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Overview

ID MAG04652
Name YYD3_bin.23
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Gemmatimonadales
Family GWC2-71-9
Genus JAICEH01
Species JAICEH01 sp035457305
Assembly information
Completeness (%) 58.12
Contamination (%) 1.51
GC content (%) 73.0
N50 (bp) 7,561
Genome size (bp) 1,628,345

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1531

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1051744_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0 1136.0
YYD3_k127_1051744_1 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC K06148,K16012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003205 391.0
YYD3_k127_1051744_2 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000102 255.0
YYD3_k127_1051744_4 PFAM Integrase, catalytic - - - 0.000001029 52.0
YYD3_k127_1073448_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007003 517.0
YYD3_k127_1073448_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000646 200.0
YYD3_k127_1073448_2 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000006485 169.0
YYD3_k127_1073448_3 - - - - 0.000000000000000000000000000000000565 137.0
YYD3_k127_1073448_4 - - - - 0.0000000000000000000000001567 113.0
YYD3_k127_1073448_5 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000001315 56.0
YYD3_k127_1098077_0 cAMP biosynthetic process K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 451.0
YYD3_k127_1098077_1 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 441.0
YYD3_k127_1098077_2 CHRD domain - - - 0.00000000000003011 81.0
YYD3_k127_1098077_3 protein kinase activity K12132 - 2.7.11.1 0.000000009546 57.0
YYD3_k127_1108966_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 1.567e-303 962.0
YYD3_k127_1108966_1 Zn_pept - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006143 440.0
YYD3_k127_1108966_2 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 436.0
YYD3_k127_1108966_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000005723 230.0
YYD3_k127_1108966_4 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000001714 202.0
YYD3_k127_1108966_5 Outer membrane efflux protein K12340 - - 0.0000000000000000000000000000000000000000008073 183.0
YYD3_k127_1108966_6 - - - - 0.0000000000000000000000000000165 129.0
YYD3_k127_1152663_0 alginic acid biosynthetic process - - - 5.861e-245 775.0
YYD3_k127_1152663_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008295 455.0
YYD3_k127_1152663_10 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000006431 143.0
YYD3_k127_1152663_11 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000007638 133.0
YYD3_k127_1152663_12 Rdx family K07401 - - 0.00000000004805 64.0
YYD3_k127_1152663_2 Anthranilate synthase component I, N terminal region K01657,K01665 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 377.0
YYD3_k127_1152663_3 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005516 261.0
YYD3_k127_1152663_4 with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000002909 242.0
YYD3_k127_1152663_5 Formiminotransferase-cyclodeaminase K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.00000000000000000000000000000000000000000000000000000000000000000004254 244.0
YYD3_k127_1152663_6 peptidyl-tyrosine sulfation K13992 - - 0.00000000000000000000000000000000000000000000000000000000000000002053 235.0
YYD3_k127_1152663_7 Atp-dependent helicase - - - 0.0000000000000000000000000000000000000000000000000000002713 197.0
YYD3_k127_1152663_8 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000002278 148.0
YYD3_k127_1152663_9 Belongs to the ompA family - - - 0.0000000000000000000000000000000000004632 152.0
YYD3_k127_1175114_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 503.0
YYD3_k127_1175114_1 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 351.0
YYD3_k127_1175114_2 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 340.0
YYD3_k127_1175114_3 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000003965 274.0
YYD3_k127_1175114_4 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000004708 243.0
YYD3_k127_1175114_5 MobA-like NTP transferase domain - - - 0.00000000000000000000000000000000000000000000000000000001699 212.0
YYD3_k127_1175114_6 Gluconate 2-dehydrogenase subunit 3 - - - 0.000000000000000000001523 104.0
YYD3_k127_1182577_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 572.0
YYD3_k127_1182577_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007523 505.0
YYD3_k127_1182577_2 Phenylalanine-4-hydroxylase K00500 GO:0003674,GO:0003824,GO:0004497,GO:0004505,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016705,GO:0016714,GO:0017144,GO:0019439,GO:0019752,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222 1.14.16.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 491.0
YYD3_k127_1182577_3 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 298.0
YYD3_k127_1182577_4 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000007203 187.0
YYD3_k127_1182577_5 AI-2E family transporter - - - 0.00000000000000000000000000000000000000002025 174.0
YYD3_k127_1182577_6 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000001708 134.0
YYD3_k127_1182577_7 ABC transporter K06158 - - 0.00000000000000000000000000000666 125.0
YYD3_k127_1281098_0 FMN binding - - - 2.996e-234 748.0
YYD3_k127_1281098_1 Cytidylyltransferase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006249 285.0
YYD3_k127_1281098_2 Iron hydrogenase small subunit K00123,K00336,K18332 - 1.12.1.3,1.17.1.9,1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000005358 252.0
YYD3_k127_1281098_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K18331 - 1.12.1.3 0.000000000000000000000000000000000000004183 151.0
YYD3_k127_12917_0 Formate dehydrogenase alpha subunit K00123,K05299 - 1.17.1.10,1.17.1.9 6.326e-231 750.0
YYD3_k127_12917_1 - - - - 0.000000000113 75.0
YYD3_k127_1335565_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 404.0
YYD3_k127_1335565_1 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000006268 251.0
YYD3_k127_1335565_10 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000001587 78.0
YYD3_k127_1335565_2 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000001916 241.0
YYD3_k127_1335565_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000001877 187.0
YYD3_k127_1335565_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000512 188.0
YYD3_k127_1335565_5 transcriptional regulator, ArsR family - - - 0.0000000000000000000000000000000000005441 163.0
YYD3_k127_1335565_6 4 iron, 4 sulfur cluster binding K02573 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000005506 142.0
YYD3_k127_1335565_7 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000005382 141.0
YYD3_k127_1335565_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000001275 110.0
YYD3_k127_1335565_9 Protein of unknown function, DUF481 - - - 0.00000000000000000005471 102.0
YYD3_k127_1388796_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 591.0
YYD3_k127_1388796_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 441.0
YYD3_k127_1388796_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 409.0
YYD3_k127_1388796_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 379.0
YYD3_k127_1388796_4 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 376.0
YYD3_k127_1388796_5 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000000000005564 199.0
YYD3_k127_1388796_6 Outer membrane protein beta-barrel domain - - - 0.00000000000000000008606 99.0
YYD3_k127_139389_0 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000003106 187.0
YYD3_k127_139389_1 Domain of unknown function (DUF892) - - - 0.000000000000000000000000000000000000003004 162.0
YYD3_k127_139389_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000002402 145.0
YYD3_k127_139389_3 Protein of unknown function (DUF4242) - - - 0.00000000000000000000000000000000008996 135.0
YYD3_k127_139389_4 positive regulation of type IV pilus biogenesis K07343 - - 0.00000000000000000000000001452 120.0
YYD3_k127_139389_5 - - - - 0.000000000000000000000001098 116.0
YYD3_k127_1397507_0 Asparaginase K01444 - 3.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 376.0
YYD3_k127_1397507_1 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000005703 265.0
YYD3_k127_1397507_2 Acyl-ACP thioesterase - - - 0.000000000000000000000000000000000000000003037 160.0
YYD3_k127_1397507_3 Thioredoxin - - - 0.0000000000000000000000000000000000006646 155.0
YYD3_k127_1397507_4 Calcineurin-like phosphoesterase - - - 0.00008768 54.0
YYD3_k127_1397507_5 Outer membrane protein beta-barrel domain - - - 0.0006346 50.0
YYD3_k127_1410475_0 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 455.0
YYD3_k127_1410475_1 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 383.0
YYD3_k127_1410475_2 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 340.0
YYD3_k127_1410475_3 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006096 329.0
YYD3_k127_1410475_4 - - - - 0.00000000000000000001716 106.0
YYD3_k127_1418918_0 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 431.0
YYD3_k127_1418918_1 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003453 268.0
YYD3_k127_1418918_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000509 286.0
YYD3_k127_1418918_3 ABC-type transport system involved in lysophospholipase L1 biosynthesis ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000001155 253.0
YYD3_k127_1418918_4 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.0000000000000000000000000000000000000000000000000000000000007293 223.0
YYD3_k127_1418918_5 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000001165 208.0
YYD3_k127_1418918_6 permease - - - 0.000000000000000000000000000000000000222 162.0
YYD3_k127_1418918_7 redox protein regulator of disulfide bond formation K04063 - - 0.000000000000000000000000000000001345 134.0
YYD3_k127_1418918_8 NHL repeat - - - 0.000000002047 72.0
YYD3_k127_1440111_0 SIS domain K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 374.0
YYD3_k127_1440111_1 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001659 288.0
YYD3_k127_1440111_2 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000007433 185.0
YYD3_k127_1440111_3 DAHP synthetase I family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000171 158.0
YYD3_k127_1440111_4 - - - - 0.0000000000000000000000000000000000000005665 169.0
YYD3_k127_1440111_5 Lipopolysaccharide-assembly, LptC-related - - - 0.00000000000000002956 95.0
YYD3_k127_1444325_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 3.315e-228 744.0
YYD3_k127_1444325_1 ABC transporter transmembrane region K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 618.0
YYD3_k127_1444325_2 Aldehyde dehydrogenase family K00154 - 1.2.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005146 432.0
YYD3_k127_1444325_3 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 298.0
YYD3_k127_1444325_4 lysyltransferase activity K07027 - - 0.0000000000000000000002336 109.0
YYD3_k127_1444325_5 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000005502 109.0
YYD3_k127_1449665_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003247 600.0
YYD3_k127_1449665_1 PFAM Cys Met metabolism pyridoxal-phosphate- dependent protein K01739,K01758,K01761 - 2.5.1.48,4.4.1.1,4.4.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008578 537.0
YYD3_k127_1449665_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000001496 134.0
YYD3_k127_1449665_3 Zincin-like metallopeptidase - - - 0.00000000000003693 86.0
YYD3_k127_1521122_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.871e-281 891.0
YYD3_k127_1521122_1 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 604.0
YYD3_k127_1521122_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 593.0
YYD3_k127_1521122_3 Zinc dependent phospholipase C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 317.0
YYD3_k127_1521122_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000006823 203.0
YYD3_k127_1521122_5 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.0000000000000000000000000000000000000000002719 170.0
YYD3_k127_1521122_6 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000004451 119.0
YYD3_k127_1521122_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000009373 106.0
YYD3_k127_1521122_8 Protein of unknown function (DUF503) K09764 - - 0.00000000001584 69.0
YYD3_k127_1521122_9 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family - - - 0.00000002218 63.0
YYD3_k127_1529475_0 TonB dependent receptor - - - 8.643e-238 766.0
YYD3_k127_1529475_1 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368 413.0
YYD3_k127_1529475_2 - - - - 0.00000000000000000000000000009277 130.0
YYD3_k127_1555651_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 2.277e-212 682.0
YYD3_k127_1555651_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 5.049e-196 623.0
YYD3_k127_1555651_10 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000009136 230.0
YYD3_k127_1555651_11 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000000000416 220.0
YYD3_k127_1555651_12 - - - - 0.00000000000000000000000000000001623 139.0
YYD3_k127_1555651_13 rod shape-determining protein MreD K03571 - - 0.00000000000000000000000000003027 124.0
YYD3_k127_1555651_14 (AIR) carboxylase K06898 - - 0.0000000000000009982 87.0
YYD3_k127_1555651_2 NAD(P)-binding Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 527.0
YYD3_k127_1555651_3 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007199 542.0
YYD3_k127_1555651_4 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 446.0
YYD3_k127_1555651_5 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 456.0
YYD3_k127_1555651_6 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007895 417.0
YYD3_k127_1555651_7 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 379.0
YYD3_k127_1555651_8 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000658 355.0
YYD3_k127_1555651_9 Peptidase family S41 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005401 262.0
YYD3_k127_1600472_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008594 606.0
YYD3_k127_1600472_1 FAD dependent oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000971 309.0
YYD3_k127_1600472_10 Cupin 2, conserved barrel domain protein - - - 0.000000000000112 85.0
YYD3_k127_1600472_2 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000494 285.0
YYD3_k127_1600472_3 Glycosyltransferase Family 4 K14335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001709 302.0
YYD3_k127_1600472_4 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000009398 219.0
YYD3_k127_1600472_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000003189 201.0
YYD3_k127_1600472_6 - - - - 0.00000000000000000000000000000000000000000000000000001612 214.0
YYD3_k127_1600472_7 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000001206 142.0
YYD3_k127_1600472_8 Short-chain dehydrogenase reductase sdr - - - 0.0000000000000000000000000002289 123.0
YYD3_k127_1600472_9 - - - - 0.00000000000000002313 89.0
YYD3_k127_1647855_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002836 308.0
YYD3_k127_1647855_1 CYTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003755 267.0
YYD3_k127_1647855_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000005552 115.0
YYD3_k127_1648583_0 decarboxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 429.0
YYD3_k127_1648583_1 Type I phosphodiesterase / nucleotide pyrophosphatase K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 387.0
YYD3_k127_1648583_2 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000002051 164.0
YYD3_k127_1684605_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 580.0
YYD3_k127_1684605_1 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003574 412.0
YYD3_k127_1734286_0 UDP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009213 236.0
YYD3_k127_1734286_1 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000001036 194.0
YYD3_k127_1734286_2 metalloendopeptidase activity K03799 - - 0.0000000000000000000000000000000000000000000000005454 188.0
YYD3_k127_1734286_3 MerR HTH family regulatory protein - - - 0.0000000000000000000000000000000002276 142.0
YYD3_k127_1734286_4 Bacterial regulatory protein, Fis family K02688,K10941,K11914,K21405 - - 0.00000001102 62.0
YYD3_k127_1734286_5 Type II transport protein GspH K08084 - - 0.0000002297 59.0
YYD3_k127_1734286_6 Endonuclease/Exonuclease/phosphatase family - - - 0.0000008969 51.0
YYD3_k127_175188_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 325.0
YYD3_k127_175188_1 Histidine kinase K13598 - 2.7.13.3 0.00000000000000000000000005716 121.0
YYD3_k127_175188_2 Tetratricopeptide repeat - - - 0.00000000000003758 84.0
YYD3_k127_175188_3 Transcriptional regulator - - - 0.0000001454 56.0
YYD3_k127_1754786_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1091.0
YYD3_k127_1754786_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.000000000000000000000000000000000000002268 155.0
YYD3_k127_1754786_2 Outer membrane lipoprotein K05807 - - 0.00000000000000000000000000000000000000375 167.0
YYD3_k127_1754786_3 TPR repeat - - - 0.00000000000008541 77.0
YYD3_k127_1858566_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 545.0
YYD3_k127_1858566_1 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 486.0
YYD3_k127_1858566_2 Signal transduction histidine kinase K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 455.0
YYD3_k127_1858566_3 Enoyl-(Acyl carrier protein) reductase K16066 - 1.1.1.381 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 411.0
YYD3_k127_1858566_4 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000000001439 80.0
YYD3_k127_1863804_0 B12 binding domain K00548 - 2.1.1.13 0.0 1517.0
YYD3_k127_1863804_1 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 8.154e-228 728.0
YYD3_k127_1863804_2 Dehydrogenase K00248,K09478 - 1.3.8.1,1.3.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006953 500.0
YYD3_k127_1863804_3 Fatty acid desaturase K03921 - 1.14.19.11,1.14.19.2,1.14.19.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 415.0
YYD3_k127_1863804_4 C4-dicarboxylate anaerobic carrier - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 402.0
YYD3_k127_1863804_5 YGGT family K02221 - - 0.000000000000000000000000000005524 131.0
YYD3_k127_1863804_6 Belongs to the UPF0235 family K09131 - - 0.000000000000000000000344 108.0
YYD3_k127_1863804_7 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000009903 63.0
YYD3_k127_1863804_8 FR47-like protein K03789 - 2.3.1.128 0.0002641 50.0
YYD3_k127_1905669_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 530.0
YYD3_k127_1905669_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 441.0
YYD3_k127_1905669_2 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000000000005255 213.0
YYD3_k127_1905669_3 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000002049 201.0
YYD3_k127_1905669_4 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000002624 179.0
YYD3_k127_1905669_5 TonB-dependent Receptor Plug Domain - - - 0.00000000000000001079 98.0
YYD3_k127_1905669_6 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits - - - 0.0000000000000009141 79.0
YYD3_k127_190682_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1418.0
YYD3_k127_190682_1 PFAM V-type ATPase 116 kDa K02123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 343.0
YYD3_k127_190682_2 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 302.0
YYD3_k127_190682_3 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004109 263.0
YYD3_k127_190682_4 Vitamin K epoxide reductase family - - - 0.00000000000000000000000000000000000007589 147.0
YYD3_k127_190682_5 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000005848 82.0
YYD3_k127_190682_6 PQQ-like domain K00114 - 1.1.2.8 0.0004458 49.0
YYD3_k127_1970295_0 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009245 272.0
YYD3_k127_1970295_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000001666 242.0
YYD3_k127_1970295_2 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000002304 191.0
YYD3_k127_1975795_0 pilus organization - - - 0.0000000000000000000000000000000000000001437 163.0
YYD3_k127_1975795_1 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000003788 150.0
YYD3_k127_1975795_2 usher protein - - - 0.00000000000000000000000003799 126.0
YYD3_k127_1975795_5 Domain of unknown function (DUF4402) - - - 0.0004157 50.0
YYD3_k127_1978970_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 6.944e-313 1007.0
YYD3_k127_1978970_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 463.0
YYD3_k127_1978970_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 323.0
YYD3_k127_1978970_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006646 263.0
YYD3_k127_1978970_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000002431 194.0
YYD3_k127_1978970_5 Helix-turn-helix domain - - - 0.00000000000000000000002427 103.0
YYD3_k127_1978970_6 Helix-turn-helix domain - - - 0.00000000000000000001412 98.0
YYD3_k127_1978970_7 LppC putative lipoprotein - - - 0.0000000000000000005438 91.0
YYD3_k127_1995168_0 Protein of unknown function (DUF1295) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007662 263.0
YYD3_k127_1995168_1 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000005256 178.0
YYD3_k127_1995168_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000008368 164.0
YYD3_k127_1995168_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000469 124.0
YYD3_k127_1995168_4 - - - - 0.00000000000000007613 94.0
YYD3_k127_1995168_5 Copper binding proteins, plastocyanin/azurin family - - - 0.000007184 57.0
YYD3_k127_2019881_0 Malate synthase K01638 - 2.3.3.9 3.271e-218 690.0
YYD3_k127_2019881_1 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 1.853e-199 637.0
YYD3_k127_2019881_2 Isocitrate lyase family K01637 GO:0001101,GO:0001666,GO:0003674,GO:0003824,GO:0004451,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0006102,GO:0006950,GO:0008150,GO:0008152,GO:0009268,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0010033,GO:0010034,GO:0010447,GO:0016020,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0019899,GO:0032787,GO:0033554,GO:0033993,GO:0035375,GO:0036293,GO:0036294,GO:0042221,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046421,GO:0046487,GO:0046677,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0070482,GO:0070542,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071944,GO:0072350,GO:0075136,GO:0075141,GO:1901700 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 597.0
YYD3_k127_2019881_3 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 422.0
YYD3_k127_2019881_4 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004029 382.0
YYD3_k127_2019881_5 MOFRL family K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000004159 263.0
YYD3_k127_2019881_6 Helix-turn-helix domain K07729 - - 0.00000000000000000004027 90.0
YYD3_k127_2019881_7 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02768 - 2.7.1.202 0.00000000000000000005329 96.0
YYD3_k127_2019881_8 Pfam:DUF955 K07110 - - 0.00000000000001605 76.0
YYD3_k127_2020889_0 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 388.0
YYD3_k127_2020889_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000714 76.0
YYD3_k127_2026720_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 550.0
YYD3_k127_2026720_1 - K12065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 375.0
YYD3_k127_2026720_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000008685 272.0
YYD3_k127_2026720_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.000000000000000000000000000000000000000000000000000000002989 206.0
YYD3_k127_2026720_4 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000004837 160.0
YYD3_k127_2026720_5 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000002621 113.0
YYD3_k127_2026720_6 FMN_bind - - - 0.0000000000000000000003001 104.0
YYD3_k127_2026720_7 - - - - 0.0000000000000000003127 101.0
YYD3_k127_2089987_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 462.0
YYD3_k127_2089987_1 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008588 414.0
YYD3_k127_2089987_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007387 296.0
YYD3_k127_2089987_3 Conserved hypothetical protein (DUF2461) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001913 280.0
YYD3_k127_2089987_4 S4 RNA-binding domain K04762 - - 0.00000000000000000000000000000009042 129.0
YYD3_k127_2089987_5 Signal transduction histidine kinase, nitrogen specific, NtrB K02668 - 2.7.13.3 0.000000000000000000000006064 117.0
YYD3_k127_2104489_0 Bacterial membrane protein, YfhO - - - 1.111e-208 674.0
YYD3_k127_2104489_1 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 622.0
YYD3_k127_2104489_2 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336 355.0
YYD3_k127_2104489_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 349.0
YYD3_k127_2104489_4 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001701 269.0
YYD3_k127_2104489_5 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000005418 189.0
YYD3_k127_2104489_6 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000009945 130.0
YYD3_k127_2120892_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 495.0
YYD3_k127_2120892_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005339 448.0
YYD3_k127_2120892_2 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 396.0
YYD3_k127_2120892_3 Fe-S protein K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000001047 271.0
YYD3_k127_2120892_4 transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000001524 207.0
YYD3_k127_2120892_5 - - - - 0.000000000000000000000000105 109.0
YYD3_k127_2120892_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000005667 91.0
YYD3_k127_2178163_0 Bacterial regulatory protein, Fis family K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004116 423.0
YYD3_k127_2178163_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000004786 205.0
YYD3_k127_2178163_2 - - - - 0.00000000000000000000000000000002446 141.0
YYD3_k127_2178163_3 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000002601 125.0
YYD3_k127_2178163_4 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000006132 108.0
YYD3_k127_2178163_5 - - - - 0.0000000000000002295 92.0
YYD3_k127_2178163_6 protein transport across the cell outer membrane K02246,K08084 - - 0.00007821 53.0
YYD3_k127_2206916_0 2-oxoglutarate dehydrogenase C-terminal K00164 - 1.2.4.2 0.0 1253.0
YYD3_k127_2206916_1 Sodium/calcium exchanger protein K07300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 512.0
YYD3_k127_2206916_2 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000005486 226.0
YYD3_k127_2206916_3 VIT family - - - 0.00000000000000000000000000000000000000000000000000000002308 205.0
YYD3_k127_2206916_4 endonuclease activity - - - 0.00000000000000000000000000000000003568 139.0
YYD3_k127_2213604_0 ThiC-associated domain K03147 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 3.968e-255 793.0
YYD3_k127_2213604_1 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000000001427 214.0
YYD3_k127_2213604_2 Outer membrane efflux protein - - - 0.0000000000000000000000007823 108.0
YYD3_k127_2213604_3 SnoaL-like domain - - - 0.00000000000000004164 95.0
YYD3_k127_2216948_0 - - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008757,GO:0016278,GO:0016740,GO:0016741,GO:0032259 - 4.201e-230 766.0
YYD3_k127_2216948_1 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 482.0
YYD3_k127_2216948_2 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001393 297.0
YYD3_k127_2216948_3 Predicted permease YjgP/YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002918 274.0
YYD3_k127_2216948_4 - - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008757,GO:0016278,GO:0016740,GO:0016741,GO:0032259 - 0.0000000000000000000000000000000000000000000002382 186.0
YYD3_k127_2216948_5 PFAM Peptidase family M28 - - - 0.000000000000000000000006496 117.0
YYD3_k127_2281121_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 542.0
YYD3_k127_2281121_1 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 396.0
YYD3_k127_2281121_2 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 337.0
YYD3_k127_2281121_3 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 310.0
YYD3_k127_2281121_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 310.0
YYD3_k127_2281121_5 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001284 267.0
YYD3_k127_2281121_6 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.000000000000000000000000000000000000000000000000000002995 192.0
YYD3_k127_2312189_0 Transport of potassium into the cell K03549 - - 2.876e-231 732.0
YYD3_k127_2312189_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 358.0
YYD3_k127_2312189_2 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000006814 189.0
YYD3_k127_2312189_3 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000000007789 109.0
YYD3_k127_2312189_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000003035 96.0
YYD3_k127_2312189_6 - - - - 0.0000000000000000004188 89.0
YYD3_k127_2318439_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 1.14e-205 656.0
YYD3_k127_2318439_1 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000004391 143.0
YYD3_k127_2318439_2 PQQ-like domain - - - 0.000001015 59.0
YYD3_k127_2344242_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0016740,GO:0016765,GO:0019899,GO:0030312,GO:0035375,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 480.0
YYD3_k127_2344242_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 434.0
YYD3_k127_2344242_2 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000000000000001125 177.0
YYD3_k127_2344242_3 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000004581 138.0
YYD3_k127_2344242_4 Periplasmic binding protein K02016 - - 0.00000000000000000000000000001281 135.0
YYD3_k127_2344242_5 Cytochrome c - - - 0.0000000000000000000003151 110.0
YYD3_k127_2344242_6 phosphocarrier protein Hpr K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000002 95.0
YYD3_k127_2344242_7 Involved in chromosome partitioning - - - 0.000000002212 66.0
YYD3_k127_234462_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 4.676e-206 657.0
YYD3_k127_234462_1 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 379.0
YYD3_k127_234462_2 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000008549 264.0
YYD3_k127_2423949_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 8.252e-240 758.0
YYD3_k127_2423949_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 548.0
YYD3_k127_2423949_2 deoxyribose-phosphate aldolase activity K01619 - 4.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 463.0
YYD3_k127_2423949_3 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004081 411.0
YYD3_k127_2423949_4 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 367.0
YYD3_k127_2423949_5 Sugar (and other) transporter K08153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 354.0
YYD3_k127_2423949_6 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001664 287.0
YYD3_k127_2423949_7 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000000000000000000000004192 140.0
YYD3_k127_2526744_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 531.0
YYD3_k127_2526744_1 Domain of unknown function DUF87 K06915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 520.0
YYD3_k127_2526744_2 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 317.0
YYD3_k127_2526744_3 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006561 315.0
YYD3_k127_2526744_4 4Fe-4S single cluster domain K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005995 273.0
YYD3_k127_2526744_5 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.00000000000000000000000000000000000000000000000000005785 194.0
YYD3_k127_2526744_6 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.0000000001753 64.0
YYD3_k127_2534666_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 400.0
YYD3_k127_2534666_1 COG1668 ABC-type Na efflux pump, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 329.0
YYD3_k127_2534666_2 Putative stress-induced transcription regulator - - - 0.00000000000000000000000000000000000000000000000000003423 198.0
YYD3_k127_2536703_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005495 406.0
YYD3_k127_2536703_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005562 307.0
YYD3_k127_2563431_0 Protein of unknown function (DUF512) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 469.0
YYD3_k127_2563431_1 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 332.0
YYD3_k127_2563431_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 330.0
YYD3_k127_2563431_3 Acid phosphatase - GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000000000000000000000000001155 128.0
YYD3_k127_2563431_4 - - - - 0.000000000000009413 79.0
YYD3_k127_2565638_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 406.0
YYD3_k127_2565638_1 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000032 284.0
YYD3_k127_2565638_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000003181 245.0
YYD3_k127_2565638_3 Ham1 family K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000009074 192.0
YYD3_k127_2565638_4 Methyltransferase domain - - - 0.0000000000000000000000000000001891 129.0
YYD3_k127_2565638_5 chitin binding - - - 0.00000000000000000000000001694 122.0
YYD3_k127_2565638_6 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K18824 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.15 0.000000000001006 80.0
YYD3_k127_2565638_7 Methyltransferase domain - - - 0.00000000000142 79.0
YYD3_k127_2572478_0 nitrous-oxide reductase activity K00376,K02275 GO:0000041,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0015677,GO:0030001,GO:0042597,GO:0044464,GO:0051179,GO:0051234 1.7.2.4,1.9.3.1 1.41e-299 938.0
YYD3_k127_2572478_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009635 437.0
YYD3_k127_2572478_2 alginic acid biosynthetic process K07218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 402.0
YYD3_k127_2572478_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K19340 - - 0.00000000000000000000000000000000000000000000000000000000000000002601 234.0
YYD3_k127_2572478_4 lipoprotein involved in nitrous oxide reduction K19342 - - 0.000000000000000000000000000000000000000000000000000000000003289 217.0
YYD3_k127_2572478_5 ABC-2 family transporter protein K19341 - - 0.00000000000000000000000000000000000000000000000000000003785 216.0
YYD3_k127_2572478_6 Cytochrome c K15862 - 1.9.3.1 0.00000000000000000000000000000002652 132.0
YYD3_k127_2572478_7 2 iron, 2 sulfur cluster binding K13643 - - 0.00000000000000000000000001087 115.0
YYD3_k127_2572478_8 lipoprotein involved in nitrous oxide reduction K19342 - - 0.00000000000000005721 96.0
YYD3_k127_2645691_0 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 319.0
YYD3_k127_2645691_1 Copper resistance protein CopC K14166 - - 0.000000001202 69.0
YYD3_k127_2658327_0 cobalamin-transporting ATPase activity K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 460.0
YYD3_k127_2658327_1 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000005796 172.0
YYD3_k127_2658327_2 Elongation factor SelB, winged helix K03833 - - 0.000000000000000000000000000000002512 135.0
YYD3_k127_2658327_3 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000001714 130.0
YYD3_k127_2658327_4 amine dehydrogenase activity - - - 0.000000000000000003455 99.0
YYD3_k127_2669989_0 Galactose oxidase, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001024 276.0
YYD3_k127_2669989_1 Domain of unknown function (DUF4153) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000568 254.0
YYD3_k127_2669989_2 Bacterial transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000000000000000006439 220.0
YYD3_k127_2676134_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 6.792e-214 704.0
YYD3_k127_2676134_1 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006231 456.0
YYD3_k127_2676134_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009009 414.0
YYD3_k127_2676134_3 ABC transporter transmembrane region K18889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005678 311.0
YYD3_k127_2676134_4 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002362 273.0
YYD3_k127_2676134_5 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002386 256.0
YYD3_k127_2676134_6 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000000000682 156.0
YYD3_k127_2676134_7 amine dehydrogenase activity - - - 0.000000000000000000001488 102.0
YYD3_k127_2676134_8 - - - - 0.0000000000000000002572 96.0
YYD3_k127_2676134_9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000000103 68.0
YYD3_k127_2712484_0 Glycosyl transferase family 21 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000001535 270.0
YYD3_k127_2712484_1 Protein of unknown function (DUF2167) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005995 263.0
YYD3_k127_2712484_2 Microcin C7 resistance K01297 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009050,GO:0009056,GO:0009254,GO:0009987,GO:0016787,GO:0019538,GO:0030203,GO:0034641,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000005418 263.0
YYD3_k127_2712484_3 DNA restriction-modification system - - - 0.000000000000000000000000000000000000000000000000000000000007257 226.0
YYD3_k127_2712484_4 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.00000000000000000000000000000000000000000003461 177.0
YYD3_k127_2733513_0 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 582.0
YYD3_k127_2733513_1 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 393.0
YYD3_k127_2733513_2 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006158 372.0
YYD3_k127_2733513_3 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002935 279.0
YYD3_k127_2733513_4 - - - - 0.0000000000000000642 89.0
YYD3_k127_2733513_6 Hep Hag repeat protein - - - 0.000000128 60.0
YYD3_k127_2764582_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 2.258e-198 630.0
YYD3_k127_2764582_1 Domain of unknown function (DUF4382) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005813 274.0
YYD3_k127_2764582_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000000000002167 193.0
YYD3_k127_2764582_3 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000000000000000000006795 128.0
YYD3_k127_2764582_4 Rhomboid family - - - 0.00000000000000000000000000007238 127.0
YYD3_k127_2764582_5 - - - - 0.0000000000000000000000000006184 127.0
YYD3_k127_2764582_6 amine dehydrogenase activity - - - 0.000000000000000001408 102.0
YYD3_k127_2844862_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 532.0
YYD3_k127_2844862_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 424.0
YYD3_k127_2844862_10 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000001066 172.0
YYD3_k127_2844862_11 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000000002499 165.0
YYD3_k127_2844862_12 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000004898 166.0
YYD3_k127_2844862_13 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000004091 154.0
YYD3_k127_2844862_14 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000000000000000004809 132.0
YYD3_k127_2844862_15 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0008150,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000006834 130.0
YYD3_k127_2844862_16 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000003297 124.0
YYD3_k127_2844862_17 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000005645 106.0
YYD3_k127_2844862_18 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000001952 107.0
YYD3_k127_2844862_19 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000002003 99.0
YYD3_k127_2844862_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 358.0
YYD3_k127_2844862_20 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000467 74.0
YYD3_k127_2844862_21 Ribosomal L29 protein K02904 - - 0.0000000000002814 71.0
YYD3_k127_2844862_22 Ribosomal protein L30p/L7e K02907 - - 0.000000000001581 80.0
YYD3_k127_2844862_3 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005866 259.0
YYD3_k127_2844862_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002196 262.0
YYD3_k127_2844862_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002673 248.0
YYD3_k127_2844862_6 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006448 249.0
YYD3_k127_2844862_7 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000001369 246.0
YYD3_k127_2844862_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000009735 212.0
YYD3_k127_2844862_9 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000006967 209.0
YYD3_k127_2886123_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 409.0
YYD3_k127_2886123_1 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 377.0
YYD3_k127_2886123_2 Competence-damaged protein K03742 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 381.0
YYD3_k127_2886123_3 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003837 257.0
YYD3_k127_2886123_4 Roadblock/LC7 domain - - - 0.000000000000000000000000000000000000000000000000004137 186.0
YYD3_k127_2886123_5 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000003168 172.0
YYD3_k127_2886123_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000003923 128.0
YYD3_k127_2886123_7 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000008571 96.0
YYD3_k127_2886123_8 YbaB/EbfC DNA-binding family K09747 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000005857 84.0
YYD3_k127_2886123_9 - - - - 0.00000001339 65.0
YYD3_k127_3084957_0 Elongator protein 3, MiaB family, Radical SAM K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 500.0
YYD3_k127_3084957_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 486.0
YYD3_k127_3084957_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 389.0
YYD3_k127_3084957_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 344.0
YYD3_k127_3084957_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008044 298.0
YYD3_k127_3084957_5 Acyl transferase domain K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002722 304.0
YYD3_k127_3084957_6 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009521 294.0
YYD3_k127_3084957_7 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000007277 152.0
YYD3_k127_3084957_8 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000006229 114.0
YYD3_k127_3084957_9 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000001386 106.0
YYD3_k127_3125683_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000004567 220.0
YYD3_k127_3125683_1 ATPases associated with a variety of cellular activities K16785,K16786,K16787 - - 0.0000000000000000000000000000000000000002124 169.0
YYD3_k127_3125683_2 ECF transporter, substrate-specific component K16923 - - 0.000000000000000000000004786 111.0
YYD3_k127_3125683_3 Cobalt transport protein K16785 - - 0.00000000000000000002804 106.0
YYD3_k127_3125683_4 Cobalt transport protein K16785 - - 0.0000000000000001459 94.0
YYD3_k127_3129410_0 Sodium Bile acid symporter family K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 497.0
YYD3_k127_3129410_1 oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor K00311 GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043783,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070013,GO:0098573,GO:0098798,GO:1902494,GO:1990204 1.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 324.0
YYD3_k127_3129410_2 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000001649 201.0
YYD3_k127_3129410_3 diguanylate cyclase K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.0000000000000000000000000000000000007241 154.0
YYD3_k127_3129410_4 - - - - 0.00003617 53.0
YYD3_k127_3258206_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 411.0
YYD3_k127_3258206_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000000000000002936 195.0
YYD3_k127_3258206_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925,K07102 - 2.7.1.221 0.00000000000000000000000000001762 121.0
YYD3_k127_3258206_3 Glycoprotease family K14742 - - 0.0000000000000000000179 103.0
YYD3_k127_3258206_4 FR47-like protein K03789 - 2.3.1.128 0.00000000000000000006942 100.0
YYD3_k127_3258206_5 protein containing LysM domain - - - 0.00000000000001179 88.0
YYD3_k127_328245_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004604 588.0
YYD3_k127_328245_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 413.0
YYD3_k127_328245_2 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000006243 255.0
YYD3_k127_328245_3 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity K00303 - 1.5.3.1 0.0000000000000000000000000000000000000000000006078 178.0
YYD3_k127_328245_4 dioxygenase of extradiol dioxygenase family K06991 - - 0.00000000000000000006552 94.0
YYD3_k127_3409499_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 542.0
YYD3_k127_3409499_1 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004946 266.0
YYD3_k127_3409499_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000001246 240.0
YYD3_k127_3409499_3 Polymer-forming cytoskeletal - - - 0.0000000000000000000000009568 119.0
YYD3_k127_3409499_4 - - - - 0.000000666 58.0
YYD3_k127_3409499_5 membrane - - - 0.0000009238 62.0
YYD3_k127_3473512_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 7.035e-220 694.0
YYD3_k127_3473512_1 tungstate binding K15495 - - 0.0000000000000000000000000000000000000000000000000008117 196.0
YYD3_k127_3473512_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000007308 139.0
YYD3_k127_3479996_0 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000003141 274.0
YYD3_k127_3479996_1 zinc D-Ala-D-Ala carboxypeptidase activity K08641 - 3.4.13.22 0.000000000000000000000000000000000000000000000000000000000000000003777 235.0
YYD3_k127_3479996_2 Transcription elongation factor, N-terminal K03624 - - 0.0000000000000000000000000000000000000000001175 167.0
YYD3_k127_3479996_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - - - 0.000000000000000000000000000000000000006119 148.0
YYD3_k127_3479996_4 CarboxypepD_reg-like domain K02014 - - 0.00000000000000000000000000001817 128.0
YYD3_k127_3492458_0 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 450.0
YYD3_k127_3492458_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000002047 205.0
YYD3_k127_3492458_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000005465 99.0
YYD3_k127_3501035_0 Fructose-bisphosphate aldolase class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009917 545.0
YYD3_k127_3501035_1 Phosphoglucose isomerase K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 406.0
YYD3_k127_3501035_2 YtxH-like protein - - - 0.0004003 48.0
YYD3_k127_351590_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007943 379.0
YYD3_k127_351590_1 Iron Permease K07243 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003494 301.0
YYD3_k127_351590_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000685 244.0
YYD3_k127_351590_3 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000001872 198.0
YYD3_k127_351590_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000009653 86.0
YYD3_k127_3518065_0 Beta-eliminating lyase K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006264 568.0
YYD3_k127_3518065_1 Zinc-binding dehydrogenase K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 399.0
YYD3_k127_3518065_2 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.00000000000000000000000000000000000000000000000001479 188.0
YYD3_k127_3519286_0 Beta-lactamase class C and other penicillin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004538 347.0
YYD3_k127_3519286_1 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000006625 223.0
YYD3_k127_3519286_2 Mazg nucleotide pyrophosphohydrolase K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000001208 187.0
YYD3_k127_3519286_3 - - - - 0.000000000447 70.0
YYD3_k127_3519286_4 PFAM Bacterial protein of - - - 0.000009703 55.0
YYD3_k127_3534725_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 1.106e-269 856.0
YYD3_k127_3534725_1 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000692 398.0
YYD3_k127_3534725_2 Peptidase family M50 K06402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 327.0
YYD3_k127_3534725_3 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000004129 142.0
YYD3_k127_3534725_4 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000009014 118.0
YYD3_k127_3534725_5 SMART nuclease (SNase domain-containing protein) K01174 - 3.1.31.1 0.0000000000000000000005088 102.0
YYD3_k127_3567953_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006 - 2.7.9.1 0.0 1052.0
YYD3_k127_3567953_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 539.0
YYD3_k127_3567953_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005908 478.0
YYD3_k127_3567953_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000006492 224.0
YYD3_k127_3567953_4 Protein kinase domain K12132 - 2.7.11.1 0.0000000000004797 76.0
YYD3_k127_3567953_5 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.00000000185 63.0
YYD3_k127_3609179_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 6.376e-245 760.0
YYD3_k127_3609179_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 6.777e-228 721.0
YYD3_k127_3609179_2 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 320.0
YYD3_k127_3609179_3 Nucleoside H+ symporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 306.0
YYD3_k127_3609179_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 297.0
YYD3_k127_3609179_5 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002004 265.0
YYD3_k127_3609179_6 AAA domain, putative AbiEii toxin, Type IV TA system K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005096 256.0
YYD3_k127_3609179_7 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000221 248.0
YYD3_k127_3609179_8 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000009984 255.0
YYD3_k127_3609179_9 PFAM amino acid-binding ACT domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001723 227.0
YYD3_k127_3611077_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1334.0
YYD3_k127_3611077_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 308.0
YYD3_k127_3611077_2 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000007354 243.0
YYD3_k127_3611077_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000666 244.0
YYD3_k127_3611077_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000025 165.0
YYD3_k127_3611077_5 Biotin/lipoate A/B protein ligase family K03800 - 6.3.1.20 0.000000000000000000000000000000000000312 151.0
YYD3_k127_3611077_6 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000001437 89.0
YYD3_k127_3660954_0 ATP-grasp - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001419 279.0
YYD3_k127_3660954_1 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000003985 164.0
YYD3_k127_3660954_2 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000002686 109.0
YYD3_k127_3660954_3 polysaccharide deacetylase - - - 0.00000000000002011 83.0
YYD3_k127_3686478_0 Putative modulator of DNA gyrase K03568 - - 1.266e-286 885.0
YYD3_k127_3686478_1 Putative modulator of DNA gyrase K03592 - - 3.292e-217 706.0
YYD3_k127_3686478_2 TAP-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 413.0
YYD3_k127_3686478_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 397.0
YYD3_k127_3686478_4 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009163 391.0
YYD3_k127_3718394_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006436 493.0
YYD3_k127_3718394_1 DHH family K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004421 486.0
YYD3_k127_3718394_10 COG2172 Anti-sigma regulatory factor (Ser Thr protein kinase) K04757 - 2.7.11.1 0.000000000000000496 83.0
YYD3_k127_3718394_11 Zn-ribbon protein possibly nucleic acid-binding K07164 - - 0.000000000000002976 88.0
YYD3_k127_3718394_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 318.0
YYD3_k127_3718394_3 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 302.0
YYD3_k127_3718394_4 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008777 297.0
YYD3_k127_3718394_5 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000127 244.0
YYD3_k127_3718394_6 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000009455 228.0
YYD3_k127_3718394_7 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000004163 217.0
YYD3_k127_3718394_8 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000009323 191.0
YYD3_k127_3718394_9 STAS domain K04749 - - 0.000000000000000000000000000000000000000002346 157.0
YYD3_k127_3729085_0 Aminotransferase class-V K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 331.0
YYD3_k127_3729085_1 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 301.0
YYD3_k127_3729085_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000002988 158.0
YYD3_k127_3729085_3 Domain of unknown function (DUF4397) - - - 0.0000002849 61.0
YYD3_k127_3737294_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.924e-214 674.0
YYD3_k127_3737294_1 Sodium:neurotransmitter symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007918 293.0
YYD3_k127_3737294_2 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000005908 240.0
YYD3_k127_3737294_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000004873 132.0
YYD3_k127_3737294_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000002739 81.0
YYD3_k127_3737294_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000004152 66.0
YYD3_k127_3743795_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 573.0
YYD3_k127_3743795_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 540.0
YYD3_k127_3743795_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003234 289.0
YYD3_k127_3743795_3 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000004672 248.0
YYD3_k127_3743795_4 SIS domain K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000007495 216.0
YYD3_k127_3743795_5 protein tyrosine phosphatase activity K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000002287 188.0
YYD3_k127_3743795_6 Modulates RecA activity K03565 - - 0.000000000000000000000000197 114.0
YYD3_k127_3743795_7 Uncharacterised protein family UPF0102 K07460 - - 0.00000000000000000002021 93.0
YYD3_k127_374801_0 P2 response regulator binding domain K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 374.0
YYD3_k127_374801_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005957 291.0
YYD3_k127_374801_2 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000001011 206.0
YYD3_k127_374801_3 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000000000000000000000000000000000005054 200.0
YYD3_k127_374801_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000008047 164.0
YYD3_k127_374801_5 COG0835 Chemotaxis signal transduction protein K03408 - - 0.00000000003239 74.0
YYD3_k127_3755690_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 573.0
YYD3_k127_3755690_1 PFAM ABC-3 protein K11709 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007709 426.0
YYD3_k127_3755690_2 Belongs to the bacterial solute-binding protein 9 family K09818,K11707 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009412 372.0
YYD3_k127_3755690_3 PFAM ABC transporter related K11710 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 367.0
YYD3_k127_3755690_4 ABC 3 transport family K11708 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0042221,GO:0044464,GO:0050896,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 366.0
YYD3_k127_3755690_5 alkyl hydroperoxide reductase - - - 0.000000000000000000000002627 108.0
YYD3_k127_3755690_6 TonB-dependent receptor - - - 0.000000000009248 79.0
YYD3_k127_3755690_7 Tetratrico peptide repeat - - - 0.000002741 60.0
YYD3_k127_3819034_0 Protein export membrane protein - - - 0.0 1422.0
YYD3_k127_3819034_1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 1.684e-281 875.0
YYD3_k127_3819034_10 PBS lyase HEAT-like repeat - - - 0.0001042 54.0
YYD3_k127_3819034_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 618.0
YYD3_k127_3819034_3 Rhodanese Homology Domain K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000545 515.0
YYD3_k127_3819034_4 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002924 265.0
YYD3_k127_3819034_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000004014 261.0
YYD3_k127_3819034_6 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000001166 212.0
YYD3_k127_3819034_7 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000005432 127.0
YYD3_k127_3819034_8 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000006366 108.0
YYD3_k127_3819034_9 Protein of unknown function (DUF2892) - - - 0.000000000000000000007325 99.0
YYD3_k127_3856837_0 3'-5' exonuclease K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005934 371.0
YYD3_k127_3856837_1 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004956 269.0
YYD3_k127_3856837_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001836 259.0
YYD3_k127_3856837_3 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000313 217.0
YYD3_k127_3856837_4 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000005556 160.0
YYD3_k127_3856837_5 Iron-sulfur cluster assembly protein - - - 0.00000000000000000000000000000009081 128.0
YYD3_k127_3856837_6 Matrixin - - - 0.00000000000000000001272 101.0
YYD3_k127_3856837_7 Thioesterase K07107,K12500 - - 0.000000000000000001049 100.0
YYD3_k127_3862772_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 589.0
YYD3_k127_3862772_1 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008892 372.0
YYD3_k127_3862772_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 307.0
YYD3_k127_3862772_3 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001891 268.0
YYD3_k127_3862772_4 Lumazine binding domain K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000002562 220.0
YYD3_k127_3862772_5 - - - - 0.00000000000000000001166 104.0
YYD3_k127_3862772_6 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000003335 66.0
YYD3_k127_386880_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 3.999e-274 866.0
YYD3_k127_386880_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 8.905e-236 736.0
YYD3_k127_386880_2 amino acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008429 298.0
YYD3_k127_386880_3 Serine dehydratase beta chain K01752 - 4.3.1.17 0.000000000000000000000008454 100.0
YYD3_k127_3871790_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 527.0
YYD3_k127_3871790_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 511.0
YYD3_k127_3871790_10 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000003941 74.0
YYD3_k127_3871790_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 451.0
YYD3_k127_3871790_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000328 269.0
YYD3_k127_3871790_4 Amino acid kinase family K00926 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000193 248.0
YYD3_k127_3871790_5 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 - - - 0.00000000000000000000000000000000000000000000000002062 200.0
YYD3_k127_3871790_6 NDK K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000004834 177.0
YYD3_k127_3871790_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000488 132.0
YYD3_k127_3871790_8 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000001387 120.0
YYD3_k127_3871790_9 Uncharacterised protein family (UPF0182) K09118 - - 0.00000000000000000000000005669 125.0
YYD3_k127_3887332_0 Peptidase inhibitor I9 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003322 395.0
YYD3_k127_3887332_1 VWA domain containing CoxE-like protein K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 353.0
YYD3_k127_3887332_2 Sigma-70 region 2 K03088 - - 0.000000000000000007646 88.0
YYD3_k127_3887332_3 Intracellular proteinase inhibitor - - - 0.0000000397 63.0
YYD3_k127_3915148_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 1.507e-260 820.0
YYD3_k127_3915148_1 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007271 276.0
YYD3_k127_3915148_2 Putative ATP-binding cassette K01992 - - 0.000000000000000000000000000000000000000000000000002156 189.0
YYD3_k127_3915148_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000002369 156.0
YYD3_k127_3915148_4 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000001288 134.0
YYD3_k127_3915148_5 23S rRNA-intervening sequence protein - - - 0.000000000000000000006024 96.0
YYD3_k127_3915148_6 subunit of a heme lyase K02200 - - 0.00000000000000000002509 107.0
YYD3_k127_3915148_7 - - - - 0.000000000000007441 87.0
YYD3_k127_3915148_8 competence protein - - - 0.00002838 55.0
YYD3_k127_4000979_0 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009684 356.0
YYD3_k127_4000979_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000001873 190.0
YYD3_k127_4000979_2 Conserved TM helix - - - 0.00000000000000000000000000000000007734 149.0
YYD3_k127_4000979_3 SnoaL-like domain - - - 0.00000000000001078 88.0
YYD3_k127_4000979_4 Belongs to the glycosyl hydrolase 13 family K01176 - 3.2.1.1 0.00000005734 63.0
YYD3_k127_4050361_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 389.0
YYD3_k127_4050361_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 338.0
YYD3_k127_4050361_2 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008381 316.0
YYD3_k127_4050361_3 Transglutaminase/protease-like homologues - - - 0.000000000000000000002517 108.0
YYD3_k127_4050361_4 PFAM Appr-1-p processing domain protein - - - 0.0000004332 60.0
YYD3_k127_4050361_5 Tetratricopeptide TPR_2 repeat protein - - - 0.0001347 53.0
YYD3_k127_4069129_0 Acyl-CoA dehydrogenase, C-terminal domain K18244 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 565.0
YYD3_k127_4069129_1 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008487 380.0
YYD3_k127_4069129_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 352.0
YYD3_k127_4069129_3 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008731 299.0
YYD3_k127_4069129_4 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000966 201.0
YYD3_k127_4069129_5 Ribosomal L27 protein K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000672 138.0
YYD3_k127_4069129_6 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000003705 131.0
YYD3_k127_4069129_7 Peptidase family S58 K01266 - 3.4.11.19 0.0000000004449 60.0
YYD3_k127_4069129_8 - - - - 0.0006978 50.0
YYD3_k127_4161621_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008726 602.0
YYD3_k127_4161621_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000009688 215.0
YYD3_k127_4161621_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000009271 169.0
YYD3_k127_4161621_3 Two component regulator propeller - - - 0.00000000000000000000000003071 122.0
YYD3_k127_4161621_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000006756 106.0
YYD3_k127_4161621_5 Septum formation initiator K05589 - - 0.0000000008411 71.0
YYD3_k127_4165148_0 RimK-like ATP-grasp domain K03802 - 6.3.2.29,6.3.2.30 0.0 1139.0
YYD3_k127_4165148_1 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 586.0
YYD3_k127_4165148_2 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 527.0
YYD3_k127_4165148_3 Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation K01305 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008270,GO:0008798,GO:0016787,GO:0019538,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 458.0
YYD3_k127_4165148_4 Mur ligase middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008812 325.0
YYD3_k127_4165148_5 Peptidase family S51 K13282 - 3.4.15.6 0.000000000000000000000000000000000000000000000000000000000000000000000000002282 257.0
YYD3_k127_4165148_6 Outer membrane receptor K02014 - - 0.000000000000000000000000000000000000000001015 166.0
YYD3_k127_4165148_7 Peptidase family S51 K13282 - 3.4.15.6 0.000000000000000000000003928 104.0
YYD3_k127_4165148_8 GNAT family acetyltransferase K03802 - 6.3.2.29,6.3.2.30 0.000000000000000001499 89.0
YYD3_k127_4165148_9 Sigma-70 region 2 K03088 - - 0.00000000003577 64.0
YYD3_k127_4187194_0 LVIVD repeat - - - 5.623e-266 869.0
YYD3_k127_4187194_1 Alpha-L-fucosidase K01206 - 3.2.1.51 2.246e-200 631.0
YYD3_k127_4187194_10 DinB family - - - 0.0000000000000001909 84.0
YYD3_k127_4187194_2 Metallopeptidase family M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003964 406.0
YYD3_k127_4187194_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 316.0
YYD3_k127_4187194_4 Domain of unknown function (DUF305) - - - 0.00000000000000000000000000000000000000000000000000000000002337 214.0
YYD3_k127_4187194_5 Putative esterase K07017 - - 0.0000000000000000000000000000000000000000000000000000000005429 218.0
YYD3_k127_4187194_6 - - - - 0.0000000000000000000000000000000000000000000000000000017 202.0
YYD3_k127_4187194_7 RNA signal recognition particle 4.5S RNA - - - 0.0000000000000000000000000000000000000000000000002732 178.0
YYD3_k127_4187194_8 DinB family - - - 0.000000000000000000000000000000000000000000000001893 179.0
YYD3_k127_4187194_9 Bacterial protein of unknown function (DUF853) K06915 - - 0.0000000000000000000000000000000000514 144.0
YYD3_k127_4189438_0 Acts as a magnesium transporter K06213 - - 2.471e-228 720.0
YYD3_k127_4189438_1 Heat shock protein DnaJ domain protein K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 518.0
YYD3_k127_4189438_2 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 362.0
YYD3_k127_4189438_3 Transposase IS200 like - - - 0.00000000000000000000000008188 107.0
YYD3_k127_4206481_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 478.0
YYD3_k127_4206481_1 pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 348.0
YYD3_k127_4206481_10 - - - - 0.00000000000000002981 96.0
YYD3_k127_4206481_11 - - - - 0.0000000297 62.0
YYD3_k127_4206481_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 294.0
YYD3_k127_4206481_3 Multicopper oxidase K00368 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000002648 257.0
YYD3_k127_4206481_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000002339 187.0
YYD3_k127_4206481_5 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000001495 180.0
YYD3_k127_4206481_6 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000000000000000000162 177.0
YYD3_k127_4206481_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.00000000000000000000000000000000000000001034 164.0
YYD3_k127_4206481_8 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000009679 155.0
YYD3_k127_4206481_9 Thioredoxin-like domain K03671 - - 0.00000000000000000000000000000000000000171 149.0
YYD3_k127_4211946_0 LVIVD repeat - - - 2.621e-278 887.0
YYD3_k127_4211946_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 412.0
YYD3_k127_4211946_2 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 363.0
YYD3_k127_4211946_3 NhaP-type Na H and K H - - - 0.00000000000000000000000000000000000000000000000000000001152 208.0
YYD3_k127_4211946_4 haloacid dehalogenase-like hydrolase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000334 187.0
YYD3_k127_4211946_5 MatE K03327 - - 0.000000001742 62.0
YYD3_k127_4230748_0 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 289.0
YYD3_k127_4230748_1 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000342 244.0
YYD3_k127_4230748_2 surface antigen K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000001324 248.0
YYD3_k127_4230748_3 - - - - 0.000000000000000000000000000000216 131.0
YYD3_k127_4272017_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 419.0
YYD3_k127_4272017_1 Diacylglycerol kinase catalytic domain - - - 0.0000000000000000000000000000000000009787 161.0
YYD3_k127_4321402_0 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000546 209.0
YYD3_k127_4321402_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000002571 108.0
YYD3_k127_4332488_0 membrane organization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008909 460.0
YYD3_k127_4332488_1 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000202 179.0
YYD3_k127_4332488_2 SdiA-regulated - - - 0.0000000000001135 79.0
YYD3_k127_434341_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 1.484e-202 650.0
YYD3_k127_434341_1 ankyrin repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003757 592.0
YYD3_k127_434341_10 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000001153 230.0
YYD3_k127_434341_11 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000009849 203.0
YYD3_k127_434341_12 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000009311 188.0
YYD3_k127_434341_13 Thioesterase superfamily - - - 0.000000000000000000000000000000000000001806 152.0
YYD3_k127_434341_15 Ankyrin repeats (many copies) - - - 0.000000000000000000000000000008706 130.0
YYD3_k127_434341_16 conserved protein (DUF2203) - - - 0.000000000000000000000337 101.0
YYD3_k127_434341_17 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0000000000000002216 91.0
YYD3_k127_434341_18 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000004883 85.0
YYD3_k127_434341_19 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.000000000002281 81.0
YYD3_k127_434341_2 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003944 549.0
YYD3_k127_434341_20 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000009435 77.0
YYD3_k127_434341_21 Cytochrome c7 and related cytochrome c - - - 0.000009576 56.0
YYD3_k127_434341_3 Peptidase, M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005899 471.0
YYD3_k127_434341_4 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 402.0
YYD3_k127_434341_5 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 412.0
YYD3_k127_434341_6 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 362.0
YYD3_k127_434341_7 Deoxyribodipyrimidine photo-lyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 325.0
YYD3_k127_434341_8 FES K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000104 269.0
YYD3_k127_434341_9 PFAM ABC transporter related K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000001614 239.0
YYD3_k127_4346285_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.741e-210 680.0
YYD3_k127_4346285_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007866 501.0
YYD3_k127_4346285_2 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 442.0
YYD3_k127_4346285_3 Phage integrase, N-terminal SAM-like domain K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 294.0
YYD3_k127_4346285_4 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000004585 254.0
YYD3_k127_4346285_5 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000004228 230.0
YYD3_k127_4346285_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000834 138.0
YYD3_k127_4360114_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003251 274.0
YYD3_k127_4360114_1 ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component - - - 0.0000000000000000000000000000000000000000000000000004168 192.0
YYD3_k127_4360114_2 Winged helix DNA-binding domain - - - 0.000000000000000000000000000000000000009608 148.0
YYD3_k127_4360114_3 LytB protein K03527 - 1.17.7.4 0.0000000000000000000000000000000000009373 146.0
YYD3_k127_4360114_4 - - - - 0.0000000000000000000000001176 123.0
YYD3_k127_4360114_5 Thioesterase superfamily K07107 - - 0.0000000000000000000001098 108.0
YYD3_k127_4367907_0 Carboxyl transferase domain - - - 8.142e-240 755.0
YYD3_k127_4367907_1 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007936 277.0
YYD3_k127_4367907_2 B12 binding domain K01849 - 5.4.99.2 0.000000000000000000000000000000000209 132.0
YYD3_k127_4425341_0 transmembrane transporter activity K18138 - - 0.0 1550.0
YYD3_k127_4425341_1 radical SAM domain protein - - - 8.797e-207 658.0
YYD3_k127_4425341_2 efflux transmembrane transporter activity K18300,K18308 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 451.0
YYD3_k127_4425341_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 380.0
YYD3_k127_4425341_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000002188 147.0
YYD3_k127_4425341_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000001172 121.0
YYD3_k127_4425341_6 AraC-like ligand binding domain - - - 0.0000000000000000000000003048 109.0
YYD3_k127_4425341_7 helix_turn_helix, Lux Regulon - - - 0.000000000000000000006871 98.0
YYD3_k127_4425341_8 - - - - 0.00000000000000000001042 106.0
YYD3_k127_4425341_9 helix_turn_helix, Lux Regulon - - - 0.00000000000000009246 89.0
YYD3_k127_4432555_0 protein trimerization - - - 1.334e-229 722.0
YYD3_k127_4432555_1 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007442 381.0
YYD3_k127_4432555_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 301.0
YYD3_k127_4432555_3 Roadblock/LC7 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 294.0
YYD3_k127_4432555_4 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000002416 67.0
YYD3_k127_4435957_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004241 338.0
YYD3_k127_4435957_2 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 300.0
YYD3_k127_4473374_0 PhoD-like phosphatase K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 501.0
YYD3_k127_4473374_1 ErfK YbiS YcfS YnhG family protein K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 389.0
YYD3_k127_4473374_2 Protein of unknown function (DUF541) K09797 - - 0.000000000000000000000000000000000000000000000000001194 193.0
YYD3_k127_4473374_3 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000002096 177.0
YYD3_k127_4473374_4 Thioredoxin-like domain K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000001843 169.0
YYD3_k127_4473374_5 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000001333 167.0
YYD3_k127_4473374_6 - - - - 0.00000000000000000000001056 106.0
YYD3_k127_4473374_7 Lysin motif - - - 0.00000000000000002001 85.0
YYD3_k127_4489497_0 Uncharacterized protein family (UPF0051) K09014 - - 2.013e-250 792.0
YYD3_k127_4489497_1 ABC transporter K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 396.0
YYD3_k127_4489497_2 HTH domain - - - 0.00000000000000000000000000000000000001148 153.0
YYD3_k127_4489497_3 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component K09015 - - 0.0000000000005816 81.0
YYD3_k127_4489497_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00001681 48.0
YYD3_k127_449023_0 POT family K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006033 501.0
YYD3_k127_449023_1 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004137 391.0
YYD3_k127_449023_10 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000006317 147.0
YYD3_k127_449023_11 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000002581 111.0
YYD3_k127_449023_12 FAD dependent oxidoreductase K00285,K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19,1.4.5.1 0.0000000000000000000008911 107.0
YYD3_k127_449023_14 - - - - 0.0000000000000004942 85.0
YYD3_k127_449023_15 - - - - 0.0000004763 53.0
YYD3_k127_449023_2 histidine kinase A domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001404 269.0
YYD3_k127_449023_3 depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000003918 213.0
YYD3_k127_449023_4 - - - - 0.00000000000000000000000000000000000000000000000000000000122 212.0
YYD3_k127_449023_5 Glycosyl transferase family 2 K08301 - - 0.0000000000000000000000000000000000000000000000000000004045 202.0
YYD3_k127_449023_6 cytochrome c oxidase K02351,K02862 - - 0.0000000000000000000000000000000000000000000000000003643 198.0
YYD3_k127_449023_7 Copper chaperone PCu(A)C K03619,K07152,K09796 GO:0003674,GO:0005048,GO:0005488,GO:0033218,GO:0042277 - 0.00000000000000000000000000000000000000000000000002931 195.0
YYD3_k127_449023_8 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000004337 164.0
YYD3_k127_449023_9 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000002163 156.0
YYD3_k127_452549_0 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003675 373.0
YYD3_k127_452549_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 325.0
YYD3_k127_452549_10 Two component signalling adaptor domain K03408 - - 0.0001769 53.0
YYD3_k127_452549_2 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 293.0
YYD3_k127_452549_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006323 261.0
YYD3_k127_452549_4 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000001373 244.0
YYD3_k127_452549_5 - - - - 0.0000000000000000000000000000001188 139.0
YYD3_k127_452549_6 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.00000000000000000000000000002515 131.0
YYD3_k127_452549_7 Tetratricopeptide repeat - - - 0.000000000000000000000001802 120.0
YYD3_k127_452549_8 Chemotaxis signal transduction protein K03408 - - 0.0000000000000000000006741 109.0
YYD3_k127_452549_9 Domain of unknown function (DUF4388) - - - 0.00000000000000000001284 95.0
YYD3_k127_4549959_0 Anthranilate synthase component I, N terminal region K01657 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007895 442.0
YYD3_k127_4549959_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004974 412.0
YYD3_k127_4549959_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 353.0
YYD3_k127_4549959_3 methylisocitrate lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002738 267.0
YYD3_k127_4549959_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002362 243.0
YYD3_k127_4549959_5 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000002838 197.0
YYD3_k127_4549959_6 methylated-DNA-[protein]-cysteine S-methyltransferase activity K00567,K10778 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.00000000000000000000000000000000000000000000000000132 194.0
YYD3_k127_4549959_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000003422 187.0
YYD3_k127_4549959_8 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000005363 185.0
YYD3_k127_4549959_9 AlkA N-terminal domain K13529,K13530 - 3.2.2.21 0.000000000000000000000000000000002343 132.0
YYD3_k127_458932_0 Protein kinase domain K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000006857 261.0
YYD3_k127_458932_1 peptidyl-tyrosine sulfation - - - 0.00000000000000007626 95.0
YYD3_k127_458932_2 peptidyl-tyrosine sulfation - - - 0.000198 53.0
YYD3_k127_4614319_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 440.0
YYD3_k127_4614319_1 phosphorelay signal transduction system K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 398.0
YYD3_k127_4614319_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003018 294.0
YYD3_k127_4614319_3 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000001571 194.0
YYD3_k127_4614319_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000000344 101.0
YYD3_k127_4614319_6 - - - - 0.0003295 51.0
YYD3_k127_4619173_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 544.0
YYD3_k127_4619173_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000001175 251.0
YYD3_k127_4619173_2 DNA-binding transcription factor activity - - - 0.0000000000000000000000000000003107 128.0
YYD3_k127_4619173_3 impB/mucB/samB family K02346 - 2.7.7.7 0.000000000000000000000008685 106.0
YYD3_k127_4619173_4 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.0000000000000000000006792 97.0
YYD3_k127_4619173_5 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000369 46.0
YYD3_k127_4626250_0 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000408 287.0
YYD3_k127_4634348_0 DNA polymerase beta thumb K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 601.0
YYD3_k127_4634348_1 antibiotic catabolic process K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004552 430.0
YYD3_k127_4634348_10 Protein of unknown function (DUF664) - - - 0.000000000000000000000000000000000000000000000000001968 189.0
YYD3_k127_4634348_11 redox-sensitive transcriptional activator SoxR K13639 - - 0.000000000000000000000000000000000000000000000000002785 186.0
YYD3_k127_4634348_12 Cupin domain - - - 0.000000000000000000000000000000000000000000001016 183.0
YYD3_k127_4634348_13 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000003634 157.0
YYD3_k127_4634348_14 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000000000000000000000000000000007056 164.0
YYD3_k127_4634348_15 - - - - 0.000000000000000000000000000000000005078 143.0
YYD3_k127_4634348_16 Transcriptional regulator - - - 0.0000000000000000000007469 106.0
YYD3_k127_4634348_17 DNA-directed DNA polymerase activity K02347,K03581,K04477 - 3.1.11.5 0.000000000000000000002863 96.0
YYD3_k127_4634348_19 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.00000000000000001447 89.0
YYD3_k127_4634348_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 339.0
YYD3_k127_4634348_20 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000002749 79.0
YYD3_k127_4634348_21 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000249 72.0
YYD3_k127_4634348_22 UPF0391 membrane protein - - - 0.0000000001598 69.0
YYD3_k127_4634348_23 Endoribonuclease L-PSP - - - 0.000000002028 63.0
YYD3_k127_4634348_24 conserved protein (DUF2249) - - - 0.000000664 62.0
YYD3_k127_4634348_25 - - - - 0.0002187 46.0
YYD3_k127_4634348_26 Acetyltransferase (GNAT) family - - - 0.0002541 53.0
YYD3_k127_4634348_3 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000002985 291.0
YYD3_k127_4634348_4 Cytochrome C oxidase, cbb3-type, subunit III K00368 - 1.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000006713 270.0
YYD3_k127_4634348_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001133 246.0
YYD3_k127_4634348_6 phosphoribosyltransferase K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000009835 235.0
YYD3_k127_4634348_7 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor - - - 0.0000000000000000000000000000000000000000000000000000000000003692 234.0
YYD3_k127_4634348_8 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000000000000000000000008929 217.0
YYD3_k127_4634348_9 phosphoribosyltransferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000001368 211.0
YYD3_k127_4659672_0 tRNA synthetases class I (M) K01874 - 6.1.1.10 8.882e-197 638.0
YYD3_k127_4659672_1 PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 322.0
YYD3_k127_4659672_2 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000002488 199.0
YYD3_k127_4659672_3 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000001812 177.0
YYD3_k127_4659672_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000006959 133.0
YYD3_k127_4659672_5 PFAM DSBA oxidoreductase - - - 0.0000000000000000000000000000000009761 146.0
YYD3_k127_4659672_6 nucleotidyltransferase activity - - - 0.0000000000000000000000000002715 127.0
YYD3_k127_4659672_7 TPM domain K06872 - - 0.00000000000000000006305 105.0
YYD3_k127_4684408_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 473.0
YYD3_k127_4684408_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008957 324.0
YYD3_k127_4684408_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 300.0
YYD3_k127_4684408_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000481 298.0
YYD3_k127_4684408_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000002598 157.0
YYD3_k127_4684408_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000001071 97.0
YYD3_k127_4684408_6 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788,K10810 - 2.5.1.3,5.3.99.10 0.00000000000000000002651 100.0
YYD3_k127_4684408_7 COG1862 Preprotein translocase subunit YajC K03210 - - 0.00000000000001715 87.0
YYD3_k127_4684408_8 thiamine diphosphate biosynthetic process K03149,K03154 GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.00000000007091 73.0
YYD3_k127_4684408_9 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000001623 53.0
YYD3_k127_469467_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 509.0
YYD3_k127_469467_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 335.0
YYD3_k127_469467_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 319.0
YYD3_k127_469467_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008237 289.0
YYD3_k127_469467_4 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000002185 261.0
YYD3_k127_4738189_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1046.0
YYD3_k127_4738189_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007794 453.0
YYD3_k127_4738189_2 4Fe-4S binding domain K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009164 376.0
YYD3_k127_4738189_3 Nicastrin K01301 - 3.4.17.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 351.0
YYD3_k127_4738189_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005764 297.0
YYD3_k127_4738189_5 LVIVD repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003216 256.0
YYD3_k127_4738189_6 - K00241 - - 0.00000000000000000000000000000000000000000000000000000000001085 219.0
YYD3_k127_480368_0 Sodium/hydrogen exchanger family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 494.0
YYD3_k127_480368_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005102 246.0
YYD3_k127_480368_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000005552 117.0
YYD3_k127_480368_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000009661 85.0
YYD3_k127_4808309_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003945 582.0
YYD3_k127_4808309_1 secondary active sulfate transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004038 544.0
YYD3_k127_4808309_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000289 194.0
YYD3_k127_4808309_3 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000005935 183.0
YYD3_k127_4808309_4 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000005469 124.0
YYD3_k127_4808309_5 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.00000000000000000002468 94.0
YYD3_k127_4810783_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.0 3185.0
YYD3_k127_4814909_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000002606 220.0
YYD3_k127_4814909_1 pfam nlp p60 - - - 0.00000000000000000000000933 114.0
YYD3_k127_4840479_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 426.0
YYD3_k127_4840479_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 323.0
YYD3_k127_4840479_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 310.0
YYD3_k127_4840479_3 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000007316 240.0
YYD3_k127_4840479_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000003089 208.0
YYD3_k127_4840479_5 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000002246 186.0
YYD3_k127_4840479_6 N,N-dimethylaniline monooxygenase activity K11816 GO:0000003,GO:0000139,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0006082,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009414,GO:0009415,GO:0009628,GO:0009683,GO:0009684,GO:0009719,GO:0009725,GO:0009735,GO:0009741,GO:0009742,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009850,GO:0009851,GO:0009889,GO:0009909,GO:0009911,GO:0009987,GO:0010033,GO:0010035,GO:0010154,GO:0010229,GO:0010600,GO:0010817,GO:0012505,GO:0014070,GO:0016020,GO:0016053,GO:0016491,GO:0016705,GO:0016709,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019222,GO:0019438,GO:0019752,GO:0022414,GO:0023052,GO:0031090,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0031984,GO:0032350,GO:0032501,GO:0032502,GO:0032787,GO:0032870,GO:0033993,GO:0034641,GO:0034754,GO:0042175,GO:0042221,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046885,GO:0047434,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048545,GO:0048580,GO:0048582,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051716,GO:0055114,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0072330,GO:0090354,GO:0090567,GO:0098588,GO:0098791,GO:0098827,GO:0099402,GO:0103075,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:2000026,GO:2000241,GO:2000243 1.14.13.168 0.00003872 46.0
YYD3_k127_4893705_0 Peptidase dimerisation domain K12941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 584.0
YYD3_k127_4893705_1 Protein of unknown function DUF116 - - - 0.000000000000000000000002566 107.0
YYD3_k127_4893705_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000001779 67.0
YYD3_k127_4894387_0 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005086 444.0
YYD3_k127_4894387_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 332.0
YYD3_k127_4894387_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 323.0
YYD3_k127_4894387_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 327.0
YYD3_k127_4894387_4 Phosphate transport system permease protein PstA K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008998 304.0
YYD3_k127_4894387_5 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006949 263.0
YYD3_k127_4894387_6 negative regulation of phosphate transmembrane transport K02039 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000000000000000000000506 242.0
YYD3_k127_4894387_7 phosphate-selective porin O and P K07221 - - 0.0000007319 61.0
YYD3_k127_4904884_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 2.611e-206 662.0
YYD3_k127_4904884_1 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669 516.0
YYD3_k127_4904884_2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001939 482.0
YYD3_k127_4904884_3 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 410.0
YYD3_k127_4904884_4 Biotin biosynthesis protein BioY of Proteobacteria UniRef RepID B8F6V1_HAEPS K03523 - - 0.000000000000000000000004864 118.0
YYD3_k127_4904884_5 PFAM Abortive infection protein K07052 - - 0.00000000002261 76.0
YYD3_k127_4940418_0 Cellulose biosynthesis protein BcsQ K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004246 361.0
YYD3_k127_4940418_1 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003062 281.0
YYD3_k127_4940418_2 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003667 268.0
YYD3_k127_4940418_3 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002605 265.0
YYD3_k127_4940418_4 Peptidase, M23 - - - 0.000000000000000000005473 108.0
YYD3_k127_4940418_5 Polymer-forming cytoskeletal - - - 0.00000000007517 72.0
YYD3_k127_4940418_6 Globin - - - 0.00000007122 64.0
YYD3_k127_4940418_7 Glyoxalase-like domain - - - 0.000002147 57.0
YYD3_k127_4946493_0 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 569.0
YYD3_k127_4946493_1 metal-dependent phosphohydrolase, HD sub domain K03698 - - 0.000000000000000000000000000000000000000000000000000000000000000006428 250.0
YYD3_k127_4946493_2 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000001871 179.0
YYD3_k127_5033493_0 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 484.0
YYD3_k127_5033493_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 482.0
YYD3_k127_5033493_2 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 347.0
YYD3_k127_5033493_3 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 307.0
YYD3_k127_5033493_4 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000009811 205.0
YYD3_k127_5033493_5 DUF218 domain - - - 0.00000000000000000000000000000001097 148.0
YYD3_k127_5033493_6 - - - - 0.0000000000000000000000000004604 115.0
YYD3_k127_5033493_7 Transcriptional regulator - - - 0.0000000000000000000008814 111.0
YYD3_k127_5033493_8 - - - - 0.00002569 47.0
YYD3_k127_5033493_9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0001876 55.0
YYD3_k127_5088279_0 glutamine synthetase K01915 - 6.3.1.2 1.894e-258 814.0
YYD3_k127_5088279_1 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 356.0
YYD3_k127_5088279_2 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000167 263.0
YYD3_k127_5088279_3 Metal binding domain of Ada K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000001194 252.0
YYD3_k127_5088279_4 Pfam:DUF2305 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001639 244.0
YYD3_k127_5088279_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000006093 110.0
YYD3_k127_5088279_7 Protein conserved in bacteria - - - 0.0000000000001232 73.0
YYD3_k127_5133426_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003475 417.0
YYD3_k127_5133426_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 347.0
YYD3_k127_5133426_2 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 328.0
YYD3_k127_5133426_3 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000000000000000000008711 217.0
YYD3_k127_5133426_4 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000002517 215.0
YYD3_k127_5133426_5 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000002637 191.0
YYD3_k127_5193274_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008532 486.0
YYD3_k127_5193274_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 430.0
YYD3_k127_5193274_2 MacB-like periplasmic core domain K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 344.0
YYD3_k127_5193274_3 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001029 287.0
YYD3_k127_5193274_4 UvrB/uvrC motif K19411 - - 0.0000000000000000000000000000000007443 141.0
YYD3_k127_5193274_5 - - - - 0.0000000000000000009838 87.0
YYD3_k127_5193274_6 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.0000000000008909 81.0
YYD3_k127_5196105_0 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007562 524.0
YYD3_k127_5196105_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000006972 178.0
YYD3_k127_5231192_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.591e-196 625.0
YYD3_k127_5231192_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000001824 148.0
YYD3_k127_5231192_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000007953 133.0
YYD3_k127_5231192_3 - - - - 0.00000000000000000001856 107.0
YYD3_k127_5231192_4 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.00000000000000000417 96.0
YYD3_k127_5231192_5 TIGRFAM 6-pyruvoyl tetrahydropterin synthase QueD family protein K01737 - 4.1.2.50,4.2.3.12 0.000000000000000008779 91.0
YYD3_k127_5319777_0 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 312.0
YYD3_k127_5319777_1 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000004984 248.0
YYD3_k127_5319777_10 Sulfatase K01138 - - 0.000000000000001898 84.0
YYD3_k127_5319777_2 HD domain K07023 - - 0.000000000000000000000000000000000000000000000000000000000000004285 224.0
YYD3_k127_5319777_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000004931 215.0
YYD3_k127_5319777_4 Appr-1'-p processing enzyme - - - 0.00000000000000000000000000000000000000000000000000000001352 210.0
YYD3_k127_5319777_5 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000004064 190.0
YYD3_k127_5319777_6 Low affinity iron permease - - - 0.000000000000000000000000000000000000000000003789 178.0
YYD3_k127_5319777_7 O-methyltransferase - - - 0.00000000000000000000000000000000000000003564 154.0
YYD3_k127_5319777_8 Protein of unknown function (DUF3224) - - - 0.0000000000000000000000000000000000000004517 161.0
YYD3_k127_5319777_9 - - - - 0.0000000000000000000000000000002801 139.0
YYD3_k127_5351052_0 DNA-directed DNA polymerase K02337,K14162 - 2.7.7.7 2.412e-235 767.0
YYD3_k127_5351052_1 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 315.0
YYD3_k127_5357269_0 Phospholipase D. Active site motifs. K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 350.0
YYD3_k127_5357269_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000003045 214.0
YYD3_k127_5357269_2 Outer membrane efflux protein K12340 - - 0.0000000000000000000000000000000000000000000000000000000000004618 227.0
YYD3_k127_5357269_3 ECF sigma factor K03088 - - 0.0000000000000000000000000000003242 129.0
YYD3_k127_5357269_4 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000007886 137.0
YYD3_k127_5366677_0 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003738 399.0
YYD3_k127_5366677_1 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002805 246.0
YYD3_k127_5366677_2 Polysaccharide pyruvyl transferase - - - 0.0000000000000000000000000000000000000000046 173.0
YYD3_k127_5366677_3 Belongs to the GHMP kinase family K00849 - 2.7.1.6 0.00000003725 57.0
YYD3_k127_5370697_0 cellulose binding - - - 4.467e-220 688.0
YYD3_k127_5370697_1 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000005913 181.0
YYD3_k127_5370697_2 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000000000001702 170.0
YYD3_k127_5370697_3 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.00000000000000000000000000000004439 139.0
YYD3_k127_5370697_4 COG0262 Dihydrofolate reductase - - - 0.00000000000000000000001375 108.0
YYD3_k127_5370697_5 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000000004539 102.0
YYD3_k127_5370697_6 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.000000000000004121 82.0
YYD3_k127_5370697_7 DinB family - - - 0.0000000000003046 81.0
YYD3_k127_5370697_8 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000002674 59.0
YYD3_k127_5397709_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 393.0
YYD3_k127_5397709_1 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 387.0
YYD3_k127_5397709_2 PTS system sorbose subfamily IIB component K19507 - - 0.00000000000000000000000000000000000000000007832 170.0
YYD3_k127_5397709_3 PTS system mannose/fructose/sorbose family IID component K02796 - - 0.000000000000000000000000001699 126.0
YYD3_k127_5397709_4 PTS system sorbose-specific iic component K02795 - - 0.0000000000000000000006362 109.0
YYD3_k127_5397709_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000004133 91.0
YYD3_k127_5397709_6 system, fructose subfamily IIA component K02793,K02794 - 2.7.1.191 0.0000000003037 66.0
YYD3_k127_5397709_7 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.000007611 55.0
YYD3_k127_5434434_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 349.0
YYD3_k127_5434434_1 PFAM ABC transporter related K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006657 296.0
YYD3_k127_5434434_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000425 243.0
YYD3_k127_5434434_3 ATPase-coupled sulfate transmembrane transporter activity K15496 - - 0.000000000000000000000000000000000000000000000000000000000007803 218.0
YYD3_k127_5434434_4 Iron-storage protein K02217 - 1.16.3.2 0.000000000000000000000000000000000000000000000000249 181.0
YYD3_k127_5434434_5 PFAM Bacterial regulatory proteins, tetR family K09017,K22295 - - 0.000000000000000000000000000000000005541 145.0
YYD3_k127_543619_0 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 453.0
YYD3_k127_543619_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000001608 188.0
YYD3_k127_543619_2 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.000000000000000001107 100.0
YYD3_k127_543619_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000005219 98.0
YYD3_k127_5447219_0 Serine phosphatase RsbU, regulator of sigma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 322.0
YYD3_k127_5447219_1 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000002936 255.0
YYD3_k127_5447219_2 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000116 221.0
YYD3_k127_5447219_3 GAF domain-containing protein K08968 - 1.8.4.14 0.0000000000000000000000007308 107.0
YYD3_k127_5447219_4 PFAM Sulfate transporter antisigma-factor antagonist STAS K04749,K04757 - 2.7.11.1 0.000000000000002993 81.0
YYD3_k127_5447219_5 STAS domain K06378 - - 0.0000000000001147 75.0
YYD3_k127_5477770_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007771 497.0
YYD3_k127_5477770_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005351 421.0
YYD3_k127_5477770_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000001308 192.0
YYD3_k127_5477770_3 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000001423 143.0
YYD3_k127_5477770_4 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000001417 95.0
YYD3_k127_5477770_5 Polysaccharide biosynthesis protein K15856 - 1.1.1.281 0.0000000007669 71.0
YYD3_k127_549890_0 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000007285 201.0
YYD3_k127_549890_1 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000005135 154.0
YYD3_k127_549890_2 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000002482 114.0
YYD3_k127_549890_3 - - - - 0.000000000000000000000002118 113.0
YYD3_k127_549890_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000003604 99.0
YYD3_k127_549890_5 - - - - 0.00000000000000009631 93.0
YYD3_k127_549890_6 PFAM Dak phosphatase K07030 - - 0.00000006208 62.0
YYD3_k127_5529659_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002529 515.0
YYD3_k127_5529659_1 Glycosyl transferase 4-like K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 431.0
YYD3_k127_5529659_2 Protein of unknown function (DUF1194) K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 292.0
YYD3_k127_5529659_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000009721 266.0
YYD3_k127_5529659_4 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000102 237.0
YYD3_k127_5529659_5 von Willebrand factor type A domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000007427 230.0
YYD3_k127_5529659_6 Oxygen tolerance - - - 0.0000000000000000000000000000000000000000007094 181.0
YYD3_k127_5529659_7 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.00000000000000000000001755 107.0
YYD3_k127_5530180_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 516.0
YYD3_k127_5530180_1 transcriptional regulator K13633 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 422.0
YYD3_k127_5530180_2 FMN reductase (NADPH) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001798 282.0
YYD3_k127_5530180_3 Acetyltransferase (GNAT) family K03395 - 2.3.1.60 0.000000000000000000000000000000000000000000000000000000000003795 212.0
YYD3_k127_5530180_4 rhodanese-related sulfurtransferase - - - 0.00000000000000000000000000000000000000000000000000001003 198.0
YYD3_k127_5530180_5 His Kinase A (phosphoacceptor) domain - - - 0.0000000000526 64.0
YYD3_k127_5540764_0 cellulase activity - - - 7.779e-211 680.0
YYD3_k127_5540764_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 557.0
YYD3_k127_5540764_2 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005883 525.0
YYD3_k127_5540764_3 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007314 286.0
YYD3_k127_5540764_4 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000004421 289.0
YYD3_k127_5540764_5 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000007674 192.0
YYD3_k127_5540764_6 - - - - 0.000000000001379 77.0
YYD3_k127_5582765_0 Protein of unknown function (DUF2867) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 424.0
YYD3_k127_5582765_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 400.0
YYD3_k127_5582765_10 Belongs to the ompA family K03286 - - 0.0000607 53.0
YYD3_k127_5582765_2 cAMP biosynthetic process K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008697 307.0
YYD3_k127_5582765_3 lipocalin K03098 - - 0.000000000000000000000000000000000000000000004623 169.0
YYD3_k127_5582765_4 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000000000000000000004344 162.0
YYD3_k127_5582765_5 protein kinase activity - - - 0.00000000000000000000000000000000001148 140.0
YYD3_k127_5582765_6 PFAM regulatory protein, MerR K22491 - - 0.00000000000000000000000000000000002692 154.0
YYD3_k127_5582765_7 - - - - 0.000000000000000000000000000000008038 137.0
YYD3_k127_5582765_8 domain protein - - - 0.00000000000000009719 91.0
YYD3_k127_5582765_9 Domain of unknown function (DUF378) - - - 0.0000000000000006051 79.0
YYD3_k127_5591986_0 PFAM multicopper oxidase type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 408.0
YYD3_k127_5591986_1 transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 334.0
YYD3_k127_5591986_2 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005768 250.0
YYD3_k127_5591986_3 Protein involved in meta-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000004407 226.0
YYD3_k127_5591986_4 NUDIX domain - - - 0.00000001343 60.0
YYD3_k127_5599784_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.137e-194 614.0
YYD3_k127_5599784_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 422.0
YYD3_k127_5599784_10 Helix-turn-helix domain - - - 0.000000000000000000000000000000000003366 149.0
YYD3_k127_5599784_11 - - - - 0.000000004289 63.0
YYD3_k127_5599784_13 - - - - 0.0006667 44.0
YYD3_k127_5599784_2 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 413.0
YYD3_k127_5599784_3 chloride channel K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 378.0
YYD3_k127_5599784_4 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 349.0
YYD3_k127_5599784_5 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 306.0
YYD3_k127_5599784_6 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002355 252.0
YYD3_k127_5599784_7 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000001077 227.0
YYD3_k127_5599784_8 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000005031 211.0
YYD3_k127_5599784_9 NUDIX domain - - - 0.0000000000000000000000000000000000000000003342 169.0
YYD3_k127_5630898_0 O-acyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 369.0
YYD3_k127_5630898_1 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000002496 285.0
YYD3_k127_5630898_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0003668 48.0
YYD3_k127_5657866_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 567.0
YYD3_k127_5657866_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 475.0
YYD3_k127_5657866_2 Protein of unknown function (DUF819) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004556 400.0
YYD3_k127_5657866_3 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00499,K16319 - 1.14.12.1,1.14.15.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 374.0
YYD3_k127_5657866_4 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 322.0
YYD3_k127_5657866_5 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 337.0
YYD3_k127_5657866_6 Domain of unknown function (DUF4142) K08995 - - 0.0000000000002669 75.0
YYD3_k127_5663403_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 457.0
YYD3_k127_5663403_1 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 385.0
YYD3_k127_5663403_2 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 352.0
YYD3_k127_5663403_3 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000002012 216.0
YYD3_k127_5663403_4 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000000000003118 195.0
YYD3_k127_5663403_5 transport - - - 0.0000000000000000000001633 111.0
YYD3_k127_5663403_6 - - - - 0.00005856 55.0
YYD3_k127_5664156_0 FAD linked oxidases, C-terminal domain K18930 - - 1.038e-212 684.0
YYD3_k127_5664156_1 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 514.0
YYD3_k127_5664156_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007896 376.0
YYD3_k127_5664156_3 PFAM Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002573 289.0
YYD3_k127_5664156_4 FAD linked oxidases, C-terminal domain K18930 - - 0.00000000000000000000000000000000000000000002607 169.0
YYD3_k127_5664156_5 HxlR-like helix-turn-helix - - - 0.00000000000000000000806 95.0
YYD3_k127_567428_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 2.954e-243 757.0
YYD3_k127_567428_1 Involved in the tonB-independent uptake of proteins - - - 3.638e-199 655.0
YYD3_k127_567428_2 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 500.0
YYD3_k127_567428_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009592 322.0
YYD3_k127_567428_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000006628 147.0
YYD3_k127_567428_5 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000003462 104.0
YYD3_k127_5675520_0 PAS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006286 415.0
YYD3_k127_5675520_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 371.0
YYD3_k127_5675520_2 Transcriptional regulatory protein, C terminal K02483,K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 317.0
YYD3_k127_5675520_3 MotA/TolQ/ExbB proton channel family K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 291.0
YYD3_k127_5675520_4 PFAM Amylo-alpha-16-glucosidase - - - 0.000000000000000000000000000000000000000000000000000000000000844 230.0
YYD3_k127_5675520_5 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000000000000000000002162 161.0
YYD3_k127_5675520_6 Biopolymer transport protein ExbD/TolR K03560 - - 0.000000000000000000000000000005003 124.0
YYD3_k127_5675520_7 Biopolymer transport protein ExbD/TolR K03559 - - 0.000000000000000000000000000007774 123.0
YYD3_k127_5675520_8 Putative lumazine-binding - - - 0.0005125 48.0
YYD3_k127_5685156_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 496.0
YYD3_k127_5685156_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008535 418.0
YYD3_k127_5685156_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 340.0
YYD3_k127_5733872_0 Domain of unknown function (DUF5118) - - - 1.096e-298 936.0
YYD3_k127_5733872_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 429.0
YYD3_k127_5733872_10 Regulates arginine biosynthesis genes K03402 - - 0.000000000000000000004635 108.0
YYD3_k127_5733872_2 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K00857,K01920,K01935 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.21,6.3.2.3,6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 342.0
YYD3_k127_5733872_3 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 309.0
YYD3_k127_5733872_4 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 303.0
YYD3_k127_5733872_5 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008764 304.0
YYD3_k127_5733872_6 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000005253 251.0
YYD3_k127_5733872_7 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000005633 227.0
YYD3_k127_5733872_8 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000003086 221.0
YYD3_k127_5733872_9 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000308 154.0
YYD3_k127_5777246_0 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 358.0
YYD3_k127_5777246_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000171 82.0
YYD3_k127_5777246_2 peptidyl-tyrosine sulfation - - - 0.0000000001204 74.0
YYD3_k127_5797255_0 hydroxymethylglutaryl-CoA reductase (NADPH) activity K00021 - 1.1.1.34 2.535e-207 680.0
YYD3_k127_5797255_1 glycosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000104 254.0
YYD3_k127_5797255_2 HAD-hyrolase-like K06019 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000009832 216.0
YYD3_k127_5797255_3 SNF2 family N-terminal domain - - - 0.0000000000000000000000000000000759 144.0
YYD3_k127_5797255_4 Ndr family K01055 - 3.1.1.24 0.000000000000000000000000001828 131.0
YYD3_k127_5797255_5 Carbon monoxide dehydrogenase subunit G (CoxG) K09386 - - 0.0000000000009847 83.0
YYD3_k127_581346_0 Surface antigen K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 392.0
YYD3_k127_581346_1 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000003899 243.0
YYD3_k127_581346_2 Glycosyltransferase family 87 K13671 - - 0.000008244 55.0
YYD3_k127_581346_3 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0006552 52.0
YYD3_k127_5827156_0 Multicopper oxidase K04753 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 344.0
YYD3_k127_5827156_1 Bacterial regulatory proteins, tetR family K16137 - - 0.000000000000000000000000000000000000000000000000000000000000003869 228.0
YYD3_k127_5827156_10 - - - - 0.00000000000003223 81.0
YYD3_k127_5827156_11 Tripartite tricarboxylate transporter TctA family K07793 - - 0.000000006526 65.0
YYD3_k127_5827156_2 Cytochrome c K00376,K02305,K17760 - 1.1.9.1,1.7.2.4 0.0000000000000000000000000000000000000000000000000000000000002316 219.0
YYD3_k127_5827156_3 Cytochrome c K00376,K02305,K17760 - 1.1.9.1,1.7.2.4 0.0000000000000000000000000000000000000000000000000000000001182 229.0
YYD3_k127_5827156_4 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000003175 203.0
YYD3_k127_5827156_6 - - - - 0.0000000000000000000000000000000000000000000144 175.0
YYD3_k127_5827156_7 - - - - 0.000000000000000000000000000001083 136.0
YYD3_k127_5827156_8 - - - - 0.0000000000000000000000003276 119.0
YYD3_k127_5827156_9 - - - - 0.0000000000000000003338 94.0
YYD3_k127_588637_0 Transglycosylase K21464 - 2.4.1.129,3.4.16.4 2.789e-202 650.0
YYD3_k127_588637_1 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 494.0
YYD3_k127_588637_2 Predicted Zn-dependent protease (DUF2268) - - - 0.000000007086 66.0
YYD3_k127_588637_3 Heat shock protein K03668 - - 0.00000002165 67.0
YYD3_k127_5899668_0 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 385.0
YYD3_k127_5899668_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 379.0
YYD3_k127_5899668_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 377.0
YYD3_k127_5899668_3 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009363 336.0
YYD3_k127_5899668_4 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001532 262.0
YYD3_k127_5899668_5 creatininase K01470,K22232 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000001799 192.0
YYD3_k127_5899668_6 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000301 150.0
YYD3_k127_5934858_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 432.0
YYD3_k127_5934858_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000371 233.0
YYD3_k127_5934858_2 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000214 125.0
YYD3_k127_5949858_0 4Fe-4S dicluster domain - - - 3.956e-211 665.0
YYD3_k127_5949858_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 402.0
YYD3_k127_5949858_2 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000002918 206.0
YYD3_k127_5949858_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000003968 208.0
YYD3_k127_5949858_4 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000005561 200.0
YYD3_k127_5949858_5 short chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000004107 166.0
YYD3_k127_5949858_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.00000000000000000000000000000000000000001379 159.0
YYD3_k127_5949858_7 PFAM Hemerythrin HHE cation binding domain K09155 - - 0.0000000000000000000000000000000000000002981 157.0
YYD3_k127_5949858_8 PFAM Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000004649 122.0
YYD3_k127_5949858_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.0000000000000000002618 93.0
YYD3_k127_5972597_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000496 512.0
YYD3_k127_5972597_1 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 451.0
YYD3_k127_5972597_10 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily K03216 - 2.1.1.207 0.0000000000003667 75.0
YYD3_k127_5972597_11 ThiS family K03636 - - 0.00000000002762 68.0
YYD3_k127_5972597_2 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005219 378.0
YYD3_k127_5972597_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000007351 253.0
YYD3_k127_5972597_4 Belongs to the metal hydrolase YfiT family - - - 0.000000000000000000000000000000000000000000000000000000000000004756 233.0
YYD3_k127_5972597_5 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.0000000000000000000000000000000000000000000003295 169.0
YYD3_k127_5972597_6 Cold shock K03704 - - 0.000000000000000000000000000000006947 131.0
YYD3_k127_5972597_7 MoaE protein K03635 - 2.8.1.12 0.000000000000000000000000000000618 136.0
YYD3_k127_5972597_8 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000002387 92.0
YYD3_k127_5972597_9 Ribosomal protein S21 K02970 - - 0.0000000000000001402 81.0
YYD3_k127_5994897_0 ATP synthase alpha/beta family, beta-barrel domain K02118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 456.0
YYD3_k127_5994897_1 Protein of unknown function, DUF481 K07283 - - 0.00000000000000000000000000000009898 137.0
YYD3_k127_5994897_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.000000000000000000002256 102.0
YYD3_k127_5994897_3 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000008228 59.0
YYD3_k127_5994897_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00001066 57.0
YYD3_k127_6006184_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 437.0
YYD3_k127_6006184_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 364.0
YYD3_k127_6006184_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 367.0
YYD3_k127_6006184_3 Methylates ribosomal protein L11 K02687 - - 0.000000000000000000000000000000000001432 158.0
YYD3_k127_6006184_4 Yqey-like protein K09117 - - 0.00000000000000000000000000000008485 135.0
YYD3_k127_6006184_5 PFAM histidine triad (HIT) protein K02503 - - 0.0000000000000000000000000000001368 139.0
YYD3_k127_6006184_6 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000006227 108.0
YYD3_k127_6006184_7 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.000000000000001797 88.0
YYD3_k127_6035544_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009291 302.0
YYD3_k127_6035544_1 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000004437 164.0
YYD3_k127_6035544_2 Putative adhesin - - - 0.000000000000000002624 95.0
YYD3_k127_6047061_0 esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 376.0
YYD3_k127_6047061_1 anion-transporting ATPase - - - 0.00000000000000000000000000000000000000000000000000005034 210.0
YYD3_k127_6047061_2 CobQ/CobB/MinD/ParA nucleotide binding domain - - - 0.000000000000000000000000000000003925 142.0
YYD3_k127_6047061_3 PHB/PHA accumulation regulator DNA-binding domain - - - 0.0000000000000001091 90.0
YYD3_k127_6047061_4 Poly(hydroxyalcanoate) granule associated protein (phasin) - - - 0.00000000003517 74.0
YYD3_k127_6068177_0 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 562.0
YYD3_k127_6068177_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007123 414.0
YYD3_k127_6068177_2 Protein kinase domain K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000008037 235.0
YYD3_k127_6068177_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000006199 214.0
YYD3_k127_6068177_4 Gaf domain - - - 0.00000005275 66.0
YYD3_k127_6092387_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438 439.0
YYD3_k127_6092387_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 324.0
YYD3_k127_6092387_2 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000001911 165.0
YYD3_k127_6092387_3 Glycine cleavage T-protein C-terminal barrel domain K06980 - - 0.000000000000000000000000000006962 131.0
YYD3_k127_6092387_4 FAD binding domain K11472 - - 0.0000000000001261 83.0
YYD3_k127_6114968_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 9.905e-215 690.0
YYD3_k127_6114968_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 569.0
YYD3_k127_6114968_10 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000007926 168.0
YYD3_k127_6114968_11 - - - - 0.000000000000002151 83.0
YYD3_k127_6114968_12 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000008049 58.0
YYD3_k127_6114968_14 Roadblock LC7 family protein K07131 - - 0.0005459 48.0
YYD3_k127_6114968_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 482.0
YYD3_k127_6114968_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 479.0
YYD3_k127_6114968_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005993 485.0
YYD3_k127_6114968_5 Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 316.0
YYD3_k127_6114968_6 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001118 278.0
YYD3_k127_6114968_7 Sugar nucleotidyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000007183 244.0
YYD3_k127_6114968_8 ECF sigma factor - - - 0.000000000000000000000000000000000000000000004087 169.0
YYD3_k127_6114968_9 lytic transglycosylase activity K08309 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009274,GO:0016740,GO:0016757,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000005541 177.0
YYD3_k127_6181148_0 ketosteroid isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 386.0
YYD3_k127_6181148_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 327.0
YYD3_k127_6181148_2 Amylo-alpha-1,6-glucosidase - - - 0.0000000001281 73.0
YYD3_k127_6181148_3 FtsX-like permease family K02004 - - 0.000003961 58.0
YYD3_k127_6182836_0 TIGRFAM DNA polymerase III, alpha subunit K02337,K14162 - 2.7.7.7 3.113e-300 959.0
YYD3_k127_6182836_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 317.0
YYD3_k127_6182836_2 domain, Protein K01179,K07260,K13735 - 3.2.1.4,3.4.17.14 0.0000000000000000000000000000000000000000000000000000000000444 237.0
YYD3_k127_6182836_3 Putative aminopeptidase - - - 0.0000000000000000000000000000000000000000000000009257 194.0
YYD3_k127_6182836_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0005102 43.0
YYD3_k127_6187738_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1149.0
YYD3_k127_6187738_1 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000004731 241.0
YYD3_k127_6187738_2 Peptidase family S41 - - - 0.0000000000000000000000000000000000000000001538 178.0
YYD3_k127_6187738_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000004138 111.0
YYD3_k127_6187738_4 - - - - 0.000000000000000000000416 110.0
YYD3_k127_6187738_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000002897 91.0
YYD3_k127_6213129_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 364.0
YYD3_k127_6213129_1 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 363.0
YYD3_k127_6213129_2 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 290.0
YYD3_k127_6213129_3 - - - - 0.000000000000000000001113 105.0
YYD3_k127_6213129_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000008356 101.0
YYD3_k127_6213129_5 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000001692 92.0
YYD3_k127_6213129_6 HEAT repeat - - - 0.000000000000000004531 100.0
YYD3_k127_6213129_7 Transcriptional regulatory protein, C terminal - - - 0.00006048 55.0
YYD3_k127_6228607_0 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 371.0
YYD3_k127_6228607_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000003361 263.0
YYD3_k127_6228607_2 GIY-YIG type nucleases (URI domain) K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005217 258.0
YYD3_k127_6228607_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000002028 227.0
YYD3_k127_6228607_4 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000003322 137.0
YYD3_k127_6228607_5 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.00000009561 53.0
YYD3_k127_6228607_6 Peptidase family M23 - - - 0.0000004031 58.0
YYD3_k127_6228607_7 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000001591 59.0
YYD3_k127_6228607_8 Peptidase family M23 - - - 0.000007043 55.0
YYD3_k127_6231394_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 375.0
YYD3_k127_6231394_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 308.0
YYD3_k127_6231394_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000005692 171.0
YYD3_k127_6231394_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000268 152.0
YYD3_k127_6231394_4 PFAM glycosyl transferase family 9 K02843 - - 0.00000000000000000000000003736 110.0
YYD3_k127_6238067_0 lipid kinase activity - - - 0.0000000000000000000000000000000000000007991 160.0
YYD3_k127_6238067_1 Cupin domain - - - 0.0000000000000000000000000001123 125.0
YYD3_k127_6238067_2 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000001235 116.0
YYD3_k127_6238067_3 PFAM Bacterial regulatory proteins, tetR family - - - 0.000000000059 72.0
YYD3_k127_6240358_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000005098 270.0
YYD3_k127_6240358_1 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000001985 250.0
YYD3_k127_6240358_2 Glutathione peroxidase - - - 0.00000000000000000000000000000000000000003597 162.0
YYD3_k127_6240358_3 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.0000000000000014 91.0
YYD3_k127_6276660_0 Involved in the tonB-independent uptake of proteins - - - 5.942e-262 843.0
YYD3_k127_6276660_1 Dihydroxyacetone kinase family K07030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 307.0
YYD3_k127_6276660_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000001511 127.0
YYD3_k127_6312040_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 2.967e-242 758.0
YYD3_k127_6312040_1 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 574.0
YYD3_k127_6312040_11 Psort location Cytoplasmic, score - - - 0.0000000000001341 76.0
YYD3_k127_6312040_12 membrane - - - 0.0000000000001992 77.0
YYD3_k127_6312040_2 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000348 541.0
YYD3_k127_6312040_3 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000075 403.0
YYD3_k127_6312040_4 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 380.0
YYD3_k127_6312040_5 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005476 324.0
YYD3_k127_6312040_6 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000000000000001243 211.0
YYD3_k127_6312040_7 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000002995 173.0
YYD3_k127_6312040_8 - - - - 0.0000000000000000000000000000000009642 138.0
YYD3_k127_6312040_9 Predicted membrane protein (DUF2214) K08983 - - 0.00000000000000000000003184 104.0
YYD3_k127_6312220_0 COG0659 Sulfate permease and related transporters (MFS superfamily) K01673,K03321 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 545.0
YYD3_k127_6312220_1 Belongs to the peptidase S1B family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 524.0
YYD3_k127_6312220_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 434.0
YYD3_k127_6312220_3 - - - - 0.00000000000000000000000000000002057 134.0
YYD3_k127_6312220_4 DinB superfamily - - - 0.000000000000000671 87.0
YYD3_k127_6328013_0 Enoyl-CoA hydratase/isomerase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 6.893e-214 685.0
YYD3_k127_6328013_1 Peptidase family M28 - - - 2.134e-195 630.0
YYD3_k127_6328013_10 light absorption - - - 0.0000000000000000000000000000000000006063 143.0
YYD3_k127_6328013_11 Tellurite resistance protein TehB - - - 0.000000000000000000000002713 111.0
YYD3_k127_6328013_12 - - - - 0.000000001424 70.0
YYD3_k127_6328013_2 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 549.0
YYD3_k127_6328013_3 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 351.0
YYD3_k127_6328013_4 Cytochrome oxidase assembly protein K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001778 277.0
YYD3_k127_6328013_5 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000002059 259.0
YYD3_k127_6328013_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000003737 262.0
YYD3_k127_6328013_7 OmpA family - - - 0.000000000000000000000000000000000000000000000000002644 190.0
YYD3_k127_6328013_8 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000002711 148.0
YYD3_k127_6328013_9 DoxX K15977 - - 0.0000000000000000000000000000000000003343 146.0
YYD3_k127_6339173_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.671e-232 747.0
YYD3_k127_6339173_1 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 331.0
YYD3_k127_6349964_0 ABC transporter transmembrane region K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 472.0
YYD3_k127_6349964_1 PglZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 314.0
YYD3_k127_6349964_2 PglZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001762 283.0
YYD3_k127_6349964_3 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000005763 201.0
YYD3_k127_6349964_4 PFAM glycosyl transferase family 9 K02843 - - 0.0000000000000000000000000004763 123.0
YYD3_k127_6349964_5 DUF based on E. rectale Gene description (DUF3880) K06320 - - 0.000000000000000000001121 113.0
YYD3_k127_6349964_6 ribosomal protein - - - 0.00004371 53.0
YYD3_k127_639786_0 Belongs to the thiolase family K07508 - 2.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 404.0
YYD3_k127_639786_1 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 387.0
YYD3_k127_639786_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 316.0
YYD3_k127_639786_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000004152 184.0
YYD3_k127_639786_4 - - - - 0.00000000000000000000000001379 120.0
YYD3_k127_6466336_0 malic enzyme K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 5.852e-258 815.0
YYD3_k127_6466336_1 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 2.774e-224 707.0
YYD3_k127_6466336_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008154 323.0
YYD3_k127_6466336_3 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005712 273.0
YYD3_k127_6466336_4 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001332 269.0
YYD3_k127_6466336_5 ABC transporter K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003821 261.0
YYD3_k127_6466336_6 Part of the ABC transporter FtsEX involved in K09811 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004302 261.0
YYD3_k127_6466336_7 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000003834 231.0
YYD3_k127_6466336_8 Zinc-dependent metalloprotease - - - 0.0000002196 63.0
YYD3_k127_6466336_9 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0003408 51.0
YYD3_k127_6475400_0 cellulase activity - - - 8.849e-196 638.0
YYD3_k127_6475400_1 - - - - 0.00000000000000000000000001815 117.0
YYD3_k127_6475400_2 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00362,K05297 - 1.18.1.1,1.7.1.15 0.00000000000000000000002137 115.0
YYD3_k127_649962_0 COG0433 Predicted ATPase K06915 - - 4.986e-239 754.0
YYD3_k127_649962_1 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007008 338.0
YYD3_k127_649962_2 Aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007023 305.0
YYD3_k127_649962_3 COGs COG2380 conserved - - - 0.0000000000000000000000000000000000000492 156.0
YYD3_k127_6507599_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007147 490.0
YYD3_k127_6507599_1 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004551 457.0
YYD3_k127_6507599_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 424.0
YYD3_k127_6507599_3 protein related to plant photosystem II stability assembly factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000114 265.0
YYD3_k127_6507599_4 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000006586 160.0
YYD3_k127_6507599_5 D-aminopeptidase K16203 - - 0.000000000000000000000000000000000003821 150.0
YYD3_k127_6507599_6 SURF1 family K14998 - - 0.00000000000000000000000000000000897 139.0
YYD3_k127_6507599_7 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000004086 105.0
YYD3_k127_660223_0 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 392.0
YYD3_k127_660223_1 Oxygenase, catalysing oxidative methylation of damaged DNA K09990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001707 287.0
YYD3_k127_660223_2 Protein of unknown function (DUF1697) - - - 0.00000000000000000000000000000000000000003264 158.0
YYD3_k127_660223_3 Protein of unknown function (DUF3574) - - - 0.0000000000000000000000000000000000000002157 153.0
YYD3_k127_660223_4 AlkA N-terminal domain K13529 - 3.2.2.21 0.00000000000000000000000000000000009997 138.0
YYD3_k127_660223_5 Putative stress-induced transcription regulator - - - 0.00000000000000000000000006148 114.0
YYD3_k127_6603968_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004054 461.0
YYD3_k127_6603968_1 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005934 330.0
YYD3_k127_6603968_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000005177 269.0
YYD3_k127_6603968_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000012 241.0
YYD3_k127_6603968_4 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000006149 164.0
YYD3_k127_6603968_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000003497 151.0
YYD3_k127_6603968_6 LssY C-terminus - - - 0.00000000000000000000000000001359 123.0
YYD3_k127_6620719_0 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 353.0
YYD3_k127_6620719_1 Polyprenyl synthetase K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 349.0
YYD3_k127_6620719_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000001001 240.0
YYD3_k127_6620719_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000001428 191.0
YYD3_k127_6620719_4 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03770 - 5.2.1.8 0.00000000000000000000000004496 125.0
YYD3_k127_6620719_5 Domain of unknown function (DUF4321) - - - 0.00000000000000000003853 104.0
YYD3_k127_6620719_6 Tetratricopeptide repeat - - - 0.0000000000000000003068 102.0
YYD3_k127_6620719_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000001267 79.0
YYD3_k127_6657577_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 571.0
YYD3_k127_6657577_1 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 546.0
YYD3_k127_6657577_10 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000002034 193.0
YYD3_k127_6657577_11 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000002707 169.0
YYD3_k127_6657577_12 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000001727 95.0
YYD3_k127_6657577_13 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.00000000002616 74.0
YYD3_k127_6657577_2 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003757 384.0
YYD3_k127_6657577_3 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 386.0
YYD3_k127_6657577_4 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 324.0
YYD3_k127_6657577_5 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003473 274.0
YYD3_k127_6657577_6 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001003 256.0
YYD3_k127_6657577_7 HEAT repeats - - - 0.000000000000000000000000000000000000000000000000000000000000002241 239.0
YYD3_k127_6657577_8 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000003555 217.0
YYD3_k127_6657577_9 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000006596 226.0
YYD3_k127_6663780_0 C-terminus of AA_permease K03294 - - 1.075e-229 722.0
YYD3_k127_6663780_1 Sodium:solute symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007627 419.0
YYD3_k127_6663780_2 Glycosyl hydrolase family 3 C-terminal domain K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005873 415.0
YYD3_k127_6663780_3 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 319.0
YYD3_k127_6663780_4 Iron-sulphur cluster biosynthesis - - - 0.00000000000000000000000000000000000000004089 155.0
YYD3_k127_6663780_5 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000001859 123.0
YYD3_k127_6663780_6 BadF/BadG/BcrA/BcrD ATPase family - - - 0.0000000000000000000000002838 120.0
YYD3_k127_6663780_7 YwiC-like protein - - - 0.00000000000006101 76.0
YYD3_k127_6687391_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 465.0
YYD3_k127_6687391_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000002344 190.0
YYD3_k127_6687391_2 Lipopolysaccharide-assembly - - - 0.00000000000000000000000000000000000000002544 158.0
YYD3_k127_6687391_3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.0000000000000000000000000000000000000001462 161.0
YYD3_k127_6687391_4 Sodium/hydrogen exchanger family - - - 0.000000000000000000002699 100.0
YYD3_k127_6687391_5 - - - - 0.000002431 57.0
YYD3_k127_66942_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007763 431.0
YYD3_k127_66942_1 Putative esterase K07017 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 336.0
YYD3_k127_66942_2 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 301.0
YYD3_k127_66942_3 Biotin-lipoyl like K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 312.0
YYD3_k127_66942_4 protein homotetramerization - - - 0.000000000000000000000000000000000000000000000000000000000000009482 219.0
YYD3_k127_66942_5 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000008944 220.0
YYD3_k127_66942_6 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000002932 148.0
YYD3_k127_66942_7 - - - - 0.0000000000000000000000000000000000003823 145.0
YYD3_k127_66942_8 - - - - 0.0000000000000000000000000000000000004148 149.0
YYD3_k127_66942_9 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000000000000000000000000000006037 136.0
YYD3_k127_6694692_0 protein kinase activity - - - 4.081e-285 901.0
YYD3_k127_6694692_1 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 340.0
YYD3_k127_6694692_2 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000894 258.0
YYD3_k127_6715871_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 562.0
YYD3_k127_6715871_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 550.0
YYD3_k127_6715871_10 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000004799 67.0
YYD3_k127_6715871_11 Iron-binding zinc finger CDGSH type K05710 - - 0.000004396 59.0
YYD3_k127_6715871_2 Fumarylacetoacetase N-terminal K01555 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 509.0
YYD3_k127_6715871_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008684 378.0
YYD3_k127_6715871_4 Zn-dependent protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 352.0
YYD3_k127_6715871_5 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 339.0
YYD3_k127_6715871_6 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000003102 149.0
YYD3_k127_6715871_7 Rhomboid family - - - 0.000000000000000000000000000000000483 141.0
YYD3_k127_6715871_8 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000000000001721 129.0
YYD3_k127_6715871_9 Ribosomal protein L34 K02914 - - 0.0000000000000004046 78.0
YYD3_k127_67993_0 protein kinase activity - - - 5.746e-199 654.0
YYD3_k127_67993_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 569.0
YYD3_k127_67993_2 fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004916 341.0
YYD3_k127_67993_3 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004873 280.0
YYD3_k127_67993_4 - - - - 0.0000000000000000000000000000000000000009747 158.0
YYD3_k127_67993_5 protein kinase activity - - - 0.000000000000000000000000000000000000007523 156.0
YYD3_k127_67993_6 - - - - 0.000000000000000000000000000152 127.0
YYD3_k127_6807701_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1168.0
YYD3_k127_6807701_1 AcrB/AcrD/AcrF family K03296 - - 0.0 1064.0
YYD3_k127_6807701_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009479 439.0
YYD3_k127_6807701_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007611 385.0
YYD3_k127_6812573_0 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 297.0
YYD3_k127_6812573_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000006688 252.0
YYD3_k127_6812573_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000001279 198.0
YYD3_k127_6812573_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000003659 114.0
YYD3_k127_6812573_4 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000005774 109.0
YYD3_k127_6812573_5 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.0000000000000000000003249 104.0
YYD3_k127_6812573_6 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00007896 53.0
YYD3_k127_68591_0 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002009 258.0
YYD3_k127_68591_1 - - - - 0.00000000000000000000000000000000000000000000000000000007433 209.0
YYD3_k127_68591_2 Sugar-specific transcriptional regulator TrmB - - - 0.00000000008056 75.0
YYD3_k127_6874710_0 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 381.0
YYD3_k127_6874710_1 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 317.0
YYD3_k127_6874710_2 Phospholipid methyltransferase - - - 0.000000000000000000000000000000000009286 140.0
YYD3_k127_6874710_3 ferredoxin-NADP+ reductase activity - - - 0.00000000000000000000000000000007794 138.0
YYD3_k127_6874710_4 - - - - 0.000000000000000003819 101.0
YYD3_k127_692210_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 4.443e-301 937.0
YYD3_k127_692210_1 Belongs to the metallo-dependent hydrolases superfamily. HutI family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 512.0
YYD3_k127_692210_2 Belongs to the arginase family K01479,K12255 - 3.5.3.7,3.5.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 289.0
YYD3_k127_692210_3 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000001883 117.0
YYD3_k127_699296_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 4.111e-282 874.0
YYD3_k127_699296_1 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.032e-260 810.0
YYD3_k127_699296_2 Biotin carboxylase C-terminal domain K01941,K01961 - 6.3.4.14,6.3.4.6,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 475.0
YYD3_k127_699296_3 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000003359 124.0
YYD3_k127_699296_4 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.000000000000000448 92.0
YYD3_k127_75376_0 Required for chromosome condensation and partitioning K03529 - - 3.156e-275 889.0
YYD3_k127_75376_1 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 449.0
YYD3_k127_75376_2 PFAM NADP oxidoreductase coenzyme F420-dependent - - - 0.00000000000000000000000000000000000000000414 167.0
YYD3_k127_75376_3 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000007689 136.0
YYD3_k127_75376_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03749 - - 0.000003652 51.0
YYD3_k127_75376_5 tail specific protease K03797 - 3.4.21.102 0.0003521 45.0
YYD3_k127_807651_0 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 443.0
YYD3_k127_807651_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000007045 184.0
YYD3_k127_807651_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000006066 153.0
YYD3_k127_807651_3 Control of competence regulator ComK, YlbF/YmcA - - - 0.00000000000000000006045 94.0
YYD3_k127_834891_0 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 450.0
YYD3_k127_834891_1 CHAT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 314.0
YYD3_k127_834891_2 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002819 295.0
YYD3_k127_834891_3 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.000000000000000000000000000000000000000000000000003592 186.0
YYD3_k127_834891_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000002126 183.0
YYD3_k127_834891_5 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000001419 191.0
YYD3_k127_834891_6 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000269 102.0
YYD3_k127_888008_0 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007254 472.0
YYD3_k127_888008_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 418.0
YYD3_k127_888008_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000000000000005665 183.0
YYD3_k127_888008_3 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.0000000000000000000000000000003986 128.0
YYD3_k127_888008_4 NAD(P) transhydrogenase, alpha subunit K00324 - 1.6.1.2 0.000000000000000000000001073 118.0
YYD3_k127_888008_5 Protein involved in outer membrane biogenesis - - - 0.00000000002066 78.0
YYD3_k127_928323_0 Acyl-CoA oxidase K00232 - 1.3.3.6 3.318e-206 667.0
YYD3_k127_928323_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 456.0
YYD3_k127_928323_10 Ribose/Galactose Isomerase - - - 0.0000000000000000000000000000000000000000000000007648 200.0
YYD3_k127_928323_11 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000108 167.0
YYD3_k127_928323_12 Protein of unknown function, DUF - - - 0.00000000000000000000000000000000000000001075 159.0
YYD3_k127_928323_13 - - - - 0.000000000000000000000000000000002158 138.0
YYD3_k127_928323_14 Putative lumazine-binding - - - 0.000000000000000000000000000000004216 139.0
YYD3_k127_928323_15 translation initiation factor activity K06996 - - 0.0000000000000000000000000000001845 138.0
YYD3_k127_928323_16 acetyltransferase K06975 - - 0.00000000000004814 81.0
YYD3_k127_928323_17 PAS domain containing protein - - - 0.00002005 54.0
YYD3_k127_928323_18 ketosteroid isomerase - - - 0.00008123 52.0
YYD3_k127_928323_2 Putative zinc-binding metallo-peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 460.0
YYD3_k127_928323_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007854 432.0
YYD3_k127_928323_4 Multicopper oxidase K00368,K22348 - 1.16.3.3,1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002616 420.0
YYD3_k127_928323_5 mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007384 370.0
YYD3_k127_928323_6 Predicted membrane protein (DUF2238) K08984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006038 262.0
YYD3_k127_928323_7 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000278 284.0
YYD3_k127_928323_8 membrane - - - 0.000000000000000000000000000000000000000000000000000000001265 205.0
YYD3_k127_928323_9 CDGSH-type zinc finger. Function unknown. - - - 0.0000000000000000000000000000000000000000000000000004363 205.0
YYD3_k127_941048_0 - - - - 0.00000000000000000000000000000000000000000002021 167.0
YYD3_k127_941048_1 - - - - 0.000000000000000001415 98.0
YYD3_k127_941048_2 NHL repeat - - - 0.000000000003174 78.0
YYD3_k127_941048_3 - - - - 0.0000000003139 73.0
YYD3_k127_941048_4 Conserved TM helix - - - 0.000000006463 58.0
YYD3_k127_941048_5 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02005 - - 0.000294 53.0
YYD3_k127_961543_0 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000917 243.0
YYD3_k127_961543_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000008077 241.0
YYD3_k127_961543_2 Putative glycolipid-binding K09957 - - 0.00000000000000000000000000000000000000000001368 176.0
YYD3_k127_961543_3 Domain of unknown function (DUF4260) - - - 0.0000000000000000000000000000000000000003712 153.0
YYD3_k127_961543_4 -acetyltransferase - - - 0.000000000000000000000000000000000000004427 155.0
YYD3_k127_961543_5 - - - - 0.000000000000000000000000000000000009865 144.0
YYD3_k127_961543_7 acetyltransferase K22441 - 2.3.1.57 0.000000000000168 71.0
YYD3_k127_961543_8 Transcription factor zinc-finger - - - 0.0001169 54.0
YYD3_k127_961543_9 - - - - 0.0001412 49.0
YYD3_k127_961731_0 Bacterial regulatory protein, Fis family - - - 1.44e-217 686.0
YYD3_k127_961731_1 Chain length determinant protein K16554 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549 597.0
YYD3_k127_961731_2 AMP-binding enzyme C-terminal domain K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 575.0
YYD3_k127_961731_3 OST-HTH/LOTUS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 342.0
YYD3_k127_961731_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001518 265.0