5226593_1 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.00000000000000000000000000000000000000000007075 169.0
YYD3_k127_5226593_2 Cytidylyltransferase K19712 - 2.7.7.62 0.000000000001824 73.0
YYD3_k127_5234637_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000000000000000000001857 149.0
YYD3_k127_5234637_1 Bacterial Fe(2+) trafficking - - - 0.0000000000000000000000000008672 114.0
YYD3_k127_5234637_2 Hemolysin-type calcium-binding - - - 0.000000000000000008728 91.0
YYD3_k127_5234637_3 - - - - 0.000000000000007886 81.0
YYD3_k127_5234637_4 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0004509 46.0
YYD3_k127_5249065_0 RNA-metabolising metallo-beta-lactamase K07041 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 360.0
YYD3_k127_5249065_1 Putative zinc- or iron-chelating domain K06940 - - 0.0000000000000000000000000000001704 125.0
YYD3_k127_5249140_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006308 537.0
YYD3_k127_5249140_1 DNA methylase K00571,K00590 - 2.1.1.113,2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 484.0
YYD3_k127_5249140_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004699 471.0
YYD3_k127_5249140_3 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 326.0
YYD3_k127_5249140_4 Chorismate mutase type II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 323.0
YYD3_k127_5249140_5 GHMP kinases N terminal domain K00891 - 2.7.1.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 295.0
YYD3_k127_5249140_6 Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate K03785 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000588 203.0
YYD3_k127_525516_0 Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication K04802 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008205 366.0
YYD3_k127_525516_1 - - - - 0.00000000000000000000000000000000000000000000000005379 183.0
YYD3_k127_525516_2 Belongs to the archaeal rpoM eukaryotic RPA12 RPB9 RPC11 RNA polymerase family K03057 - - 0.000000000000000000000000000000001427 132.0
YYD3_k127_525516_3 RNA polymerase Rpb3/Rpb11 dimerisation domain K03056 - 2.7.7.6 0.00000000000000001043 85.0
YYD3_k127_525516_4 - - - - 0.0000000000004662 70.0
YYD3_k127_5257857_0 - - - - 0.00000001507 66.0
YYD3_k127_5270078_0 Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA K03265 - - 1.275e-202 638.0
YYD3_k127_5270078_1 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002714 253.0
YYD3_k127_529158_0 Cobalamin synthesis G C-terminus K02189 - 3.7.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003299 419.0
YYD3_k127_529158_1 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006647 412.0
YYD3_k127_529158_2 Cobalt chelatase (CbiK) K06042 - 5.4.99.60,5.4.99.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001306 286.0
YYD3_k127_5296011_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01870 - 6.1.1.5 0.0 1277.0
YYD3_k127_5301436_0 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000003387 128.0
YYD3_k127_5311634_0 Universal stress protein - - - 0.00000000000000000000000008409 112.0
YYD3_k127_5311634_1 Universal stress protein - - - 0.000000000000000000005363 100.0
YYD3_k127_5316864_0 Part of the ABC transporter complex WtpABC involved in molybdate tungstate import. Responsible for energy coupling to the transport system (By similarity) K02017,K02062,K15497 - 3.6.3.29,3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000005978 235.0
YYD3_k127_5316864_1 PFAM binding-protein-dependent transport systems inner membrane component K02018 - - 0.000000000000935 71.0
YYD3_k127_5317773_0 Nucleotidyl transferase K00966 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 352.0
YYD3_k127_5317773_1 Phosphomethylpyrimidine kinase type-1 K21219 - 2.5.1.3,2.7.1.49,2.7.4.7 0.00000000000000000000000000000949 122.0
YYD3_k127_5318083_1 SnoaL-like domain - - - 0.00000000000003686 78.0
YYD3_k127_5325907_0 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 505.0
YYD3_k127_5325907_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 325.0
YYD3_k127_5325907_2 Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding K04797 - - 0.00000000000000000000000000000000000000002153 156.0
YYD3_k127_5325907_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000001782 84.0
YYD3_k127_535861_0 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 543.0
YYD3_k127_535861_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 294.0
YYD3_k127_535861_2 conserved protein implicated in secretion - - - 0.00000000000000000000000000000000000000000000000000000000000000126 225.0
YYD3_k127_535861_3 oligoendopeptidase F - - - 0.00000000000000000000000000000000000000000000000001951 185.0
YYD3_k127_535861_4 - - - - 0.00000000000000000000000000000000000000009727 160.0
YYD3_k127_536633_0 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000001242 238.0
YYD3_k127_5371212_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006529 518.0
YYD3_k127_5371212_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000003375 218.0
YYD3_k127_5371212_2 Caspase domain - - - 0.0000000000000000000000000000001344 142.0
YYD3_k127_5371212_3 PFAM Pentapeptide repeats (8 copies) - - - 0.0000000004078 73.0
YYD3_k127_5375352_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000001919 111.0
YYD3_k127_5375352_1 Glycosyl transferases group 1 - - - 0.000000000000000000000001517 115.0
YYD3_k127_5375352_2 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000008887 104.0
YYD3_k127_5394740_0 transcriptional - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 302.0
YYD3_k127_5394740_1 conserved protein implicated in secretion - - - 0.0000000000000000000000000000000000008891 148.0
YYD3_k127_5394740_2 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000001417 104.0
YYD3_k127_5399121_0 - - - - 0.0000000000000000000003655 104.0
YYD3_k127_5399121_1 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.0000000001513 63.0
YYD3_k127_5399121_2 response regulator K03413 - - 0.00005725 48.0
YYD3_k127_5399121_3 Response regulator receiver domain protein - - - 0.0001088 45.0
YYD3_k127_5400510_0 fumarate reductase flavoprotein K00239 - 1.3.5.1,1.3.5.4 1.73e-313 966.0
YYD3_k127_5400510_1 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 373.0
YYD3_k127_5400510_2 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 - - 0.0000000000000000000000000000000000000000000000000000000000000000003753 232.0
YYD3_k127_5400510_3 Iron-sulfur cluster assembly protein - - - 0.000000000000000000000000000000000000000000002486 166.0
YYD3_k127_5400510_4 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 - - 0.00000000000000000000000000000000000000009141 154.0
YYD3_k127_5400510_5 argininosuccinate lyase K01755 - 4.3.2.1 0.0000000000000000000000000000000003592 136.0
YYD3_k127_5414622_0 Isocitrate isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 333.0
YYD3_k127_5414622_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000823 267.0
YYD3_k127_5440820_0 COG3316 Transposase and inactivated derivatives - - - 0.0000000006203 68.0
YYD3_k127_5452813_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151 406.0
YYD3_k127_5452813_1 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000008334 120.0
YYD3_k127_5452813_2 Cobalamin B12-binding domain protein - - - 0.0000000000001015 77.0
YYD3_k127_5452953_0 Sulfite reductase K00392 - 1.8.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 455.0
YYD3_k127_5452953_1 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 403.0
YYD3_k127_5452953_2 Belongs to the small heat shock protein (HSP20) family - - - 0.0000000000000000000000000000000000000282 147.0
YYD3_k127_5468321_0 PFAM Adenosine specific kinase K09129 - - 0.000000000000000000000000000000000000000000000000000000000394 205.0
YYD3_k127_5468858_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000009543 233.0
YYD3_k127_5468858_1 - - - - 0.000000004872 65.0
YYD3_k127_5487216_0 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs K07573 - - 0.00000000000000000000000000000000000000000000000000000000001123 212.0
YYD3_k127_5487216_1 F5/8 type C domain - - - 0.00000000000000000000000000000000000000000008077 182.0
YYD3_k127_5487216_2 Domain of unknown function (DUF2024) - - - 0.00000000000000000000000000000000000000141 148.0
YYD3_k127_5487216_3 Belongs to the UPF0147 family K09721 - - 0.000000000000000000000002731 104.0
YYD3_k127_5487216_4 SPTR CHU large protein - - - 0.00000000147 71.0
YYD3_k127_5487611_0 Luciferase-like monooxygenase K14728 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 322.0
YYD3_k127_5487611_1 exonuclease of the beta-lactamase fold involved in RNA processing K07577 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001311 283.0
YYD3_k127_5529707_0 Carbamoyl-phosphate synthase L chain K18603 - 6.4.1.2,6.4.1.3 4.952e-231 721.0
YYD3_k127_5529707_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K18604 - 2.1.3.15,6.4.1.2,6.4.1.3 3.439e-228 715.0
YYD3_k127_5529707_2 - K03646 - - 0.0000000000000000001575 89.0
YYD3_k127_5534282_0 DEAD DEAH box helicase K06877 - - 0.00000000000000000000000000000000000000000000000000006031 189.0
YYD3_k127_5534282_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000267 126.0
YYD3_k127_5534282_2 antibiotic catabolic process K18235 - - 0.00000000000000000000000000005161 120.0
YYD3_k127_5549797_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 304.0
YYD3_k127_5549797_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000003296 170.0
YYD3_k127_5549797_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000002505 102.0
YYD3_k127_5549797_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000001368 63.0
YYD3_k127_5554548_0 ThiJ PfpI - - - 0.0000000000000000000000000001575 117.0
YYD3_k127_5554548_1 F420-dependent enzyme K07005 - - 0.0000000000003655 72.0
YYD3_k127_5554548_2 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000007118 67.0
YYD3_k127_5558564_0 Diphthamide biosynthesis K07561 - 2.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 480.0
YYD3_k127_5558564_1 Pterin binding enzyme K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 294.0
YYD3_k127_5568739_0 domain, Protein - - - 0.00000007254 60.0
YYD3_k127_5570257_0 DNA primase activity - - - 0.000000000000000000000000000000000000000000001166 186.0
YYD3_k127_5576722_0 Phosphoadenosine phosphosulfate reductase family K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 361.0
YYD3_k127_5576722_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 358.0
YYD3_k127_5576722_2 Catalyzes the conversion of dihydroorotate to orotate K00226,K00254,K17723,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.1,1.3.1.14,1.3.5.2,1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000917 346.0
YYD3_k127_5576722_3 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B K02823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000169 282.0
YYD3_k127_5576722_4 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000006112 149.0
YYD3_k127_5589209_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 516.0
YYD3_k127_5589209_1 Lysine biosynthesis K05827 - 6.3.2.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 384.0
YYD3_k127_5589209_2 Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily K05829 - - 0.000000000000000000000000000000000000000000000000007818 181.0
YYD3_k127_5589209_3 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000008865 102.0
YYD3_k127_5589209_4 lysine biosynthesis protein LysW K05826 - - 0.0000000000000000000004834 96.0
YYD3_k127_5595931_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006911 566.0
YYD3_k127_5595931_1 Belongs to the UPF0218 family K09735 - - 0.000000000000000000000000000000000003414 143.0
YYD3_k127_5595931_2 - - - - 0.000000000000000000000000000007873 120.0
YYD3_k127_5595931_4 - - - - 0.0000000000003753 70.0
YYD3_k127_5620743_0 Belongs to the MenA family. Type 1 subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002383 216.0
YYD3_k127_5620743_1 Methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000002337 189.0
YYD3_k127_5622156_0 uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000001834 216.0
YYD3_k127_5622156_1 Reverse transcriptase-like K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000002703 171.0
YYD3_k127_5630030_0 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02322 - 2.7.7.7 5.319e-211 666.0
YYD3_k127_5630030_1 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids K17104 - 2.5.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001922 270.0
YYD3_k127_5633031_0 Protein of unknown function (DUF763) K09003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 444.0
YYD3_k127_5633031_1 D-isomer specific 2-hydroxyacid dehydrogenase K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 321.0
YYD3_k127_5636777_0 UV-endonuclease UvdE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004277 325.0
YYD3_k127_5637725_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis K04479 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 436.0
YYD3_k127_5670600_0 magnesium chelatase K03405 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 594.0
YYD3_k127_5670600_1 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000000000000004251 228.0
YYD3_k127_5670600_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000006854 214.0
YYD3_k127_5670600_3 PFAM S-layer - - - 0.000004785 48.0
YYD3_k127_5686638_0 Radical SAM K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006401 376.0
YYD3_k127_5686638_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 321.0
YYD3_k127_5686638_2 - - - - 0.0000000000000000000005424 98.0
YYD3_k127_5700447_0 - - - - 0.00000000000000000002652 96.0
YYD3_k127_5742100_0 COG0433 Predicted ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000008158 243.0
YYD3_k127_5757501_0 MiaB-like tRNA modifying enzyme K15865 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 475.0
YYD3_k127_5757501_1 - - - - 0.00000000000001608 74.0
YYD3_k127_5761696_0 Belongs to the arginase family K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 356.0
YYD3_k127_5761696_1 DNA polymerase K02319 - 2.7.7.7 0.000000000000000000000000000000000000001467 149.0
YYD3_k127_5763099_0 Peptidase family M23 - - - 0.0000000000000000000006756 101.0
YYD3_k127_5763099_1 4-hydroxybenzoate synthetase (chorismate lyase) K03181,K06984 - 2.4.2.54,4.1.3.40 0.000000000000001341 83.0
YYD3_k127_5764648_0 Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2- amino-3,7-dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids K16306 - 2.2.1.10,4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005888 395.0
YYD3_k127_5764648_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.000000000000000000000000000000000000000000000000000001445 198.0
YYD3_k127_5786971_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000005579 222.0
YYD3_k127_5786971_1 response regulator, receiver - - - 0.00000000000000000000002578 104.0
YYD3_k127_5786971_2 amine dehydrogenase activity - - - 0.0000000000000001119 84.0
YYD3_k127_5787_0 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 391.0
YYD3_k127_5787_1 - - - - 0.00000003801 58.0
YYD3_k127_5788242_0 UbiA prenyltransferase K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004586 317.0
YYD3_k127_5788242_1 Protein of unknown function (DUF763) K09003 - - 0.00000000000002372 74.0
YYD3_k127_5788242_2 DEAD/H associated K03724 - - 0.0000000001173 63.0
YYD3_k127_5800470_0 Arsenical pump membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007565 288.0
YYD3_k127_5816754_0 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007273 278.0
YYD3_k127_5816754_2 ABC-2 type transporter K09690 - - 0.000000002332 61.0
YYD3_k127_5819217_0 PFAM tRNA synthetase, class II (D, K and N) K01893 - 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 392.0
YYD3_k127_5819217_1 Transcriptional regulator - - - 0.00000000000335 67.0
YYD3_k127_5819511_0 DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks K03726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 524.0
YYD3_k127_5819511_1 glycosyl transferase family K01001 - 2.7.8.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 431.0
YYD3_k127_5826807_0 DnaJ central domain K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000166 230.0
YYD3_k127_5826807_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000587 218.0
YYD3_k127_5826807_2 PQ loop repeat - - - 0.00000000001761 68.0
YYD3_k127_5828869_0 PFAM Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000731 481.0
YYD3_k127_5828869_1 Transcriptional regulator - - - 0.000003721 52.0
YYD3_k127_5841214_0 Belongs to the MCM family K10726 - - 0.0 1059.0
YYD3_k127_5841214_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009542 506.0
YYD3_k127_5841214_2 GINS complex protein K09723 - - 0.000000000000000000000000000000000000000000000000001187 186.0
YYD3_k127_5841214_3 Domain of unknown function (DUF1802) - - - 0.000000000000000001922 89.0
YYD3_k127_5850207_0 ribosomal protein K02866 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002863 272.0
YYD3_k127_5850207_1 tRNA intron endonuclease, N-terminal domain K01170 - 4.6.1.16 0.000000000000000000000000000000000000000001209 159.0
YYD3_k127_5851833_0 metal-binding integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 308.0
YYD3_k127_5851833_1 - - - - 0.0000000001735 70.0
YYD3_k127_585851_0 Methionine synthase K00548 - 2.1.1.13 0.0 1170.0
YYD3_k127_585851_1 homocysteine S-methyltransferase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000008242 153.0
YYD3_k127_5863497_0 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000519 356.0
YYD3_k127_5863497_2 Iron-containing redox enzyme K06137 - 1.3.3.11 0.00000000000000000000000000000000000000000000000000002484 196.0
YYD3_k127_5863497_3 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases K05710 - - 0.00000000000000000000000000001141 121.0
YYD3_k127_5888475_0 Protein of unknown function (DUF1326) - - - 0.0000000000000000000000000000000000001209 143.0
YYD3_k127_5898097_0 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 323.0
YYD3_k127_5903480_0 Sodium hydrogen exchanger K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002846 460.0
YYD3_k127_5903480_1 DNA-binding transcription factor activity - - - 0.0000000000000000000000000000000000000000000000001091 183.0
YYD3_k127_5918546_0 Universal stress protein - - - 0.000000000000000000000000000000000003542 142.0
YYD3_k127_5918546_1 signal transduction protein with CBS domains - - - 0.00000000000000359 81.0
YYD3_k127_5918546_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016491,GO:0016620,GO:0016903,GO:0019318,GO:0019319,GO:0036094,GO:0043891,GO:0044238,GO:0044281,GO:0044283,GO:0046364,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.2.1.12 0.00000000000001659 74.0
YYD3_k127_5919785_0 spore germination - - - 0.00002705 47.0
YYD3_k127_5919785_1 - - - - 0.0001035 53.0
YYD3_k127_5949595_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K09759 - 6.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 401.0
YYD3_k127_5983871_0 Belongs to the glutamate synthase family - - - 0.0000000000000000000000000000000000000000000059 172.0
YYD3_k127_5983871_1 Glutamine amidotransferase domain - - - 0.000000000000000000000000000000000000000000944 167.0
YYD3_k127_5984952_0 Succinyl-CoA ligase like flavodoxin domain K18594 - - 1.876e-234 733.0
YYD3_k127_5988965_0 Methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000009615 153.0
YYD3_k127_5995642_0 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 498.0
YYD3_k127_5995642_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000001065 232.0
YYD3_k127_5995642_2 - - - - 0.0000000000000000000000000000000000000000000000000008809 196.0
YYD3_k127_5995642_3 COG0589 Universal stress protein UspA and related nucleotide-binding proteins K20989 - - 0.00000000000000000000000000004981 121.0
YYD3_k127_5995642_4 Thiamine-binding protein - - - 0.00000000000000000001221 94.0
YYD3_k127_6006493_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006322 383.0
YYD3_k127_6006493_1 PFAM ABC-2 type transporter K01992 - - 0.0000000000000000000002113 98.0
YYD3_k127_6021049_0 NAD-dependent epimerase dehydratase K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 416.0
YYD3_k127_6021049_1 ErfK ybiS ycfS ynhG family protein - - - 0.0005997 43.0
YYD3_k127_6045258_0 May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity K06965 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 385.0
YYD3_k127_6045258_1 - - - - 0.00000000000000000000000000000000000000000000000001034 183.0
YYD3_k127_6045258_2 - - - - 0.00000000000000000000000000002254 119.0
YYD3_k127_6054313_0 FAD linked - - - 0.000000000000000000000000000000000000000000000000000000000000000000001823 243.0
YYD3_k127_6054313_1 - - - - 0.00000000000000000000000000000000007211 143.0
YYD3_k127_6058295_0 ATP synthase subunit C K02124 - - 0.000000000000000000000000004073 113.0
YYD3_k127_6058295_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.00005796 52.0
YYD3_k127_6078939_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007532 486.0
YYD3_k127_6078939_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000001516 164.0
YYD3_k127_6083504_0 exonuclease of the beta-lactamase fold involved in RNA processing K07577 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 457.0
YYD3_k127_6083504_1 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000002736 251.0
YYD3_k127_6087330_0 Ferritin-like domain K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 376.0
YYD3_k127_6087330_1 DHHA1 domain K07463 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 362.0
YYD3_k127_6087330_2 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 0.00000000000000000000000000000000000000000000000000000000000000002178 234.0
YYD3_k127_6087330_4 Belongs to the carbohydrate kinase PfkB family K00852 - 2.7.1.15 0.00000000000000000000000000002276 123.0
YYD3_k127_6087330_5 Belongs to the P(II) protein family K04751 - - 0.0000000002297 66.0
YYD3_k127_6088050_0 DNA polymerase elongation subunit (Family B) K02319 - 2.7.7.7 2.857e-213 686.0
YYD3_k127_6088050_1 - - - - 0.00000000000000005312 83.0
YYD3_k127_6088050_2 - - - - 0.000008581 51.0
YYD3_k127_6091848_0 RNA methylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002395 243.0
YYD3_k127_6091848_1 decarboxylase K01607 - 4.1.1.44 0.00000000000000000000000000000000000006111 145.0
YYD3_k127_6091848_2 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 0.0000000000000000000000003721 106.0
YYD3_k127_6124443_0 Belongs to the LDH MDH superfamily K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 469.0
YYD3_k127_6124443_1 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 417.0
YYD3_k127_6124443_2 tRNA methyl transferase K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004297 293.0
YYD3_k127_6124443_3 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000001346 196.0
YYD3_k127_6124443_4 AIR carboxylase K06898 - - 0.0000000000000000000000000000002482 128.0
YYD3_k127_6126959_0 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000309 143.0
YYD3_k127_6126959_1 B12 binding domain - - - 0.000000000003264 72.0
YYD3_k127_6133545_1 - - - - 0.0000007315 59.0
YYD3_k127_6133701_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 378.0
YYD3_k127_6133701_1 magnesium chelatase K03405 - 6.6.1.1 0.000000000000000000000000000008137 125.0
YYD3_k127_6151543_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000006542 98.0
YYD3_k127_6151543_1 Protein of unknown function, DUF488 - - - 0.0000001062 57.0
YYD3_k127_6151543_2 Pentapeptide repeats (9 copies) - - - 0.0004933 52.0
YYD3_k127_6154190_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 3.771e-243 760.0
YYD3_k127_6165126_0 Nucleotidyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 320.0
YYD3_k127_6165126_1 Belongs to the eukaryotic ribosomal protein eS4 family K02987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003315 253.0
YYD3_k127_6165126_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008992 241.0
YYD3_k127_6165126_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000238 230.0
YYD3_k127_6165126_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000001188 229.0
YYD3_k127_6165126_5 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000001042 153.0
YYD3_k127_6165126_6 ribosomal protein S14 K02954 - - 0.0000000000000000000000000008037 112.0
YYD3_k127_6170504_0 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 297.0
YYD3_k127_6170504_1 PFAM regulatory protein TetR K03577,K18939 - - 0.000000000000006469 79.0
YYD3_k127_6176672_0 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate K07558 - 2.7.7.72 0.000000000000000000000000000000000000000000002063 175.0
YYD3_k127_6176672_1 Ser thr protein kinase K07176 - - 0.0000000000000000000000000000000000000000004881 166.0
YYD3_k127_6184667_0 resistance protein K14166 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007578 456.0
YYD3_k127_6184667_1 - - - - 0.0000000000009626 76.0
YYD3_k127_6188785_0 calcium- and calmodulin-responsive adenylate cyclase activity K01406 - 3.4.24.40 0.0000000006496 68.0
YYD3_k127_6188785_1 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.000000001287 59.0
YYD3_k127_6188785_2 DEAD DEAH box helicase K05592 - 3.6.4.13 0.00000008048 57.0
YYD3_k127_6193519_0 cation diffusion facilitator family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 334.0
YYD3_k127_6210071_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006056 458.0
YYD3_k127_6212666_0 - - - - 0.0000000000000000000000000000000000000000000001043 175.0
YYD3_k127_6212666_1 DsrE/DsrF-like family - - - 0.0000000003156 66.0
YYD3_k127_6218602_0 cation diffusion facilitator family transporter K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 327.0
YYD3_k127_622080_0 COG1653 ABC-type sugar transport system, periplasmic component K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000687 450.0
YYD3_k127_622080_1 PFAM ABC transporter related K10112 - - 0.0000000000000000000000000000000000000000000000000000003687 198.0
YYD3_k127_6225510_0 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 394.0
YYD3_k127_6225510_1 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000003769 89.0
YYD3_k127_6232806_1 FAD dependent oxidoreductase - - - 0.00000004247 56.0
YYD3_k127_6232806_2 FAD dependent oxidoreductase - - - 0.0000004463 52.0
YYD3_k127_6238845_0 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000002047 254.0
YYD3_k127_6238845_1 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000376 160.0
YYD3_k127_6270093_0 geranylgeranyl reductase K17830 - 1.3.1.101,1.3.7.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000995 520.0
YYD3_k127_6270093_1 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 3 K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000003795 212.0
YYD3_k127_6270093_2 Belongs to the complex I 20 kDa subunit family K00331 - 1.6.5.3 0.0000000000000457 72.0
YYD3_k127_6305435_0 zinc metalloprotease whose natural substrate is K06974 GO:0003674,GO:0003824,GO:0005488,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008270,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0071704,GO:0140096,GO:1901564 - 0.00000000000000000000000000000004593 131.0
YYD3_k127_6340793_0 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.000000000000000008936 87.0
YYD3_k127_6350480_0 ABC-type antimicrobial peptide transport system, ATPase component K02003,K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007772 305.0
YYD3_k127_6350480_1 extracellular matrix structural constituent - - - 0.000000000000000000000001899 112.0
YYD3_k127_6350480_2 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000007381 94.0
YYD3_k127_6373205_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.00000000000000000000001114 104.0
YYD3_k127_6373205_1 UbiA prenyltransferase family K03179 - 2.5.1.39 0.000000000000000000000426 107.0
YYD3_k127_6409901_0 Anticodon-binding domain of tRNA K01873 - 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 599.0
YYD3_k127_6409901_1 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000006158 260.0
YYD3_k127_6410762_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 2.199e-197 619.0
YYD3_k127_6410762_1 Initiation factor K03242 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005312 459.0
YYD3_k127_6410762_2 - - - - 0.000000000000001066 78.0
YYD3_k127_6429638_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000001209 222.0
YYD3_k127_6429638_1 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000558 50.0
YYD3_k127_6471808_0 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005733 420.0
YYD3_k127_6471808_1 oxidoreductase FAD NAD(P)-binding K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 370.0
YYD3_k127_6471808_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000002023 175.0
YYD3_k127_6484939_0 Heat shock 70 kDa protein K04043 - - 5.338e-314 971.0
YYD3_k127_6484939_1 DnaJ central domain K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007481 264.0
YYD3_k127_6484939_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000003952 166.0
YYD3_k127_6495009_0 RIO-like serine threonine protein kinase fused to N-terminal HTH domain K07179 - 2.7.11.1 0.00000000000000000000000000000000000000000001077 173.0
YYD3_k127_6495009_1 - - - - 0.00000000000000000000000002343 113.0
YYD3_k127_6499094_0 DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks K03726 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000596 451.0
YYD3_k127_6514185_0 FAD dependent oxidoreductase K15736 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 346.0
YYD3_k127_6514185_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000002772 130.0
YYD3_k127_6528909_0 Urease, alpha subunit K01428 - 3.5.1.5 1.073e-243 756.0
YYD3_k127_6528909_2 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004359 340.0
YYD3_k127_6528909_3 Belongs to the urease beta subunit family K01429,K14048 - 3.5.1.5 0.00000000000000000000000000000000000000000000000000000001937 199.0
YYD3_k127_6528909_4 (urease) gamma subunit K01430,K14048 - 3.5.1.5 0.0000000000000000000000000000000000000000000000004448 176.0
YYD3_k127_6528909_6 ABC transporter K09817 - - 0.00000000000000000000001256 104.0
YYD3_k127_6528909_7 GAD domain K01876 - 6.1.1.12 0.0000000000000000357 82.0
YYD3_k127_6535902_0 Formyl transferase K01433 - 3.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 419.0
YYD3_k127_6535902_1 Belongs to the phosphohexose mutase family K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 391.0
YYD3_k127_6535902_2 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000008242 229.0
YYD3_k127_6535902_3 snRNP Sm proteins K04796 - - 0.0000000000000000000000000000000009691 130.0
YYD3_k127_6535902_4 Binds to the 23S rRNA K02922 - - 0.0000000000000000000000002714 105.0
YYD3_k127_6535902_5 - - - - 0.000000006354 68.0
YYD3_k127_6535902_6 - - - - 0.0000004005 51.0
YYD3_k127_6541120_0 COG3316 Transposase and inactivated derivatives K07498 - - 0.00000000000000003465 89.0
YYD3_k127_6548359_0 Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules K04483 GO:0000150,GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0033554,GO:0034622,GO:0034641,GO:0042148,GO:0042623,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0045003,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 509.0
YYD3_k127_6548359_1 - - - - 0.0000000000000000134 84.0
YYD3_k127_6581386_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009047 368.0
YYD3_k127_6581386_1 Transcriptional regulator - - - 0.000000000000000000000000000003027 128.0
YYD3_k127_6581386_2 - - - - 0.000000000000000000000004433 103.0
YYD3_k127_6604811_1 Transcriptional regulatory protein, C terminal K14981 - - 0.000002439 51.0
YYD3_k127_6607729_0 Zinc finger, C2H2 type - - - 0.000000000000001316 78.0
YYD3_k127_6629182_0 Galactose oxidase, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 308.0
YYD3_k127_6629182_1 Chromate resistance - - - 0.000000000000000000000000000002122 120.0
YYD3_k127_6641843_0 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000006742 179.0
YYD3_k127_6641843_1 PFAM GvpD gas vesicle - - - 0.00000000000000000000000000003628 133.0
YYD3_k127_6641843_2 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000006772 127.0
YYD3_k127_6641843_3 Transcriptional regulator - - - 0.000000000006282 67.0
YYD3_k127_6641843_4 - - - - 0.00000000002138 69.0
YYD3_k127_6648885_0 Phage integrase SAM-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 378.0
YYD3_k127_6648885_2 - - - - 0.0000000005154 62.0
YYD3_k127_6653344_0 Fibronectin-binding protein A N-terminus (FbpA) - - - 3.597e-207 663.0
YYD3_k127_6653344_1 CBS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001956 273.0
YYD3_k127_6653344_2 Catalyzes the methylation of C-15 in cobalt-precorrin-6B followed by the decarboxylation of C-12 to form cobalt-precorrin- 7 K02191 - 2.1.1.196 0.0000000000000000000000000000000000000000000000000000000000000000000003465 242.0
YYD3_k127_6653344_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.000000000000000000000000000000000000000000000007177 178.0
YYD3_k127_6653344_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 0.000000000000000000000000000000000000000000002382 165.0
YYD3_k127_6653344_5 - - - - 0.000000000000001984 80.0
YYD3_k127_6653344_6 Tetrapyrrole (Corrin/Porphyrin) Methylases K03394 - 2.1.1.130,2.1.1.151 0.000000004514 57.0
YYD3_k127_6662285_0 ATP phosphoribosyltransferase K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 504.0
YYD3_k127_6662285_1 Belongs to the HMG-CoA reductase family K00054 - 1.1.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 477.0
YYD3_k127_6662285_2 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 467.0
YYD3_k127_6662285_3 Glucose sorbosone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 465.0
YYD3_k127_6662285_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004705 402.0
YYD3_k127_6662285_5 PFAM Aminotransferase class I and II K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 303.0
YYD3_k127_6668322_0 aspartate ornithine carbamoyltransferase carbamoyl-P binding domain K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008008 429.0
YYD3_k127_6668322_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004412 409.0
YYD3_k127_6668322_2 Cell division protein 48 (CDC48), domain 2 K13525 - - 0.000000000000649 68.0
YYD3_k127_6677653_0 Binds the lower part of the 30S subunit head K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 305.0
YYD3_k127_6677653_1 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002404 246.0
YYD3_k127_6677653_2 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000000000000000000000000238 228.0
YYD3_k127_6677653_3 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000831 223.0
YYD3_k127_6677653_4 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000000000000000000001944 157.0
YYD3_k127_6677653_5 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000000007198 88.0
YYD3_k127_6677653_6 Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome K02892 - - 0.0000000000001084 72.0
YYD3_k127_6677653_7 Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends K03538 GO:0000172,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030677,GO:0032991,GO:0033204,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1902555,GO:1905348,GO:1990904 3.1.26.5 0.0000000005059 63.0
YYD3_k127_669294_0 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006212 237.0
YYD3_k127_669294_1 thymidylate kinase K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000002744 222.0
YYD3_k127_669294_2 - - - - 0.000000000000000000000000000000000000000002699 159.0
YYD3_k127_672470_0 COG1522 Transcriptional regulators - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007002 454.0
YYD3_k127_672470_1 Alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 424.0
YYD3_k127_6730533_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.1.1.205 0.0000005703 61.0
YYD3_k127_6747529_0 ABC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 341.0
YYD3_k127_6747529_1 ABC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001346 271.0
YYD3_k127_6750096_0 HELICc2 - - - 6.841e-214 680.0
YYD3_k127_6750096_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis K04479 - 2.7.7.7 0.00000000000000000000000000000000000003596 151.0
YYD3_k127_6750096_2 Glycosyl transferase family 41 K09667 GO:0000003,GO:0000123,GO:0000785,GO:0000791,GO:0001678,GO:0001932,GO:0001933,GO:0001934,GO:0002119,GO:0002164,GO:0002237,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0006040,GO:0006041,GO:0006047,GO:0006048,GO:0006073,GO:0006091,GO:0006109,GO:0006110,GO:0006111,GO:0006112,GO:0006139,GO:0006140,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006473,GO:0006475,GO:0006479,GO:0006486,GO:0006493,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0008194,GO:0008213,GO:0008219,GO:0008289,GO:0008361,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010646,GO:0010675,GO:0010799,GO:0010801,GO:0010876,GO:0010906,GO:0010941,GO:0012501,GO:0012505,GO:0015980,GO:0016020,GO:0016043,GO:0016262,GO:0016311,GO:0016407,GO:0016410,GO:0016485,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016579,GO:0016740,GO:0016746,GO:0016747,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019904,GO:0019915,GO:0022607,GO:0023051,GO:0023052,GO:0030141,GO:0030162,GO:0030246,GO:0030808,GO:0030811,GO:0030900,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032386,GO:0032387,GO:0032434,GO:0032435,GO:0032496,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032922,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033135,GO:0033137,GO:0033157,GO:0033218,GO:0033500,GO:0033993,GO:0034284,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035020,GO:0035091,GO:0035220,GO:0035295,GO:0035556,GO:0036094,GO:0036211,GO:0036477,GO:0040024,GO:0042176,GO:0042177,GO:0042221,GO:0042277,GO:0042325,GO:0042326,GO:0042327,GO:0042578,GO:0042588,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043413,GO:0043414,GO:0043434,GO:0043467,GO:0043470,GO:0043543,GO:0043933,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045475,GO:0045793,GO:0045861,GO:0045862,GO:0045893,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046349,GO:0046483,GO:0046578,GO:0046626,GO:0048015,GO:0048017,GO:0048029,GO:0048311,GO:0048312,GO:0048471,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051056,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051223,GO:0051224,GO:0051235,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051568,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051704,GO:0051707,GO:0051716,GO:0055082,GO:0055086,GO:0055114,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060548,GO:0061085,GO:0061087,GO:0061136,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070201,GO:0070206,GO:0070207,GO:0070208,GO:0070646,GO:0070647,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071396,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090066,GO:0090087,GO:0090313,GO:0090315,GO:0090317,GO:0097237,GO:0097363,GO:0097458,GO:0097708,GO:0099503,GO:0120025,GO:0140096,GO:1900037,GO:1900038,GO:1900076,GO:1900180,GO:1900182,GO:1900371,GO:1900542,GO:1901071,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901799,GO:1901981,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903426,GO:1903428,GO:1903506,GO:1903508,GO:1903533,GO:1903578,GO:1903827,GO:1903828,GO:1903829,GO:1904950,GO:1905269,GO:1905475,GO:1905476,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000377,GO:2000379,GO:2001141,GO:2001169,GO:2001252 2.4.1.255 0.000000007808 61.0
YYD3_k127_6766421_0 Hydroxymethylglutaryl-coenzyme A synthase N terminal K01641 - 2.3.3.10 5.824e-205 642.0
YYD3_k127_6766421_1 Heavy metal transport detoxification protein K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 603.0
YYD3_k127_6766421_10 Dioxygenase - - - 0.000000001277 61.0
YYD3_k127_6766421_11 - - - - 0.0000009266 59.0
YYD3_k127_6766421_12 catechol 1,2-dioxygenase - - - 0.0002031 44.0
YYD3_k127_6766421_2 Archaeal TRASH domain - - - 0.0000000000000000000000000000000000000007471 153.0
YYD3_k127_6766421_3 Copper resistance protein D - - - 0.0000000000000000000000000000000000000628 147.0
YYD3_k127_6766421_5 - - - - 0.00000000000000000000000007722 113.0
YYD3_k127_6766421_6 - - - - 0.000000000000000000000001242 113.0
YYD3_k127_6766421_7 COG1522 Transcriptional regulators - - - 0.00000000000000000000002233 104.0
YYD3_k127_6786750_0 ABC-type transport system, involved in lipoprotein release, permease component K02004 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 437.0
YYD3_k127_6786750_1 extracellular matrix structural constituent - - - 0.00000000000001242 79.0
YYD3_k127_6795112_0 Trypsin-like serine protease with C-terminal PDZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 299.0
YYD3_k127_6795112_1 glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000004576 218.0
YYD3_k127_6795112_2 iron dependent repressor - - - 0.000000000000000000000000000000000000000000000000002889 186.0
YYD3_k127_6795112_3 - - - - 0.00000000000000000000000000000000000001638 149.0
YYD3_k127_6795112_4 divalent heavy-metal cations transporter - - - 0.000000000000002083 79.0
YYD3_k127_6802747_0 PFAM TCP-1 cpn60 chaperonin family K22447 - - 5.377e-282 874.0
YYD3_k127_6802747_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K03330 - 6.3.5.7 5.24e-203 643.0
YYD3_k127_6802747_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K09482 - 6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 459.0
YYD3_k127_6802747_3 Cytidylyltransferase-like K00952 - 2.7.7.1 0.000000000000000000000000000000000000000000000000001033 188.0
YYD3_k127_6802747_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000005198 60.0
YYD3_k127_6803720_0 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 332.0
YYD3_k127_6818801_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 4.859e-250 781.0
YYD3_k127_6818801_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.476e-203 643.0
YYD3_k127_6820256_0 PAC2 family K06869 - - 0.000000000000000000000000000000000000000000000000000000000000000002911 234.0
YYD3_k127_6829323_0 Oxidoreductase family, NAD-binding Rossmann fold K18855 - 1.1.1.374 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009175 276.0
YYD3_k127_6829323_1 Trm112p-like protein - - - 0.000000000000000000000005111 106.0
YYD3_k127_6829323_2 Oxidoreductase domain protein K18855 - 1.1.1.374 0.00000000000000000006315 94.0
YYD3_k127_6829323_3 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000005312 83.0
YYD3_k127_6841208_0 - - - - 0.000000000000001666 79.0
YYD3_k127_6841208_1 Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) K03124 - - 0.00000000021 63.0
YYD3_k127_6841208_2 PFAM GvpD gas vesicle - - - 0.000005551 58.0
YYD3_k127_6841208_3 Transcriptional regulator - - - 0.0000184 51.0
YYD3_k127_6848470_0 - - - - 0.00000000000001914 79.0
YYD3_k127_6858139_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 6.773e-253 794.0
YYD3_k127_6858139_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 493.0
YYD3_k127_6865217_0 Trypsin-like serine protease with C-terminal PDZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002149 261.0
YYD3_k127_6865217_1 PDZ domain (Also known as DHR or GLGF) - - - 0.000003652 51.0
YYD3_k127_6866536_0 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 303.0
YYD3_k127_6866536_1 Asp/Glu/Hydantoin racemase K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000006403 206.0
YYD3_k127_6866536_2 Acetyltransferase (GNAT) domain K00621 - 2.3.1.4 0.00000000000000000000000000005618 121.0
YYD3_k127_6875340_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 5.446e-316 972.0
YYD3_k127_6875340_1 DeoC/LacD family aldolase K08321 - 2.3.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 325.0
YYD3_k127_687546_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004083 419.0
YYD3_k127_687546_1 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001311 235.0
YYD3_k127_687546_2 phospholipase Carboxylesterase K06999 - - 0.00000000000000000000008092 101.0
YYD3_k127_687546_3 response regulator, receiver - - - 0.00000000000000000007996 94.0
YYD3_k127_687546_4 Dienelactone hydrolase family K06999 - - 0.0000000002613 61.0
YYD3_k127_6883362_0 NurA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009211 364.0
YYD3_k127_6883362_1 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000003093 89.0
YYD3_k127_6887929_0 - - - - 0.000000000000000000000000000000004108 142.0
YYD3_k127_6888409_0 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000008047 221.0
YYD3_k127_719423_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 400.0
YYD3_k127_719423_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 286.0
YYD3_k127_719423_2 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000001377 255.0
YYD3_k127_719423_3 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000005961 252.0
YYD3_k127_719423_4 Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits K03236 - - 0.0000000000000000000000000000000000000000000147 163.0
YYD3_k127_719423_5 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000009116 96.0
YYD3_k127_724510_0 Fumarase C C-terminus K01744 - 4.3.1.1 5.82e-207 652.0
YYD3_k127_724510_1 Peptidase family M3 K08602 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 432.0
YYD3_k127_747049_0 UbiD family decarboxylase K03182 - 4.1.1.98 0.0000000000000000000000000000006041 124.0
YYD3_k127_747049_1 NUDIX domain - - - 0.0000000000000000000000000000006682 129.0
YYD3_k127_747049_2 cytochrome-c peroxidase activity - - - 0.000000000000006146 78.0
YYD3_k127_749645_1 Cupin domain - - - 0.0000000000000006976 79.0
YYD3_k127_753_0 - - - - 0.000000000000006484 80.0
YYD3_k127_758618_0 PFAM Glycosyl transferase family 2 K00752 - 2.4.1.212 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 303.0
YYD3_k127_758618_1 ABC 3 transport family K09816 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 290.0
YYD3_k127_758618_2 PFAM ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006391 276.0
YYD3_k127_758618_3 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000002117 196.0
YYD3_k127_758618_4 ATP-grasp domain - - - 0.000000000000000000000000000000000000004125 155.0
YYD3_k127_758618_5 - - - - 0.000000000000000000003702 93.0
YYD3_k127_758618_6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03059 - 2.7.7.6 0.00000000000000000000653 94.0
YYD3_k127_762522_0 PFAM Protein kinase domain - - - 0.000000007344 64.0
YYD3_k127_762522_1 CBS domain - - - 0.0000002729 63.0
YYD3_k127_762522_2 CBS domain containing protein - - - 0.0003054 53.0
YYD3_k127_770798_0 TIGRFAM precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 - 2.1.1.289 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 338.0
YYD3_k127_770798_1 - - - - 0.0000000000000000000000000000000000000000000000009549 176.0
YYD3_k127_770798_2 protein (ATP-grasp superfamily) K07159 - - 0.000000000000000000002944 94.0
YYD3_k127_770798_3 protein (ATP-grasp superfamily) K07159 - - 0.000000000000000004623 86.0
YYD3_k127_779501_0 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000002771 233.0
YYD3_k127_779501_2 Rieske 2Fe-2S K05710 - - 0.0000000000000000000000000000000000000000006031 159.0
YYD3_k127_779501_3 PFAM Ammonia monooxygenase methane monooxygenase, subunit C K10946 - - 0.000000000000000003115 83.0
YYD3_k127_779501_4 DUF167 K09131 - - 0.00000000004284 65.0
YYD3_k127_780645_0 MT-A70 - - - 0.000000000000000000000000000248 119.0
YYD3_k127_78198_0 Involved in regulation of DNA replication K10725 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 419.0
YYD3_k127_78198_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 397.0
YYD3_k127_78198_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006656 356.0
YYD3_k127_78198_3 Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA K14568 - 2.1.1.260 0.0000000000000959 74.0
YYD3_k127_782257_1 PFAM Integral membrane protein TerC K05794 - - 0.0000000000000000000000000000001525 128.0
YYD3_k127_783878_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family K00555 - 2.1.1.215,2.1.1.216 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449 386.0
YYD3_k127_783878_1 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 374.0
YYD3_k127_783878_2 Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA K04795 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 321.0
YYD3_k127_783878_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000003957 207.0
YYD3_k127_783878_4 cytochrome-c peroxidase activity - - - 0.000000000000000000000000000000000000000000000004114 178.0
YYD3_k127_808721_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 357.0
YYD3_k127_818554_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1354.0
YYD3_k127_818554_1 aspartate carbamoyltransferase K00609 - 2.1.3.2 0.00000000000000000000000003932 108.0
YYD3_k127_820909_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000004946 239.0
YYD3_k127_820909_1 Uncharacterised protein family UPF0052 K11212 - 2.7.8.28 0.000000000000202 70.0
YYD3_k127_824815_0 factor TFIIB K03124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005717 241.0
YYD3_k127_824815_1 segregation and condensation protein K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000002197 236.0
YYD3_k127_824815_2 chromosome segregation and condensation protein ScpA K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000009285 234.0
YYD3_k127_824815_3 Ribosomal protein S8e K02995 - - 0.000000000000000000000000000000000000001647 151.0
YYD3_k127_824815_4 SRP19 protein K03105 - - 0.0000000000000000000000000000009978 123.0
YYD3_k127_824815_5 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03014 - - 0.00000000000000000000000001371 116.0
YYD3_k127_824815_6 Cyclophilin-like K09143 - - 0.0000000000000000001135 94.0
YYD3_k127_824815_7 S25 ribosomal protein K02975 - - 0.000000000000001006 81.0
YYD3_k127_824815_8 RNA-binding protein involved in rRNA processing K07569 - - 0.0000000000001134 74.0
YYD3_k127_824815_9 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.000008409 48.0
YYD3_k127_825082_0 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 410.0
YYD3_k127_825082_1 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 - 6.5.1.4 0.000000000000000000000000000000000000000000000000000000003886 203.0
YYD3_k127_825082_2 Lrp/AsnC ligand binding domain - - - 0.000000000000000000000000000000000000007748 145.0
YYD3_k127_825082_3 - - - - 0.000000000000000000000005406 108.0
YYD3_k127_825082_4 - - - - 0.00000000000000000000002791 107.0
YYD3_k127_825082_5 Transcriptional regulator - - - 0.00000000006104 66.0
YYD3_k127_831622_0 glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000005641 266.0
YYD3_k127_858526_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 1.009e-220 689.0
YYD3_k127_858526_1 Isocitrate isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006934 535.0
YYD3_k127_858526_10 Reverse transcriptase-like - - - 0.000000000000004839 80.0
YYD3_k127_858526_2 small GTP-binding protein K06944 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 502.0
YYD3_k127_858526_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 378.0
YYD3_k127_858526_4 F420-0:Gamma-glutamyl ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 292.0
YYD3_k127_858526_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001976 228.0
YYD3_k127_858526_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000587 218.0
YYD3_k127_858526_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000002163 195.0
YYD3_k127_858526_8 Signal peptidase K13280 - 3.4.21.89 0.00000000000000000000000000000000000000000000000001198 185.0
YYD3_k127_858526_9 Methyltransferase small domain K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000004151 163.0
YYD3_k127_864002_0 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000001229 117.0
YYD3_k127_864002_1 Transcriptional regulator - - - 0.00000000001037 68.0
YYD3_k127_883968_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000006582 176.0
YYD3_k127_887762_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 503.0
YYD3_k127_887762_1 Involved in the catabolism of quinolinic acid (QA) K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000001256 269.0
YYD3_k127_887762_2 Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate K06989 - 1.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000001502 268.0
YYD3_k127_887762_3 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000004953 108.0
YYD3_k127_887762_4 Transcription elongation factor Spt4 K03050 - 2.7.7.6 0.0000000000000000000001453 97.0
YYD3_k127_887762_5 Ribosomal protein S30 K02983 - - 0.000000000000000000889 87.0
YYD3_k127_887762_6 endonuclease K00986 - 2.7.7.49 0.0000000000000001049 82.0
YYD3_k127_899091_0 phospholipase C K01114 - 3.1.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 452.0
YYD3_k127_899091_1 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.00000001249 57.0
YYD3_k127_900100_0 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 369.0
YYD3_k127_90082_0 TIGRFAM poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit K03821 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 525.0
YYD3_k127_90082_1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) - - - 0.00000000000000000000000000009277 122.0
YYD3_k127_923303_0 NADH dehydrogenase K00337 - 1.6.5.3 1.556e-208 654.0
YYD3_k127_923303_1 Belongs to the complex I 49 kDa subunit family K00333 - 1.6.5.3 0.0000000000000000000000000000000006965 130.0
YYD3_k127_923303_2 4Fe-4S binding domain K00338 - 1.6.5.3 0.00000000304 61.0
YYD3_k127_925736_0 beta-1,4-mannooligosaccharide phosphorylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002944 241.0
YYD3_k127_927804_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000007088 208.0
YYD3_k127_934687_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000002195 153.0
YYD3_k127_934687_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000002038 127.0
YYD3_k127_934687_2 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.000000000000000000000000000001427 124.0
YYD3_k127_935129_0 Amidohydrolase family K01464 - 3.5.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005612 527.0
YYD3_k127_935129_1 Multicopper oxidase K00368 - 1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006365 313.0
YYD3_k127_935129_2 PFAM blue (type 1) copper domain protein - - - 0.000000000000000001881 98.0
YYD3_k127_935129_3 Ribose 5-phosphate isomerase K01807 - 5.3.1.6 0.00000000000000001425 84.0
YYD3_k127_960406_0 PFAM (2R)-phospho-3-sulfolactate synthase ComA K08097 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 4.4.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005288 391.0
YYD3_k127_960406_1 ABC-type nitrate sulfonate bicarbonate transport system, permease component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 351.0
YYD3_k127_960406_2 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000005739 242.0
YYD3_k127_960406_3 Protein of unknown function (DUF541) K09807 - - 0.0000000000000000000000000000000000000000003554 167.0
YYD3_k127_960406_4 Arsenite-activated ATPase ArsA K01551,K13993 - 3.6.3.16 0.000000000000000000000000000001632 127.0
YYD3_k127_961775_0 PFAM zinc iron permease K07238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 339.0
YYD3_k127_961775_1 Biotin lipoyl attachment domain-containing protein K01960 - 6.4.1.1 0.000000000000000002432 91.0
YYD3_k127_96257_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 437.0
YYD3_k127_96257_1 - - - - 0.00000000000001501 79.0
YYD3_k127_96257_2 cheY-homologous receiver domain - - - 0.000007772 53.0
YYD3_k127_963496_0 - - - - 0.0000000000000004381 83.0
YYD3_k127_963496_1 DsrE/DsrF-like family - - - 0.0001894 49.0
YYD3_k127_973466_0 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 2.088e-222 698.0
YYD3_k127_973466_1 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 457.0
YYD3_k127_973466_2 - - - - 0.0000000000000000000000000000000001032 134.0
YYD3_k127_973466_3 - - - - 0.0000000000000000000000000689 112.0
YYD3_k127_973466_4 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00150 - 1.2.1.59 0.0000000000000002395 79.0
YYD3_k127_973466_5 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.000000000001664 72.0
YYD3_k127_981195_0 - - - - 0.00000000000000000000000000003528 119.0
YYD3_k127_981195_1 GYD domain - - - 0.00000000000000000001176 94.0
YYD3_k127_981195_2 - - - - 0.000000000000001907 80.0
YYD3_k127_981860_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000004406 70.0
YYD3_k127_991070_0 Radical SAM - - - 0.0 1056.0
YYD3_k127_991070_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 491.0
YYD3_k127_991070_2 tRNA intron endonuclease, N-terminal domain K01170 - 4.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001313 251.0
YYD3_k127_991070_3 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000008451 203.0
YYD3_k127_991070_4 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000002112 157.0
YYD3_k127_991070_5 Belongs to the eukaryotic ribosomal protein eL40 family K02927 - - 0.0000000000000000000001006 98.0
YYD3_k127_991070_6 ribosomal protein K02962 - - 0.000000000000004307 77.0
YYD3_k127_991070_7 Kinase binding protein CGI-121 - - - 0.000000000005866 69.0
YYD3_k127_991070_8 Kinase binding protein CGI-121 - - - 0.0000007266 57.0