Overview

ID MAG04651
Name YYD3_bin.22
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order CAIMUX01
Family VGJL01
Genus
Species
Assembly information
Completeness (%) 80.68
Contamination (%) 5.35
GC content (%) 68.0
N50 (bp) 5,634
Genome size (bp) 2,570,452

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2292

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1003725_0 mannose metabolic process K01191 - 3.2.1.24 4.041e-212 706.0
YYD3_k127_1003725_1 Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system K10441 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 448.0
YYD3_k127_1003725_2 Belongs to the binding-protein-dependent transport system permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006483 439.0
YYD3_k127_1003725_3 ABC-type sugar transport system periplasmic component K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003776 269.0
YYD3_k127_1003725_4 translation initiation factor activity K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000001638 228.0
YYD3_k127_1003725_5 Linear amide C-N hydrolases, choloylglycine hydrolase family K01442 - 3.5.1.24 0.0000000000000000000000000000000000000000000001374 184.0
YYD3_k127_1013783_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000004128 61.0
YYD3_k127_1023207_0 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 304.0
YYD3_k127_1023207_1 methyltransferase - - - 0.000000000000000000000000000000000000002222 153.0
YYD3_k127_1023207_2 PFAM penicillin-binding protein transpeptidase K05515 - 3.4.16.4 0.0000000000000000001198 92.0
YYD3_k127_1023207_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 GO:0000166,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.000000000008388 69.0
YYD3_k127_1027603_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000832 588.0
YYD3_k127_1027603_1 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007918 289.0
YYD3_k127_1027603_2 Propeptide_C25 - - - 0.0000000000000000000000000000000004624 154.0
YYD3_k127_1027603_3 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000001033 133.0
YYD3_k127_1027603_4 Protein of unknown function (DUF971) - - - 0.00000000000000000001285 98.0
YYD3_k127_1027603_5 SurA N-terminal domain K03770 - 5.2.1.8 0.00001224 58.0
YYD3_k127_1028060_0 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000001706 253.0
YYD3_k127_1028060_1 - - - - 0.000000000000000000000000000000000000000000000000002086 198.0
YYD3_k127_1028060_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000003892 146.0
YYD3_k127_1068782_0 PFAM carboxyl transferase K01615 - 4.1.1.70 7.907e-253 791.0
YYD3_k127_1068782_1 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 419.0
YYD3_k127_1068782_2 glycosyl hydrolase, BNR repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000003182 240.0
YYD3_k127_1068782_3 ligase activity, forming carbon-carbon bonds K00627,K00645,K02160 - 2.3.1.12,2.3.1.39 0.000000000000000002798 92.0
YYD3_k127_1070165_0 Rhomboid family - - - 0.00000000000000000000134 96.0
YYD3_k127_1070165_2 S53, subtilisin kexin sedolisin - - - 0.00003399 57.0
YYD3_k127_1074619_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 424.0
YYD3_k127_1074619_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 341.0
YYD3_k127_1074619_2 PFAM YicC-like family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000001659 241.0
YYD3_k127_1074619_3 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000424 213.0
YYD3_k127_1074619_4 guanylate kinase activity K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000000000000000000000001936 169.0
YYD3_k127_1081719_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 2.14e-227 724.0
YYD3_k127_1081719_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 357.0
YYD3_k127_1081719_10 Could be involved in septation K06412 - - 0.0000000000000000000000002989 109.0
YYD3_k127_1081719_11 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000007167 105.0
YYD3_k127_1081719_12 Receptor family ligand binding region K01999 - - 0.000000000000000000003445 96.0
YYD3_k127_1081719_13 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000002913 93.0
YYD3_k127_1081719_14 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000189 87.0
YYD3_k127_1081719_15 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000002618 90.0
YYD3_k127_1081719_16 Peptidylprolyl isomerase K01802,K03769 - 5.2.1.8 0.0000000001983 73.0
YYD3_k127_1081719_17 protein trimerization K02453 - - 0.000002021 60.0
YYD3_k127_1081719_18 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00001414 56.0
YYD3_k127_1081719_2 PFAM UbiA prenyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004975 268.0
YYD3_k127_1081719_3 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000001276 211.0
YYD3_k127_1081719_4 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919,K16924 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000000000001694 212.0
YYD3_k127_1081719_5 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000001249 198.0
YYD3_k127_1081719_6 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000004704 162.0
YYD3_k127_1081719_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000009022 154.0
YYD3_k127_1081719_8 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000002249 146.0
YYD3_k127_1081719_9 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000009945 144.0
YYD3_k127_1109083_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000002415 229.0
YYD3_k127_1109083_1 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 0.00000000000000000000000000000000000000000000000005463 181.0
YYD3_k127_1109083_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000001951 193.0
YYD3_k127_1109083_3 Arginase family K01480 - 3.5.3.11 0.00000000000000000146 89.0
YYD3_k127_1109083_4 3D domain protein - - - 0.0000000000003049 79.0
YYD3_k127_1109083_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000007407 82.0
YYD3_k127_1109083_6 Tetratricopeptide repeat - - - 0.0000126 58.0
YYD3_k127_1131989_0 smart pdz dhr glgf K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004349 409.0
YYD3_k127_1131989_1 nitric oxide dioxygenase activity K00523 - 1.17.1.1 0.000000000000000000000000000000005246 142.0
YYD3_k127_1131989_2 mutator MutT protein K03574,K03575 - 3.6.1.55 0.00000000000000000000000001007 115.0
YYD3_k127_1161763_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 1.517e-236 754.0
YYD3_k127_11646_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 4.542e-232 726.0
YYD3_k127_11646_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 5.775e-227 714.0
YYD3_k127_11646_2 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000000002173 254.0
YYD3_k127_11646_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000001144 243.0
YYD3_k127_11646_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000068 115.0
YYD3_k127_11646_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000001827 99.0
YYD3_k127_11646_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000721 102.0
YYD3_k127_11646_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000001296 87.0
YYD3_k127_11646_8 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0000006085 55.0
YYD3_k127_1167360_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771,K04772 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000703 286.0
YYD3_k127_1167360_1 UDP-2,3-diacylglucosamine hydrolase K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000003611 184.0
YYD3_k127_1167360_2 PFAM peptidase - - - 0.0000000000000000000000000000000000000000001712 171.0
YYD3_k127_1167360_3 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000003777 120.0
YYD3_k127_1167360_4 long-chain fatty acid transport protein - - - 0.000000000000000000000000004589 123.0
YYD3_k127_1167360_5 cellulase activity K06882 - - 0.0000000000000001511 83.0
YYD3_k127_1167360_6 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000001431 70.0
YYD3_k127_1170822_0 pfam abc K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 329.0
YYD3_k127_1170822_1 ABC-2 family transporter protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002207 275.0
YYD3_k127_1170822_2 Protein of unknown function (DUF933) K06942 - - 0.00000000000000000000000000000000000000000000000000000000001263 222.0
YYD3_k127_1170822_3 protein secretion K20276 - - 0.00000000000000001083 87.0
YYD3_k127_1170822_4 Tetratricopeptide TPR_2 repeat protein - - - 0.0002045 54.0
YYD3_k127_1174636_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 3.083e-300 933.0
YYD3_k127_1174636_1 Aconitase family (aconitate hydratase) - - - 1.65e-280 873.0
YYD3_k127_1194114_0 TPR repeat - - - 0.0000000002129 75.0
YYD3_k127_1194114_1 Tetratricopeptide TPR_2 repeat protein - - - 0.0002903 52.0
YYD3_k127_1194114_2 'TIGRFAM RNA polymerase sigma factor, sigma-70 family' K03088 - - 0.00061 51.0
YYD3_k127_1198395_0 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000000000000008761 211.0
YYD3_k127_1198395_1 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000009389 149.0
YYD3_k127_1198395_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000005226 92.0
YYD3_k127_1198395_3 Putative zinc ribbon domain - - - 0.00000000000008541 86.0
YYD3_k127_1201563_0 Subtilase family K13276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 347.0
YYD3_k127_1201563_1 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.0000000000000000000000000000000000000000000000000000003101 196.0
YYD3_k127_1201563_2 Calcineurin-like phosphoesterase K14379 - 3.1.3.2 0.0000000000000000003015 91.0
YYD3_k127_1201563_3 cellulose binding - - - 0.0000000000203 77.0
YYD3_k127_1206439_0 Domains REC, sigma54 interaction, HTH8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 384.0
YYD3_k127_1206439_1 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000004725 135.0
YYD3_k127_1206439_2 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000007413 90.0
YYD3_k127_1207268_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000003095 242.0
YYD3_k127_1207268_1 biopolymer transport protein K03559 - - 0.000000000000000000000000000001245 126.0
YYD3_k127_1207268_2 biopolymer transport protein - - - 0.0000000000000000000000000001668 119.0
YYD3_k127_1207268_3 PEP-CTERM system TPR-repeat lipoprotein - - - 0.0000000000000000001185 104.0
YYD3_k127_1207268_4 STAS domain - - - 0.000000000000000001413 90.0
YYD3_k127_1207268_5 Belongs to the peptidase S8 family - - - 0.00000000000000001768 88.0
YYD3_k127_1207268_6 PBP superfamily domain K02040 - - 0.0000000007164 70.0
YYD3_k127_1207268_7 BNR repeat-like domain - - - 0.00000001294 64.0
YYD3_k127_1211018_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009975 412.0
YYD3_k127_1211018_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000003381 173.0
YYD3_k127_1211018_2 PFAM Radical SAM K06871 - - 0.000000000000003327 83.0
YYD3_k127_1218011_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007427 588.0
YYD3_k127_1218011_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 445.0
YYD3_k127_1218011_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 377.0
YYD3_k127_1218011_3 OsmC-like protein K04063 - - 0.000000000000000000000000000000000000000000000000000001577 197.0
YYD3_k127_1263067_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 7.794e-207 654.0
YYD3_k127_1263067_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001048 247.0
YYD3_k127_1263067_2 Lipid A biosynthesis K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000004342 175.0
YYD3_k127_1263067_3 DNA protecting protein DprA K04096 - - 0.00000000000000000000001395 105.0
YYD3_k127_1266029_0 glycyl-radical enzyme activating activity K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 480.0
YYD3_k127_1266029_1 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006895 368.0
YYD3_k127_1266029_2 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001142 261.0
YYD3_k127_1266029_3 COG1002 Type II restriction enzyme, methylase subunits - - - 0.0000000000000000000000000000000000000000001124 184.0
YYD3_k127_1266029_4 SpoU rRNA Methylase family K00556 - 2.1.1.34 0.0000000000000000000594 105.0
YYD3_k127_1266029_5 N-6 DNA Methylase - - - 0.00006251 57.0
YYD3_k127_1266029_6 LVIVD repeat-containing protein - - - 0.0003477 54.0
YYD3_k127_1266029_7 TIGRFAM outer membrane autotransporter barrel domain - - - 0.0004171 51.0
YYD3_k127_1272260_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.274e-206 649.0
YYD3_k127_1272260_1 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000001901 243.0
YYD3_k127_1272260_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000004276 106.0
YYD3_k127_1272260_3 Polymer-forming cytoskeletal - - - 0.0000000001388 70.0
YYD3_k127_1276437_0 PglZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 531.0
YYD3_k127_1276437_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 496.0
YYD3_k127_1276437_2 Integral membrane sensor signal transduction histidine kinase K07709,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 316.0
YYD3_k127_1276437_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004114 312.0
YYD3_k127_1276437_4 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000000689 121.0
YYD3_k127_1276437_5 PFAM Peptidase M22, glycoprotease K14742 - - 0.0000000000000000000000001894 119.0
YYD3_k127_1276437_6 Belongs to the folylpolyglutamate synthase family K11754 GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.12,6.3.2.17 0.0000000000000000000000007118 118.0
YYD3_k127_1276437_7 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000185 120.0
YYD3_k127_1276643_0 protein conserved in bacteria K09859 - - 0.0000003478 55.0
YYD3_k127_1280515_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 7.392e-195 627.0
YYD3_k127_1280515_1 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 578.0
YYD3_k127_1280515_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 383.0
YYD3_k127_1280515_3 subfamily IA, variant 1 K08723 - 3.1.3.5 0.00000000000000000000000006047 118.0
YYD3_k127_1280515_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000172 68.0
YYD3_k127_1280515_5 Kelch motif - - - 0.00001888 56.0
YYD3_k127_12845_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1219.0
YYD3_k127_12845_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006652 389.0
YYD3_k127_12845_2 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 312.0
YYD3_k127_12845_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 306.0
YYD3_k127_12845_4 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000003932 177.0
YYD3_k127_12845_5 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000142 115.0
YYD3_k127_12845_6 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000001154 86.0
YYD3_k127_1285266_0 Lipase (class 3) K01046 - 3.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000141 229.0
YYD3_k127_1293318_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 412.0
YYD3_k127_1293318_1 Methyltransferase type 11 - - - 0.000000000000000001559 97.0
YYD3_k127_1293318_2 B3/4 domain - - - 0.000000000000000004285 93.0
YYD3_k127_1310946_0 HAD superfamily (subfamily IG) hydrolase 5'-Nucleotidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 356.0
YYD3_k127_1310946_1 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000005285 175.0
YYD3_k127_1310946_2 S-layer homology domain - - - 0.000002267 58.0
YYD3_k127_1350369_0 CHAT domain - - - 0.0000000000000000000000000000000000000000000000000000002788 219.0
YYD3_k127_1354484_0 Enoyl-CoA hydratase/isomerase K01661 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0008150,GO:0008152,GO:0008935,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0042180,GO:0042181,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:0071890,GO:1901576,GO:1901661,GO:1901663 4.1.3.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000927 422.0
YYD3_k127_1354484_1 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 300.0
YYD3_k127_1354484_2 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.00000000000000000000000000000000000000000000000000000005543 207.0
YYD3_k127_1354484_3 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000005585 148.0
YYD3_k127_1354484_4 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 0.00000000000000000003683 94.0
YYD3_k127_135718_0 glycosyl transferase, family 39 - - - 0.00000000006084 70.0
YYD3_k127_1375039_0 Major royal jelly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 377.0
YYD3_k127_1375039_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 317.0
YYD3_k127_1375039_2 DinB superfamily - - - 0.000000000000000000000000000000000000000000001287 172.0
YYD3_k127_1376908_0 SMART serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 352.0
YYD3_k127_1376908_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000001965 175.0
YYD3_k127_1410396_0 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000202 244.0
YYD3_k127_1410396_1 domain, Protein K20276 - - 0.000000000000000000000000000000000000000000000000000000000000001796 236.0
YYD3_k127_1410396_2 Mycolic acid cyclopropane synthetase - - - 0.000000000426 71.0
YYD3_k127_1410396_3 PFAM FIST C domain - - - 0.00000002273 56.0
YYD3_k127_1410396_4 - - - - 0.000004541 59.0
YYD3_k127_1444960_0 ABC-2 family transporter protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004203 250.0
YYD3_k127_1444960_1 Glycosyl transferases group 1 - - - 0.00000000000000000002517 105.0
YYD3_k127_1444960_2 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000003016 63.0
YYD3_k127_144514_0 pfam abc K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 292.0
YYD3_k127_144514_1 ABC-2 family transporter protein - - - 0.0000000000000000000000000000000000000000008761 171.0
YYD3_k127_144514_2 domain protein K01992 - - 0.0000000000000151 87.0
YYD3_k127_144514_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00004514 55.0
YYD3_k127_144514_4 peptidyl-tyrosine sulfation - - - 0.0005175 51.0
YYD3_k127_1447945_0 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 327.0
YYD3_k127_1447945_1 7TM receptor with intracellular HD hydrolase K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002044 304.0
YYD3_k127_1447945_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000003638 97.0
YYD3_k127_1447945_3 Belongs to the 5'-nucleotidase family K11751 - 3.1.3.5,3.6.1.45 0.00000000007909 69.0
YYD3_k127_146149_0 MutL protein K00854 - 2.7.1.17 3.139e-258 811.0
YYD3_k127_146149_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 564.0
YYD3_k127_146149_2 - - - - 0.0000000000000001181 85.0
YYD3_k127_146149_3 ABC-type sugar transport system periplasmic component K02027 - - 0.0000000000000009748 81.0
YYD3_k127_146149_4 - - - - 0.00000000000188 75.0
YYD3_k127_1491675_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000006892 226.0
YYD3_k127_1491675_1 RNA polymerase sigma factor K03088 - - 0.000000001018 66.0
YYD3_k127_1491675_2 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.000000001284 70.0
YYD3_k127_1503039_0 Predicted ATPase of the ABC class - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005259 387.0
YYD3_k127_1503039_1 TonB C terminal K03646,K03832 - - 0.0000000000005645 80.0
YYD3_k127_1504528_0 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000000000000000000000000000000000005172 158.0
YYD3_k127_1504528_1 capsular - - - 0.0000000000000000000002322 106.0
YYD3_k127_1504528_2 TIGRFAM EpsI family protein - - - 0.0000008277 61.0
YYD3_k127_1504528_3 Tetratricopeptide repeat - - - 0.000002345 61.0
YYD3_k127_1506648_0 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005073 294.0
YYD3_k127_1506648_1 Catalyzes the conversion of chorismate to isochorismate K02552 GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 5.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000363 235.0
YYD3_k127_1506648_2 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.00000000000000000000000000001359 135.0
YYD3_k127_1506648_3 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 0.00000000000000000000000000002267 130.0
YYD3_k127_155492_0 SMART AAA ATPase K02450 - - 0.000000000000000000000000000000000000000000000000000000000000007262 226.0
YYD3_k127_155492_1 mannose-ethanolamine phosphotransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000004244 230.0
YYD3_k127_155492_2 AAA domain K16554 - - 0.00000000000000000008222 98.0
YYD3_k127_155492_3 Chain length determinant protein K16692 - - 0.0000000000000002759 92.0
YYD3_k127_155492_4 PFAM Polysaccharide export protein - - - 0.0000000000007934 72.0
YYD3_k127_1557458_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000049,GO:0000154,GO:0001510,GO:0002935,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016426,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0070040,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:0140102,GO:1901360,GO:1901363 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000008121 274.0
YYD3_k127_1557458_1 cellulose binding - - - 0.000003465 57.0
YYD3_k127_1557458_2 Protein tyrosine kinase K11912 - 2.7.11.1 0.0000168 47.0
YYD3_k127_1557458_3 Trehalose utilisation K01179 - 3.2.1.4 0.0005093 50.0
YYD3_k127_1571731_0 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001759 252.0
YYD3_k127_1571731_1 DUF167 K09131 - - 0.0000003356 57.0
YYD3_k127_160213_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 555.0
YYD3_k127_160213_1 serine-type endopeptidase activity K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006724 304.0
YYD3_k127_160213_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000009509 241.0
YYD3_k127_1606563_0 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 6.796e-291 915.0
YYD3_k127_1606563_1 PolyA polymerase K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 395.0
YYD3_k127_1606563_2 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.000000000000000000000000000000000000000000000000000000000000009193 224.0
YYD3_k127_1606563_3 - - - - 0.0000000000000000004125 94.0
YYD3_k127_1659153_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 7.287e-196 620.0
YYD3_k127_1659153_1 Amidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 340.0
YYD3_k127_1659153_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000001539 183.0
YYD3_k127_1669128_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 383.0
YYD3_k127_1669128_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002789 274.0
YYD3_k127_1669128_10 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000002757 148.0
YYD3_k127_1669128_11 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000002207 142.0
YYD3_k127_1669128_12 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000002046 136.0
YYD3_k127_1669128_13 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000001487 113.0
YYD3_k127_1669128_14 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000356 100.0
YYD3_k127_1669128_15 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000007987 111.0
YYD3_k127_1669128_16 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000009564 102.0
YYD3_k127_1669128_17 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000001402 89.0
YYD3_k127_1669128_18 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000009054 71.0
YYD3_k127_1669128_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001415 250.0
YYD3_k127_1669128_3 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000002146 233.0
YYD3_k127_1669128_4 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000007366 215.0
YYD3_k127_1669128_5 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358,K15771 GO:0001666,GO:0001817,GO:0001819,GO:0002791,GO:0002793,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0006950,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009274,GO:0009275,GO:0009628,GO:0009986,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0010339,GO:0010467,GO:0016020,GO:0019538,GO:0019899,GO:0022610,GO:0030312,GO:0032677,GO:0032757,GO:0032879,GO:0032880,GO:0034641,GO:0034645,GO:0035375,GO:0035821,GO:0036293,GO:0040007,GO:0042221,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044003,GO:0044068,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044426,GO:0044444,GO:0044462,GO:0044464,GO:0044650,GO:0044651,GO:0048518,GO:0048522,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051701,GO:0051704,GO:0051817,GO:0065007,GO:0070201,GO:0070482,GO:0071704,GO:0071944,GO:0090087,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:2000482,GO:2000484 - 0.000000000000000000000000000000000000000000000000000000001202 201.0
YYD3_k127_1669128_6 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000002261 197.0
YYD3_k127_1669128_7 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000589 195.0
YYD3_k127_1669128_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000003413 189.0
YYD3_k127_1669128_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000002198 171.0
YYD3_k127_1723567_0 serine-type peptidase activity K06978 - - 0.000000000000000000000000000000000000000000000004646 187.0
YYD3_k127_1723567_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0004951 51.0
YYD3_k127_1739784_0 membrane organization K07277 - - 0.00000000000000000002148 105.0
YYD3_k127_1739784_1 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.00006415 55.0
YYD3_k127_1744545_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 1.565e-219 688.0
YYD3_k127_1744545_1 cytochrome c K02305 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000003112 233.0
YYD3_k127_1744545_2 glyoxalase III activity - - - 0.0000000000000000002663 91.0
YYD3_k127_1770723_0 TIGRFAM ornithine aminotransferase K00819 - 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007528 552.0
YYD3_k127_1770723_1 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002028 271.0
YYD3_k127_1770723_2 Mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000001691 248.0
YYD3_k127_1770723_3 FAD binding domain - - - 0.00000000000000000000000000000000000000000000002064 188.0
YYD3_k127_1770723_4 Chalcone and stilbene synthases, C-terminal domain K16167,K16233 - - 0.0000000000000000000000000000000000000000000001365 190.0
YYD3_k127_1770723_5 Peptidase family M48 - - - 0.0000000000000000000000355 115.0
YYD3_k127_1770723_6 protein related to plant photosystem II stability assembly factor - - - 0.000003109 56.0
YYD3_k127_1773517_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009327 351.0
YYD3_k127_1773517_1 TPR repeat-containing protein - - - 0.000000000000000000000001053 121.0
YYD3_k127_1802123_0 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 350.0
YYD3_k127_1802123_1 oxidoreductase activity K00337,K03333,K04771,K07114 - 1.1.3.6,1.6.5.3,3.4.21.107 0.000000000000000000000000008755 128.0
YYD3_k127_1802123_2 extracellular matrix structural constituent - - - 0.000000000001079 82.0
YYD3_k127_1802123_3 extracellular matrix structural constituent - - - 0.000000001848 70.0
YYD3_k127_1803221_0 Citrate lyase, alpha subunit (CitF) K01643 - 2.8.3.10 6.811e-244 794.0
YYD3_k127_1803221_1 prosthetic group binding K01644,K01646,K18292 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0008815,GO:0009346,GO:0009987,GO:0015980,GO:0016829,GO:0016830,GO:0016833,GO:0032991,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 4.1.3.25,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 462.0
YYD3_k127_1803221_2 3-isopropylmalate dehydrogenase activity K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 391.0
YYD3_k127_1803221_4 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000007332 81.0
YYD3_k127_1803221_5 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00008109 53.0
YYD3_k127_182252_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 468.0
YYD3_k127_182252_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008052 464.0
YYD3_k127_182252_10 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000003303 209.0
YYD3_k127_182252_11 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000005579 156.0
YYD3_k127_182252_12 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000002906 134.0
YYD3_k127_182252_13 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000004417 84.0
YYD3_k127_182252_14 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000004475 73.0
YYD3_k127_182252_15 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000005016 63.0
YYD3_k127_182252_16 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0001978 49.0
YYD3_k127_182252_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 333.0
YYD3_k127_182252_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 334.0
YYD3_k127_182252_4 metallophosphoesterase K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 315.0
YYD3_k127_182252_5 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 308.0
YYD3_k127_182252_6 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008958 284.0
YYD3_k127_182252_7 PFAM glutamine amidotransferase class-I K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000001147 252.0
YYD3_k127_182252_8 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000009178 254.0
YYD3_k127_182252_9 Belongs to the FPP GGPP synthase family K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000002827 214.0
YYD3_k127_1827767_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 6.403e-254 824.0
YYD3_k127_1830888_0 Integral membrane protein TerC family K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 330.0
YYD3_k127_1830888_1 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000004225 277.0
YYD3_k127_1830888_2 Protein of unknown function (DUF3798) - - - 0.00009747 47.0
YYD3_k127_1831386_0 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000004675 132.0
YYD3_k127_1831386_1 Methyltransferase domain - - - 0.000000000000000000000000000002564 130.0
YYD3_k127_1831386_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000118 116.0
YYD3_k127_1831386_3 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000003082 118.0
YYD3_k127_1842826_0 Protein of unknown function (DUF1624) - - - 0.00000000000000000000000000008956 130.0
YYD3_k127_1842826_1 metallopeptidase activity K01176 - 3.2.1.1 0.00000000000003002 84.0
YYD3_k127_1847830_0 Propeptide_C25 - - - 0.00000000000000000000000000000000000001021 167.0
YYD3_k127_1856275_0 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001529 294.0
YYD3_k127_1856275_1 glycosyl transferase - - - 0.0000000000000000006516 93.0
YYD3_k127_1856275_2 methyltransferase - - - 0.00000000000000004948 92.0
YYD3_k127_1859163_0 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000001255 240.0
YYD3_k127_1859163_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000004947 187.0
YYD3_k127_1859163_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000004828 159.0
YYD3_k127_1859163_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000002091 98.0
YYD3_k127_1870549_0 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 357.0
YYD3_k127_1870549_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000001625 220.0
YYD3_k127_1870549_2 Belongs to the MraZ family K03925 - - 0.00000000000000000003046 97.0
YYD3_k127_1870549_3 Type IV pilus biogenesis stability protein PilW - - - 0.000000000347 66.0
YYD3_k127_1870549_4 antisigma factor binding - - - 0.000002973 55.0
YYD3_k127_1904225_0 coenzyme F390 K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006306 361.0
YYD3_k127_1904225_1 PFAM Glu Leu Phe Val dehydrogenase , Glu Leu Phe Val dehydrogenase dimerization region K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 306.0
YYD3_k127_1904225_2 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001143 286.0
YYD3_k127_1904225_3 Glycosyl transferase 4-like domain - - - 0.00000108 53.0
YYD3_k127_1938662_0 Aminotransferase class-V K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 427.0
YYD3_k127_1938662_1 Transcriptional regulator - - - 0.000000000000000000000000000000000001276 151.0
YYD3_k127_1938662_2 Histidine kinase K01768,K12132 - 2.7.11.1,4.6.1.1 0.0000000000000000000000003869 112.0
YYD3_k127_1956408_0 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000001722 259.0
YYD3_k127_1956408_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000008023 260.0
YYD3_k127_1956408_2 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000002055 222.0
YYD3_k127_1956408_3 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000004016 171.0
YYD3_k127_19633_0 Evidence 5 No homology to any previously reported sequences K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000001067 260.0
YYD3_k127_19633_1 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000175 174.0
YYD3_k127_19633_2 signal peptide peptidase SppA, 36K type K04773 - - 0.00000000000000000006485 93.0
YYD3_k127_19633_3 - - - - 0.00000000000000001395 95.0
YYD3_k127_1965672_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0005392 52.0
YYD3_k127_196802_0 Sodium:solute symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005828 620.0
YYD3_k127_196802_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000504 270.0
YYD3_k127_196802_2 Protein of unknown function (DUF2911) - - - 0.00000000000000000000000000000000000000000000000000000000003388 217.0
YYD3_k127_196802_3 N-acetylglucosaminylinositol deacetylase activity K22136 - - 0.000000000000000000000000000000000000000000000000001932 184.0
YYD3_k127_196802_4 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000007227 113.0
YYD3_k127_1982966_0 extracellular matrix structural constituent - - - 0.0000000000006782 83.0
YYD3_k127_1982966_1 intracellular chloride channel activity K05027,K05030 - - 0.0000008886 63.0
YYD3_k127_1982966_2 COG0515 Serine threonine protein kinase K12132 - 2.7.11.1 0.0006215 44.0
YYD3_k127_199597_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.185e-251 787.0
YYD3_k127_199597_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000556 379.0
YYD3_k127_199597_2 Heme copper-type cytochrome quinol oxidase, subunit K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 296.0
YYD3_k127_199597_3 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000293 234.0
YYD3_k127_199597_4 Protein of unknown function (DUF3179) - - - 0.000000000000000000000000000000000000003338 168.0
YYD3_k127_199597_5 Cytochrome oxidase assembly protein K02259 - - 0.00000000000000000000000000000000000001048 167.0
YYD3_k127_199597_6 COG1845 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.000000000000000000000000002554 123.0
YYD3_k127_199597_7 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.000000000000000000005881 96.0
YYD3_k127_2029094_0 Peptidase M16C associated K06972 - - 3.263e-260 847.0
YYD3_k127_2039596_0 Domains REC, sigma54 interaction, HTH8 K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 413.0
YYD3_k127_2039596_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002503 252.0
YYD3_k127_2039596_10 COG0457 FOG TPR repeat - - - 0.0000003007 64.0
YYD3_k127_2039596_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000006498 240.0
YYD3_k127_2039596_3 undecaprenyl-phosphate glucose phosphotransferase activity K05946,K21303 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016780,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0046402,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.4.1.187,2.7.8.40 0.00000000000000000000000000000000000000000000000000002947 201.0
YYD3_k127_2039596_4 Polysaccharide export protein K01991,K20988 - - 0.000000000000000000000000003155 124.0
YYD3_k127_2039596_5 NUBPL iron-transfer P-loop NTPase K16554 - - 0.0000000000000000000000321 109.0
YYD3_k127_2039596_6 xylanase chitin deacetylase - - - 0.00000000000000000000004846 102.0
YYD3_k127_2039596_7 PFAM transcriptional activator domain - - - 0.000000000000000008094 99.0
YYD3_k127_2039596_8 TIGRFAM polysaccharide chain length determinant protein, PEP-CTERM locus subfamily - - - 0.000000000003882 79.0
YYD3_k127_2039596_9 Fibronectin type 3 domain-containing protein K06882 - - 0.00000001425 68.0
YYD3_k127_2040023_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007865 475.0
YYD3_k127_2040023_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000000000008426 209.0
YYD3_k127_2040023_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000123 166.0
YYD3_k127_2040023_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000000000000003332 94.0
YYD3_k127_2040023_4 extracellular matrix structural constituent - - - 0.000006128 59.0
YYD3_k127_2068242_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 511.0
YYD3_k127_2068242_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009422 421.0
YYD3_k127_2068242_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 341.0
YYD3_k127_2068242_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000005054 160.0
YYD3_k127_2068242_4 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.00000000000005054 79.0
YYD3_k127_2082197_0 Histidine kinase - - - 0.00000000000000000003721 103.0
YYD3_k127_2082197_1 PspC domain K03973 - - 0.0000000000000003441 82.0
YYD3_k127_2082197_2 Rdx family K07401 - - 0.00000000000001318 74.0
YYD3_k127_2084790_0 aminopeptidase N - - - 0.000000001756 70.0
YYD3_k127_2084790_1 COG3209 Rhs family protein - - - 0.00001446 57.0
YYD3_k127_2110546_0 Peptidylprolyl isomerase K01802,K03769,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000002166 255.0
YYD3_k127_2110546_1 CBS domain - - - 0.00000000000000000000000000000000000000000000000000000000008904 231.0
YYD3_k127_2110546_2 CBS domain - - - 0.000000000000000000000000000000000000000000000000000001236 218.0
YYD3_k127_2110546_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000003781 108.0
YYD3_k127_2110546_4 Polysaccharide biosynthesis protein - - - 0.000000000000000000000009032 115.0
YYD3_k127_2110546_5 FemAB family - - - 0.0000000000000000197 97.0
YYD3_k127_2110546_6 cellulose binding - - - 0.00000000002784 75.0
YYD3_k127_2110940_0 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 311.0
YYD3_k127_2110940_1 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000373 284.0
YYD3_k127_2110940_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000004567 224.0
YYD3_k127_2110940_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000000006322 217.0
YYD3_k127_2118777_0 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074 350.0
YYD3_k127_2118777_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 335.0
YYD3_k127_2118777_2 carbamoyl transferase, NodU family K00612 - - 0.00000000000000000000000000000000000005073 146.0
YYD3_k127_2118777_3 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000006897 68.0
YYD3_k127_2130417_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000006943 132.0
YYD3_k127_2130417_1 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000000004813 128.0
YYD3_k127_2130417_2 MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000001592 105.0
YYD3_k127_2130417_3 Biopolymer transport protein ExbD/TolR K03560 - - 0.000000005469 64.0
YYD3_k127_2130417_4 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000009668 53.0
YYD3_k127_2130417_5 ompA family - - - 0.0001359 54.0
YYD3_k127_2130417_6 protein conserved in bacteria - - - 0.000829 53.0
YYD3_k127_21734_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 0.0 1039.0
YYD3_k127_21734_1 DNA topoisomerase II activity K02469 - 5.99.1.3 1.211e-313 981.0
YYD3_k127_21734_10 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives - - - 0.0001124 53.0
YYD3_k127_21734_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.494e-274 863.0
YYD3_k127_21734_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000001197 241.0
YYD3_k127_21734_4 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000001214 215.0
YYD3_k127_21734_5 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.000000000000000000000000000000000000000000000000002694 188.0
YYD3_k127_21734_6 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000005156 183.0
YYD3_k127_21734_7 TPM domain K06872 - - 0.0000000000000000000000000000000004901 145.0
YYD3_k127_21734_8 nucleotidyltransferase activity - - - 0.00000000000000000000109 104.0
YYD3_k127_21734_9 - - - - 0.00000000049 66.0
YYD3_k127_2174376_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 377.0
YYD3_k127_2174376_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 319.0
YYD3_k127_2174376_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000009683 264.0
YYD3_k127_2174376_3 Deoxynucleoside kinase K15518 - 2.7.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000007469 254.0
YYD3_k127_2174376_4 Nucleotidyl transferase K11528 - 2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000616 229.0
YYD3_k127_2174376_5 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000000000000004324 154.0
YYD3_k127_2174376_6 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000007388 81.0
YYD3_k127_2185535_0 Permease YjgP YjgQ family protein K07091,K11720 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006461 296.0
YYD3_k127_2185535_1 methyltransferase - - - 0.00000000000000000000000000000000000000000000000008095 201.0
YYD3_k127_2185535_2 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000006628 184.0
YYD3_k127_2188373_0 Thymidylate synthase complementing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 477.0
YYD3_k127_2188373_1 COG1473 Metal-dependent amidase aminoacylase carboxypeptidase K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 411.0
YYD3_k127_2188373_2 Belongs to the peptidase S11 family K01286,K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000422 267.0
YYD3_k127_2188373_3 Belongs to the peptidase S11 family K01286,K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000002141 231.0
YYD3_k127_2188373_4 PFAM isochorismatase hydrolase - - - 0.0000000000000000000000000000000000000001066 166.0
YYD3_k127_2188373_5 Methyltransferase K00587 - 2.1.1.100 0.0000000000000000003095 95.0
YYD3_k127_2188373_6 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000002135 85.0
YYD3_k127_2194589_0 Nickel-dependent hydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009697 437.0
YYD3_k127_2194589_1 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004675 273.0
YYD3_k127_2194589_2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B - - - 0.000000000000002902 75.0
YYD3_k127_2194589_3 Hydrogenase maturation protease K03605 - - 0.00000000158 66.0
YYD3_k127_221639_0 Cytochrome C and Quinol oxidase polypeptide I K15862 - 1.9.3.1 0.0 1122.0
YYD3_k127_221639_1 membrane protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000762 330.0
YYD3_k127_221639_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004594 286.0
YYD3_k127_221639_3 IG-like fold at C-terminal of FixG, putative oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001835 247.0
YYD3_k127_221639_4 PFAM Cytochrome c, class I K00406 - - 0.00000000000000000000000000000000000000000101 166.0
YYD3_k127_221639_5 Transcriptional regulator, Crp Fnr family K01420 - - 0.00000000000000000000000003473 118.0
YYD3_k127_221639_6 Iron-containing alcohol dehydrogenase K00001 - 1.1.1.1 0.0000000000000002121 80.0
YYD3_k127_221639_7 - - - - 0.00000000002669 65.0
YYD3_k127_221639_8 Cbb3-type cytochrome oxidase component FixQ K00407 - - 0.000393 48.0
YYD3_k127_222460_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007323 384.0
YYD3_k127_222460_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005666 376.0
YYD3_k127_222460_2 PFAM ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006 295.0
YYD3_k127_222460_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004737 277.0
YYD3_k127_224750_0 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 347.0
YYD3_k127_224750_1 Cytidine monophosphokinase K00876 - 2.7.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000001467 256.0
YYD3_k127_224750_2 Thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000003854 241.0
YYD3_k127_224750_3 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000001429 194.0
YYD3_k127_224750_4 Deoxynucleoside kinase - - - 0.0000000000000000000000000000000000000000000000002966 185.0
YYD3_k127_224750_5 ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000009369 123.0
YYD3_k127_224750_6 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000001118 96.0
YYD3_k127_225759_0 Belongs to the ABC transporter superfamily K05816,K10112 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 432.0
YYD3_k127_225759_1 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 361.0
YYD3_k127_225759_2 helix_turn _helix lactose operon repressor K02529,K03435 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 297.0
YYD3_k127_225759_3 cellulose binding K00505 - 1.14.18.1 0.00000000000000000000000000226 117.0
YYD3_k127_2286331_0 (ABC) transporter K06147,K06148,K11085,K16787,K18104,K18889 - 3.6.3.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006923 392.0
YYD3_k127_2286331_1 Putative adhesin - - - 0.00000004145 67.0
YYD3_k127_2301355_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 614.0
YYD3_k127_2301355_1 adenosylhomocysteinase activity K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005173 584.0
YYD3_k127_2301355_10 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000004615 84.0
YYD3_k127_2301355_11 Outer membrane lipoprotein K05807 - - 0.000000000001053 81.0
YYD3_k127_2301355_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 490.0
YYD3_k127_2301355_3 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 477.0
YYD3_k127_2301355_4 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01840,K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 456.0
YYD3_k127_2301355_5 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008608 392.0
YYD3_k127_2301355_6 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 366.0
YYD3_k127_2301355_7 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000401 148.0
YYD3_k127_2301355_8 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859,K07566 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24,2.7.7.87 0.000000000000000000000000000000002963 140.0
YYD3_k127_2301355_9 Ethylbenzene dehydrogenase - - - 0.000000000000002287 89.0
YYD3_k127_2316452_0 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001056 246.0
YYD3_k127_2316452_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000625 66.0
YYD3_k127_2325641_0 Sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004516 241.0
YYD3_k127_2325641_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000002739 148.0
YYD3_k127_2325641_2 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000002236 130.0
YYD3_k127_2325641_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000001827 113.0
YYD3_k127_2331989_0 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 372.0
YYD3_k127_2331989_1 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000007989 246.0
YYD3_k127_2331989_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000002635 189.0
YYD3_k127_2335740_0 Evidence 5 No homology to any previously reported sequences K01361,K13277 - 3.4.21.96 0.00000000000002599 85.0
YYD3_k127_2335740_1 signal transduction histidine kinase K07642 - 2.7.13.3 0.0000000000006326 81.0
YYD3_k127_2335740_2 - - - - 0.0007426 51.0
YYD3_k127_2337011_0 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 383.0
YYD3_k127_2337011_1 Rhomboid family - - - 0.000000000000000000000000000000000000002552 151.0
YYD3_k127_2337011_2 tetratricopeptide repeat - - - 0.000000000000005719 85.0
YYD3_k127_2337011_3 YacP-like NYN domain K06962 - - 0.00000001263 64.0
YYD3_k127_2337930_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000001004 269.0
YYD3_k127_2337930_1 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000003917 251.0
YYD3_k127_2337930_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K02549,K19802 GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855 4.2.1.113,5.1.1.20 0.000000000000000000000000000000000000000000003781 185.0
YYD3_k127_2343305_0 cellulose binding K00505 - 1.14.18.1 0.00000000009691 72.0
YYD3_k127_2343305_1 ErfK YbiS YcfS YnhG - - - 0.0008533 51.0
YYD3_k127_2346245_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 407.0
YYD3_k127_2346245_1 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 359.0
YYD3_k127_2346245_10 Helix-turn-helix domain - - - 0.000000000000001453 90.0
YYD3_k127_2346245_11 - - - - 0.0000000000003188 78.0
YYD3_k127_2346245_12 - - - - 0.00001821 46.0
YYD3_k127_2346245_2 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000575 289.0
YYD3_k127_2346245_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000002501 241.0
YYD3_k127_2346245_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000001227 228.0
YYD3_k127_2346245_5 purine ribonucleoside salvage K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000008749 183.0
YYD3_k127_2346245_6 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000002354 141.0
YYD3_k127_2346245_7 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000004234 99.0
YYD3_k127_2346245_8 MerR family transcriptional regulator - - - 0.00000000000000000021 98.0
YYD3_k127_2346245_9 phospholipase C - - - 0.00000000000000006251 89.0
YYD3_k127_2346542_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007671 363.0
YYD3_k127_2346542_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000007138 174.0
YYD3_k127_2346542_2 protein-(glutamine-N5) methyltransferase activity - - - 0.0000000000000000000000004902 118.0
YYD3_k127_2346542_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins - - - 0.0000000000000000000659 102.0
YYD3_k127_2346542_4 Methyltransferase domain - - - 0.00000000000000002845 93.0
YYD3_k127_2377183_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000006442 238.0
YYD3_k127_2380945_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 319.0
YYD3_k127_2380945_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006225,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009163,GO:0009165,GO:0009185,GO:0009188,GO:0009193,GO:0009194,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046048,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 306.0
YYD3_k127_2380945_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 305.0
YYD3_k127_2380945_3 Ribosome recycling factor K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000001352 219.0
YYD3_k127_2380945_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000003782 214.0
YYD3_k127_2380945_5 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000009123 185.0
YYD3_k127_2380945_6 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000001051 134.0
YYD3_k127_2380945_7 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000002413 130.0
YYD3_k127_2383810_0 N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000001404 213.0
YYD3_k127_2383810_1 PFAM Oxidoreductase FAD NAD(P)-binding - - - 0.0000000000000000000000000000000000000000000000008666 179.0
YYD3_k127_2383810_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000000001189 78.0
YYD3_k127_2395518_0 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 519.0
YYD3_k127_2395518_1 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000000000000000000005352 149.0
YYD3_k127_2395518_2 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000003046 143.0
YYD3_k127_2395518_3 Histidine kinase K07709 - 2.7.13.3 0.000000000000000000000000000000001061 149.0
YYD3_k127_2395518_4 protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.00000000000000000000000001062 123.0
YYD3_k127_2395518_5 of nitrite reductase and ring-hydroxylating K05710 - - 0.0000000000000000000000006505 111.0
YYD3_k127_2395518_6 Pfam:DUF59 K02612 - - 0.00000000000000000000112 104.0
YYD3_k127_2399510_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005737 593.0
YYD3_k127_2399510_1 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.00000000000000000002488 97.0
YYD3_k127_2413939_0 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 315.0
YYD3_k127_2413939_1 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000005224 244.0
YYD3_k127_2413939_2 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001103 244.0
YYD3_k127_2413939_3 Sugar nucleotidyl transferase - - - 0.00000000001356 74.0
YYD3_k127_2471100_0 Polysulphide reductase K00185 - - 6.93e-213 670.0
YYD3_k127_2471100_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 363.0
YYD3_k127_2471100_2 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 368.0
YYD3_k127_2471100_3 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000148 257.0
YYD3_k127_2471100_4 Protein of unknown function (DUF3341) - - - 0.00000000000000000000000000000000000000000000000000000002932 213.0
YYD3_k127_2471100_5 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000959 202.0
YYD3_k127_2471100_6 Molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 - - 0.000000000000000000000000000000000000002475 149.0
YYD3_k127_2471100_8 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.0000002343 56.0
YYD3_k127_2471100_9 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000171 44.0
YYD3_k127_2480839_0 Creatinase/Prolidase N-terminal domain K01262,K02027 - 3.4.11.9 9.175e-199 639.0
YYD3_k127_2480839_1 Domain of unknown function (DUF4382) - - - 0.000000000000000000000000000000002983 143.0
YYD3_k127_2480839_2 polysaccharide catabolic process - - - 0.00007383 51.0
YYD3_k127_254699_0 capsule polysaccharide biosynthetic process - - - 0.000000000000000000000000000008219 133.0
YYD3_k127_254699_1 SMART Integrin alpha beta-propellor repeat protein - - - 0.000000000000000000459 95.0
YYD3_k127_254699_2 cellulose binding - - - 0.00000000000001068 78.0
YYD3_k127_2548948_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009137 307.0
YYD3_k127_2548948_1 rna polymerase sigma factor - - - 0.000000000000000000000000000000000000000000001564 183.0
YYD3_k127_2548948_2 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000001996 136.0
YYD3_k127_2548948_3 Cytochrome c - - - 0.0000000000001304 83.0
YYD3_k127_2581501_0 - - - - 0.00000000000000000000000000000000000000000000004026 174.0
YYD3_k127_2581501_1 Major facilitator Superfamily - - - 0.00000000000000000000000000000001445 128.0
YYD3_k127_2581501_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000009266 59.0
YYD3_k127_2589790_0 flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 557.0
YYD3_k127_2589790_1 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001524 278.0
YYD3_k127_2589790_2 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000008648 233.0
YYD3_k127_2589790_3 pyridoxamine 5-phosphate - - - 0.000000000000000000000000000000000000000000000000006816 185.0
YYD3_k127_2601339_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0 1148.0
YYD3_k127_2601339_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 3.385e-199 636.0
YYD3_k127_2601339_2 metallophosphoesterase K07096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006349 284.0
YYD3_k127_2601339_3 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000001512 237.0
YYD3_k127_2601339_4 Kinase/pyrophosphorylase K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000004246 223.0
YYD3_k127_2601339_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000009753 177.0
YYD3_k127_2601339_6 TM2 domain - - - 0.00000000000000000000000000000000004871 139.0
YYD3_k127_2601339_7 endonuclease activity K07451 - - 0.0000000000004551 72.0
YYD3_k127_2620247_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 374.0
YYD3_k127_2620247_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00001341 53.0
YYD3_k127_2630852_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 510.0
YYD3_k127_2630852_1 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 313.0
YYD3_k127_2656352_0 L-asparaginase II - - - 0.00000000000000000000000000000000000000000000000000000000000000000001045 254.0
YYD3_k127_2656352_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K03918 - 2.6.1.36 0.00000000000000000000000000000000000000000000000000000000002573 211.0
YYD3_k127_2656352_2 PFAM AMMECR1 domain protein K09141 - - 0.000000000000000000000000000000000000000000001161 171.0
YYD3_k127_2656352_4 TonB-dependent receptor K02014 - - 0.0000000001821 75.0
YYD3_k127_26591_0 PFAM Cytochrome b b6 domain - - - 1.628e-200 644.0
YYD3_k127_26591_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 563.0
YYD3_k127_26591_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K07306,K17050 - 1.7.5.1,1.8.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 529.0
YYD3_k127_26591_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007652 314.0
YYD3_k127_26591_4 FES K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000001059 244.0
YYD3_k127_26591_5 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000001555 183.0
YYD3_k127_26591_6 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.000000000000000000000000004436 125.0
YYD3_k127_26591_7 - - - - 0.000000002158 67.0
YYD3_k127_26591_8 HWE histidine kinase - - - 0.00006763 47.0
YYD3_k127_2670293_0 Threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 368.0
YYD3_k127_2670293_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000003853 206.0
YYD3_k127_2670293_2 Protein of unknown function (DUF1573) - - - 0.00000000000008981 83.0
YYD3_k127_2670293_3 PFAM Methylamine - - - 0.00000000004444 74.0
YYD3_k127_2670293_4 Rhodanese Homology Domain - - - 0.0000001195 64.0
YYD3_k127_2670293_5 PQQ-like domain K17713 - - 0.00006231 54.0
YYD3_k127_2670293_6 PEGA domain - - - 0.000276 53.0
YYD3_k127_2673757_0 cellulase activity - - - 0.00000000000000000000000000000002744 143.0
YYD3_k127_2673757_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000007074 123.0
YYD3_k127_2673757_2 Zinc metalloprotease (Elastase) - - - 0.0000001566 62.0
YYD3_k127_2679869_0 Carbamoyltransferase C-terminus K00612 - - 5.231e-245 766.0
YYD3_k127_2679869_1 - - - - 0.000000000000000000000000000001024 127.0
YYD3_k127_2679869_2 PFAM nuclease (SNase K01174 - 3.1.31.1 0.0000000000000000005468 95.0
YYD3_k127_2679869_3 - - - - 0.000000000004115 67.0
YYD3_k127_2679869_4 - - - - 0.000002533 61.0
YYD3_k127_2679869_5 transcriptional regulator - - - 0.0005568 53.0
YYD3_k127_2684755_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1400.0
YYD3_k127_2684755_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006042 377.0
YYD3_k127_2684755_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 298.0
YYD3_k127_2684755_3 Belongs to the ompA family K03286 - - 0.0008813 49.0
YYD3_k127_2690201_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009707 276.0
YYD3_k127_2690201_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000009379 252.0
YYD3_k127_2690201_2 COG0577 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000003325 70.0
YYD3_k127_2690884_0 drug transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 338.0
YYD3_k127_2690884_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000003498 182.0
YYD3_k127_2693005_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004412 548.0
YYD3_k127_2693005_1 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003933 289.0
YYD3_k127_2693005_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000002168 224.0
YYD3_k127_2693005_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000003944 178.0
YYD3_k127_2693005_4 Lumazine binding domain K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000002122 160.0
YYD3_k127_2693005_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000009533 106.0
YYD3_k127_2727225_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 387.0
YYD3_k127_2727225_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 0.0000000000000000000000000000000000000005346 152.0
YYD3_k127_2727225_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0040007,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000001468 117.0
YYD3_k127_2727225_3 Ribosomal protein L31 - - - 0.0000000000000000000000002906 106.0
YYD3_k127_2727225_4 Sulfite exporter TauE/SafE K07090 - - 0.00000000003182 70.0
YYD3_k127_272806_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 1.05e-200 636.0
YYD3_k127_272806_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016625,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0047553,GO:0055114,GO:0071704,GO:0071944,GO:0072350 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 465.0
YYD3_k127_272806_2 Cystathionine beta-synthase K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 331.0
YYD3_k127_272806_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000008075 106.0
YYD3_k127_2764788_0 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 316.0
YYD3_k127_2764788_1 COGs COG2148 Sugar transferase involved in lipopolysaccharide synthesis K13012 - - 0.00000000000000000000000000000000000000000000000000000000000000005785 233.0
YYD3_k127_2764788_2 Lipopolysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000001982 227.0
YYD3_k127_2764788_3 TIGRFAM sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family - - - 0.00000000000000000000000000000000000000000000000000000002131 205.0
YYD3_k127_2764788_4 3-demethylubiquinone-9 3-O-methyltransferase activity K16328 - 2.7.1.83 0.00000006699 59.0
YYD3_k127_2764788_5 Archaeal Type IV pilin, N-terminal - - - 0.0001827 53.0
YYD3_k127_277186_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 3.169e-205 656.0
YYD3_k127_277186_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007201 350.0
YYD3_k127_277186_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000002479 212.0
YYD3_k127_277186_3 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000005086 192.0
YYD3_k127_277186_4 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000006357 130.0
YYD3_k127_277186_5 CoA-binding protein K06929 - - 0.000000000000000000000000000004513 126.0
YYD3_k127_277186_6 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000009088 129.0
YYD3_k127_277186_7 membrane - - - 0.00000000004285 74.0
YYD3_k127_2805008_0 PFAM ABC transporter related K15738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 610.0
YYD3_k127_2805008_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004999 582.0
YYD3_k127_2805008_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 1.6.5.3 0.00000000000000000000002101 109.0
YYD3_k127_2805008_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000008456 72.0
YYD3_k127_2805008_12 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.000000000001063 71.0
YYD3_k127_2805008_13 PIN domain - - - 0.000000003924 65.0
YYD3_k127_2805008_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008053 501.0
YYD3_k127_2805008_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 491.0
YYD3_k127_2805008_4 formate dehydrogenase (NAD+) activity K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 425.0
YYD3_k127_2805008_5 quinone binding K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 357.0
YYD3_k127_2805008_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009021 335.0
YYD3_k127_2805008_7 2 iron, 2 sulfur cluster binding K00334,K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000003274 183.0
YYD3_k127_2805008_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000003805 156.0
YYD3_k127_2805008_9 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000009095 117.0
YYD3_k127_2868555_0 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 486.0
YYD3_k127_2868555_1 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 310.0
YYD3_k127_2868555_2 (AIR) carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000279 271.0
YYD3_k127_2868555_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000004407 101.0
YYD3_k127_2868555_4 signal transduction protein - - - 0.000000000000000000001766 106.0
YYD3_k127_2868555_5 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02768,K02769,K02770 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0016020,GO:0016740,GO:0016772,GO:0016773,GO:0022804,GO:0022857,GO:0034219,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090563 2.7.1.202 0.00000000000000000001386 102.0
YYD3_k127_2868555_6 PFAM glycosyl transferase family 2 - - - 0.000000000000001984 80.0
YYD3_k127_2900777_0 PFAM Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 351.0
YYD3_k127_2900777_1 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007697 267.0
YYD3_k127_2900777_2 - - - - 0.0000000000000000000000000000000000000000000000000001283 196.0
YYD3_k127_2900777_3 Suppressor of fused protein (SUFU) - - - 0.00000000000000000000000000004835 124.0
YYD3_k127_2900777_4 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.0000000008751 70.0
YYD3_k127_2945957_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007905 468.0
YYD3_k127_2945957_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 441.0
YYD3_k127_2945957_2 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000002684 167.0
YYD3_k127_2945957_3 Belongs to the ClpA ClpB family K03695,K03696 - - 0.00000000000000000000000000000000196 151.0
YYD3_k127_2945957_4 Peptidase M56 - - - 0.0000000000000000002538 100.0
YYD3_k127_3029200_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 348.0
YYD3_k127_3029200_1 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 314.0
YYD3_k127_3029200_2 beta-lactamase K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 304.0
YYD3_k127_3029200_3 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000572 237.0
YYD3_k127_3029200_4 - - - - 0.00000000000000000000000000000000000000000000000000000001209 205.0
YYD3_k127_3029200_5 - - - - 0.0000000000003588 79.0
YYD3_k127_3029200_6 cellulose binding K00505 - 1.14.18.1 0.00000009815 62.0
YYD3_k127_303198_0 ROK family K00845,K00847 - 2.7.1.2,2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000002658 268.0
YYD3_k127_303198_1 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000003615 181.0
YYD3_k127_303198_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000005483 145.0
YYD3_k127_303198_3 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000001196 77.0
YYD3_k127_3069217_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K03918 - 2.6.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 512.0
YYD3_k127_3069217_1 membrane K08972 - - 0.00000000000000001527 91.0
YYD3_k127_3069217_2 amine dehydrogenase activity - - - 0.00003094 54.0
YYD3_k127_3119881_0 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000006346 244.0
YYD3_k127_3119881_1 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000007887 199.0
YYD3_k127_3119881_2 Phosphorylase superfamily K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000000000000000000000009333 187.0
YYD3_k127_3119881_3 Belongs to the UPF0145 family - - - 0.0000000000000000000000000000000000000001929 158.0
YYD3_k127_3119881_4 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000001536 143.0
YYD3_k127_312092_0 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001333 288.0
YYD3_k127_312092_1 Together with the serine threonine kinase PknD, may play a role in the specific interactions with host proteins during intracellular growth - - - 0.000000000000000000000000000002826 128.0
YYD3_k127_312092_2 - - - - 0.0008483 42.0
YYD3_k127_3132824_0 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 413.0
YYD3_k127_3132824_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 396.0
YYD3_k127_3132824_2 Protein-disulfide isomerase - - - 0.000000000000000000000000000000000000000000000005296 192.0
YYD3_k127_3132824_3 Transport permease protein K01992 - - 0.0000000000000000000000000000000009929 139.0
YYD3_k127_3132824_4 PFAM Phage derived protein Gp49-like (DUF891) - - - 0.00000000000000000000000000001339 135.0
YYD3_k127_3132824_5 PFAM Helix-turn-helix - - - 0.00000000000000000000000427 105.0
YYD3_k127_3158103_0 protein related to plant photosystem II stability assembly factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 447.0
YYD3_k127_3158103_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 296.0
YYD3_k127_3158103_2 ThiS family K03636 - - 0.000000000000000000001237 107.0
YYD3_k127_3158103_3 - - - - 0.00004765 56.0
YYD3_k127_3168182_0 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000812 238.0
YYD3_k127_3168182_1 Putative glucoamylase K13688 - - 0.0000000000000000000000000000000000000000000000000000000000319 220.0
YYD3_k127_3168182_2 Aerotolerance regulator N-terminal - - - 0.0000000000000000000000000000244 136.0
YYD3_k127_3185238_0 Carbamoyl-phosphate synthase L chain, ATP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 566.0
YYD3_k127_3185238_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000581 455.0
YYD3_k127_3185238_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 365.0
YYD3_k127_3185238_3 Belongs to the peptidase S51 family - - - 0.000000000000000000000000000000000000000000000000000000006022 210.0
YYD3_k127_3186661_0 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005503 416.0
YYD3_k127_3186661_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 314.0
YYD3_k127_3186661_10 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000005377 91.0
YYD3_k127_3186661_11 Carboxymuconolactone decarboxylase family - - - 0.0000000000000001443 82.0
YYD3_k127_3186661_12 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000004829 88.0
YYD3_k127_3186661_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000001756 270.0
YYD3_k127_3186661_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000001167 238.0
YYD3_k127_3186661_4 Fungalysin metallopeptidase (M36) - - - 0.0000000000000000000000000000000000000000000000000001538 209.0
YYD3_k127_3186661_5 Transcriptional regulator, TraR DksA family K06204 - - 0.000000000000000000000000000009982 124.0
YYD3_k127_3186661_6 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000002999 115.0
YYD3_k127_3186661_7 PFAM DivIVA K04074 - - 0.000000000000000000506 98.0
YYD3_k127_3186661_8 STAS domain K04749 - - 0.0000000000000000005517 101.0
YYD3_k127_3186661_9 Carboxymuconolactone decarboxylase family - - - 0.000000000000000002685 87.0
YYD3_k127_3196984_0 Bacterial protein of unknown function (DUF885) - - - 3.527e-220 698.0
YYD3_k127_3196984_1 ABC transporter K02021,K06147,K06148,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008417 615.0
YYD3_k127_3196984_2 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008705 355.0
YYD3_k127_3196984_3 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000008688 131.0
YYD3_k127_3196984_4 - - - - 0.0000000000000000000000000000401 121.0
YYD3_k127_3196984_5 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.00000000000000000000003026 108.0
YYD3_k127_3206772_0 NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004919 548.0
YYD3_k127_3206772_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000002322 222.0
YYD3_k127_3206772_2 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.00008505 48.0
YYD3_k127_321366_0 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 586.0
YYD3_k127_321366_1 GTP-binding protein HSR1-related K06944 - - 0.00000000000000000000000000000000000000000000000000000006032 206.0
YYD3_k127_321366_2 trisaccharide binding K03556 - - 0.000000000003674 69.0
YYD3_k127_3216080_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02504,K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009328 595.0
YYD3_k127_3216080_1 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002571 447.0
YYD3_k127_3216080_2 PFAM type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008323 426.0
YYD3_k127_3216080_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000001151 87.0
YYD3_k127_3216080_4 ComEA protein K02237 - - 0.0000000000003074 74.0
YYD3_k127_3218271_0 Glycosyltransferase like family 2 K11936 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001711 262.0
YYD3_k127_3218271_1 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000965 197.0
YYD3_k127_3218271_2 - - - - 0.00001982 56.0
YYD3_k127_3236845_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1191.0
YYD3_k127_3242674_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. K10125 - 2.7.13.3 0.00000000000000000000000000000000000001038 165.0
YYD3_k127_3242674_1 PFAM response regulator receiver - - - 0.0000000000000000000000005992 115.0
YYD3_k127_3250881_0 Encoded by - - - 0.000000000000007343 88.0
YYD3_k127_3250881_1 - - - - 0.000000000003389 79.0
YYD3_k127_3250881_2 Tetratricopeptide repeat - - - 0.0001238 49.0
YYD3_k127_3251325_0 AcrB/AcrD/AcrF family K03296 - - 2.048e-313 992.0
YYD3_k127_3251325_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 359.0
YYD3_k127_3251325_10 Outer membrane efflux protein K12543 - - 0.00000003257 67.0
YYD3_k127_3251325_2 Bacterial transferase hexapeptide - - - 0.000000000000000000000000000000000000000000000000001515 208.0
YYD3_k127_3251325_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000006685 173.0
YYD3_k127_3251325_4 Highly conserved protein containing a thioredoxin domain - - - 0.0000000000000000000000000000001535 140.0
YYD3_k127_3251325_5 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000001834 114.0
YYD3_k127_3251325_6 TIGRFAM TonB family protein K03832 - - 0.0000000000000001123 94.0
YYD3_k127_3251325_7 Bacterial regulatory proteins, tetR family K09017 - - 0.000000000000001962 84.0
YYD3_k127_3251325_8 DUF218 domain - - - 0.000000000000002531 84.0
YYD3_k127_3251325_9 pfkB family carbohydrate kinase - - - 0.000000001001 72.0
YYD3_k127_3253174_0 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.000000000000000000000000000000000000000000000000000000000000000001574 237.0
YYD3_k127_3253174_1 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000000003617 140.0
YYD3_k127_3253174_2 Outer membrane lipoprotein - - - 0.000000000000000006112 93.0
YYD3_k127_3268971_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 546.0
YYD3_k127_3268971_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 505.0
YYD3_k127_3268971_2 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 456.0
YYD3_k127_3268971_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000001977 173.0
YYD3_k127_3268971_4 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000176 69.0
YYD3_k127_3280421_0 efflux transmembrane transporter activity - - - 0.000000000000000004345 85.0
YYD3_k127_3280421_1 peptidyl-tyrosine sulfation - - - 0.00000001444 68.0
YYD3_k127_3280421_2 - - - - 0.000218 54.0
YYD3_k127_3286593_0 Endonuclease Exonuclease Phosphatase - - - 0.000000000000000000000000002612 125.0
YYD3_k127_3286593_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000007888 96.0
YYD3_k127_3292067_0 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000974 192.0
YYD3_k127_3292067_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000003389 98.0
YYD3_k127_3292067_2 efflux transmembrane transporter activity - - - 0.0008117 51.0
YYD3_k127_3299319_0 Binding-protein-dependent transport system inner membrane component K10110,K15772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 471.0
YYD3_k127_3299319_1 Sugar ABC transporter permease K10109,K15770,K15771 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 311.0
YYD3_k127_3299319_2 C-terminal binding-module, SLH-like, of glucodextranase - - - 0.00000000001443 76.0
YYD3_k127_3315012_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 584.0
YYD3_k127_3315012_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 295.0
YYD3_k127_3315012_2 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000003681 198.0
YYD3_k127_3315012_3 decarboxylase - - - 0.000000000000000000000000000002731 128.0
YYD3_k127_3315012_4 Parallel beta-helix repeats - - - 0.000000000000000000000000012 126.0
YYD3_k127_3315012_5 PFAM EamA-like transporter family - - - 0.000002501 53.0
YYD3_k127_3319861_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 2.434e-230 722.0
YYD3_k127_3319861_1 Domain of unknown function (DUF5117) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007451 586.0
YYD3_k127_3319861_2 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008099 344.0
YYD3_k127_3319861_3 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000629 287.0
YYD3_k127_3319861_4 cytochrome c nitrite reductase K15876 - - 0.00000000000000000000000000000000000000000000000000003486 194.0
YYD3_k127_3319861_5 - - - - 0.00000000007673 72.0
YYD3_k127_3344421_0 belongs to the iron- containing alcohol dehydrogenase family K04072 - 1.1.1.1,1.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 352.0
YYD3_k127_3344421_1 catalyzes the conversion of acetate and CoA to acetyl-CoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000004244 277.0
YYD3_k127_334740_0 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.00000000000000000000000000000000000000000006681 175.0
YYD3_k127_334740_1 -O-antigen K18814 - - 0.000000000000000000003351 108.0
YYD3_k127_334740_2 Redoxin K03564 - 1.11.1.15 0.0000000002572 68.0
YYD3_k127_334740_3 Redoxin K03564 - 1.11.1.15 0.00000001269 56.0
YYD3_k127_334740_4 overlaps another CDS with the same product name - - - 0.00000005437 66.0
YYD3_k127_3349818_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 391.0
YYD3_k127_3349818_1 Aminotransferase class I and II K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 375.0
YYD3_k127_3349818_2 Peptidase dimerisation domain K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000003118 265.0
YYD3_k127_3349818_3 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000006636 233.0
YYD3_k127_3349818_4 - - - - 0.000000000000000000000000000000000000001022 166.0
YYD3_k127_3349818_5 metallocarboxypeptidase activity K14054 - - 0.000000000000000000000000000000005571 144.0
YYD3_k127_3349818_6 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000007788 81.0
YYD3_k127_3349818_7 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000003243 63.0
YYD3_k127_3349818_8 extracellular matrix structural constituent - - - 0.0001961 51.0
YYD3_k127_3370754_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 432.0
YYD3_k127_3370754_1 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 308.0
YYD3_k127_3370754_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000002716 172.0
YYD3_k127_3370754_3 COG NOG14600 non supervised orthologous group - - - 0.00000000000000000000000000000000344 129.0
YYD3_k127_3370754_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000000259 127.0
YYD3_k127_3370754_5 - - - - 0.0000002076 56.0
YYD3_k127_33734_0 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 282.0
YYD3_k127_33734_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000003023 245.0
YYD3_k127_33734_2 Protein of unknown function (DUF354) K09726 - - 0.000000000000000000000000000000000000000000000000000000000000000005928 241.0
YYD3_k127_33734_3 Asparagine synthase - - - 0.00000000000000000000000000000000000000000000000002755 202.0
YYD3_k127_33734_4 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000001449 156.0
YYD3_k127_33734_5 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000007715 154.0
YYD3_k127_33734_6 Concanavalin A-like lectin/glucanases superfamily - - - 0.000000000000000006769 85.0
YYD3_k127_33734_7 Asparagine synthase K01953 - 6.3.5.4 0.0000000002942 68.0
YYD3_k127_3382023_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.471e-208 660.0
YYD3_k127_3382023_1 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009255 277.0
YYD3_k127_3386816_0 capsule polysaccharide biosynthetic process - - - 0.00000000000000007022 92.0
YYD3_k127_3386816_1 BNR repeat-like domain - - - 0.0003859 52.0
YYD3_k127_338725_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 323.0
YYD3_k127_338725_1 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 301.0
YYD3_k127_338725_2 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006631 298.0
YYD3_k127_338725_3 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003173 271.0
YYD3_k127_3394757_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 1.015e-239 765.0
YYD3_k127_3394757_1 Pterin binding enzyme K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000000000000004566 262.0
YYD3_k127_3394757_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000001611 219.0
YYD3_k127_3394757_3 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000001168 128.0
YYD3_k127_3394757_4 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075,K15780 - 2.4.2.8,6.3.4.19 0.00000000002457 74.0
YYD3_k127_340357_0 Dehydrogenase E1 component K11381 - 1.2.4.4 2.785e-207 659.0
YYD3_k127_340357_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000007499 147.0
YYD3_k127_340357_2 KR domain - - - 0.0000000000000000000000000000001156 132.0
YYD3_k127_340357_3 Endoribonuclease that initiates mRNA decay K18682 - - 0.00003872 46.0
YYD3_k127_3439800_0 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000001074 181.0
YYD3_k127_3439800_1 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000001172 171.0
YYD3_k127_344923_0 Polysaccharide biosynthesis C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000008347 247.0
YYD3_k127_344923_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000417 218.0
YYD3_k127_344923_2 Bacterial extracellular solute-binding proteins, family 5 Middle K13893 - - 0.00000000000000000000000000000000000149 152.0
YYD3_k127_3450235_0 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000001079 102.0
YYD3_k127_3451784_0 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001467 300.0
YYD3_k127_3458259_0 Phosphate sensor histidine kinase, HAMP and PAS domain-containing K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 338.0
YYD3_k127_3458259_1 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000001167 239.0
YYD3_k127_3458259_2 PFAM response regulator receiver K02483,K07658,K07668 - - 0.0000000000000000000000000000000000000000000000000000000000000004562 227.0
YYD3_k127_3458259_3 Protein of unknown function (DUF1579) - - - 0.00000000000000000000000000000000000000009135 160.0
YYD3_k127_3458259_4 glycosyl hydrolase, BNR repeat-containing protein - - - 0.000000000000000000000001426 119.0
YYD3_k127_3464524_0 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 474.0
YYD3_k127_3464524_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 407.0
YYD3_k127_3464524_2 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 327.0
YYD3_k127_3464524_3 COG0438 Glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004857 265.0
YYD3_k127_3464524_4 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07710 - 2.7.13.3 0.0000000000000000000000000000000000000000000000001214 192.0
YYD3_k127_3464524_5 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000001621 166.0
YYD3_k127_3464524_6 HIT domain K01518,K02503,K19710,K21220 - 2.5.1.3,2.7.7.53,3.6.1.17 0.00000000000000000000000000000009769 133.0
YYD3_k127_3464524_7 membrane - - - 0.00000000000000001547 87.0
YYD3_k127_3485386_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002343 274.0
YYD3_k127_3485386_1 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000015 126.0
YYD3_k127_3485386_2 transferase activity, transferring glycosyl groups K00786 - - 0.00000000000000000000000001414 125.0
YYD3_k127_3485386_3 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000006474 93.0
YYD3_k127_3494305_0 Glycosyltransferase Family 4 - - - 0.000000000000000000000003366 113.0
YYD3_k127_3494305_1 Y_Y_Y domain K11527 - 2.7.13.3 0.00000000000004772 86.0
YYD3_k127_3500408_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 5.934e-230 737.0
YYD3_k127_3500408_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 474.0
YYD3_k127_3500408_2 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006818 366.0
YYD3_k127_3500408_3 Ferrochelatase K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000003205 268.0
YYD3_k127_3500408_4 membrane - - - 0.000000002739 59.0
YYD3_k127_3500408_5 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599,K14080 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.246,4.1.1.37 0.00000003652 55.0
YYD3_k127_3501085_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 4.047e-213 673.0
YYD3_k127_3501085_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000879 442.0
YYD3_k127_3501085_2 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 338.0
YYD3_k127_3501085_3 Bacterial-like globin K06886 - - 0.000000000000000000000000000000000000000000000000008635 184.0
YYD3_k127_3502446_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006878 293.0
YYD3_k127_3502446_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.000000000000000000000000000000000000000000000000000000003534 205.0
YYD3_k127_3502446_2 Sporulation and spore germination - - - 0.000000000004917 72.0
YYD3_k127_3506227_0 PFAM transposase IS4 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 446.0
YYD3_k127_3506227_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 327.0
YYD3_k127_3506227_2 Voltage gated chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001038 308.0
YYD3_k127_3506227_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000003104 116.0
YYD3_k127_3506227_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000003151 61.0
YYD3_k127_3521687_0 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 497.0
YYD3_k127_3521687_1 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000001385 210.0
YYD3_k127_3521687_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000002412 59.0
YYD3_k127_3521687_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0005536 46.0
YYD3_k127_3531780_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K13378 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 600.0
YYD3_k127_3531780_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 375.0
YYD3_k127_3531780_2 PFAM Sodium sulphate symporter K14445 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001496 281.0
YYD3_k127_3531780_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000001702 244.0
YYD3_k127_3531780_4 2 iron, 2 sulfur cluster binding K00334,K00335 - 1.6.5.3 0.00000000000000000000000000000000000004387 149.0
YYD3_k127_3531780_5 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000001773 133.0
YYD3_k127_3531780_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000005717 119.0
YYD3_k127_3531780_7 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000002171 106.0
YYD3_k127_3531956_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 530.0
YYD3_k127_3531956_1 - - - - 0.00000009169 56.0
YYD3_k127_3550157_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 561.0
YYD3_k127_3550157_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 432.0
YYD3_k127_3550157_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 299.0
YYD3_k127_3550157_3 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001256 277.0
YYD3_k127_3550157_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000001706 220.0
YYD3_k127_3550157_5 Belongs to the thiolase family - - - 0.00000000000000000000000000000000000000000000001674 173.0
YYD3_k127_3550157_6 PFAM Beta-propeller repeat - - - 0.0000000000000000000000000000004661 130.0
YYD3_k127_3561441_0 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 509.0
YYD3_k127_3561441_1 PFAM Aspartate glutamate uridylate kinase K00926 - 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 308.0
YYD3_k127_3571037_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 575.0
YYD3_k127_3571037_1 von Willebrand factor (vWF) type A domain K07114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 429.0
YYD3_k127_3579738_0 Belongs to the MurCDEF family K01924 GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004764 480.0
YYD3_k127_3579738_1 Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex K03589 - - 0.0000003161 62.0
YYD3_k127_358860_0 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008093 341.0
YYD3_k127_358860_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004099 287.0
YYD3_k127_358860_10 guanyl-nucleotide exchange factor activity - - - 0.0006232 49.0
YYD3_k127_358860_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000005168 270.0
YYD3_k127_358860_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000003998 251.0
YYD3_k127_358860_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000004177 198.0
YYD3_k127_358860_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000001854 160.0
YYD3_k127_358860_6 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000001412 147.0
YYD3_k127_358860_7 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000002971 151.0
YYD3_k127_358860_8 Binds directly to 16S ribosomal RNA K02968 - - 0.00000008048 57.0
YYD3_k127_358860_9 cellulase activity - - - 0.0000001953 60.0
YYD3_k127_3591028_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 371.0
YYD3_k127_3591028_1 3-demethylubiquinone-9 3-O-methyltransferase activity K15257 - - 0.000000000000000000000000000000000000000000000000000000000000000004264 240.0
YYD3_k127_3591028_2 DNA-templated transcription, initiation K02405 - - 0.000000000000000000000000000000000000000000000003249 179.0
YYD3_k127_3591028_3 Parallel beta-helix repeats - - - 0.00000000005454 75.0
YYD3_k127_3591028_4 metallopeptidase activity K01387,K01730,K20276 - 3.4.24.3,4.2.2.6 0.0000001445 63.0
YYD3_k127_3597532_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 376.0
YYD3_k127_3597532_1 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0031224,GO:0031226,GO:0032940,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051205,GO:0051234,GO:0051259,GO:0051260,GO:0051641,GO:0061024,GO:0065003,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.000000000000000000000000000000000000000000000000000000000000000000000101 260.0
YYD3_k127_3597532_2 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.00000000000000000000000003569 120.0
YYD3_k127_3597532_3 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000008608 94.0
YYD3_k127_3597532_4 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000002287 63.0
YYD3_k127_3597532_5 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000002301 59.0
YYD3_k127_3606851_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 458.0
YYD3_k127_3606851_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 370.0
YYD3_k127_3606851_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 356.0
YYD3_k127_3606851_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001925 295.0
YYD3_k127_3606851_4 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000005783 250.0
YYD3_k127_3606851_5 Cell cycle protein K03588 - - 0.000000000000000000000000000000000000000000000000000000000000182 228.0
YYD3_k127_3606851_6 Belongs to the MurCDEF family K01924 GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.000000000000000000000000000000000000000000000000000002123 197.0
YYD3_k127_360733_0 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 421.0
YYD3_k127_360733_1 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 314.0
YYD3_k127_360733_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000471 108.0
YYD3_k127_3622487_0 radical SAM domain protein K22227 - - 0.00000000000000000000000000000000000000001471 170.0
YYD3_k127_3622487_1 Sulfotransferase family - - - 0.000001243 56.0
YYD3_k127_364270_0 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008736 488.0
YYD3_k127_364270_1 tRNA processing K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000459 276.0
YYD3_k127_364270_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007193 244.0
YYD3_k127_364270_3 (AIR) carboxylase K06898 - - 0.0000000005604 68.0
YYD3_k127_3664922_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008169 471.0
YYD3_k127_3664922_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 471.0
YYD3_k127_3664922_2 Phage integrase, N-terminal SAM-like domain K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007945 247.0
YYD3_k127_3664922_3 Transcriptional regulator, LysR - - - 0.0000000000000000000000000000000000000000000000000000002022 207.0
YYD3_k127_3664922_4 protein trimerization - - - 0.000000000000006341 83.0
YYD3_k127_3664922_5 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000001218 79.0
YYD3_k127_3670739_0 Thioredoxin-like - - - 0.000000000000000000000000007676 129.0
YYD3_k127_3670739_1 WD40-like Beta Propeller Repeat - - - 0.000000000000000342 92.0
YYD3_k127_3670739_2 Bacterial transcriptional activator domain - - - 0.0000001304 63.0
YYD3_k127_3710842_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 630.0
YYD3_k127_3710842_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 385.0
YYD3_k127_3710842_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 344.0
YYD3_k127_3710842_3 Dna alkylation repair - - - 0.0000000000000000000000000000000000000000000000000000006204 203.0
YYD3_k127_3710842_4 LVIVD repeat K01179 - 3.2.1.4 0.00001742 58.0
YYD3_k127_3710842_5 Psort location Cytoplasmic, score - - - 0.0003655 51.0
YYD3_k127_3738210_0 von Willebrand factor (vWF) type A domain K07114,K12511 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 311.0
YYD3_k127_3738210_1 Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001177 269.0
YYD3_k127_3738210_2 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000000000000000000000000000000000000000000000000003949 210.0
YYD3_k127_3738210_3 Associated with various cellular activities K03924 - - 0.000000000000000005509 84.0
YYD3_k127_3738210_4 - - - - 0.0000000004433 72.0
YYD3_k127_3738210_5 Tetratricopeptide repeat - - - 0.0001279 54.0
YYD3_k127_3751339_0 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000001811 116.0
YYD3_k127_3760868_0 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006087 459.0
YYD3_k127_3760868_1 Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001761 278.0
YYD3_k127_3760868_2 Cystathionine beta-synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000001178 250.0
YYD3_k127_3760868_3 - - - - 0.000000000000000000000001146 109.0
YYD3_k127_3760868_4 lipolytic protein G-D-S-L family - - - 0.0001868 54.0
YYD3_k127_3766644_0 SAICAR synthetase K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001508 278.0
YYD3_k127_3766644_1 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000001186 243.0
YYD3_k127_3766644_2 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000000000000000002731 204.0
YYD3_k127_3766644_3 TonB-dependent receptor - - - 0.000000000000000000000003036 117.0
YYD3_k127_3766644_4 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000392 101.0
YYD3_k127_3771223_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 3.077e-203 657.0
YYD3_k127_3771223_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 1.365e-200 652.0
YYD3_k127_3771223_2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006998 445.0
YYD3_k127_3771223_3 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007809 259.0
YYD3_k127_3771223_4 Response regulator, receiver K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000005975 235.0
YYD3_k127_3771223_5 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000981 167.0
YYD3_k127_3772335_0 Helix-hairpin-helix class 2 (Pol1 family) motifs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002553 268.0
YYD3_k127_3772335_1 Two component regulator propeller - - - 0.000000003666 70.0
YYD3_k127_3776414_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 548.0
YYD3_k127_3776414_1 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 361.0
YYD3_k127_3776414_2 Protein involved in meta-pathway of phenol degradation - - - 0.00000000000000000000000000000001312 129.0
YYD3_k127_3776414_3 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.000000000000000000000000002093 130.0
YYD3_k127_3782432_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005942 547.0
YYD3_k127_3782432_1 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009458 350.0
YYD3_k127_3782432_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 324.0
YYD3_k127_3782432_3 SurA N-terminal domain K03769 - 5.2.1.8 0.00000000000000000000000000000000000000004847 164.0
YYD3_k127_3782432_4 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000008706 150.0
YYD3_k127_3782432_5 - - - - 0.000000000000000000000872 111.0
YYD3_k127_3785328_0 Protein of unknown function (DUF3604) - - - 9.384e-319 987.0
YYD3_k127_3785328_1 HupE / UreJ protein - - - 0.00000000000000000000003431 104.0
YYD3_k127_3785328_2 PFAM plasmid stabilization system - - - 0.0000000000000001005 86.0
YYD3_k127_3785328_3 SEC-C motif - - - 0.0000002079 59.0
YYD3_k127_3786122_0 Glyceraldehyde-3-phosphate dehydrogenase K00150 - 1.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 439.0
YYD3_k127_3786122_1 gtp cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001566 259.0
YYD3_k127_3786122_2 Protein of unknown function (DUF2723) - - - 0.000000000000000000000000000000000000000000000000000000000002027 231.0
YYD3_k127_3786122_3 Putative cyclase K07130 - 3.5.1.9 0.000000000000000000000000001075 124.0
YYD3_k127_3786122_4 Belongs to the eIF-2B alpha beta delta subunits family - - - 0.00000000000000000000000000283 126.0
YYD3_k127_3786122_5 phosphoesterase RecJ domain protein K00974,K06881 GO:0008150,GO:0040007 2.7.7.72,3.1.13.3,3.1.3.7 0.0000000000000000000000004595 111.0
YYD3_k127_3793630_0 PFAM CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 312.0
YYD3_k127_3793630_1 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000001656 229.0
YYD3_k127_3793630_2 G5 domain protein - - - 0.0000000000000000000000001193 121.0
YYD3_k127_3793630_3 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000002053 82.0
YYD3_k127_3796980_0 carbon monoxide dehydrogenase small subunit K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000003101 208.0
YYD3_k127_3796980_1 CO dehydrogenase flavoprotein K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000001003 207.0
YYD3_k127_3796980_2 3-hydroxyacyl-CoA dehydrogenase K00074 GO:0003674,GO:0003824,GO:0003857,GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0008691,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 1.1.1.157 0.00000000000000000000000000000000000000000000000000006504 211.0
YYD3_k127_3796980_3 Belongs to the thiolase family - - - 0.00000000000000000000000000000000000000003009 160.0
YYD3_k127_3810660_0 slime layer polysaccharide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 448.0
YYD3_k127_3810660_1 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000001336 166.0
YYD3_k127_3810660_2 Male sterility protein - - - 0.0000000000000000000000000000001051 138.0
YYD3_k127_3838809_0 EVE domain - - - 0.0000000000000000000000000000000000000001105 155.0
YYD3_k127_3838809_1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000001253 151.0
YYD3_k127_3838809_2 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000004048 142.0
YYD3_k127_3838809_3 peroxiredoxin activity - - - 0.0000000000000000000000000000000001774 141.0
YYD3_k127_3838809_4 Ser Thr phosphatase family protein K03547 - - 0.000000000000000000000000000000003617 136.0
YYD3_k127_3847368_0 amine dehydrogenase activity - - - 5.024e-244 792.0
YYD3_k127_3847368_1 malic enzyme K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 9.507e-211 687.0
YYD3_k127_3847368_2 Fumarase C C-terminus K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004947 520.0
YYD3_k127_3847368_3 Protease prsW family - - - 0.0000000000000000000000000000000008825 143.0
YYD3_k127_3847368_4 ECF sigma factor K03088 - - 0.000000000000000000000000000001568 129.0
YYD3_k127_3847368_5 pyruvate phosphate dikinase K01007 - 2.7.9.2 0.0000000000000003139 85.0
YYD3_k127_3847368_6 sigma factor antagonist activity K04757,K07315,K17752 - 2.7.11.1,3.1.3.3 0.000000000001807 73.0
YYD3_k127_3847368_8 STAS domain K04749 - - 0.00001024 57.0
YYD3_k127_3851705_0 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 0.00000000000000000000000000000000000000001912 159.0
YYD3_k127_3851705_1 NmrA-like family K00091 - 1.1.1.219 0.00000000000000000000000000000000002095 153.0
YYD3_k127_3851705_2 O-Antigen ligase - - - 0.000002028 60.0
YYD3_k127_3868812_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 8.207e-269 838.0
YYD3_k127_3868812_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007856 359.0
YYD3_k127_3868812_2 Aldo/keto reductase family - - - 0.000000000000000000000000000000005319 131.0
YYD3_k127_3868812_3 - - - - 0.0000000000000000000000000000001481 125.0
YYD3_k127_3877575_0 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000000000001732 197.0
YYD3_k127_3886642_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 462.0
YYD3_k127_3886642_1 Transcriptional regulator - - - 0.00000000000000000001301 96.0
YYD3_k127_3886642_2 Domain of unknown function (DUF4386) - - - 0.000002759 55.0
YYD3_k127_3888800_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 4.332e-254 799.0
YYD3_k127_3888800_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000001251 91.0
YYD3_k127_3888800_2 - - - - 0.00003552 53.0
YYD3_k127_3891045_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261,K00262 - 1.4.1.3,1.4.1.4 6.502e-218 689.0
YYD3_k127_3891045_1 Histidine Phosphotransfer domain - - - 0.00000000000000000000000003671 113.0
YYD3_k127_3891045_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000007395 57.0
YYD3_k127_3893387_0 Transglycosylase K05366 GO:0003674,GO:0005488,GO:0005515,GO:0042802 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 510.0
YYD3_k127_3893387_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 364.0
YYD3_k127_3893387_2 PFAM CMP dCMP deaminase zinc-binding K01489 - 3.5.4.5 0.000000000000005631 78.0
YYD3_k127_3893952_0 - - - - 0.0005135 50.0
YYD3_k127_3906652_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 1.399e-248 785.0
YYD3_k127_3906652_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 6.582e-203 657.0
YYD3_k127_3906652_10 Protein of unknown function (DUF503) K09764 - - 0.000000000003026 70.0
YYD3_k127_3906652_2 Belongs to the peptidase M16 family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 341.0
YYD3_k127_3906652_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000003935 227.0
YYD3_k127_3906652_4 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000000000000004161 203.0
YYD3_k127_3906652_5 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000006536 202.0
YYD3_k127_3906652_6 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000007453 195.0
YYD3_k127_3906652_7 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000002351 169.0
YYD3_k127_3906652_8 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000004236 124.0
YYD3_k127_3906652_9 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000004754 101.0
YYD3_k127_3908216_0 Fumarate reductase flavoprotein C-term K00239 GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0022900,GO:0044237,GO:0045333,GO:0055114 1.3.5.1,1.3.5.4 6.625e-268 838.0
YYD3_k127_3908216_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 478.0
YYD3_k127_3908216_2 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 361.0
YYD3_k127_3908216_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000001636 263.0
YYD3_k127_3908216_4 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000001024 207.0
YYD3_k127_3908216_5 EamA-like transporter family - - - 0.000000000000000000000000000005575 134.0
YYD3_k127_3908216_6 Peptidase M56 - - - 0.0000000000002527 83.0
YYD3_k127_3908216_7 - - - - 0.000000000002345 70.0
YYD3_k127_3908216_8 Preprotein translocase, subunit SecG K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000006294 72.0
YYD3_k127_3908216_9 Putative diguanylate phosphodiesterase - - - 0.0000000000382 71.0
YYD3_k127_3914255_0 COG0076 Glutamate decarboxylase and related PLP-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 402.0
YYD3_k127_3914255_1 Glycosyl transferases group 1 - - - 0.00000000007644 76.0
YYD3_k127_3914422_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009483 488.0
YYD3_k127_3914422_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000772 481.0
YYD3_k127_3914422_2 Methyltransferase domain - - - 0.0000000000000000000000000000006745 138.0
YYD3_k127_3914422_3 Protein export membrane protein - - - 0.0000000000000000000001115 100.0
YYD3_k127_3914422_4 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000001675 114.0
YYD3_k127_3914422_5 Sulfurtransferase - - - 0.0000000000000000118 84.0
YYD3_k127_3914422_6 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000003817 92.0
YYD3_k127_392191_0 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 497.0
YYD3_k127_392191_1 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 354.0
YYD3_k127_392191_10 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.0000001052 64.0
YYD3_k127_392191_2 lipopolysaccharide-transporting ATPase activity K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 309.0
YYD3_k127_392191_3 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 305.0
YYD3_k127_392191_4 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000905 99.0
YYD3_k127_392191_5 PTS system sorbose subfamily IIB component K02745,K02793,K02794 - 2.7.1.191 0.000000000000000001578 96.0
YYD3_k127_392191_6 PTS system, mannose fructose sorbose family, IIA subunit K02793 - 2.7.1.191 0.00000000001152 70.0
YYD3_k127_392191_7 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000002886 63.0
YYD3_k127_392191_8 Lipopolysaccharide-assembly, LptC-related - - - 0.0000000003462 70.0
YYD3_k127_392191_9 PTS system K02795 - - 0.0000001006 63.0
YYD3_k127_3927403_0 Protein of unknown function (DUF1295) - - - 0.000000000000000000001193 96.0
YYD3_k127_3927403_1 extracellular matrix structural constituent - - - 0.0000000001554 75.0
YYD3_k127_3955555_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1150.0
YYD3_k127_3955555_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.249e-241 774.0
YYD3_k127_3955555_2 dolichyl monophosphate biosynthetic process K08591 - 2.3.1.15 0.00000000000000000000000000002217 121.0
YYD3_k127_3955555_3 Phage integrase, N-terminal SAM-like domain K03733,K04763 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000003769 83.0
YYD3_k127_3955800_0 - - - - 0.00008888 55.0
YYD3_k127_3991357_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 426.0
YYD3_k127_3991357_1 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004723 276.0
YYD3_k127_3991357_2 Belongs to the RNA methyltransferase TrmD family K00554,K01770 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000001763 247.0
YYD3_k127_3991357_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000002341 188.0
YYD3_k127_3991357_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000003109 152.0
YYD3_k127_3991357_5 Cobalamin B12-binding K01849 - 5.4.99.2 0.00000000000000000000000000000000004778 136.0
YYD3_k127_3991357_6 Belongs to the UPF0109 family K06960 - - 0.000000000000000000000000001307 114.0
YYD3_k127_3991357_7 ribosome binding K02860 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000001004 109.0
YYD3_k127_3991357_8 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000005302 87.0
YYD3_k127_3991357_9 Uncharacterised protein family UPF0102 K07460 - - 0.0000000000000009663 87.0
YYD3_k127_4006223_0 Glutamate-cysteine ligase family 2(GCS2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000808 625.0
YYD3_k127_4006223_1 Putative esterase K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005848 428.0
YYD3_k127_4006223_2 Belongs to the D-alanine--D-alanine ligase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 389.0
YYD3_k127_4006223_3 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006052 313.0
YYD3_k127_4006223_4 ABC transporter substrate-binding protein - - - 0.000000000001559 81.0
YYD3_k127_4017893_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 3.57e-253 791.0
YYD3_k127_4017893_1 Heme copper-type cytochrome quinol oxidase, subunit K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000963 272.0
YYD3_k127_4017893_2 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000003219 148.0
YYD3_k127_4017893_3 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.00000000000000000000000006777 119.0
YYD3_k127_4017893_4 Heme copper-type cytochrome quinol oxidase subunit 3 K02276 - 1.9.3.1 0.00000000005904 68.0
YYD3_k127_4035047_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 7.675e-291 906.0
YYD3_k127_4035047_1 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 600.0
YYD3_k127_4035047_2 glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 552.0
YYD3_k127_4035047_3 MOFRL family K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009732 338.0
YYD3_k127_4035047_4 haloacid dehalogenase-like hydrolase K07026 - 3.1.3.70 0.0000000000000000000000000000000000000000000000000000000000002017 222.0
YYD3_k127_4035047_5 transmembrane transport - - - 0.000000000000000000000000000000000000000000000000000000000009265 214.0
YYD3_k127_4035047_6 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000000000000000000000000000001796 148.0
YYD3_k127_4039318_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 587.0
YYD3_k127_4039318_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 385.0
YYD3_k127_4039318_2 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009337 248.0
YYD3_k127_4040920_0 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 414.0
YYD3_k127_4040920_1 Polysaccharide biosynthesis protein K12454 - 5.1.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 331.0
YYD3_k127_4040920_2 Histidine kinase K02668,K07710 - 2.7.13.3 0.000000000000000000000000000000000000000000000335 188.0
YYD3_k127_4040920_3 Thioredoxin K03671 - - 0.000000000000000000000000000001081 136.0
YYD3_k127_4040920_4 Evidence 5 No homology to any previously reported sequences K03643 GO:0001530,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0008289,GO:0009279,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044462,GO:0044464,GO:0045229,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071709,GO:0071840,GO:0071944,GO:0097367,GO:1901264 - 0.000000000000000000000001904 109.0
YYD3_k127_4040920_5 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000007751 57.0
YYD3_k127_4045371_0 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000009834 254.0
YYD3_k127_4045371_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000001702 192.0
YYD3_k127_4045371_2 Protein of unknown function (DUF3450) - - - 0.000000000000000000000000000003189 130.0
YYD3_k127_4074483_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 486.0
YYD3_k127_4074483_1 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 433.0
YYD3_k127_4074483_2 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 402.0
YYD3_k127_4074483_3 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 387.0
YYD3_k127_4074483_4 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004401 369.0
YYD3_k127_4074483_5 Coenzyme A transferase K01027,K01028,K01034 - 2.8.3.5,2.8.3.8,2.8.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 335.0
YYD3_k127_4074483_6 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000004726 192.0
YYD3_k127_4074483_7 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.00000000000000000000000000000000000005539 146.0
YYD3_k127_4074483_8 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000005436 144.0
YYD3_k127_4074483_9 cobalamin binding K01849 - 5.4.99.2 0.000000000000000000000000000001561 123.0
YYD3_k127_4074943_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000513 508.0
YYD3_k127_4074943_1 Peptidase family M54 K06974 - - 0.0000000000000000000000000000000000003241 159.0
YYD3_k127_4074943_2 Histidine kinase K02668,K07710 - 2.7.13.3 0.000000000000000000007122 96.0
YYD3_k127_4104260_0 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 386.0
YYD3_k127_4104260_1 Polysaccharide biosynthesis protein K01710,K01784 - 4.2.1.46,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 305.0
YYD3_k127_4104260_2 PFAM glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000009546 105.0
YYD3_k127_4109122_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000305 402.0
YYD3_k127_4109122_1 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000002525 96.0
YYD3_k127_4109122_2 Type IV pilin PilA - - - 0.00002014 52.0
YYD3_k127_4111350_0 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 421.0
YYD3_k127_4111350_1 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000001995 128.0
YYD3_k127_4117685_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 430.0
YYD3_k127_4117685_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000002049 154.0
YYD3_k127_4118993_0 ABC 3 transport family K02075 - - 0.000000000000000000000000000000000000000000000000000000001498 211.0
YYD3_k127_4118993_1 Belongs to the bacterial solute-binding protein 9 family K02077 - - 0.000000000000000000000000000000000000000000000001305 192.0
YYD3_k127_4118993_2 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.00000000000000000000000000000000006305 147.0
YYD3_k127_4118993_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000005787 86.0
YYD3_k127_4118993_4 Tfp pilus assembly protein FimV - - - 0.000000000000000009047 95.0
YYD3_k127_4118993_5 ATP-dependent helicase nuclease subunit A K16898 - 3.6.4.12 0.00000000004025 69.0
YYD3_k127_4125387_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 5.716e-249 781.0
YYD3_k127_4125387_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002669 288.0
YYD3_k127_4125387_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000006617 236.0
YYD3_k127_4125387_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000009423 218.0
YYD3_k127_4125387_4 endoribonuclease K09022 - 3.5.99.10 0.000000000000000000000000000000004459 133.0
YYD3_k127_4125387_5 Subtilase family K08651 - 3.4.21.66 0.00000000000001147 87.0
YYD3_k127_4125387_6 - - - - 0.0000000001883 72.0
YYD3_k127_4151776_0 response regulator K02667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008102 392.0
YYD3_k127_4151776_1 Electron transfer flavoprotein domain K03522,K22432 - 1.3.1.108 0.0000000000000000000000000000000000000000000000000000005183 194.0
YYD3_k127_4151776_2 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000001328 178.0
YYD3_k127_4151776_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000002979 157.0
YYD3_k127_4151776_4 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000001504 125.0
YYD3_k127_4165482_0 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 423.0
YYD3_k127_4165482_1 PhoQ Sensor - - - 0.000000000000000000000001509 107.0
YYD3_k127_4165482_2 Glycosyl transferases group 1 - - - 0.00007122 55.0
YYD3_k127_4168111_0 potassium ion transport K07085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 528.0
YYD3_k127_4168111_1 Uncharacterized protein conserved in bacteria (DUF2252) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007053 505.0
YYD3_k127_4168111_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 370.0
YYD3_k127_4192482_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 471.0
YYD3_k127_4192482_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000001827 267.0
YYD3_k127_4192482_2 Competence-damaged protein K03742 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000005225 269.0
YYD3_k127_4192482_3 LigT like Phosphoesterase K01975 - 3.1.4.58 0.0000000000000000000000006692 116.0
YYD3_k127_4192482_4 PFAM Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.000000000000000000000001614 111.0
YYD3_k127_4192482_5 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000477 81.0
YYD3_k127_4192482_6 Regulatory protein RecX K03565 - - 0.0004316 51.0
YYD3_k127_4194139_0 lipolytic protein G-D-S-L family K00612 - - 0.00000000000000000000000000000000000000000001531 183.0
YYD3_k127_4194139_1 GIY-YIG type nucleases (URI domain) K02342 - 2.7.7.7 0.00000000000000004727 95.0
YYD3_k127_4194139_2 LVIVD repeat K01179 - 3.2.1.4 0.000002238 51.0
YYD3_k127_4204784_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000001648 123.0
YYD3_k127_4204784_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000005279 108.0
YYD3_k127_4204784_2 Thioredoxin-like - - - 0.00000005877 64.0
YYD3_k127_4239325_0 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000004565 103.0
YYD3_k127_4241124_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000000000000000000000000000000000000003207 170.0
YYD3_k127_4241124_1 LVIVD repeat K01179 - 3.2.1.4 0.000000000000001954 91.0
YYD3_k127_4261933_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 1.715e-200 634.0
YYD3_k127_4261933_1 Lysin motif K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005625 286.0
YYD3_k127_4261933_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000416 247.0
YYD3_k127_4261933_3 - - - - 0.000000000000000000000000000000000000000007681 166.0
YYD3_k127_4261933_4 COG2059 Chromate transport protein ChrA K07240 - - 0.000000000000000000000000000000000001017 145.0
YYD3_k127_4261933_5 ABC-type uncharacterized transport system K01992 - - 0.000000000000000000000000000000000004931 158.0
YYD3_k127_4261933_6 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000006507 148.0
YYD3_k127_4262575_0 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006033 267.0
YYD3_k127_4262575_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000002266 161.0
YYD3_k127_4295893_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 458.0
YYD3_k127_4295893_1 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003262 372.0
YYD3_k127_4295893_2 PFAM Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000006483 189.0
YYD3_k127_4309917_0 Antioxidant, AhpC TSA family - - - 0.00000000006456 72.0
YYD3_k127_4309917_1 Peptidase, S41 family K03797 - 3.4.21.102 0.0005849 51.0
YYD3_k127_4310432_0 Sugar ABC transporter permease K10109,K15770,K15771 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 529.0
YYD3_k127_4310432_1 Binding-protein-dependent transport system inner membrane component K10110,K15772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 463.0
YYD3_k127_4310432_2 C-terminal binding-module, SLH-like, of glucodextranase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 353.0
YYD3_k127_4310432_3 aromatic amino acid beta-eliminating lyase threonine aldolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 297.0
YYD3_k127_4310432_4 - - - - 0.00000000000000000000000000000000000000000000000000003021 212.0
YYD3_k127_4312697_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 1.258e-215 677.0
YYD3_k127_4312697_2 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000004725 102.0
YYD3_k127_4312697_3 oligosaccharyl transferase activity - - - 0.0000007481 62.0
YYD3_k127_4314817_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 8.771e-310 964.0
YYD3_k127_4314817_1 PFAM Cysteine-rich domain K08264 - 1.8.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 378.0
YYD3_k127_4329920_0 4-amino-4-deoxy-L-arabinose transferase activity K02277 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006289 329.0
YYD3_k127_4329920_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000007529 113.0
YYD3_k127_4329920_2 guanyl-nucleotide exchange factor activity - - - 0.000000005568 66.0
YYD3_k127_4338335_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007343 544.0
YYD3_k127_4338335_1 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001327 263.0
YYD3_k127_4338335_2 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004431 287.0
YYD3_k127_4338335_3 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000001689 259.0
YYD3_k127_4338335_4 Catalyzes the dephosphorylation of D,L-glyceraldehyde 3- phosphate in vitro K07025 - - 0.000000000000000000000000000003663 128.0
YYD3_k127_4338335_5 - - - - 0.000000000000000000000001108 106.0
YYD3_k127_4338335_6 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000003452 75.0
YYD3_k127_4338335_7 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.0004634 50.0
YYD3_k127_4338335_8 Tetratricopeptide repeat - - - 0.0009012 52.0
YYD3_k127_4338913_0 - - - - 0.0000000000000000000004014 112.0
YYD3_k127_4338913_1 Domain of unknown function (DUF305) - - - 0.000000000000000000006326 100.0
YYD3_k127_4339984_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 346.0
YYD3_k127_4339984_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000001073 219.0
YYD3_k127_4339984_2 cytochrome complex assembly - - - 0.000000000000000000000000000000000000001366 157.0
YYD3_k127_4344149_0 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006362 434.0
YYD3_k127_4344149_1 PFAM binding-protein-dependent transport systems inner membrane component K02047 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 382.0
YYD3_k127_4344149_2 Binding-protein-dependent transport system inner membrane component K02046,K15496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 319.0
YYD3_k127_4344149_3 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000001388 162.0
YYD3_k127_4345994_0 PFAM Ribonuclease BN-like family K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 288.0
YYD3_k127_4345994_1 - - - - 0.0000000000000005907 86.0
YYD3_k127_4345994_2 - - - - 0.000000000000001053 79.0
YYD3_k127_4345994_3 - - - - 0.000000000000001063 85.0
YYD3_k127_4362216_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 446.0
YYD3_k127_4362216_1 Bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.00000000000000000000000001858 127.0
YYD3_k127_4362216_2 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000001012 115.0
YYD3_k127_4362216_3 PTS HPr component phosphorylation site K11189 - - 0.000000000000000000002641 96.0
YYD3_k127_4373005_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 401.0
YYD3_k127_4373005_1 Phosphoesterase, PA-phosphatase related - - - 0.00000000000000000000000000000000000000000008501 181.0
YYD3_k127_4373005_2 Belongs to the UPF0434 family K09791 - - 0.0000000000000000188 84.0
YYD3_k127_4373005_3 Peptidase C25 - - - 0.00001556 58.0
YYD3_k127_4373322_0 Amp-dependent synthetase and ligase K00797,K01897 - 2.5.1.16,6.2.1.3 2.125e-295 964.0
YYD3_k127_4373322_1 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004572 334.0
YYD3_k127_4373322_2 citrate synthase K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000245 306.0
YYD3_k127_4373322_3 LD-carboxypeptidase K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000006331 220.0
YYD3_k127_4377802_0 Serine threonine protein kinase K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003051 302.0
YYD3_k127_4377802_1 Poly (ADP-ribose) glycohydrolase (PARG) - - - 0.0000000000000000000000000000005625 126.0
YYD3_k127_4377802_2 FR47-like protein - - - 0.00000000000000000000000001983 113.0
YYD3_k127_4384095_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 2.149e-251 789.0
YYD3_k127_4384095_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016625,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0047553,GO:0055114,GO:0071704,GO:0071944,GO:0072350 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 448.0
YYD3_k127_4384095_2 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000007122 64.0
YYD3_k127_4397312_0 Zn-dependent proteases and their inactivated homologs K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001946 302.0
YYD3_k127_4397312_1 amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000003217 190.0
YYD3_k127_4397312_2 Putative modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000004424 190.0
YYD3_k127_4397312_3 Glycerophosphoryl diester phosphodiesterase family - - - 0.000000000000000000000000000000000000000002808 171.0
YYD3_k127_4397312_4 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000004659 145.0
YYD3_k127_4397312_5 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000002895 151.0
YYD3_k127_4397892_0 lactoylglutathione lyase activity - - - 0.000000000000000000000000000000003827 132.0
YYD3_k127_440592_0 ATP:ADP antiporter activity K01932,K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009938 470.0
YYD3_k127_440592_1 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.0000000000000000000002271 109.0
YYD3_k127_440592_2 SnoaL-like domain - - - 0.0000000000000005241 79.0
YYD3_k127_440592_3 antisigma factor binding K04749 - - 0.000005268 57.0
YYD3_k127_4418601_0 Bacterial Ig-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 424.0
YYD3_k127_4418601_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000009038 164.0
YYD3_k127_4423634_0 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000003148 207.0
YYD3_k127_4427027_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005371 414.0
YYD3_k127_4427027_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000002303 177.0
YYD3_k127_4427027_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000001867 169.0
YYD3_k127_4427027_3 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000005895 118.0
YYD3_k127_4427027_4 PFAM Diacylglycerol kinase, catalytic - - - 0.000000000000000000009809 104.0
YYD3_k127_4427027_5 - - - - 0.000004751 59.0
YYD3_k127_446096_0 Alanine dehydrogenase/PNT, N-terminal domain K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009781 346.0
YYD3_k127_446096_1 PFAM RNA binding S1 domain protein K02945 - - 0.0000001373 60.0
YYD3_k127_446096_2 Domain of unknown function (DUF4154) - - - 0.0000003536 60.0
YYD3_k127_4467299_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 8.887e-297 936.0
YYD3_k127_4467299_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 335.0
YYD3_k127_4467299_2 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002113 279.0
YYD3_k127_4467299_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002788 251.0
YYD3_k127_4467299_4 Belongs to the sigma-70 factor family K02405 - - 0.0000000000000000000000000000000000000000000000000000000000004823 220.0
YYD3_k127_4467299_5 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000001727 213.0
YYD3_k127_4467299_6 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000000000000000001128 192.0
YYD3_k127_4467299_7 translation initiation factor activity - - - 0.00000000000000000000003479 114.0
YYD3_k127_4487963_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000000000005655 136.0
YYD3_k127_4487963_1 rhamnulose-1-phosphate aldolase alcohol dehydrogenase - - - 0.0000000000002517 74.0
YYD3_k127_4487963_2 CAAX protease self-immunity K07052 - - 0.00003862 53.0
YYD3_k127_4487963_3 exo-alpha-(2->6)-sialidase activity K01186 GO:0001573,GO:0003674,GO:0003824,GO:0004308,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006687,GO:0006689,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0016020,GO:0016042,GO:0016052,GO:0016787,GO:0016798,GO:0016997,GO:0019377,GO:0030149,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046466,GO:0046479,GO:0046514,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509 3.2.1.18 0.0001942 53.0
YYD3_k127_4501954_0 PFAM MgsA AAA ATPase C terminal K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 413.0
YYD3_k127_4501954_1 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 342.0
YYD3_k127_4501954_2 mannose-ethanolamine phosphotransferase activity - - - 0.00000004386 66.0
YYD3_k127_4516653_0 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000001629 136.0
YYD3_k127_4516653_1 COG1555 DNA uptake protein and related DNA-binding proteins - - - 0.000000000000000007306 91.0
YYD3_k127_4521498_0 GTP-binding protein TypA K06207 - - 2.533e-303 940.0
YYD3_k127_4521498_1 - - - - 0.000000000000000006975 87.0
YYD3_k127_452781_0 BNR Asp-box repeat - - - 3.526e-216 702.0
YYD3_k127_452781_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000425 339.0
YYD3_k127_452781_2 peptidase - - - 0.000000000000000000000004227 115.0
YYD3_k127_453239_0 unfolded protein binding K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0018995,GO:0019219,GO:0019222,GO:0020003,GO:0022607,GO:0030430,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043531,GO:0043656,GO:0043657,GO:0043933,GO:0044085,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0065010,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 3.382e-294 916.0
YYD3_k127_453239_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 506.0
YYD3_k127_453239_2 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 320.0
YYD3_k127_453239_3 Protein of unknown function (DUF2400) - - - 0.0000000000000000000000000000000000000000000000000000000000002667 220.0
YYD3_k127_453239_4 Domain of unknown function (DUF1844) - - - 0.00000000001849 72.0
YYD3_k127_4550005_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 5.647e-194 624.0
YYD3_k127_4550005_1 FIST C domain K01255,K01259 GO:0001073,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006351,GO:0006355,GO:0006508,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009056,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016787,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0042150,GO:0043170,GO:0043171,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043244,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0097718,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1903506,GO:2000112,GO:2001141 3.4.11.1,3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009942 410.0
YYD3_k127_4550005_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009262 393.0
YYD3_k127_4550005_3 Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009893,GO:0009987,GO:0019216,GO:0019222,GO:0019747,GO:0031323,GO:0031325,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045828,GO:0045834,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0080090,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000009293 249.0
YYD3_k127_4550005_4 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000000000000000001463 135.0
YYD3_k127_4550005_5 Redoxin - - - 0.000000000001308 80.0
YYD3_k127_4550005_6 Helix-hairpin-helix domain K02347 - - 0.0000122 48.0
YYD3_k127_4578016_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004664 478.0
YYD3_k127_4578016_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 413.0
YYD3_k127_4578016_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000003115 122.0
YYD3_k127_4578016_3 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.00000000000000000000000002675 115.0
YYD3_k127_4578016_4 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0000287,GO:0000910,GO:0000921,GO:0000935,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0022607,GO:0030428,GO:0031106,GO:0032153,GO:0032155,GO:0032185,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0045787,GO:0046872,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051258,GO:0051301,GO:0051726,GO:0065003,GO:0065007,GO:0070925,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000001081 73.0
YYD3_k127_4580986_0 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 387.0
YYD3_k127_4580986_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000009957 190.0
YYD3_k127_4580986_2 Domain of unknown function (DUF4331) - - - 0.00000000000000000000000000000000000000000001507 171.0
YYD3_k127_4580986_3 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000002008 167.0
YYD3_k127_4580986_4 Methyltransferase domain - - - 0.0000000000000000000000008135 115.0
YYD3_k127_4580986_5 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.000001741 53.0
YYD3_k127_4580986_6 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.00001434 48.0
YYD3_k127_4600478_0 Trypsin-like serine protease K01337 - 3.4.21.50 0.000000000000000000000002464 119.0
YYD3_k127_4600478_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000008573 77.0
YYD3_k127_4600478_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000161 71.0
YYD3_k127_4600478_3 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0009015 46.0
YYD3_k127_4617301_0 CHAT domain - - - 0.0000000000000001759 94.0
YYD3_k127_4617301_1 DNA-templated transcription, initiation K03088 - - 0.000000000002038 68.0
YYD3_k127_4621229_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 317.0
YYD3_k127_4621229_1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000002698 118.0
YYD3_k127_4621229_2 curli production assembly transport component CsgG K04087 - - 0.000000000000001304 90.0
YYD3_k127_4621229_3 C4-type zinc ribbon domain K07164 - - 0.00000003742 61.0
YYD3_k127_4624247_0 elongation factor G K02355 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0030312,GO:0044237,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 471.0
YYD3_k127_4624247_1 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 304.0
YYD3_k127_4624247_2 ABC transporter K06147,K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000287 246.0
YYD3_k127_4624247_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000003436 132.0
YYD3_k127_4624247_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009378,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360 3.6.4.12 0.000000000000000000000000000004768 133.0
YYD3_k127_4625647_0 Lamin Tail Domain - - - 0.000000000000001459 91.0
YYD3_k127_4628194_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005444 476.0
YYD3_k127_4628194_1 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008469 273.0
YYD3_k127_4628194_2 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000285 227.0
YYD3_k127_4628194_3 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000001497 205.0
YYD3_k127_4628194_4 ABC-type transport system involved in multi-copper enzyme maturation - - - 0.00000000000000000000004113 110.0
YYD3_k127_4628194_5 Pilus assembly protein, PilO K02664 - - 0.00000000000000000005033 99.0
YYD3_k127_4628194_6 His Kinase A (phosphoacceptor) domain - - - 0.0000000000009162 72.0
YYD3_k127_4628194_7 Tetratricopeptide repeat - - - 0.0000000001408 72.0
YYD3_k127_4628194_8 COG3166 Tfp pilus assembly protein PilN K02663 - - 0.00000002202 64.0
YYD3_k127_4628194_9 Prokaryotic N-terminal methylation motif K02650 - - 0.0000002931 62.0
YYD3_k127_4651958_0 PFAM sigma-54 factor interaction domain-containing protein K11917 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005288 465.0
YYD3_k127_4651958_1 COG0624, acetylornithine deacetylase succinyl-diaminopimelate desuccinylase and related deacylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008438 435.0
YYD3_k127_4651958_2 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 393.0
YYD3_k127_4651958_3 8-amino-7-oxononanoate synthase activity K00652 - 2.3.1.47 0.0003852 45.0
YYD3_k127_4653399_0 deaminase K01493 - 3.5.4.12 0.000000000000000000000000000000000000000000000000000000000000000000008892 238.0
YYD3_k127_4653399_1 serine-type endopeptidase activity K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000001539 189.0
YYD3_k127_4653399_2 DNA binding domain, excisionase family - - - 0.000006265 54.0
YYD3_k127_4672837_0 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004408 384.0
YYD3_k127_4672837_1 - - - - 0.0000000000000000000000004311 111.0
YYD3_k127_4672837_2 - - - - 0.00000000000000000000005263 110.0
YYD3_k127_4672837_3 3-beta hydroxysteroid dehydrogenase isomerase - - - 0.000000000000000000001845 102.0
YYD3_k127_4672837_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides - - - 0.0000000000000007796 92.0
YYD3_k127_4679120_0 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 509.0
YYD3_k127_4679120_1 extracellular matrix structural constituent - - - 0.000000000000002943 80.0
YYD3_k127_4684127_0 Participates in both transcription termination and antitermination K02600 GO:0001000,GO:0001121,GO:0001125,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074 375.0
YYD3_k127_4684127_1 Peptidase M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000006225 235.0
YYD3_k127_4684127_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000004524 103.0
YYD3_k127_4684127_3 SprA protein - - - 0.00000000001539 78.0
YYD3_k127_4689457_0 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 354.0
YYD3_k127_4689457_1 TOBE domain K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000001021 249.0
YYD3_k127_4689457_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000001039 201.0
YYD3_k127_4689457_3 peptide catabolic process - - - 0.0000000000000000000000000000000008404 149.0
YYD3_k127_4689457_4 Bacterial extracellular solute-binding protein K02020 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0042597,GO:0043167,GO:0043168,GO:0044464 - 0.00000000000000000000000000000005315 136.0
YYD3_k127_4689457_5 extracellular matrix structural constituent - - - 0.0000009146 61.0
YYD3_k127_4701962_0 aconitate hydratase K01681 - 4.2.1.3 3.71e-321 1000.0
YYD3_k127_4701962_1 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000007337 152.0
YYD3_k127_4701962_2 enzyme binding K00567,K07443 - 2.1.1.63 0.000000000000000000000000000006746 124.0
YYD3_k127_4701962_3 Major pilin protein fimA - - - 0.00003749 53.0
YYD3_k127_4704514_0 Urocanase C-terminal domain K01712 - 4.2.1.49 5.95e-253 796.0
YYD3_k127_4704514_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 4.737e-209 669.0
YYD3_k127_4704514_2 helicase involved in DNA repair and perhaps also replication K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 338.0
YYD3_k127_4704514_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000001355 222.0
YYD3_k127_4704514_4 Uncharacterized conserved protein (DUF2304) K09153 - - 0.0000002825 59.0
YYD3_k127_4704514_5 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.0002928 51.0
YYD3_k127_4711074_0 translation release factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007599 392.0
YYD3_k127_4711074_1 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 340.0
YYD3_k127_47179_0 TIGRFAM glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009197 387.0
YYD3_k127_47179_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001252 235.0
YYD3_k127_47179_2 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000001421 210.0
YYD3_k127_47179_3 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000001232 145.0
YYD3_k127_47179_4 Ferredoxin - - - 0.000000000000005973 79.0
YYD3_k127_47179_5 Evidence 5 No homology to any previously reported sequences - - - 0.000000008896 66.0
YYD3_k127_4730808_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 454.0
YYD3_k127_4730808_1 Bacterial extracellular solute-binding protein, family 7 K11688,K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 300.0
YYD3_k127_4730808_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000008951 146.0
YYD3_k127_4730808_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000002581 113.0
YYD3_k127_4738784_0 peptidase activity, acting on L-amino acid peptides K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000002719 226.0
YYD3_k127_4738784_1 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000000000000000000000000007812 221.0
YYD3_k127_4738784_2 Iron-sulfur cluster-binding domain - - - 0.0000000000000002705 81.0
YYD3_k127_4738784_3 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.000000005419 57.0
YYD3_k127_4740110_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000001574 226.0
YYD3_k127_4740110_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000002021 177.0
YYD3_k127_4740110_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000025 124.0
YYD3_k127_4740110_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.000000000000000000000000003705 114.0
YYD3_k127_4740110_4 Belongs to the LarC family K09121 - 4.99.1.12 0.0003777 48.0
YYD3_k127_4806717_0 RNA recognition motif - - - 0.0000000000000000000000000000003093 126.0
YYD3_k127_4806717_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000944 127.0
YYD3_k127_4806717_2 PAP2 superfamily - - - 0.0000000000000000002828 98.0
YYD3_k127_4806717_3 - - - - 0.000000000000008676 75.0
YYD3_k127_4806717_4 Domain of unknown function (DUF4143) K07133 - - 0.0000000008652 61.0
YYD3_k127_4809800_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 7.078e-234 749.0
YYD3_k127_4809800_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 348.0
YYD3_k127_4809800_10 Peptidase M23 K21471 - - 0.0000000000000000000000000000000000000001956 166.0
YYD3_k127_4809800_11 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000007375 154.0
YYD3_k127_4809800_12 MoaE protein K03635 - 2.8.1.12 0.0000000000000000000000000006171 117.0
YYD3_k127_4809800_13 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000004276 107.0
YYD3_k127_4809800_14 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.00000000000000000002393 104.0
YYD3_k127_4809800_15 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000000000000008526 82.0
YYD3_k127_4809800_16 pfkB family carbohydrate kinase - - - 0.00000000001941 74.0
YYD3_k127_4809800_17 Subtilase family - - - 0.0000000001104 76.0
YYD3_k127_4809800_18 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03635,K21142 - 2.8.1.12 0.0000000001715 69.0
YYD3_k127_4809800_19 S4 RNA-binding domain - GO:0008150,GO:0040007 - 0.0000000009147 65.0
YYD3_k127_4809800_2 protein import K08651 - 3.4.21.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 318.0
YYD3_k127_4809800_20 polysaccharide biosynthetic process - - - 0.000000001256 71.0
YYD3_k127_4809800_21 Subtilase family - - - 0.000001036 51.0
YYD3_k127_4809800_3 uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000003223 252.0
YYD3_k127_4809800_4 TIGRFAM hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000125 206.0
YYD3_k127_4809800_5 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000007348 201.0
YYD3_k127_4809800_6 Phosphonate ABC transporter ATP-binding protein K09812 - - 0.0000000000000000000000000000000000000000000000004426 186.0
YYD3_k127_4809800_7 PSP1 C-terminal conserved region - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000006024 178.0
YYD3_k127_4809800_8 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000008655 176.0
YYD3_k127_4809800_9 peptidase activity, acting on L-amino acid peptides K01337,K05994,K20276 - 3.4.11.10,3.4.21.50 0.00000000000000000000000000000000000000002229 176.0
YYD3_k127_4817146_0 Ribosomal protein S1 K02945,K03527,K12132 GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010 1.17.7.4,2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008441 498.0
YYD3_k127_4817146_1 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000009906 224.0
YYD3_k127_4817146_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000006742 201.0
YYD3_k127_4823096_0 Heat shock protein DnaJ domain protein - - - 0.00002123 55.0
YYD3_k127_4823096_1 - K21449 - - 0.0009744 52.0
YYD3_k127_4846137_0 LmbE family - - - 0.00000000000000000000004769 100.0
YYD3_k127_4846137_1 COG2931, RTX toxins and related Ca2 -binding proteins K20276 - - 0.0000000000000000000001168 113.0
YYD3_k127_4846137_2 Acetyltransferase (GNAT) family - - - 0.0000000000002791 80.0
YYD3_k127_4852382_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 8.888e-320 993.0
YYD3_k127_4852382_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030312,GO:0030955,GO:0031004,GO:0031224,GO:0031226,GO:0031420,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 496.0
YYD3_k127_4852382_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.00000000000000000000591 94.0
YYD3_k127_4882147_0 Conserved hypothetical protein (DUF2461) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001576 256.0
YYD3_k127_4882147_1 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000000000000000000000000003581 154.0
YYD3_k127_4882147_2 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000001119 143.0
YYD3_k127_4882147_3 cellulase activity - - - 0.000000000000000000003887 108.0
YYD3_k127_4882147_4 Golgi phosphoprotein 3 (GPP34) - - - 0.00000000000000000006295 104.0
YYD3_k127_4882147_6 Arc-like DNA binding domain - - - 0.000000003675 61.0
YYD3_k127_4887437_0 diguanylate cyclase - - - 0.00000000000000000000000000002876 132.0
YYD3_k127_4890465_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006171 432.0
YYD3_k127_4890465_1 alpha beta K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 398.0
YYD3_k127_4890465_2 - - - - 0.0000000000000000000000000000000000000000000000000006747 193.0
YYD3_k127_4890465_3 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000002174 190.0
YYD3_k127_4896799_0 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000001791 270.0
YYD3_k127_4896799_1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein - - - 0.000001717 61.0
YYD3_k127_4904225_0 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008803 477.0
YYD3_k127_4904225_1 Pyridoxal-phosphate dependent enzyme K01697 - 4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 477.0
YYD3_k127_4904225_2 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000615 211.0
YYD3_k127_4904225_3 nucleotide catabolic process - - - 0.000000000000000000000000000000000009269 151.0
YYD3_k127_4904225_4 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000008015 106.0
YYD3_k127_4904225_5 HEPN domain K00392 - 1.8.7.1 0.0000000008219 68.0
YYD3_k127_4914856_0 NADH-quinone oxidoreductase chain L K00341 - 1.6.5.3 2.394e-204 661.0
YYD3_k127_4914856_1 NAD binding K00333,K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 495.0
YYD3_k127_4914856_10 NADH dehydrogenase (ubiquinone) activity K00330,K05574 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.000000000000000000000000000000000453 136.0
YYD3_k127_4914856_11 PFAM NADH-ubiquinone plastoquinone oxidoreductase, chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000001371 139.0
YYD3_k127_4914856_12 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000001536 132.0
YYD3_k127_4914856_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000001103 119.0
YYD3_k127_4914856_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 466.0
YYD3_k127_4914856_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000441 359.0
YYD3_k127_4914856_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000006396 268.0
YYD3_k127_4914856_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000005549 235.0
YYD3_k127_4914856_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000004394 165.0
YYD3_k127_4914856_7 SpoU rRNA Methylase family - - - 0.00000000000000000000000000000000000000005569 158.0
YYD3_k127_4914856_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03615,K05580 - 1.6.5.3 0.0000000000000000000000000000000000003964 147.0
YYD3_k127_4914856_9 protein phosphatase 2C domain protein K20074 GO:0000287,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004647,GO:0004721,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0030145,GO:0030312,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043392,GO:0043412,GO:0043549,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045859,GO:0045936,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 3.1.3.16 0.0000000000000000000000000000000003769 142.0
YYD3_k127_4915609_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 581.0
YYD3_k127_4915609_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 527.0
YYD3_k127_4915609_2 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.00000000000000000000001383 115.0
YYD3_k127_4917912_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 1.229e-195 621.0
YYD3_k127_4917912_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000001237 269.0
YYD3_k127_4929010_0 Belongs to the UPF0219 family K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005359 447.0
YYD3_k127_4929010_1 PFAM Thiolase K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 437.0
YYD3_k127_4929010_2 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000000000000000002677 133.0
YYD3_k127_4929010_3 HMGL-like K01640 - 4.1.3.4 0.000001371 51.0
YYD3_k127_4935493_0 Belongs to the PEP-utilizing enzyme family K01006,K22424 - 2.7.3.13,2.7.9.1 0.0 1037.0
YYD3_k127_4935493_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001383 258.0
YYD3_k127_4935493_2 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.00000000005669 73.0
YYD3_k127_4936647_0 PFAM ATP-binding region, ATPase domain protein K07651 - 2.7.13.3 0.00000000000000000000000000000000000000001068 166.0
YYD3_k127_4936647_1 - - - - 0.00000000000000000000000000000005551 134.0
YYD3_k127_4936647_2 DinB family - - - 0.00000000000000000000000000000007019 131.0
YYD3_k127_4942929_0 Uncharacterized protein conserved in bacteria (DUF2344) - - - 4.612e-200 657.0
YYD3_k127_4942929_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000001306 194.0
YYD3_k127_4942929_2 LVIVD repeat - - - 0.00000000000000000000005115 112.0
YYD3_k127_4942929_3 LVIVD repeat K01179 - 3.2.1.4 0.00007601 50.0
YYD3_k127_4947327_0 Major facilitator Superfamily K08162,K08226,K16211 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 473.0
YYD3_k127_4947327_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 434.0
YYD3_k127_4947327_2 Belongs to the serpin family K13963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004346 355.0
YYD3_k127_4947327_3 PFAM Endonuclease Exonuclease phosphatase K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001383 286.0
YYD3_k127_4947327_4 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000002112 132.0
YYD3_k127_4947327_5 PFAM Uncharacterised BCR, COG1649 - - - 0.0000001478 64.0
YYD3_k127_5000962_0 ferrous iron transmembrane transporter activity K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 578.0
YYD3_k127_5000962_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975,K20427 - 2.7.7.27,2.7.7.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003499 420.0
YYD3_k127_5000962_10 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000005831 198.0
YYD3_k127_5000962_11 iron ion homeostasis K03709,K04758 - - 0.000000000000000000000000000000000000000000001397 176.0
YYD3_k127_5000962_12 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000006278 148.0
YYD3_k127_5000962_13 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000001068 132.0
YYD3_k127_5000962_14 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000002032 126.0
YYD3_k127_5000962_15 PFAM Phenazine biosynthesis PhzC PhzF protein - - - 0.0000000000000000000000007198 115.0
YYD3_k127_5000962_16 Peptidase M14, carboxypeptidase A K05996 - 3.4.17.18 0.000000000000743 79.0
YYD3_k127_5000962_17 Domain of unknown function (DUF1844) - - - 0.000000000003076 72.0
YYD3_k127_5000962_18 Subtilase family - - - 0.0000001343 63.0
YYD3_k127_5000962_2 NmrA-like family K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 407.0
YYD3_k127_5000962_3 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 396.0
YYD3_k127_5000962_4 Belongs to the bacterial plant glucose-1-phosphate adenylyltransferase family K00975,K20427 - 2.7.7.27,2.7.7.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 354.0
YYD3_k127_5000962_5 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 353.0
YYD3_k127_5000962_6 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001516 295.0
YYD3_k127_5000962_7 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000000000000000000000004058 241.0
YYD3_k127_5000962_8 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000005598 235.0
YYD3_k127_5000962_9 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000005425 210.0
YYD3_k127_5010849_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 342.0
YYD3_k127_5010849_1 - - - - 0.000000000000000000000000000000000000000000000000000000002861 203.0
YYD3_k127_5010849_2 Belongs to the UPF0403 family - - - 0.0000000000000000000000000000000000000000007098 169.0
YYD3_k127_5010849_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 GO:0003674,GO:0003824,GO:0008110,GO:0008483,GO:0016740,GO:0016769 2.6.1.9 0.000000000000000000000000002988 115.0
YYD3_k127_5010849_5 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000005443 78.0
YYD3_k127_5030318_0 PFAM amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 385.0
YYD3_k127_5030318_1 Protein of unknown function (DUF1016) - - - 0.000000000000000000000000002791 115.0
YYD3_k127_5030318_2 Helix-turn-helix domain - - - 0.0000344 48.0
YYD3_k127_5036408_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 477.0
YYD3_k127_5054574_0 transposition K07497 - - 0.000000000000000000000000000000000000000000003455 177.0
YYD3_k127_5054574_1 Integrase - - - 0.00000000000000000000000000000000000000001468 158.0
YYD3_k127_5054574_2 Integrase - - - 0.00000000000000000000000000001003 121.0
YYD3_k127_5054574_3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000007572 76.0
YYD3_k127_5054574_4 PFAM type III restriction protein res subunit - - - 0.0005888 46.0
YYD3_k127_5069906_0 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000126 217.0
YYD3_k127_5069906_1 - - - - 0.000000000001168 81.0
YYD3_k127_5102924_0 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 403.0
YYD3_k127_5102924_1 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 372.0
YYD3_k127_5102924_2 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 367.0
YYD3_k127_5102924_3 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042,K17468 - 2.9.1.1,4.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002323 347.0
YYD3_k127_5102924_4 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 314.0
YYD3_k127_5102924_5 ABC transporter, ATP-binding protein K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 293.0
YYD3_k127_5134615_0 PFAM Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004731 303.0
YYD3_k127_5134615_1 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000005579 245.0
YYD3_k127_5134615_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000003359 196.0
YYD3_k127_5134615_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000001117 131.0
YYD3_k127_5134615_4 Polymer-forming cytoskeletal - - - 0.0000006942 58.0
YYD3_k127_5139199_0 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000006198 218.0
YYD3_k127_5139199_1 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.0000000000000000000000000000000000000000000000000000004879 204.0
YYD3_k127_5139199_2 ABC transporter K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000005731 199.0
YYD3_k127_5139199_3 thiolester hydrolase activity K06889 - - 0.00004242 55.0
YYD3_k127_5150088_0 Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 418.0
YYD3_k127_5150088_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 365.0
YYD3_k127_5150088_2 4 iron, 4 sulfur cluster binding K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 295.0
YYD3_k127_5150088_3 Thiamine-binding protein - - - 0.000000000000000000000000000000000000000415 154.0
YYD3_k127_5150088_4 4Fe-4S dicluster domain K11473 - - 0.0000000000000000000000000000002426 130.0
YYD3_k127_5150088_5 thioesterase K07107 - - 0.0000000000000000000000000000004466 126.0
YYD3_k127_5150088_6 Glycine cleavage H-protein - - - 0.000000000000000000001288 104.0
YYD3_k127_5150088_7 Glycine cleavage H-protein - - - 0.0000000000008094 77.0
YYD3_k127_5150088_8 Thiol-disulfide oxidoreductase which is required in disulfide reduction during c-type cytochrome synthesis. May accept reducing equivalents from CcdA, leading to breakage of disulfide bonds in apocytochrome c - GO:0008150,GO:0009987,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043933,GO:0044085,GO:0065003,GO:0071840 - 0.0000007834 58.0
YYD3_k127_5153681_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1215.0
YYD3_k127_5153681_1 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003428 365.0
YYD3_k127_5153681_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000001465 78.0
YYD3_k127_5153681_3 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.0000000000005231 78.0
YYD3_k127_5178732_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007694 488.0
YYD3_k127_5178732_1 DinB superfamily - - - 0.0000000000000000000000000000000000000000002423 167.0
YYD3_k127_5178732_2 HD domain - - - 0.000000000000000000001968 102.0
YYD3_k127_5178732_3 FR47-like protein - - - 0.0006317 43.0
YYD3_k127_5193125_0 threonyl-tRNA aminoacylation K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.332e-197 634.0
YYD3_k127_5193125_1 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000002674 224.0
YYD3_k127_5193125_2 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000000000000000000001832 205.0
YYD3_k127_5193125_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000001065 93.0
YYD3_k127_5193125_4 - - - - 0.000000002859 66.0
YYD3_k127_5193125_5 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000002492 57.0
YYD3_k127_5197695_0 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 465.0
YYD3_k127_5197695_1 - - - - 0.000000000000000000000003277 108.0
YYD3_k127_519919_0 Two component regulator propeller - - - 0.0000000000000000000000003298 122.0
YYD3_k127_519919_1 Evidence 5 No homology to any previously reported sequences - - - 0.00000000003963 70.0
YYD3_k127_519919_2 Tetratricopeptide repeat - - - 0.00000005751 65.0
YYD3_k127_519919_3 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000001756 64.0
YYD3_k127_519919_4 cellulose binding - - - 0.0001563 55.0
YYD3_k127_5208451_0 Redoxin - - - 0.00000000000000000000000000000000000000000000001134 186.0
YYD3_k127_5208451_1 Disulphide bond corrector protein DsbC K04084 - 1.8.1.8 0.000000000000000000000000000000000001102 151.0
YYD3_k127_5208451_2 HI0933-like protein K07007 - - 0.0000000000000001867 83.0
YYD3_k127_5222475_0 - - - - 0.000000000000000000000000000000000005087 154.0
YYD3_k127_5222475_1 PAP2 superfamily - - - 0.000000000000000000000000000000000007764 151.0
YYD3_k127_5222475_2 - - - - 0.000000000000000000000000000001623 129.0
YYD3_k127_5222475_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000003931 74.0
YYD3_k127_5222475_4 - - - - 0.00000002762 63.0
YYD3_k127_5222475_5 Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.000001215 57.0
YYD3_k127_5222475_7 Cytochrome C' - - - 0.0005154 49.0
YYD3_k127_524272_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 9.725e-195 649.0
YYD3_k127_524272_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 445.0
YYD3_k127_524272_2 C4-type zinc ribbon domain K07164,K22391 - 3.5.4.16 0.0000000000000000000006037 106.0
YYD3_k127_524272_3 LppC putative lipoprotein - - - 0.00000000167 69.0
YYD3_k127_524272_5 PQQ-like domain K17713 - - 0.0006042 51.0
YYD3_k127_5247167_0 Aminotransferase K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 370.0
YYD3_k127_5247167_1 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001036 245.0
YYD3_k127_5247770_0 PFAM Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 383.0
YYD3_k127_5247770_1 Transcriptional regulator, LysR - - - 0.00085 45.0
YYD3_k127_5253400_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005693 560.0
YYD3_k127_5253400_1 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003743 531.0
YYD3_k127_5253400_10 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000003731 205.0
YYD3_k127_5253400_11 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000001683 174.0
YYD3_k127_5253400_12 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000004654 155.0
YYD3_k127_5253400_13 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000102 152.0
YYD3_k127_5253400_14 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000000000000000000234 156.0
YYD3_k127_5253400_15 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000008349 136.0
YYD3_k127_5253400_16 asparaginase K01424,K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.1,3.5.1.26 0.000000000000000000000000000156 115.0
YYD3_k127_5253400_17 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000005611 111.0
YYD3_k127_5253400_18 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000002187 114.0
YYD3_k127_5253400_19 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000001759 98.0
YYD3_k127_5253400_2 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 435.0
YYD3_k127_5253400_20 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000002813 89.0
YYD3_k127_5253400_21 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.00000000000006467 72.0
YYD3_k127_5253400_22 Putative zinc-finger - - - 0.000394 51.0
YYD3_k127_5253400_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008013 427.0
YYD3_k127_5253400_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008486 390.0
YYD3_k127_5253400_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 385.0
YYD3_k127_5253400_6 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 314.0
YYD3_k127_5253400_7 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003838 293.0
YYD3_k127_5253400_8 malonyl CoA-acyl carrier protein transacylase K00645,K15327,K15329,K15355,K15469 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 288.0
YYD3_k127_5253400_9 KR domain K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003734 277.0
YYD3_k127_5260639_0 Malic enzyme, NAD binding domain K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 7.181e-291 909.0
YYD3_k127_5260639_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 324.0
YYD3_k127_5260639_2 Prephenate dehydrogenase K00210 - 1.3.1.12 0.0000000000000000000000000000000000000000000000253 194.0
YYD3_k127_5261614_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002563 308.0
YYD3_k127_5261614_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000001531 229.0
YYD3_k127_5261614_2 LVIVD repeat K01179 - 3.2.1.4 0.0000000001022 76.0
YYD3_k127_5280885_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 404.0
YYD3_k127_5280885_1 serine O-acetyltransferase K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 312.0
YYD3_k127_5280885_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006671 247.0
YYD3_k127_5280885_3 amino acid - - - 0.000000000000000000000000000000000000000000000000000000000000000001078 247.0
YYD3_k127_5280885_4 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000001494 75.0
YYD3_k127_5288491_0 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000699 347.0
YYD3_k127_5288491_1 RNase_H superfamily K07502 - - 0.00000000000000000000000000000001053 140.0
YYD3_k127_5288491_2 Photosynthesis system II assembly factor YCF48 - - - 0.00000000000000000007041 103.0
YYD3_k127_5288491_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000006364 84.0
YYD3_k127_5288491_4 cellulose binding K00505 - 1.14.18.1 0.00000000002698 76.0
YYD3_k127_5288491_5 Evidence 5 No homology to any previously reported sequences K14194,K21449 - - 0.00000003735 66.0
YYD3_k127_5288491_6 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K20276 - - 0.000001011 57.0
YYD3_k127_5329788_0 FlgD Ig-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003777 602.0
YYD3_k127_5329788_1 Peptidase family M28 K19702 - 3.4.11.24 0.000000001545 72.0
YYD3_k127_5331614_0 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005278 509.0
YYD3_k127_5331614_1 PFAM Cytochrome c, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 433.0
YYD3_k127_5331614_2 oxidase subunit K08738 - - 0.000000000000000000000000000000000000000000000000000000000001491 224.0
YYD3_k127_5331614_3 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000001501 214.0
YYD3_k127_5331614_4 WD40 repeats - - - 0.000000000000000000006202 100.0
YYD3_k127_533850_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 402.0
YYD3_k127_533850_1 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000004481 74.0
YYD3_k127_533850_2 oxidoreductase activity - - - 0.000146 48.0
YYD3_k127_5338672_0 tail specific protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 345.0
YYD3_k127_536094_0 Domain of unknown function (DUF4162) K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008632 324.0
YYD3_k127_536094_1 stage 0 sporulation protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000193 205.0
YYD3_k127_536094_2 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000002136 158.0
YYD3_k127_536094_3 - - - - 0.0000000000000000000000000000000000004424 152.0
YYD3_k127_5368895_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 489.0
YYD3_k127_5368895_1 Carboxypeptidase regulatory-like domain - - - 0.0000005821 61.0
YYD3_k127_5371944_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000006317 184.0
YYD3_k127_5371944_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0008306 51.0
YYD3_k127_5379267_0 Aminotransferase class-V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 376.0
YYD3_k127_5379267_1 biosynthesis protein ThiH K03150 - 4.1.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000002909 260.0
YYD3_k127_5379267_2 Sigma-70, region 4 K03088 - - 0.0000000000000000000002919 105.0
YYD3_k127_5379267_3 AntiSigma factor - - - 0.0004594 51.0
YYD3_k127_5381793_0 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 325.0
YYD3_k127_5381793_1 Thiol disulfide interchange protein K04084 - 1.8.1.8 0.0008195 42.0
YYD3_k127_5395877_0 Serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000001632 211.0
YYD3_k127_5395877_1 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000002917 93.0
YYD3_k127_5395877_2 Sigma-70, region 4 - - - 0.00000007105 62.0
YYD3_k127_5425484_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 2.888e-195 628.0
YYD3_k127_5425484_1 YtxH-like protein - - - 0.00000004037 61.0
YYD3_k127_5427197_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000003903 182.0
YYD3_k127_5432034_0 Short chain fatty acid transporter K02106 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 445.0
YYD3_k127_5432034_1 palmitoyl-(protein) hydrolase activity K06999 - - 0.0000000000000000000000000000000000000000000032 182.0
YYD3_k127_5432034_2 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000007335 76.0
YYD3_k127_544533_0 PLD-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 385.0
YYD3_k127_544533_1 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 361.0
YYD3_k127_544533_2 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 326.0
YYD3_k127_544533_3 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004621 272.0
YYD3_k127_5465302_0 D,D-heptose 1,7-bisphosphate phosphatase K03273,K15669 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 2.7.7.71,3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000002077 178.0
YYD3_k127_5465302_1 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000002245 126.0
YYD3_k127_5465302_2 Galactose oxidase, central domain - - - 0.00000005766 67.0
YYD3_k127_5465302_3 Parallel beta-helix repeats - - - 0.000002241 61.0
YYD3_k127_5472324_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1225.0
YYD3_k127_5472324_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 396.0
YYD3_k127_5481658_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002765 246.0
YYD3_k127_5481658_1 membrane - - - 0.0000000000000000000000000000001014 139.0
YYD3_k127_5481658_2 LytTr DNA-binding domain - - - 0.000000000000000000000001203 118.0
YYD3_k127_5481658_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000004154 61.0
YYD3_k127_5487515_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 4.659e-289 903.0
YYD3_k127_5487515_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358,K15771 GO:0001666,GO:0001817,GO:0001819,GO:0002791,GO:0002793,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0006950,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009274,GO:0009275,GO:0009628,GO:0009986,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0010339,GO:0010467,GO:0016020,GO:0019538,GO:0019899,GO:0022610,GO:0030312,GO:0032677,GO:0032757,GO:0032879,GO:0032880,GO:0034641,GO:0034645,GO:0035375,GO:0035821,GO:0036293,GO:0040007,GO:0042221,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044003,GO:0044068,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044426,GO:0044444,GO:0044462,GO:0044464,GO:0044650,GO:0044651,GO:0048518,GO:0048522,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051701,GO:0051704,GO:0051817,GO:0065007,GO:0070201,GO:0070482,GO:0071704,GO:0071944,GO:0090087,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:2000482,GO:2000484 - 3.518e-204 640.0
YYD3_k127_5487515_10 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000005013 83.0
YYD3_k127_5487515_11 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000001187 66.0
YYD3_k127_5487515_12 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00001125 51.0
YYD3_k127_5487515_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 397.0
YYD3_k127_5487515_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 295.0
YYD3_k127_5487515_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000007915 220.0
YYD3_k127_5487515_5 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000004062 213.0
YYD3_k127_5487515_6 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000001402 209.0
YYD3_k127_5487515_7 Participates in transcription elongation, termination and antitermination K02601 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030312,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000001374 191.0
YYD3_k127_5487515_8 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000001099 148.0
YYD3_k127_5487515_9 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000000000009421 141.0
YYD3_k127_5509135_0 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0 1169.0
YYD3_k127_5509135_1 Metal-dependent phosphoesterase K07053 - 3.1.3.97 0.00000000000000000000000000000001041 130.0
YYD3_k127_5509569_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 8.432e-245 783.0
YYD3_k127_5509569_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 9.049e-210 674.0
YYD3_k127_5509569_10 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000004115 152.0
YYD3_k127_5509569_11 peptidase activity, acting on L-amino acid peptides K01179 - 3.2.1.4 0.000000000000000000000000000000000001458 160.0
YYD3_k127_5509569_12 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000005214 126.0
YYD3_k127_5509569_13 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.000000000000000000000000000807 130.0
YYD3_k127_5509569_14 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000157 117.0
YYD3_k127_5509569_15 PFAM Phosphoribosyl transferase domain - - - 0.00000000000000000000000009667 115.0
YYD3_k127_5509569_2 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008557 497.0
YYD3_k127_5509569_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.27,1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 376.0
YYD3_k127_5509569_4 'Xanthine and CO dehydrogenases maturation factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 308.0
YYD3_k127_5509569_5 Immune inhibitor A peptidase M6 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003882 323.0
YYD3_k127_5509569_6 DAHP synthetase I family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000002306 273.0
YYD3_k127_5509569_7 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000002719 246.0
YYD3_k127_5509569_8 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000002398 259.0
YYD3_k127_5509569_9 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000174 207.0
YYD3_k127_5509660_0 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 487.0
YYD3_k127_5509660_1 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 377.0
YYD3_k127_5509660_2 glycogen (starch) synthase activity K00703,K00754 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002957 333.0
YYD3_k127_5509660_3 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000001222 224.0
YYD3_k127_5509660_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000221 212.0
YYD3_k127_5509660_5 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000001462 207.0
YYD3_k127_5509660_6 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000004594 184.0
YYD3_k127_5509660_7 Glyoxalase-like domain K06996 - - 0.000000000000000000000000000000000000000001838 160.0
YYD3_k127_5544969_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1369.0
YYD3_k127_5544969_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 334.0
YYD3_k127_5544969_2 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000001853 158.0
YYD3_k127_5544969_3 AcrB/AcrD/AcrF family K03296 - - 0.000000000000000000000000000000002398 148.0
YYD3_k127_5570784_0 PFAM Major Facilitator Superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 375.0
YYD3_k127_5570784_1 PFAM RNA binding S1 domain protein K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005624 280.0
YYD3_k127_5570784_2 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005621 255.0
YYD3_k127_5570784_3 RNA recognition motif - - - 0.00000000000000000000000000009128 119.0
YYD3_k127_5570784_4 peroxiredoxin activity K01607 - 4.1.1.44 0.0000000000000000000000000007773 121.0
YYD3_k127_5570784_5 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.000000000000000000000000004814 114.0
YYD3_k127_5570784_6 Carboxypeptidase regulatory-like domain - - - 0.00001161 55.0
YYD3_k127_5575125_0 adenosine deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 386.0
YYD3_k127_5575125_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003475 325.0
YYD3_k127_5575125_2 ABC transporter C-terminal domain K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007666 278.0
YYD3_k127_5575125_3 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000001164 156.0
YYD3_k127_5575125_4 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000001177 92.0
YYD3_k127_5576671_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002308 267.0
YYD3_k127_5576671_1 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000000000000104 170.0
YYD3_k127_5576671_2 Major facilitator Superfamily - - - 0.000008375 58.0
YYD3_k127_5606442_0 PFAM regulatory protein LuxR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004387 268.0
YYD3_k127_5606442_1 - - - - 0.000000000000000000000000000000000000000000000000000005859 200.0
YYD3_k127_5606442_2 protein involved in exopolysaccharide biosynthesis - - - 0.00000000000000001251 97.0
YYD3_k127_5606442_3 - - - - 0.0000000000001383 83.0
YYD3_k127_5612801_0 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 366.0
YYD3_k127_5612801_1 Nucleotidyl transferase - - - 0.00000000000000000000000000007143 130.0
YYD3_k127_5613449_0 Subtilase family - - - 0.00000000000000000000000000003158 126.0
YYD3_k127_5613449_1 - - - - 0.000009694 57.0
YYD3_k127_5618837_0 Pfam:UPF0118 - - - 0.00000000000000000000000000000000000223 153.0
YYD3_k127_5618837_1 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000006439 76.0
YYD3_k127_5618837_2 C-terminal domain of histone - - - 0.0000000000002632 78.0
YYD3_k127_5618837_3 membrane protein, required for colicin V production K03558 - - 0.0000000001926 69.0
YYD3_k127_5618837_4 Yip1 domain - - - 0.0000003143 61.0
YYD3_k127_5628349_0 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000002088 214.0
YYD3_k127_5628349_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000009366 203.0
YYD3_k127_5628349_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000009918 146.0
YYD3_k127_563922_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 387.0
YYD3_k127_563922_1 TIGRFAM MazG family protein K02428,K02499 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000001795 256.0
YYD3_k127_563922_2 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000004857 128.0
YYD3_k127_563922_3 peptidyl-tyrosine sulfation - - - 0.000000000001053 81.0
YYD3_k127_563922_4 Domain of unknown function (DUF1844) - - - 0.000000000003044 74.0
YYD3_k127_5656912_0 imidazolonepropionase activity K01443 - 3.5.1.25 2.413e-211 689.0
YYD3_k127_5665969_0 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K06282,K18008 - 1.12.2.1,1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 495.0
YYD3_k127_5665969_1 PFAM Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009755 377.0
YYD3_k127_5665969_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003422 308.0
YYD3_k127_5665969_3 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.00000000000000000001535 91.0
YYD3_k127_5674318_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005444 460.0
YYD3_k127_5674318_1 Rhomboid family - - - 0.000000000000000000000000000000000000000000000005278 186.0
YYD3_k127_5674318_2 - - - - 0.000000000000000002 98.0
YYD3_k127_5674318_3 - - - - 0.000000000000000006676 98.0
YYD3_k127_5674318_4 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000005852 81.0
YYD3_k127_5674318_5 LVIVD repeat K01179 - 3.2.1.4 0.000000000003165 80.0
YYD3_k127_5674318_6 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.000843 52.0
YYD3_k127_5675887_0 COG1125 ABC-type proline glycine betaine transport systems ATPase components K05847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 303.0
YYD3_k127_5675887_1 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.000000000000000000000000000000000000000000000000002245 201.0
YYD3_k127_5675887_2 Evidence 5 No homology to any previously reported sequences K07752 - 3.4.17.22 0.0001496 44.0
YYD3_k127_569408_0 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 302.0
YYD3_k127_569408_1 type II and III secretion system protein K02507,K02666 - - 0.000000000000000000000000000000000000000000000000003926 198.0
YYD3_k127_5699875_0 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000006232 179.0
YYD3_k127_5699875_1 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000009402 128.0
YYD3_k127_5699875_2 amino acid activation for nonribosomal peptide biosynthetic process K17713 - - 0.00000000001373 77.0
YYD3_k127_5714182_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007542 285.0
YYD3_k127_5714182_1 FIST C domain - GO:0008150,GO:0040007 - 0.0000000000000000000000000000000000000002654 154.0
YYD3_k127_5714182_2 Parallel beta-helix repeats - - - 0.000000000000000000000000000000005818 142.0
YYD3_k127_5714182_3 Methyltransferase domain - - - 0.000000000000000000000169 110.0
YYD3_k127_5714182_4 Psort location CytoplasmicMembrane, score - - - 0.0000621 48.0
YYD3_k127_5717872_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000006498 213.0
YYD3_k127_5717872_1 cellulase activity - - - 0.000000000119 75.0
YYD3_k127_5722399_0 ABC transporter - - - 3.716e-258 808.0
YYD3_k127_5722399_1 High confidence in function and specificity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005802 380.0
YYD3_k127_5722399_2 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 343.0
YYD3_k127_5722399_3 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 288.0
YYD3_k127_5722399_4 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000008205 228.0
YYD3_k127_5722399_5 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000001278 226.0
YYD3_k127_5722399_6 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000002545 176.0
YYD3_k127_5722399_7 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0000000000000000000006728 107.0
YYD3_k127_5726550_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 374.0
YYD3_k127_5726550_1 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000001447 132.0
YYD3_k127_5726550_2 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000007454 87.0
YYD3_k127_574532_0 Protein tyrosine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002446 267.0
YYD3_k127_574532_1 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000001096 223.0
YYD3_k127_574532_2 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000001131 123.0
YYD3_k127_574532_3 3-alpha domain - - - 0.00000000000000000000000000201 125.0
YYD3_k127_5765465_0 Predicted permease K07089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 597.0
YYD3_k127_5765465_1 arsenical-resistance protein K03325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 490.0
YYD3_k127_5765465_10 Belongs to the peptidase S8 family K01337,K01387,K05994,K08604,K14645,K20276 - 3.4.11.10,3.4.21.50,3.4.24.25,3.4.24.3 0.0001577 53.0
YYD3_k127_5765465_2 Thrombospondin type 3 repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003899 274.0
YYD3_k127_5765465_3 Cytochrome C biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000000000002383 218.0
YYD3_k127_5765465_4 NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000003616 216.0
YYD3_k127_5765465_5 COG0526, thiol-disulfide isomerase and thioredoxins K02199 - - 0.00000000000000000000000000002973 129.0
YYD3_k127_5765465_6 SMART regulatory protein ArsR - - - 0.0000000000000000000002352 102.0
YYD3_k127_5765465_7 TIGRFAM redox-active disulfide protein 2 - - - 0.00000000000000001196 94.0
YYD3_k127_5765465_8 Multicopper oxidase that may play a role in the maintenance of inorganic phosphate homeostasis - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0016722,GO:0055114 - 0.000000000000000154 89.0
YYD3_k127_5765465_9 FlgD Ig-like domain - - - 0.000007506 59.0
YYD3_k127_5776899_0 Tricorn protease homolog K08676 - - 1.785e-208 689.0
YYD3_k127_5776899_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001263 289.0
YYD3_k127_5776899_2 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.000000000000000000000000003467 121.0
YYD3_k127_5776899_3 - - - - 0.0000000001036 71.0
YYD3_k127_5782904_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 414.0
YYD3_k127_5782904_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000002533 222.0
YYD3_k127_5782904_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000001031 223.0
YYD3_k127_5782904_3 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000002345 214.0
YYD3_k127_5782904_4 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000001427 86.0
YYD3_k127_5786779_0 PrkA AAA domain K07180 - - 0.0 1021.0
YYD3_k127_5786779_1 SpoVR like protein K06415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 540.0
YYD3_k127_5786779_10 Preprotein translocase, YajC subunit K03210 - - 0.0000000000000000009718 91.0
YYD3_k127_5786779_11 Protein of unknown function (DUF2905) - - - 0.0000000000000001681 83.0
YYD3_k127_5786779_12 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000002838 78.0
YYD3_k127_5786779_2 Belongs to the UPF0229 family K09786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 492.0
YYD3_k127_5786779_3 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 427.0
YYD3_k127_5786779_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007294 388.0
YYD3_k127_5786779_5 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 322.0
YYD3_k127_5786779_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000006375 267.0
YYD3_k127_5786779_7 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000001262 195.0
YYD3_k127_5786779_8 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000005507 181.0
YYD3_k127_5786779_9 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000001768 104.0
YYD3_k127_5791059_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 469.0
YYD3_k127_5791059_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000588 154.0
YYD3_k127_5797094_0 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006679 310.0
YYD3_k127_5797094_1 Inner membrane component of T3SS, cytoplasmic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008665 273.0
YYD3_k127_5797094_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000705 222.0
YYD3_k127_5797094_3 - - - - 0.0000000000000000000000000000000000000000000000000122 188.0
YYD3_k127_5797094_4 PFAM HNH endonuclease - - - 0.0000000000000000000000000000000000000000000001356 192.0
YYD3_k127_5797094_5 - - - - 0.000000000000000000000000000000000000000000007231 171.0
YYD3_k127_5800864_0 ABC transporter K06147,K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 413.0
YYD3_k127_5800864_1 (ABC) transporter K06147,K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005848 344.0
YYD3_k127_5819478_0 Peptidase S9, prolyl oligopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009789 432.0
YYD3_k127_5819478_1 Acetyltransferase (GNAT) family - - - 0.000000001394 62.0
YYD3_k127_5827185_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006037 447.0
YYD3_k127_5827185_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883,K15526 GO:0000166,GO:0001871,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030246,GO:0030247,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065 6.1.1.16,6.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000001177 265.0
YYD3_k127_5827185_2 phosphoserine phosphatase activity K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000002786 213.0
YYD3_k127_5827185_3 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000002261 170.0
YYD3_k127_5827185_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.000000000000000000000000000000000000003918 168.0
YYD3_k127_5827185_5 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000512 79.0
YYD3_k127_5827185_6 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000003085 69.0
YYD3_k127_5830671_0 PFAM ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003165 422.0
YYD3_k127_5830671_1 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 395.0
YYD3_k127_5830671_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 341.0
YYD3_k127_5832825_0 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 413.0
YYD3_k127_5832825_1 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 357.0
YYD3_k127_5832825_2 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 339.0
YYD3_k127_5832825_3 methyltransferase - - - 0.0000000000000000000000000000000000000001826 165.0
YYD3_k127_5832825_4 ABC transporter K02003 - - 0.0000000000000000000003005 109.0
YYD3_k127_5832825_5 Glycoside hydrolase - - - 0.000000002116 69.0
YYD3_k127_5839253_0 Subtilase family K13276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 329.0
YYD3_k127_5839253_1 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0000726,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008833,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004699 294.0
YYD3_k127_5839253_2 Exonuclease - - - 0.000000000000000000000000000000000171 139.0
YYD3_k127_5839253_3 subunit of a heme lyase K02200 - - 0.000000002961 66.0
YYD3_k127_5848009_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175,K00177,K00187 - 1.2.7.11,1.2.7.3,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006804 588.0
YYD3_k127_5848009_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008672 477.0
YYD3_k127_5848009_10 protein phosphatase 2C domain protein - - - 0.0004318 53.0
YYD3_k127_5848009_2 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009303 410.0
YYD3_k127_5848009_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 358.0
YYD3_k127_5848009_4 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008914 342.0
YYD3_k127_5848009_5 Belongs to the HypD family K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 292.0
YYD3_k127_5848009_6 Hydrogenase accessory protein HypB K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000002899 227.0
YYD3_k127_5848009_7 His Kinase A (phosphoacceptor) domain K00694,K03406,K07315,K14986 - 2.4.1.12,2.7.13.3,3.1.3.3 0.000000000000000000000000000004459 136.0
YYD3_k127_5848009_8 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.00000000000000000000001429 107.0
YYD3_k127_5848009_9 Hydrogenase/urease nickel incorporation, metallochaperone, hypA K04651 - - 0.00000000000008009 76.0
YYD3_k127_5850403_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 511.0
YYD3_k127_5850403_1 PFAM aminotransferase, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 395.0
YYD3_k127_5854030_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000312 170.0
YYD3_k127_5854030_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000004949 60.0
YYD3_k127_5898699_0 Peptidase family C25 - - - 0.0000000000000000000000000000000004641 153.0
YYD3_k127_5898699_1 protein secretion - - - 0.00000000000004783 87.0
YYD3_k127_5944536_0 DNA polymerase type-B family K02336 - 2.7.7.7 4.616e-215 694.0
YYD3_k127_5944536_1 DinB family - - - 0.0000000000000000000000000000000000000000001808 168.0
YYD3_k127_5944536_2 PFAM response regulator receiver K02483,K07658,K07668 - - 0.000000000000000000000000000000000002137 144.0
YYD3_k127_5944536_3 PFAM GGDEF domain containing protein - - - 0.0002845 44.0
YYD3_k127_5978306_0 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003581 609.0
YYD3_k127_5978306_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 497.0
YYD3_k127_5978306_2 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 290.0
YYD3_k127_5978306_3 Carboxypeptidase regulatory-like domain - - - 0.000302 48.0
YYD3_k127_5991000_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 533.0
YYD3_k127_5991000_1 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 377.0
YYD3_k127_5991000_2 polyketide synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 312.0
YYD3_k127_5991000_3 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.0000000000000000000000000000000000000000000000000000000000000000003826 245.0
YYD3_k127_5991000_4 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.00000000000000000000000000000000000006997 145.0
YYD3_k127_5993189_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000006201 181.0
YYD3_k127_6006365_0 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004449 271.0
YYD3_k127_6006365_1 cytochrome c K02305 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000003843 132.0
YYD3_k127_6006365_2 Two component regulator propeller - - - 0.00000000000004859 83.0
YYD3_k127_6019457_0 amine dehydrogenase activity - - - 0.0000000000000000000000000000002432 143.0
YYD3_k127_6019457_1 Protein conserved in bacteria - - - 0.0000000928 65.0
YYD3_k127_6056632_0 PFAM Pyridoxal-dependent decarboxylase K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 329.0
YYD3_k127_6056632_1 copper resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000214 294.0
YYD3_k127_6056632_2 copper-translocating P-type ATPase K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000002327 178.0
YYD3_k127_6061608_0 NapC/NirT cytochrome c family, N-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 447.0
YYD3_k127_6061608_1 denitrification pathway - GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0019645,GO:0022900,GO:0022904,GO:0044237,GO:0045333,GO:0055114 - 0.000000000000000000000000000000000000000000000000002951 194.0
YYD3_k127_6061608_2 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000005152 178.0
YYD3_k127_6066207_0 Serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000001038 224.0
YYD3_k127_6066207_1 Hep Hag repeat protein - - - 0.0000005619 53.0
YYD3_k127_6066207_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000003205 56.0
YYD3_k127_6072377_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.714e-236 741.0
YYD3_k127_6072377_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 591.0
YYD3_k127_6072377_2 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 479.0
YYD3_k127_6072377_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000004274 267.0
YYD3_k127_6072377_4 Biotin carboxylase C-terminal domain K11263 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 6.3.4.14,6.4.1.2,6.4.1.3 0.000000002784 68.0
YYD3_k127_6074669_0 Staphylococcal nuclease homologues - - - 0.00002409 54.0
YYD3_k127_6074669_1 Right handed beta helix region - - - 0.0002143 55.0
YYD3_k127_6089850_0 PFAM Glycosyl transferase, group 1 K13057 - 2.4.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 444.0
YYD3_k127_6089850_1 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000007223 204.0
YYD3_k127_6089850_2 LVIVD repeat - - - 0.0000003229 61.0
YYD3_k127_6096596_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.299e-205 647.0
YYD3_k127_6096596_1 TilS substrate binding domain K04075 - 6.3.4.19 0.000000000000000000000000000000000000652 157.0
YYD3_k127_6104183_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 575.0
YYD3_k127_6104183_1 beta-1,4-mannooligosaccharide phosphorylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 491.0
YYD3_k127_6104183_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 389.0
YYD3_k127_6104183_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000001496 225.0
YYD3_k127_6104183_4 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.00000000000000000000000000005597 117.0
YYD3_k127_6104183_5 response regulator - - - 0.000000000000000000000001594 108.0
YYD3_k127_6133326_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005402 552.0
YYD3_k127_6133326_1 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009914 304.0
YYD3_k127_6133326_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000006817 240.0
YYD3_k127_6133326_3 rRNA binding K02988 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000616 210.0
YYD3_k127_6133326_4 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000006179 180.0
YYD3_k127_6133326_5 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000003805 164.0
YYD3_k127_6133326_6 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000006836 74.0
YYD3_k127_6133326_7 Ribosomal protein L36 K02919 - - 0.00000000001838 64.0
YYD3_k127_613666_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000094 617.0
YYD3_k127_613666_1 Isocitrate/isopropylmalate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 569.0
YYD3_k127_613666_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008486 479.0
YYD3_k127_613666_3 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 450.0
YYD3_k127_613666_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 426.0
YYD3_k127_613666_5 domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000001967 194.0
YYD3_k127_613666_6 Belongs to the peptidase S8 family K01361 - 3.4.21.96 0.000000000000000000000000000000000000000000000000108 194.0
YYD3_k127_613666_7 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01450,K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.31,3.5.1.88 0.000000000000000000000000000000000000000000000004964 177.0
YYD3_k127_613666_8 COG1956 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000000000000000000000000000000002122 171.0
YYD3_k127_613666_9 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000008029 79.0
YYD3_k127_6152698_0 PFAM Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008263 274.0
YYD3_k127_6152698_2 peptidase S9 - - - 0.00000000000000007564 86.0
YYD3_k127_6152698_3 domain, Protein - - - 0.000000006946 63.0
YYD3_k127_6160338_0 Subtilase family K13276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004397 321.0
YYD3_k127_6160338_1 ABC transporter C-terminal domain K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001773 263.0
YYD3_k127_6164080_0 3-isopropylmalate dehydratase activity K01681,K01703,K01704,K17749 - 4.2.1.3,4.2.1.33,4.2.1.35 7.866e-236 750.0
YYD3_k127_6164080_1 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 537.0
YYD3_k127_6164080_2 Acetyltransferase (GNAT) family - - - 0.0000000000001814 76.0
YYD3_k127_6164080_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000008747 78.0
YYD3_k127_6164080_4 chloroplast lumen common family protein - - - 0.0005381 53.0
YYD3_k127_6171856_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 4.543e-318 995.0
YYD3_k127_6171856_1 Surface antigen K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 464.0
YYD3_k127_6171856_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02372,K02535,K13599,K16363 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 3.5.1.108,4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 397.0
YYD3_k127_6171856_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005792 340.0
YYD3_k127_6171856_4 ABC-type transport system involved in lipoprotein release permease component K02004,K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0089705,GO:0098796,GO:0098797,GO:1990778 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008903 335.0
YYD3_k127_6171856_5 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 312.0
YYD3_k127_6171856_6 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000002427 243.0
YYD3_k127_6171856_7 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.0000000000000000000000000000004215 129.0
YYD3_k127_6171856_8 Outer membrane protein (OmpH-like) K06142 - - 0.00000000000000000000001092 115.0
YYD3_k127_6194636_0 peptidase activity, acting on L-amino acid peptides K07752 - 3.4.17.22 0.000000000000000000000000000000000000000000000000009914 201.0
YYD3_k127_6194636_1 - - - - 0.000000000000000000000001077 114.0
YYD3_k127_6194636_2 Major facilitator Superfamily - - - 0.0003266 51.0
YYD3_k127_6202850_0 Cytochrome c3 - - - 0.0000000000000000000000000000000000000000000000000000000001024 216.0
YYD3_k127_6202850_1 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03769 - 5.2.1.8 0.0000000000000001389 94.0
YYD3_k127_6228121_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005609 539.0
YYD3_k127_6228121_1 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 290.0
YYD3_k127_6228121_2 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001826 257.0
YYD3_k127_6228121_3 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000003501 209.0
YYD3_k127_6228121_4 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000003818 138.0
YYD3_k127_6230296_0 Photosynthesis system II assembly factor YCF48 - - - 0.000000000000000000000000002624 126.0
YYD3_k127_6230296_1 - - - - 0.0000000000001145 81.0
YYD3_k127_6269283_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000001016 195.0
YYD3_k127_6269283_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000006669 91.0
YYD3_k127_6269283_2 Parallel beta-helix repeats - - - 0.00000005192 65.0
YYD3_k127_6269283_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K00457 - 1.13.11.27 0.000001182 55.0
YYD3_k127_6272736_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 330.0
YYD3_k127_6272736_1 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008264 301.0
YYD3_k127_6272736_2 - K01992 - - 0.0000000000000000000000000000000000000000000000000000000003247 222.0
YYD3_k127_6272736_3 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000004074 192.0
YYD3_k127_6272736_4 Domain of unknown function (DUF4340) - - - 0.0000000002721 72.0
YYD3_k127_6272736_5 TRAP transporter T-component - - - 0.000000001387 65.0
YYD3_k127_627364_0 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 366.0
YYD3_k127_627364_1 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007184 335.0
YYD3_k127_627364_10 - - - - 0.000000000000000054 95.0
YYD3_k127_627364_2 pfkB family carbohydrate kinase K00852,K00856 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004001,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005975,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019200,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032559,GO:0032560,GO:0032561,GO:0032567,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046390,GO:0046483,GO:0046835,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 312.0
YYD3_k127_627364_3 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005035 284.0
YYD3_k127_627364_4 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000003035 233.0
YYD3_k127_627364_5 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000009217 166.0
YYD3_k127_627364_6 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.00000000000000000000000000000000000001749 156.0
YYD3_k127_627364_7 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000003788 150.0
YYD3_k127_627364_8 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000001262 123.0
YYD3_k127_627364_9 Glycosyl transferase 4-like K00754 - - 0.000000000000000000000000002473 114.0
YYD3_k127_6304294_0 Domain of unknown function (DUF4386) - - - 0.00000000000000000000000000000000000000000000000000000000000658 219.0
YYD3_k127_6304294_1 Belongs to the peptidase S26 family - - - 0.000000000000000000000000000000000005672 142.0
YYD3_k127_6304294_2 Adenylate K01768 - 4.6.1.1 0.0000000000000000000000000000005419 143.0
YYD3_k127_6304294_3 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000009293 86.0
YYD3_k127_6306541_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 403.0
YYD3_k127_6306541_1 domain, Protein - - - 0.0000000000000000007796 101.0
YYD3_k127_6306541_2 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.00000000000001093 87.0
YYD3_k127_6314093_0 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000000000000000000000000000001367 136.0
YYD3_k127_6314093_1 sigma-70 region 2 domain protein K03088 - - 0.0000000000000000000002934 107.0
YYD3_k127_6314093_2 glycosyl transferase group 1 - - - 0.000000000000000000001276 97.0
YYD3_k127_6333591_0 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000001745 230.0
YYD3_k127_6333591_1 FemAB family - - - 0.000000000000000000000000000000000000000004925 169.0
YYD3_k127_6333591_2 Helix-turn-helix XRE-family like proteins K21498 - - 0.00000000000000000000000000000000000000004313 153.0
YYD3_k127_6333591_3 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.0000000000000000000000000000000229 127.0
YYD3_k127_6333591_4 Glycosyl transferases group 1 - - - 0.000000000000000000000000001736 127.0
YYD3_k127_6333591_5 amine dehydrogenase activity K12287 - - 0.000000001543 62.0
YYD3_k127_6338744_0 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 472.0
YYD3_k127_6338744_1 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 450.0
YYD3_k127_6338744_2 Outer membrane lipoprotein - - - 0.000000000000000000000009013 108.0
YYD3_k127_6338744_3 Major facilitator superfamily - - - 0.00001188 57.0
YYD3_k127_6343507_0 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 561.0
YYD3_k127_6343507_1 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 552.0
YYD3_k127_6343507_10 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.0000000000000000000000007745 111.0
YYD3_k127_6343507_11 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000992 105.0
YYD3_k127_6343507_12 ompA family - - - 0.000004551 58.0
YYD3_k127_6343507_13 TIGRFAM TonB family protein - - - 0.00005631 55.0
YYD3_k127_6343507_14 Biopolymer transport protein K03559 - - 0.000132 48.0
YYD3_k127_6343507_15 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0005751 51.0
YYD3_k127_6343507_2 1-Cys peroxiredoxin K11188 - 1.11.1.15,1.11.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 321.0
YYD3_k127_6343507_3 Pyridoxal-phosphate dependent enzyme K12339,K21148 - 2.5.1.113,2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007593 322.0
YYD3_k127_6343507_4 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000007306 280.0
YYD3_k127_6343507_5 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001446 249.0
YYD3_k127_6343507_6 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000000003758 155.0
YYD3_k127_6343507_7 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000001716 138.0
YYD3_k127_6343507_8 Belongs to the enoyl-CoA hydratase isomerase family K05607 GO:0003674,GO:0003824,GO:0004300,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 4.2.1.18 0.0000000000000000000000000000004042 138.0
YYD3_k127_6343507_9 Protein of unknown function, DUF393 - - - 0.0000000000000000000000002989 109.0
YYD3_k127_6348019_0 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 295.0
YYD3_k127_6348019_1 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000000000000000000000004861 227.0
YYD3_k127_636592_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 530.0
YYD3_k127_636592_1 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 413.0
YYD3_k127_636592_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000001388 64.0
YYD3_k127_636592_3 LytR cell envelope-related transcriptional attenuator - - - 0.00000001777 62.0
YYD3_k127_638065_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008199 290.0
YYD3_k127_638065_1 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000703 124.0
YYD3_k127_6397373_0 Aminotransferase K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 516.0
YYD3_k127_6397373_1 Arginine K01478 - 3.5.3.6 0.0000000000000000002776 91.0
YYD3_k127_640238_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 441.0
YYD3_k127_640238_1 PFAM outer membrane efflux protein - - - 0.000000000004726 79.0
YYD3_k127_640238_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.0000002017 64.0
YYD3_k127_6402381_0 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001295 250.0
YYD3_k127_6402381_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000001478 197.0
YYD3_k127_640315_0 The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation K16899 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000002656 256.0
YYD3_k127_640315_1 ATP-dependent helicase nuclease subunit A K16898 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 3.6.4.12 0.00000000000000000000000000000000000000001206 170.0
YYD3_k127_640408_0 Belongs to the peptidase M16 family K07263 - - 1.927e-206 661.0
YYD3_k127_6406663_0 Mismatch repair ATPase (MutS family) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 549.0
YYD3_k127_6406663_1 PFAM Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005237 266.0
YYD3_k127_6406663_2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.8.1.4 0.0000000000000000000000000000000000000000001033 164.0
YYD3_k127_641575_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 550.0
YYD3_k127_6418558_0 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 441.0
YYD3_k127_6418558_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007312 329.0
YYD3_k127_6418558_2 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 302.0
YYD3_k127_6426233_0 polysaccharide export K01991 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003728 266.0
YYD3_k127_6426233_1 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000002513 178.0
YYD3_k127_6426233_2 lactoylglutathione lyase activity - - - 0.000000000000000000000000000000000000001315 150.0
YYD3_k127_6426233_3 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000000000000000000000000000001706 143.0
YYD3_k127_6426233_4 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.0000000000000000000000000000000000002817 159.0
YYD3_k127_6426233_5 TIGRFAM export-related chaperone CsaA K06878 - - 0.000000000000000000000000000000007636 130.0
YYD3_k127_6445261_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 465.0
YYD3_k127_6445261_1 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 404.0
YYD3_k127_6445261_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000002837 57.0
YYD3_k127_6488870_0 type II secretion system protein E K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 489.0
YYD3_k127_6488870_1 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004589 303.0
YYD3_k127_6488870_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000003569 153.0
YYD3_k127_6488870_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000006648 127.0
YYD3_k127_6488870_4 - - - - 0.000000001332 65.0
YYD3_k127_6488870_5 Pfam:N_methyl_2 K02650 - - 0.000001263 58.0
YYD3_k127_6488870_6 Prokaryotic N-terminal methylation motif - - - 0.000001603 59.0
YYD3_k127_6491814_0 Spermine spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 355.0
YYD3_k127_6491814_1 repeat-containing protein - - - 0.0000000009493 70.0
YYD3_k127_6491814_2 cellulose binding K00505 - 1.14.18.1 0.00001507 49.0
YYD3_k127_6492967_0 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 419.0
YYD3_k127_6492967_1 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002776 263.0
YYD3_k127_6492967_2 Phosphotransferase enzyme family - - - 0.000001529 61.0
YYD3_k127_6510082_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008079 289.0
YYD3_k127_6510082_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000004706 226.0
YYD3_k127_6510082_2 protein kinase activity - - - 0.000000000000000003292 100.0
YYD3_k127_6527106_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0 1357.0
YYD3_k127_6527106_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 314.0
YYD3_k127_6616256_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002846 288.0
YYD3_k127_6616256_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001862 273.0
YYD3_k127_6616256_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000007355 245.0
YYD3_k127_6616256_3 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000005263 196.0
YYD3_k127_6616256_4 Methyltransferase - - - 0.000000000000006183 83.0
YYD3_k127_6616256_5 palmitoyl-(protein) hydrolase activity K01091 - 3.1.3.18 0.0000000000001228 83.0
YYD3_k127_6621966_0 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 383.0
YYD3_k127_6621966_1 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 367.0
YYD3_k127_6621966_2 cellulose binding - - - 0.000000003342 69.0
YYD3_k127_6635995_0 PFAM DinB family - - - 0.00000000000000000000000000000000000000000000000002488 191.0
YYD3_k127_6635995_1 chlorophyll binding - - - 0.00000000000000000000000000000000001434 139.0
YYD3_k127_6635995_2 Belongs to the peptidase S41A family K04771,K11749 - 3.4.21.107 0.0000000000007807 83.0
YYD3_k127_6646364_0 oligosaccharyl transferase activity - - - 0.0000000000000000000000000006366 131.0
YYD3_k127_6646364_1 Glycosyl transferase K00728 - 2.4.1.109 0.0000000000000000000000584 111.0
YYD3_k127_6646364_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000001183 111.0
YYD3_k127_6674815_0 Membrane protein, TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 292.0
YYD3_k127_6674815_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000001913 103.0
YYD3_k127_6674815_2 Methylamine utilisation protein MauE - - - 0.0000006336 61.0
YYD3_k127_6713919_0 Alcohol dehydrogenase GroES-like domain K13979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008491 515.0
YYD3_k127_6713919_1 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 413.0
YYD3_k127_6713919_2 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 377.0
YYD3_k127_67237_0 Protein of unknown function (DUF3798) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008218 364.0
YYD3_k127_67237_1 PFAM ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000004198 229.0
YYD3_k127_6725970_0 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 474.0
YYD3_k127_6725970_1 Protein of unknown function (DUF2723) K16928 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 435.0
YYD3_k127_6725970_2 NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 348.0
YYD3_k127_6725970_3 Glycosyltransferase like family 2 K03606,K07011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 343.0
YYD3_k127_6725970_4 transferase activity, transferring glycosyl groups K00721,K03820 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 308.0
YYD3_k127_6725970_5 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007164 301.0
YYD3_k127_6725970_6 Glycosyl transferases group 1 - - - 0.00000000000000000000000007695 109.0
YYD3_k127_6725970_7 PFAM Two component regulator propeller - - - 0.000000001499 72.0
YYD3_k127_6726129_0 PFAM Type II secretion system protein E K02454,K02504,K02652 - - 1.623e-245 768.0
YYD3_k127_6726129_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000345 542.0
YYD3_k127_6726129_2 PFAM Type II secretion system F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 464.0
YYD3_k127_6726129_3 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 459.0
YYD3_k127_6726129_4 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000224 289.0
YYD3_k127_6751468_0 Immune inhibitor A peptidase M6 - - - 0.0000000000000000000000000008627 130.0
YYD3_k127_6751468_1 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000001494 77.0
YYD3_k127_6832663_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 394.0
YYD3_k127_6832663_1 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001703 265.0
YYD3_k127_6832663_2 PTS fructose transporter subunit IIA K02768 - 2.7.1.202 0.0000000000000000000000000614 112.0
YYD3_k127_6832663_3 VanZ like family - - - 0.000000000198 71.0
YYD3_k127_6838743_0 Fibronectin type III domain protein - - - 0.000000003451 70.0
YYD3_k127_6838743_1 PFAM PKD domain containing protein - - - 0.00003127 57.0
YYD3_k127_6838743_2 Tfp pilus assembly protein FimT K08084,K08085 - - 0.0001873 51.0
YYD3_k127_6845588_0 AcrB/AcrD/AcrF family K07787 - - 6.81e-262 824.0
YYD3_k127_6845588_1 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 451.0
YYD3_k127_6845588_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 353.0
YYD3_k127_6845588_3 Domains HisKA, HATPase_c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001074 278.0
YYD3_k127_6845588_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000001505 176.0
YYD3_k127_6851394_0 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009771 301.0
YYD3_k127_6851394_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000131 187.0
YYD3_k127_6851394_2 Protein tyrosine kinase K08884,K12132 - 2.7.11.1 0.00000000008028 75.0
YYD3_k127_6874750_0 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000987 240.0
YYD3_k127_6874750_1 Transport permease protein K01992 - - 0.000000000000000000000000000000000000005395 165.0
YYD3_k127_6874750_2 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.0000000000000004969 83.0
YYD3_k127_6882884_0 cellulose binding - - - 4.311e-197 621.0
YYD3_k127_6882884_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000008371 170.0
YYD3_k127_6882884_2 DNA-binding transcription factor activity - - - 0.00000000000000000000000000000000000009867 146.0
YYD3_k127_6882884_3 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.00000000000000002358 84.0
YYD3_k127_692371_0 Oxidoreductase molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 447.0
YYD3_k127_692371_1 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005959 264.0
YYD3_k127_692371_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000008157 237.0
YYD3_k127_692371_3 - - - - 0.0000000000000000000000000000000000000000000000000000000001349 214.0
YYD3_k127_692371_4 - - - - 0.000000000000000000000000000000000000002912 154.0
YYD3_k127_692371_5 - - - - 0.0000000000000000000000000000000004913 147.0
YYD3_k127_715813_0 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 379.0
YYD3_k127_715813_1 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 338.0
YYD3_k127_715813_2 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 313.0
YYD3_k127_715813_3 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 291.0
YYD3_k127_715813_4 Conserved protein of dim6 ntab family - - - 0.00000000000000000000000000000000000000000000003109 182.0
YYD3_k127_715813_5 photosynthesis - - - 0.00000000000000000000000000000000008577 139.0
YYD3_k127_715813_6 - - - - 0.00000000000936 73.0
YYD3_k127_715813_7 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000003706 56.0
YYD3_k127_715813_8 Peptidase family C25 - - - 0.00001235 57.0
YYD3_k127_718898_0 PFAM ABC transporter transmembrane region K06147,K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 404.0
YYD3_k127_718898_1 (ABC) transporter K06147,K06148,K11085,K16787,K18104,K18889 - 3.6.3.44 0.00000000000000000000000000000000000000000000000000000000004877 225.0
YYD3_k127_72313_0 MreB/Mbl protein K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 446.0
YYD3_k127_72313_1 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007208 361.0
YYD3_k127_72313_2 Guanosine polyphosphate pyrophosphohydrolases synthetases - - - 0.000000000000000000000000000001226 133.0
YYD3_k127_72313_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000008525 123.0
YYD3_k127_72313_4 Cell shape-determining protein MreC K03570 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007163,GO:0008150,GO:0008360,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0030428,GO:0031224,GO:0031226,GO:0042546,GO:0043621,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071554,GO:0071840,GO:0071944,GO:0071963 - 0.00000000000000000001482 102.0
YYD3_k127_72313_5 NlpC P60 family - - - 0.000000000000002252 83.0
YYD3_k127_72313_6 cellulase activity - - - 0.000000000007241 78.0
YYD3_k127_72313_7 rod shape-determining protein MreD K03571 - - 0.00004689 55.0
YYD3_k127_72313_8 - - - - 0.0001224 53.0
YYD3_k127_733738_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 433.0
YYD3_k127_733738_1 Belongs to the ATCase OTCase family K00608,K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 412.0
YYD3_k127_733738_2 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008265 309.0
YYD3_k127_733738_3 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000276 251.0
YYD3_k127_733738_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K00982,K03564 - 1.11.1.15,2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000002499 165.0
YYD3_k127_733738_5 Transporter associated domain K03699 - - 0.000000000000000000000000000000001226 148.0
YYD3_k127_733738_6 diguanylate cyclase - - - 0.000000000000000000000000000000004395 142.0
YYD3_k127_733738_7 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000001281 104.0
YYD3_k127_733738_8 Cbs domain K03699 - - 0.00000000000000001378 89.0
YYD3_k127_733738_9 Tetratricopeptide repeat - - - 0.0000000000004434 83.0
YYD3_k127_742673_0 amino acid - - - 0.000000000000000000000000000000000001004 143.0
YYD3_k127_742673_1 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 0.000000000001993 76.0
YYD3_k127_742673_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000003328 72.0
YYD3_k127_742673_3 CAAX protease self-immunity K07052 - - 0.00001031 57.0
YYD3_k127_742673_4 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.00001538 57.0
YYD3_k127_746480_0 Domain of unknown function (DUF4143) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 454.0
YYD3_k127_746480_1 Transmembrane secretion effector K08225 - - 0.00000000000000000000000000000000003071 147.0
YYD3_k127_76777_0 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000003213 233.0
YYD3_k127_76777_1 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000004771 224.0
YYD3_k127_76777_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000002177 222.0
YYD3_k127_76777_3 - - - - 0.00000000000000000000000000000000000000000000000405 183.0
YYD3_k127_76777_4 - - - - 0.0000000000000000000000000000000000000000007028 165.0
YYD3_k127_769568_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 9.33e-200 631.0
YYD3_k127_769568_1 PFAM Integrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 328.0
YYD3_k127_769568_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000008872 179.0
YYD3_k127_769568_3 deoxyhypusine monooxygenase activity - - - 0.0000004174 61.0
YYD3_k127_769568_4 long-chain fatty acid transport protein - - - 0.0001119 55.0
YYD3_k127_798682_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 441.0
YYD3_k127_798682_1 3-isopropylmalate dehydrogenase activity K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 292.0
YYD3_k127_798682_2 Belongs to the ompA family K03640 - - 0.00000000000001441 83.0
YYD3_k127_798682_3 histidine kinase HAMP region domain protein - - - 0.00009612 55.0
YYD3_k127_806654_0 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 476.0
YYD3_k127_806654_1 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000000000000000000000000000000000000000000000000000000004038 228.0
YYD3_k127_806654_2 XanTHIne and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.0000000000000000000000000000000000000000000698 177.0
YYD3_k127_806654_3 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.000000000000000006006 89.0
YYD3_k127_806654_4 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000008414 90.0
YYD3_k127_806654_5 Bacterial regulatory proteins, tetR family K09017 - - 0.00000000000005891 75.0
YYD3_k127_808875_0 acyl-coa dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 427.0
YYD3_k127_808875_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000009142 160.0
YYD3_k127_808875_2 phosphoglycolate phosphatase activity - - - 0.00000000000000000000000000000009027 134.0
YYD3_k127_808875_3 NUDIX domain - - - 0.0000000000000000000000000000119 131.0
YYD3_k127_808875_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K03793 - 1.5.1.33 0.00000002713 57.0
YYD3_k127_843815_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 442.0
YYD3_k127_843815_1 helicase K03724 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003849 366.0
YYD3_k127_843815_2 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000001878 226.0
YYD3_k127_843815_3 MafB19-like deaminase K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.33 0.00000000000000000000000000000000000000006661 162.0
YYD3_k127_843815_4 Belongs to the 'phage' integrase family K07484 - - 0.00000003111 63.0
YYD3_k127_843815_6 Belongs to the peptidase S8 family K01337,K01387,K05994,K08604,K14645,K20276 - 3.4.11.10,3.4.21.50,3.4.24.25,3.4.24.3 0.00008761 51.0
YYD3_k127_85530_0 pyrroloquinoline quinone binding - - - 5.949e-198 640.0
YYD3_k127_85530_1 Thiol-activated cytolysin K11031 - - 0.0000000000000000000000000000000000000000000000000000000000193 226.0
YYD3_k127_85530_2 Photosynthesis system II assembly factor YCF48 - - - 0.00000001054 68.0
YYD3_k127_85530_3 - - - - 0.00003701 54.0
YYD3_k127_873626_0 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002066 262.0
YYD3_k127_873626_1 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000008859 135.0
YYD3_k127_873626_2 PFAM Methyltransferase type 11 - - - 0.00000000000001801 85.0
YYD3_k127_873626_3 NfeD-like C-terminal, partner-binding - - - 0.0000008791 57.0
YYD3_k127_873626_4 Glycosyl transferases group 1 - - - 0.00000109 53.0
YYD3_k127_8804_0 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001025 298.0
YYD3_k127_8804_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000008091 196.0
YYD3_k127_8804_2 TonB-dependent receptor K01179 - 3.2.1.4 0.00002369 57.0
YYD3_k127_884434_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 338.0
YYD3_k127_884434_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000003733 226.0
YYD3_k127_884434_2 - - - - 0.0000000000000000000000000000000000000000000000000000000002307 218.0
YYD3_k127_884434_3 - - - - 0.0000000000000000000000000000000000000000000000001327 185.0
YYD3_k127_888371_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.641e-252 787.0
YYD3_k127_888371_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 350.0
YYD3_k127_888371_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000001862 140.0
YYD3_k127_888371_3 response regulator K07713 - - 0.00000000000000002147 85.0
YYD3_k127_908115_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 577.0
YYD3_k127_908115_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 424.0
YYD3_k127_908115_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000002829 97.0
YYD3_k127_908115_3 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000002242 79.0
YYD3_k127_90829_0 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000001319 146.0
YYD3_k127_90829_1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding - - - 0.0000000005848 72.0
YYD3_k127_90829_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000001543 70.0
YYD3_k127_932594_0 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.00000000001807 78.0
YYD3_k127_934442_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 351.0
YYD3_k127_934442_1 Zinc-uptake complex component A periplasmic K09815 - - 0.0000000000000000000003624 111.0
YYD3_k127_934442_2 Belongs to the Fur family K03711 - - 0.0000000000000000002157 100.0
YYD3_k127_934442_3 pfam abc K09695 - - 0.000000000001169 78.0
YYD3_k127_953952_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 466.0
YYD3_k127_953952_1 Cytochrome c554 and c-prime K03620 - - 0.00000000000000000000000000000000000000000000000000000000000000000003849 261.0
YYD3_k127_953952_2 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.00000000000000000000000000000000000000000007297 166.0
YYD3_k127_953952_3 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000003499 142.0
YYD3_k127_954479_0 LVIVD repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007058 347.0
YYD3_k127_954479_1 glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.00000000000000000000000000000000000000000000000000000001254 200.0
YYD3_k127_954479_2 Zinc metalloprotease (Elastase) - - - 0.000000000000000000000000000000000000000000000000000000013 224.0
YYD3_k127_954479_3 - - - - 0.0000000000000000000000000000003896 137.0
YYD3_k127_954479_4 protein secretion - - - 0.0000000000008761 76.0
YYD3_k127_954479_5 Sulfate permease family - - - 0.0000000000468 64.0
YYD3_k127_954479_6 Hep Hag repeat protein - - - 0.0000000006724 71.0
YYD3_k127_954479_7 Belongs to the glycosyl hydrolase 30 family K15924 - 3.2.1.136 0.0004948 53.0
YYD3_k127_959577_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 568.0
YYD3_k127_959577_1 Homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000006476 192.0
YYD3_k127_959577_2 Periplasmic or secreted lipoprotein - - - 0.0000000007253 70.0
YYD3_k127_96576_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 334.0
YYD3_k127_96576_1 PFAM peptidase S58, DmpA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 305.0
YYD3_k127_96576_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 304.0
YYD3_k127_96576_3 Beta-lactamase - - - 0.000000000000000000000146 111.0
YYD3_k127_96576_4 - - - - 0.0000006627 60.0
YYD3_k127_96576_5 Lipid A biosynthesis K22311 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016746,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.3.1.265 0.0004463 51.0
YYD3_k127_966529_0 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 484.0
YYD3_k127_966529_1 MgtE intracellular N domain K02000,K05847 - 3.6.3.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000006947 270.0
YYD3_k127_966529_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000002342 195.0
YYD3_k127_966529_3 Alpha-2-Macroglobulin K06894 - - 0.00000000000000000000000000000001155 145.0
YYD3_k127_974639_0 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13308,K20429 GO:0005575,GO:0005576,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010106,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043207,GO:0044403,GO:0044419,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0075136,GO:0098771 2.6.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 293.0