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Overview

ID MAG04653
Name YYD3_bin.3
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Polarisedimenticolia
Order Polarisedimenticolales
Family DASRJG01
Genus
Species
Assembly information
Completeness (%) 60.62
Contamination (%) 1.7
GC content (%) 70.0
N50 (bp) 5,918
Genome size (bp) 2,447,445

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2190

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1007289_0 Glutamine amidotransferases class-II K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004037 571.0
YYD3_k127_1007289_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 511.0
YYD3_k127_1007289_2 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 394.0
YYD3_k127_1007289_3 Formyl transferase K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000004314 221.0
YYD3_k127_1007289_4 beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000064 216.0
YYD3_k127_1007289_5 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.00000000000000000000000000000000000000000000000001977 184.0
YYD3_k127_1007289_6 Belongs to the peptidase M16 family - - - 0.000000006253 60.0
YYD3_k127_1007289_7 Belongs to the UPF0758 family K03630 - - 0.0000007118 61.0
YYD3_k127_1041442_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 590.0
YYD3_k127_1041442_1 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001719 276.0
YYD3_k127_1041442_2 Modulates RecA activity K03565 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000002407 74.0
YYD3_k127_1045132_0 Belongs to the peptidase S1C family - - - 0.00001592 56.0
YYD3_k127_1045132_1 domain protein K20276 - - 0.0002339 55.0
YYD3_k127_1068296_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 2.114e-212 673.0
YYD3_k127_1068296_1 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 355.0
YYD3_k127_1068296_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 325.0
YYD3_k127_1068296_3 PFAM Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006369 295.0
YYD3_k127_1068296_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000005095 140.0
YYD3_k127_1068296_5 Transcriptional regulator, DeoR family K21601 - - 0.000002964 59.0
YYD3_k127_1088807_0 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001407 279.0
YYD3_k127_1088807_1 Putative zinc-finger K03088 - - 0.00000000000000000000000000000000004225 142.0
YYD3_k127_1088807_2 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000001416 138.0
YYD3_k127_1088807_3 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000494 133.0
YYD3_k127_1088807_4 Sulfurtransferase - - - 0.00000000000000000008614 91.0
YYD3_k127_1088807_5 Outer membrane efflux protein - - - 0.00000000000000359 81.0
YYD3_k127_1088807_6 AntiSigma factor - - - 0.0000000001172 68.0
YYD3_k127_1094350_0 Glycogen debranching enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001487 289.0
YYD3_k127_1094350_1 peptidyl-tyrosine sulfation - - - 0.0001648 53.0
YYD3_k127_1106821_0 Berberine and berberine like - - - 7.895e-217 684.0
YYD3_k127_1106821_1 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 437.0
YYD3_k127_1106821_2 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001932 277.0
YYD3_k127_1106821_3 - - - - 0.00000000000000000000000000000000000000000000005897 184.0
YYD3_k127_1106821_4 - - - - 0.0000007738 57.0
YYD3_k127_1135348_0 aconitate hydratase K01681 - 4.2.1.3 3.405e-304 946.0
YYD3_k127_1135348_1 Insulinase (Peptidase family M16) K07263 - - 1.586e-203 660.0
YYD3_k127_1139531_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005801 369.0
YYD3_k127_1139531_1 membrane organization K07277,K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007932 365.0
YYD3_k127_1139531_2 Methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000003622 242.0
YYD3_k127_1139531_3 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000003776 152.0
YYD3_k127_1139531_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03087 GO:0000988,GO:0000990,GO:0001666,GO:0002791,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009410,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032879,GO:0032880,GO:0036293,GO:0040007,GO:0042221,GO:0043175,GO:0043254,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051173,GO:0051223,GO:0051252,GO:0051254,GO:0060255,GO:0062012,GO:0065007,GO:0070063,GO:0070201,GO:0070482,GO:0071944,GO:0080090,GO:0090087,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.0000000000002271 77.0
YYD3_k127_1140981_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 358.0
YYD3_k127_1140981_1 PFAM cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000004264 278.0
YYD3_k127_1140981_2 TonB dependent receptor K02014 - - 0.0000000000000000000000000000004484 139.0
YYD3_k127_1140981_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0005626 51.0
YYD3_k127_1162654_0 PFAM von Willebrand factor type A K01337 - 3.4.21.50 0.00000000000000000000000000000000000000000000000000000000000000000005353 257.0
YYD3_k127_1162654_1 KR domain K00023,K00059 - 1.1.1.100,1.1.1.36 0.000000000000000000000000000000000000000000000000000000004284 207.0
YYD3_k127_1162654_2 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000006924 133.0
YYD3_k127_1162654_3 - - - - 0.0000000000000000000000003539 121.0
YYD3_k127_1162654_4 GMP synthase - Glutamine amidotransferase domain K01951 - 6.3.5.2 0.0000000000002745 82.0
YYD3_k127_1162654_5 transcriptional regulator - - - 0.000000000005464 76.0
YYD3_k127_118739_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000002079 206.0
YYD3_k127_118739_1 Rhomboid family - - - 0.00000000000000000000000000000000000000003675 161.0
YYD3_k127_118739_2 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000003772 166.0
YYD3_k127_118739_3 Cro/C1-type HTH DNA-binding domain K07729 - - 0.000008413 53.0
YYD3_k127_118739_4 DNA-binding transcriptional activator of the SARP family - - - 0.0007278 51.0
YYD3_k127_1205258_0 PemK-like, MazF-like toxin of type II toxin-antitoxin system - - - 0.0000000000000000000000000003551 117.0
YYD3_k127_1232261_0 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008638 487.0
YYD3_k127_1232261_1 COG3000 Sterol desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 348.0
YYD3_k127_1232261_2 Sigma-54 interaction domain - - - 0.0000000000001987 82.0
YYD3_k127_1263700_0 protein import - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 526.0
YYD3_k127_1263700_1 SMART protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000003832 227.0
YYD3_k127_1263700_2 40-residue YVTN family beta-propeller repeat protein - - - 0.00000000000000000000000000000000000000000000000002544 201.0
YYD3_k127_1263700_3 - - - - 0.000000000000005288 83.0
YYD3_k127_1263700_4 Iron-containing alcohol dehydrogenase K00096 - 1.1.1.261 0.000005968 55.0
YYD3_k127_127297_0 PFAM Cys Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 317.0
YYD3_k127_127297_1 spore germination - - - 0.00000000000000000000000000000001751 130.0
YYD3_k127_127297_2 Domain of unknown function (DUF4382) - - - 0.0001803 53.0
YYD3_k127_1272974_0 Domain of unknown function (DUF4347) - - - 0.000000000000000000000000000000000000000000000000002026 210.0
YYD3_k127_1272974_1 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.00000000000000000000000000000000000001347 149.0
YYD3_k127_1272974_2 cellulase activity - - - 0.0000000000000001094 96.0
YYD3_k127_1272974_3 alpha-L-arabinofuranosidase - - - 0.000000000006702 80.0
YYD3_k127_1295440_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000242 98.0
YYD3_k127_1295440_2 Vitamin K epoxide reductase family - - - 0.0000000000000297 85.0
YYD3_k127_1304226_0 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 432.0
YYD3_k127_1304226_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000488 172.0
YYD3_k127_1304226_2 acyltransferase K00655 - 2.3.1.51 0.00000000000000001181 93.0
YYD3_k127_1304226_3 pathogenesis - - - 0.00000000000001533 76.0
YYD3_k127_1304226_4 Protein of unknown function (DUF2846) - - - 0.00000000000339 78.0
YYD3_k127_1304226_5 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0007555 45.0
YYD3_k127_1323172_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 5.104e-206 656.0
YYD3_k127_1323172_1 Pirin K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004197 337.0
YYD3_k127_1323172_2 PFAM Cys Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000002998 246.0
YYD3_k127_1323172_3 Bacterial PH domain K08981 - - 0.0000000000000000000000000000000000000000000000000162 204.0
YYD3_k127_1323172_4 Bacterial PH domain - - - 0.0000000000000000000000000000000000000000002329 171.0
YYD3_k127_1323172_5 methylamine metabolic process K15977 - - 0.00000000000000000000000000000000000000002225 157.0
YYD3_k127_1323172_6 MarR family transcriptional K15973 - - 0.000000000000000000000000000000000000003758 151.0
YYD3_k127_1360467_0 Elongation factor SelB, winged helix K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 446.0
YYD3_k127_1360467_1 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000007215 185.0
YYD3_k127_1360467_2 Neisseria PilC beta-propeller domain K02674 - - 0.00000000000000000000000000000000000000000721 160.0
YYD3_k127_1360467_3 histidine kinase A domain protein - - - 0.0000000000004212 74.0
YYD3_k127_1360467_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03116 - - 0.0000000002999 63.0
YYD3_k127_1365383_0 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004144 466.0
YYD3_k127_1365383_1 NAD(P)H-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 369.0
YYD3_k127_1365383_2 methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000003324 214.0
YYD3_k127_1365383_3 DoxX-like family - - - 0.00000000000000000000000000000000000000001363 163.0
YYD3_k127_1365383_4 - - - - 0.00000000000000000000000000000003228 144.0
YYD3_k127_1405654_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 3.58e-243 768.0
YYD3_k127_1405654_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 369.0
YYD3_k127_1405654_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000006646 262.0
YYD3_k127_1405654_3 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000001197 145.0
YYD3_k127_1405654_4 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000006499 96.0
YYD3_k127_1405654_5 Chorismate mutase type II K03856 - 2.5.1.54 0.00000000008687 68.0
YYD3_k127_1425892_0 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000005147 219.0
YYD3_k127_1425892_1 - - - - 0.000000000000002874 88.0
YYD3_k127_1425892_2 fibronectin type III domain protein - - - 0.00000000004878 75.0
YYD3_k127_1425892_3 Domain of unknown function (DUF4082) - - - 0.0000002165 63.0
YYD3_k127_1425892_4 - - - - 0.0007961 44.0
YYD3_k127_1437965_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000001636 237.0
YYD3_k127_1437965_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000007211 127.0
YYD3_k127_1437965_2 peptidyl-tyrosine sulfation - - - 0.00000000000000006177 87.0
YYD3_k127_1452162_0 Thrombospondin type 3 repeat - - - 0.000000000000657 82.0
YYD3_k127_1452162_1 Pkd domain containing protein - - - 0.00000000000604 79.0
YYD3_k127_1473597_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 546.0
YYD3_k127_1473597_1 PFAM Glycosyl transferase family 2 K00786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 479.0
YYD3_k127_1473597_2 YHS domain - - - 0.00000000000000000000000000000000000000000000001583 175.0
YYD3_k127_1473597_3 - - - - 0.0000000000000000000000000000000000000000000002414 185.0
YYD3_k127_1473597_4 PFAM GGDEF domain containing protein - - - 0.000000000000000000000007629 118.0
YYD3_k127_1473597_5 deoxyhypusine monooxygenase activity - - - 0.00000000000000000005626 106.0
YYD3_k127_1473597_6 Tetratricopeptide repeat - - - 0.0000000000000000005488 101.0
YYD3_k127_1473597_7 - - - - 0.000002359 57.0
YYD3_k127_1473597_8 Tetratricopeptide repeat - - - 0.00001242 59.0
YYD3_k127_1479645_0 arylsulfatase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004241 269.0
YYD3_k127_1485535_0 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000001698 242.0
YYD3_k127_1485535_1 Elongation factor SelB, winged helix K03833 - - 0.0000000000000000000001198 108.0
YYD3_k127_1485535_2 protein secretion K03116 - - 0.000000000003932 70.0
YYD3_k127_1485535_3 Iron-regulated protein - - - 0.000004268 59.0
YYD3_k127_1496044_0 UDP-glucose 4-epimerase activity K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006695 410.0
YYD3_k127_1496044_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 386.0
YYD3_k127_1496044_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 313.0
YYD3_k127_1496044_3 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000001798 175.0
YYD3_k127_1496044_4 Peptidase family M50 K11749 - - 0.00000000000000000000000000005287 133.0
YYD3_k127_1496044_5 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000009749 74.0
YYD3_k127_1507514_0 PFAM glycosyl transferase family 39 - - - 0.00000000000000000000000000000000000000000000000000001608 215.0
YYD3_k127_1507514_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000004586 155.0
YYD3_k127_1507514_2 - - - - 0.0000000000000000000000000000004017 139.0
YYD3_k127_1514188_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 312.0
YYD3_k127_1514188_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000004394 188.0
YYD3_k127_1514188_2 Iron-storage protein K02217 - 1.16.3.2 0.000000000000000000000001546 119.0
YYD3_k127_1514188_3 regulator, PATAN and FRGAF domain-containing - - - 0.000124 51.0
YYD3_k127_1525081_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535,K13599 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000005723 263.0
YYD3_k127_1525081_1 histidine kinase HAMP region domain protein K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000006221 229.0
YYD3_k127_1525081_2 Tetratricopeptide repeat - - - 0.000000003651 59.0
YYD3_k127_1533322_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 555.0
YYD3_k127_1533322_1 Fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 357.0
YYD3_k127_1533322_2 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 314.0
YYD3_k127_1533322_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000001247 186.0
YYD3_k127_1533322_4 PFAM Bacterial regulatory protein, Fis family - - - 0.000003269 57.0
YYD3_k127_1537724_0 Cytochrome bd-type quinol oxidase subunit 1 K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 586.0
YYD3_k127_1537724_1 COG1294 Cytochrome bd-type quinol oxidase subunit 2 K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003807 396.0
YYD3_k127_1537724_2 Sodium alanine symporter K03310 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 346.0
YYD3_k127_1537724_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000001325 200.0
YYD3_k127_1537724_4 ABC transporter substrate-binding protein K02040 - - 0.0000000002421 60.0
YYD3_k127_1537724_5 - - - - 0.000000006555 66.0
YYD3_k127_1537724_6 antisigma factor binding K04749 - - 0.00001131 57.0
YYD3_k127_1556475_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 6.504e-242 762.0
YYD3_k127_1556475_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000374 401.0
YYD3_k127_1556475_2 Fe-S cluster K03616 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 298.0
YYD3_k127_1556475_3 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007614 269.0
YYD3_k127_1556475_4 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K03737 - 1.2.7.1 0.000000000000001796 89.0
YYD3_k127_1556475_5 - - - - 0.00004562 54.0
YYD3_k127_1590010_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000006828 215.0
YYD3_k127_1590010_1 TspO/MBR family K05770 - - 0.00000000000000000000000000000000000000008405 166.0
YYD3_k127_1590010_2 Amidohydrolase family - - - 0.000000000003076 72.0
YYD3_k127_1590010_3 BlaR1 peptidase M56 - - - 0.0000000002575 71.0
YYD3_k127_1590010_4 EamA-like transporter family - - - 0.00000001146 64.0
YYD3_k127_1590267_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 4.355e-290 906.0
YYD3_k127_1590267_1 It is involved in the biological process described with tricarboxylic acid cycle K01647 GO:0003674,GO:0003824,GO:0004108,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0006082,GO:0006084,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0014823,GO:0015980,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0036440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046912,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 539.0
YYD3_k127_1590267_2 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000001631 207.0
YYD3_k127_1595936_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007954 265.0
YYD3_k127_1595936_1 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000000000000000000000000000001158 205.0
YYD3_k127_1595936_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000003476 185.0
YYD3_k127_1595936_3 Cupin domain - - - 0.00000000000000000000000000000004053 128.0
YYD3_k127_1595936_5 - - - - 0.0000000000000000004214 100.0
YYD3_k127_160836_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000005927 118.0
YYD3_k127_160836_1 SCO1/SenC - - - 0.0000000000000001635 93.0
YYD3_k127_160836_2 DNA-sulfur modification-associated - - - 0.000000139 63.0
YYD3_k127_1611554_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000002328 142.0
YYD3_k127_1611554_1 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.0000000000000000000000000000236 123.0
YYD3_k127_1611554_2 phosphorelay signal transduction system - - - 0.0000000000000001075 93.0
YYD3_k127_1625759_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 5.241e-231 724.0
YYD3_k127_1625759_1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008707 524.0
YYD3_k127_1657092_0 PFAM Type II secretion system protein E K02652 - - 2.246e-225 710.0
YYD3_k127_1657092_1 Type ii and iii secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 328.0
YYD3_k127_1657092_2 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000123 278.0
YYD3_k127_1657092_3 RNA polymerase sigma factor K03088 - - 0.0000000000000000000001208 103.0
YYD3_k127_1657092_4 Pilus assembly protein K02662 - - 0.000000000000001254 89.0
YYD3_k127_1657092_5 Pilus assembly protein K02662 - - 0.00001052 58.0
YYD3_k127_1657092_6 - - - - 0.0009203 51.0
YYD3_k127_1676415_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 575.0
YYD3_k127_1676415_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 452.0
YYD3_k127_1676415_2 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000568 405.0
YYD3_k127_1676415_3 Involved in zinc efflux across the cytoplasmic membrane, thus reducing zinc accumulation in the cytoplasm and rendering bacteria more resistant to zinc. It may contribute to zinc homeostasis at low concentrations of zinc K16264 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000003666 254.0
YYD3_k127_1676415_4 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000000000002247 201.0
YYD3_k127_16804_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 389.0
YYD3_k127_16804_1 TIGRFAM phenazine biosynthesis protein PhzF family K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000002531 264.0
YYD3_k127_16804_2 PFAM DSBA oxidoreductase - - - 0.000000000000000000000000000000000000002783 151.0
YYD3_k127_16804_3 Membrane - - - 0.000000000000000000000000000007004 124.0
YYD3_k127_16804_4 heme oxygenase (decyclizing) activity - - - 0.00000000000000000000000001943 115.0
YYD3_k127_16804_5 PFAM Calcium calmodulin dependent protein kinase II association-domain protein - - - 0.00000000000000000004704 102.0
YYD3_k127_1682116_0 Peptidase S46 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 605.0
YYD3_k127_1682116_1 FAD linked oxidase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 371.0
YYD3_k127_1682116_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 313.0
YYD3_k127_1682116_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 297.0
YYD3_k127_1682116_4 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding K13639 - - 0.000000000000000000000000000000000000000000000000000000000000000000002397 238.0
YYD3_k127_1682116_5 nuclease activity K18828 - - 0.00000000000000002695 89.0
YYD3_k127_1682116_6 - - - - 0.0006148 46.0
YYD3_k127_169798_0 ggdef domain - - - 0.00000000000000000000000000000000000000000002741 177.0
YYD3_k127_169798_1 ggdef domain - - - 0.0000000000000000000000000000000000000000006944 181.0
YYD3_k127_1706494_0 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 387.0
YYD3_k127_1706494_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000008409 112.0
YYD3_k127_1706494_2 cellulose binding - - - 0.000000000005739 78.0
YYD3_k127_1738730_0 Cellulose synthase operon protein C C-terminus (BCSC_C) K20543 - - 0.0000006759 60.0
YYD3_k127_1738730_1 PHB depolymerase family esterase - - - 0.00003937 55.0
YYD3_k127_1740831_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 387.0
YYD3_k127_1740831_1 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 326.0
YYD3_k127_1740831_2 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000003898 192.0
YYD3_k127_1740831_3 Vitamin K epoxide reductase family - - - 0.0000000000000000000000000004191 130.0
YYD3_k127_1740831_5 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000008092 112.0
YYD3_k127_1740831_6 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000266 110.0
YYD3_k127_1740831_7 lipolytic protein G-D-S-L family - - - 0.00000000000000000001059 108.0
YYD3_k127_1740831_8 PFAM thioesterase superfamily - - - 0.00000000006249 70.0
YYD3_k127_1740831_9 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K12734 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564 5.2.1.8 0.000001519 59.0
YYD3_k127_1756960_0 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 390.0
YYD3_k127_1756960_1 geranylgeranyl reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 307.0
YYD3_k127_1756960_2 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000004968 177.0
YYD3_k127_1756960_3 Polymorphic membrane protein Chlamydia - - - 0.000000000000000000000000000000000002937 156.0
YYD3_k127_1766912_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 469.0
YYD3_k127_1766912_1 membrane K08981 - - 0.0000000000000000000000000000000000000000000000000000000000001425 232.0
YYD3_k127_1766912_2 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000008373 230.0
YYD3_k127_1766912_3 Bacterial PH domain K09167 - - 0.0000000009504 64.0
YYD3_k127_1766912_4 alpha beta K06889 - - 0.00000003335 64.0
YYD3_k127_1767494_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 3.519e-201 669.0
YYD3_k127_1767494_1 to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008228 419.0
YYD3_k127_1767494_10 Histidine kinase - - - 0.0000000000000000000000000000000000000000002767 175.0
YYD3_k127_1767494_11 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000002271 156.0
YYD3_k127_1767494_12 transcriptional regulator, SARP family - - - 0.000004751 59.0
YYD3_k127_1767494_13 - - - - 0.0009216 50.0
YYD3_k127_1767494_2 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 409.0
YYD3_k127_1767494_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 415.0
YYD3_k127_1767494_4 TIGRFAM stage V sporulation protein D K08384 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 403.0
YYD3_k127_1767494_5 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 379.0
YYD3_k127_1767494_6 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 301.0
YYD3_k127_1767494_7 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002559 277.0
YYD3_k127_1767494_8 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000001694 264.0
YYD3_k127_1767494_9 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000001215 259.0
YYD3_k127_1775066_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001366 297.0
YYD3_k127_1775066_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000006529 262.0
YYD3_k127_1775066_2 Tetratricopeptide repeat - - - 0.000000000000006153 83.0
YYD3_k127_1775066_3 - - - - 0.00001302 52.0
YYD3_k127_1775066_4 Lysin motif - - - 0.0004688 51.0
YYD3_k127_1788489_0 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 526.0
YYD3_k127_1788489_1 PFAM Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005223 515.0
YYD3_k127_1788489_2 PFAM lipopolysaccharide biosynthesis protein K08253 - 2.7.10.2 0.0000000000000000000000000000000000001309 158.0
YYD3_k127_1788489_3 G-rich domain on putative tyrosine kinase - - - 0.0000000000000000000000000000000000009211 156.0
YYD3_k127_1788489_4 transposition, DNA-mediated K02342 - 2.7.7.7 0.0000000000005583 79.0
YYD3_k127_1796369_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008065 293.0
YYD3_k127_1796369_1 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001591 281.0
YYD3_k127_1796369_2 Carboxypeptidase regulatory-like domain - - - 0.00000005757 64.0
YYD3_k127_1796369_3 Carboxypeptidase regulatory-like domain - - - 0.000009918 57.0
YYD3_k127_1801383_0 Subtilase family - - - 0.00000000000000000000000000000000000000007164 170.0
YYD3_k127_1801383_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000275 139.0
YYD3_k127_1801383_2 Proprotein convertase P-domain - - - 0.00000000008505 75.0
YYD3_k127_1801383_3 family 18 - - - 0.0004963 53.0
YYD3_k127_1802451_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001933 263.0
YYD3_k127_1802451_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000004607 252.0
YYD3_k127_1802451_2 - - - - 0.0006441 47.0
YYD3_k127_1828004_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 287.0
YYD3_k127_1828004_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000000000000000000556 241.0
YYD3_k127_1828004_2 guanyl-nucleotide exchange factor activity - - - 0.000000000000000000000000000000000000000006311 179.0
YYD3_k127_1828004_3 BTB And C-terminal Kelch K10456 GO:0000151,GO:0001701,GO:0001887,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005737,GO:0005783,GO:0005815,GO:0005829,GO:0005856,GO:0005884,GO:0005911,GO:0005912,GO:0005913,GO:0005924,GO:0005925,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006979,GO:0007275,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010604,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015629,GO:0015630,GO:0016043,GO:0016567,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019941,GO:0022607,GO:0030054,GO:0030055,GO:0030162,GO:0030163,GO:0030496,GO:0030856,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031461,GO:0031463,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034097,GO:0035902,GO:0036211,GO:0042176,GO:0042221,GO:0042802,GO:0042803,GO:0042994,GO:0043009,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043433,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0045595,GO:0045604,GO:0045682,GO:0045732,GO:0045862,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051171,GO:0051173,GO:0051179,GO:0051220,GO:0051235,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051259,GO:0051603,GO:0051716,GO:0051865,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070161,GO:0070646,GO:0070647,GO:0070670,GO:0070887,GO:0071310,GO:0071345,GO:0071353,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0097066,GO:0097718,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141 - 0.00000004962 67.0
YYD3_k127_1849922_0 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005168 445.0
YYD3_k127_1849922_1 PFAM ATP-binding region ATPase domain protein K07709 - 2.7.13.3 0.00000000000000000000000000000000000000009845 173.0
YYD3_k127_1849922_2 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000002595 145.0
YYD3_k127_1849922_3 Tetratricopeptide repeat - - - 0.0004369 53.0
YYD3_k127_1871700_0 metal cluster binding K19302 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000005564 236.0
YYD3_k127_1871700_1 Sulfatase - - - 0.000000000000000000000000000000000000000000004239 181.0
YYD3_k127_1871700_2 PIN domain - - - 0.00000000000000000000000000000000000000004041 160.0
YYD3_k127_1871700_3 PFAM PIN domain - - - 0.000000000000000000000000001354 119.0
YYD3_k127_1871700_4 SpoVT / AbrB like domain - - - 0.0000000000000000000003584 100.0
YYD3_k127_1871700_5 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000000009713 76.0
YYD3_k127_1871700_6 D-xylose 1-dehydrogenase (NADP+) activity - - - 0.0001392 51.0
YYD3_k127_1893867_0 polysaccharide export protein K01991 - - 0.00000000000000000000000000000000000013 149.0
YYD3_k127_1893867_1 protein involved in exopolysaccharide biosynthesis - - - 0.000000000931 71.0
YYD3_k127_1898839_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 1.878e-269 854.0
YYD3_k127_1898839_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002005 280.0
YYD3_k127_1898839_2 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002066 310.0
YYD3_k127_1898839_3 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000002196 244.0
YYD3_k127_1898839_5 cellulose binding K01179,K01218 GO:0003674,GO:0005488,GO:0005515,GO:0042802 3.2.1.4,3.2.1.78 0.0000000007603 74.0
YYD3_k127_1898839_6 Protein of unknown function (DUF2914) - - - 0.00000687 60.0
YYD3_k127_1898839_7 - - - - 0.0001084 55.0
YYD3_k127_1898839_8 COG2931 RTX toxins and related Ca2 -binding proteins K01406,K07004 - 3.4.24.40 0.0009323 53.0
YYD3_k127_190267_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005134 547.0
YYD3_k127_190267_1 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 460.0
YYD3_k127_190267_2 valyl-tRNA aminoacylation K01873 GO:0000166,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061475,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000004932 51.0
YYD3_k127_1904084_0 UbiA prenyltransferase family K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000784 282.0
YYD3_k127_1904084_1 Amidohydrolase family K20810 - 3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000001743 231.0
YYD3_k127_1904084_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000002941 190.0
YYD3_k127_1904084_3 PFAM Uncharacterised protein family (UPF0153) - - - 0.000000000000000000000000000006561 126.0
YYD3_k127_1908026_0 DNA RNA helicase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 423.0
YYD3_k127_1908026_1 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006263 383.0
YYD3_k127_1908026_2 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001802 280.0
YYD3_k127_1908026_3 PFAM molybdopterin dehydrogenase, FAD-binding K11178 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000011 267.0
YYD3_k127_1908026_4 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000005499 248.0
YYD3_k127_1908026_5 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000001609 182.0
YYD3_k127_1908026_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000003124 119.0
YYD3_k127_1908026_7 - - - - 0.00000000000000007204 94.0
YYD3_k127_1908026_8 Putative zinc-finger - - - 0.00005446 55.0
YYD3_k127_1946658_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 309.0
YYD3_k127_1946658_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000842 120.0
YYD3_k127_1946658_2 transport system involved in gliding motility, auxiliary K01992 - - 0.00000000000000867 82.0
YYD3_k127_1946658_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000006121 64.0
YYD3_k127_1946658_4 Protein of unknown function (DUF721) - - - 0.0001256 53.0
YYD3_k127_1959398_0 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000009403 207.0
YYD3_k127_1959398_1 transglycosylase associated protein - - - 0.00000000000000000003153 93.0
YYD3_k127_1959398_2 OmpW family K07275 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000098 55.0
YYD3_k127_1980489_0 COG0226 ABC-type phosphate transport system periplasmic K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006125 448.0
YYD3_k127_1980489_1 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006289 362.0
YYD3_k127_1980489_2 Binding-protein-dependent transport system inner membrane component K02037 - - 0.00000000000000000001359 108.0
YYD3_k127_1980489_3 - - - - 0.0000000000000000008412 99.0
YYD3_k127_1981479_0 Protein of unknown function (DUF2867) - - - 4.897e-199 632.0
YYD3_k127_1981479_1 Alcohol dehydrogenase GroES-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 419.0
YYD3_k127_1981479_10 Histidine kinase-like ATPase domain - - - 0.000000000004333 79.0
YYD3_k127_1981479_11 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.00000000002398 64.0
YYD3_k127_1981479_12 TIGRFAM VWFA-related Acidobacterial domain - - - 0.0000000007947 72.0
YYD3_k127_1981479_2 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 407.0
YYD3_k127_1981479_3 DeoC/LacD family aldolase K08321 - 2.3.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 364.0
YYD3_k127_1981479_4 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000001513 176.0
YYD3_k127_1981479_5 SNARE associated Golgi protein - - - 0.000000000000000000000000000000001376 150.0
YYD3_k127_1981479_8 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0000000000000000009308 101.0
YYD3_k127_1981479_9 - - - - 0.00000000000001449 79.0
YYD3_k127_2012480_0 Glutamine amidotransferase domain K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 497.0
YYD3_k127_2012480_1 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002392 269.0
YYD3_k127_2012480_10 Oligosaccharide biosynthesis protein Alg14 like - - - 0.0000000006833 72.0
YYD3_k127_2012480_11 Glycosyltransferase family 28 C-terminal domain - - - 0.00000007122 64.0
YYD3_k127_2012480_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001932 268.0
YYD3_k127_2012480_3 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000003137 228.0
YYD3_k127_2012480_4 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000003516 183.0
YYD3_k127_2012480_5 transferase activity, transferring glycosyl groups K13668 GO:0000009,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0033164,GO:0040007,GO:0043750,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.4.1.346 0.0000000000000000000000000000000000000000000001031 183.0
YYD3_k127_2012480_6 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000003556 179.0
YYD3_k127_2012480_7 transferase activity, transferring glycosyl groups K13668 GO:0000009,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0033164,GO:0040007,GO:0043750,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.4.1.346 0.000000000000000000000000000000000000003964 160.0
YYD3_k127_2012480_8 DegT/DnrJ/EryC1/StrS aminotransferase family K13010,K19430 - 2.6.1.102 0.0000000000000001864 82.0
YYD3_k127_2012480_9 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.000000000004788 72.0
YYD3_k127_2035778_0 AcrB/AcrD/AcrF family K15726 - - 0.0 1291.0
YYD3_k127_2035778_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 344.0
YYD3_k127_2042769_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000004052 239.0
YYD3_k127_2042769_1 PSP1 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000001445 223.0
YYD3_k127_2042769_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070930,GO:0071704,GO:1901564 - 0.000000000000000000000000000000000000000000000000151 181.0
YYD3_k127_2064316_0 2 iron, 2 sulfur cluster binding K02823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 357.0
YYD3_k127_2064316_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005146 321.0
YYD3_k127_2064316_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 337.0
YYD3_k127_2064316_3 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 308.0
YYD3_k127_2064316_4 coenzyme F420 hydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006482 285.0
YYD3_k127_2064316_5 cyclic nucleotide binding K10914 - - 0.00000000000000000000000000000000000000003268 171.0
YYD3_k127_2064316_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.0000000000000000000000000000000007867 139.0
YYD3_k127_2064316_7 Nickel-dependent hydrogenase K00436 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 0.000000000001221 72.0
YYD3_k127_2067197_0 histidine kinase A domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005469 349.0
YYD3_k127_2067197_1 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000001484 218.0
YYD3_k127_2067197_2 phosphomannomutase K01840 GO:0003674,GO:0003824,GO:0004615,GO:0005975,GO:0008150,GO:0008152,GO:0016853,GO:0016866,GO:0016868,GO:0044238,GO:0071704 5.4.2.8 0.0000000000000000000000000000000000000000000000000000001289 196.0
YYD3_k127_2067197_3 Phospholipase D. Active site motifs. K06132 - - 0.000000000000000000000000000000000000000000000000007798 201.0
YYD3_k127_2067197_4 Predicted integral membrane protein (DUF2270) - - - 0.00000000000000000000000000000000000000000001515 180.0
YYD3_k127_2080439_0 Carbamoyltransferase C-terminus K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 306.0
YYD3_k127_2080439_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000001346 114.0
YYD3_k127_2080439_2 - - - - 0.0000000000001241 71.0
YYD3_k127_2080439_3 - - - - 0.000007176 55.0
YYD3_k127_2084498_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.465e-256 809.0
YYD3_k127_2084498_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000007688 226.0
YYD3_k127_2084498_2 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000000000000000000000000000000009971 165.0
YYD3_k127_2084498_3 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000302 145.0
YYD3_k127_2084498_4 SAF K16845 - 4.4.1.24 0.000000000000000144 81.0
YYD3_k127_2084498_5 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000002822 76.0
YYD3_k127_2086770_0 COG0577 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004957 389.0
YYD3_k127_2086770_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002507 371.0
YYD3_k127_2086770_2 prohibitin homologues K07192 - - 0.000000000000000000000000000000000000000000000000000000001735 213.0
YYD3_k127_2086770_3 oxidation-reduction process - - - 0.000000000000000000000000000000000000000000000001247 181.0
YYD3_k127_2086770_4 PFAM ABC transporter K02003 - - 0.000000000000000000000000000000000006214 138.0
YYD3_k127_2086770_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000001346 126.0
YYD3_k127_2086770_6 SpoVT / AbrB like domain - - - 0.000000000000148 73.0
YYD3_k127_2086770_7 Prokaryotic N-terminal methylation motif K02456 - - 0.0000003527 63.0
YYD3_k127_2096703_0 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000003394 87.0
YYD3_k127_2101705_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.693e-227 715.0
YYD3_k127_2101705_1 AAA domain - - - 0.000000000000000000000000000000000000000000000001755 182.0
YYD3_k127_2101705_2 Aspartyl protease - - - 0.00000000000000000000000000007553 132.0
YYD3_k127_211062_0 PFAM ATPase associated with various cellular activities, AAA_5 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 315.0
YYD3_k127_211062_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000001235 121.0
YYD3_k127_211062_2 VWA domain containing CoxE-like protein K07161 - - 0.000000009949 66.0
YYD3_k127_211062_3 COG0457 FOG TPR repeat - - - 0.000007748 59.0
YYD3_k127_2115193_0 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 364.0
YYD3_k127_2115193_1 Superfamily II DNA RNA helicases, SNF2 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 325.0
YYD3_k127_2115193_2 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000006482 245.0
YYD3_k127_2115193_3 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000000000000005582 229.0
YYD3_k127_2115193_4 ADP-glyceromanno-heptose 6-epimerase activity K00091 - 1.1.1.219 0.00000000000000000000000000000000008327 146.0
YYD3_k127_2115193_5 enzyme binding K00567,K07443 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0019899,GO:0097159,GO:1901363 2.1.1.63 0.000000000000000000006437 97.0
YYD3_k127_2120633_0 TIGRFAM argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007982 340.0
YYD3_k127_2120633_1 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 307.0
YYD3_k127_2120633_2 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000002695 263.0
YYD3_k127_2120633_3 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000006313 261.0
YYD3_k127_2120633_4 Semialdehyde dehydrogenase, NAD binding domain K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000102 192.0
YYD3_k127_2125910_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008772 557.0
YYD3_k127_2125910_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 GO:0003674,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090304,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 355.0
YYD3_k127_2125910_2 Trypsin-like peptidase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001132 271.0
YYD3_k127_2125910_3 Protein of unknown function (DUF423) - - - 0.00000000000000000000000000000000000000000001274 165.0
YYD3_k127_2125910_4 Subtilase family - - - 0.0000000000000000000000000000006541 143.0
YYD3_k127_2125910_5 Peptidase family M28 - - - 0.000000000000000000000000000001135 142.0
YYD3_k127_2125910_6 Metallo-beta-lactamase superfamily - - - 0.00000000000000000004174 92.0
YYD3_k127_2125910_7 Crp-like helix-turn-helix domain K21563 - - 0.0000000000000000001785 97.0
YYD3_k127_2125910_8 Belongs to the glycosyl hydrolase 43 family K20276 - - 0.00000003355 68.0
YYD3_k127_2125910_9 SMART Transport-associated and nodulation region - - - 0.0000001227 62.0
YYD3_k127_2128981_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 449.0
YYD3_k127_2128981_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 452.0
YYD3_k127_2128981_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 409.0
YYD3_k127_2128981_3 Peptidase, M23 K21471 - - 0.0000000000000000000000003236 124.0
YYD3_k127_2128981_4 tail specific protease K03797 - 3.4.21.102 0.00000000000000007253 93.0
YYD3_k127_2132605_0 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001713 284.0
YYD3_k127_2132605_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000001504 206.0
YYD3_k127_2132605_2 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.00000000000000000000000000000000000006205 148.0
YYD3_k127_2132605_3 Kdo2-lipid A biosynthetic process K02517,K22311 - 2.3.1.241,2.3.1.265 0.00000000001004 78.0
YYD3_k127_2132605_4 3-hydroxylacyl-(Acyl carrier protein) dehydratase - - - 0.0001107 55.0
YYD3_k127_2133423_0 PUA-like domain K00958 - 2.7.7.4 1.366e-251 795.0
YYD3_k127_2133423_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 558.0
YYD3_k127_2133423_2 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000003177 209.0
YYD3_k127_2133423_3 Protein conserved in bacteria K07011 - - 0.0000000000000000000000000000000000000000000001122 177.0
YYD3_k127_2133423_4 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000001602 120.0
YYD3_k127_2133423_5 Kazal-type serine protease inhibitor domain - - - 0.0003497 47.0
YYD3_k127_2182617_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1166.0
YYD3_k127_2182617_1 nitrite transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 486.0
YYD3_k127_2182617_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001399 290.0
YYD3_k127_2182617_3 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000009226 154.0
YYD3_k127_2182617_4 Outer membrane efflux protein - - - 0.000000000000006115 87.0
YYD3_k127_2195593_0 PFAM membrane bound O-acyl transferase MBOAT family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 602.0
YYD3_k127_2195593_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002027 289.0
YYD3_k127_2195593_2 Universal stress protein family - - - 0.00000000000000000000000000003056 126.0
YYD3_k127_2195593_3 isomerase activity - - - 0.00000000001794 77.0
YYD3_k127_2195593_4 Alpha beta hydrolase - - - 0.000124 51.0
YYD3_k127_2195593_5 Domain of unknown function (DUF4118) - - - 0.0006926 49.0
YYD3_k127_2202228_0 Outer membrane protein transport protein (OMPP1/FadL/TodX) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009201 286.0
YYD3_k127_2202228_1 YbaK proline--tRNA ligase associated domain protein K19055 GO:0002161,GO:0002196,GO:0003674,GO:0003824,GO:0006139,GO:0006399,GO:0006417,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016070,GO:0016787,GO:0016788,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0045727,GO:0045903,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0052689,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:2000112 - 0.00000000000000000000000000000000000000007562 168.0
YYD3_k127_2202228_2 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.00000000000000000000000000000000004273 145.0
YYD3_k127_2228019_0 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0 1310.0
YYD3_k127_2228019_1 Lactonase, 7-bladed beta-propeller - - - 0.00002003 53.0
YYD3_k127_2242856_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 339.0
YYD3_k127_2242856_1 protein phosphatase 2C domain protein K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000002613 218.0
YYD3_k127_2242856_2 - - - - 0.000000000000000000000000000000000000007606 161.0
YYD3_k127_2242856_3 metallopeptidase activity - - - 0.0000000000000000000000000000000000006571 152.0
YYD3_k127_2242856_4 Helix-turn-helix domain - - - 0.000000000000002454 85.0
YYD3_k127_2242856_5 Tetratricopeptide repeat - - - 0.0000000000003722 81.0
YYD3_k127_2242856_6 - - - - 0.0000000000009053 79.0
YYD3_k127_2242856_7 Cna B domain protein - - - 0.00000206 61.0
YYD3_k127_2243118_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006389 603.0
YYD3_k127_2243118_1 EXOIII K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000004653 248.0
YYD3_k127_2243118_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000001235 158.0
YYD3_k127_2261357_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 3.91e-251 788.0
YYD3_k127_2261357_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006934 359.0
YYD3_k127_2261357_2 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000008556 130.0
YYD3_k127_2261357_3 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000001758 76.0
YYD3_k127_2283687_0 COGs COG0318 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 473.0
YYD3_k127_2283687_1 Oxidoreductase family, C-terminal alpha/beta domain K13016 - 1.1.1.335 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 322.0
YYD3_k127_2283687_2 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000001164 237.0
YYD3_k127_2283687_3 PFAM polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000003184 212.0
YYD3_k127_2283687_4 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000004927 183.0
YYD3_k127_2283687_5 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000007308 176.0
YYD3_k127_2283687_6 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000001111 183.0
YYD3_k127_2283687_7 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000002748 151.0
YYD3_k127_2283687_8 polyketide synthase K21792 - - 0.0000000000000000005382 100.0
YYD3_k127_2302840_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 525.0
YYD3_k127_2302840_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000009551 154.0
YYD3_k127_2306161_0 Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair K03580 GO:0000166,GO:0001000,GO:0003674,GO:0003676,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043175,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000002612 190.0
YYD3_k127_2306161_1 3-oxo-5-alpha-steroid 4-dehydrogenase K12343 - 1.3.1.22 0.00000000000000000000000000002192 117.0
YYD3_k127_2306161_2 RNA recognition motif - - - 0.00000000000000000000000004447 113.0
YYD3_k127_2352968_0 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000008266 234.0
YYD3_k127_2352968_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000003902 156.0
YYD3_k127_2352968_2 PFAM Activator of Hsp90 ATPase 1 family protein - - - 0.00000000000000000000000000000000004057 140.0
YYD3_k127_2352968_3 Transmembrane secretion effector K08225 - - 0.0000000000000000000000000000002184 127.0
YYD3_k127_2352968_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000282 119.0
YYD3_k127_2352968_5 Protein of unknown function (DUF1579) - - - 0.000000000000000000000000001837 118.0
YYD3_k127_2352968_6 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000002958 98.0
YYD3_k127_2377765_0 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009073 336.0
YYD3_k127_2377765_1 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003941 324.0
YYD3_k127_2377765_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000004226 158.0
YYD3_k127_2377765_3 Belongs to the UPF0145 family - - - 0.000000000000000000000000000000000123 140.0
YYD3_k127_2377765_4 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000004067 136.0
YYD3_k127_2414942_0 protein related to plant photosystem II stability assembly factor - - - 1.19e-221 690.0
YYD3_k127_2414942_1 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 496.0
YYD3_k127_2414942_10 histone H2A K63-linked ubiquitination K03466 - - 0.000000000427 70.0
YYD3_k127_2414942_11 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.00007568 56.0
YYD3_k127_2414942_2 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 363.0
YYD3_k127_2414942_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 372.0
YYD3_k127_2414942_4 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004373 322.0
YYD3_k127_2414942_5 LVIVD repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009439 272.0
YYD3_k127_2414942_6 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000003843 234.0
YYD3_k127_2414942_7 mannose metabolic process - - - 0.0000000000000000000000000000000000000000000000000000001095 224.0
YYD3_k127_2414942_8 Serine Threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000002911 206.0
YYD3_k127_2414942_9 Mo-molybdopterin cofactor metabolic process K03636,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000001239 141.0
YYD3_k127_2461670_0 Psort location Cytoplasmic, score 8.87 K09384 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005531 613.0
YYD3_k127_2461670_1 ORF6N domain - - - 0.00000000000000000000000000000000000000000000000000006725 193.0
YYD3_k127_2468482_0 Flavin containing amine oxidoreductase - - - 8.371e-201 661.0
YYD3_k127_2468482_1 epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 346.0
YYD3_k127_2468482_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000001979 132.0
YYD3_k127_2468482_3 Sulfatase - - - 0.0000000000000000000000003172 123.0
YYD3_k127_2468482_4 Protein of unknown function (DUF2723) - - - 0.000000000000000000000001199 119.0
YYD3_k127_2468482_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000004502 108.0
YYD3_k127_2468482_6 Polysaccharide biosynthesis protein - - - 0.0000000000000002379 93.0
YYD3_k127_2468482_7 Hypothetical methyltransferase - - - 0.0000000000001806 81.0
YYD3_k127_2468482_8 methyltransferase - - - 0.00000000000129 77.0
YYD3_k127_2468482_9 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000009539 65.0
YYD3_k127_249029_0 carbamoyl transferase, NodU family K00612 - - 1.824e-223 706.0
YYD3_k127_249029_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000815 322.0
YYD3_k127_249029_2 DegT/DnrJ/EryC1/StrS aminotransferase family K02805,K13010 - 2.6.1.102,2.6.1.59 0.00000000000000000000000000000000000000000000000003454 188.0
YYD3_k127_251445_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000004104 139.0
YYD3_k127_2516098_0 lipoprotein transporter activity K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 304.0
YYD3_k127_2516098_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006048 302.0
YYD3_k127_2516098_2 PFAM RES domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002215 275.0
YYD3_k127_2516098_3 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000002618 199.0
YYD3_k127_2517815_0 Phosphorylase superfamily K00772,K03783 - 2.4.2.1,2.4.2.28 0.0000000000000000000000000000000000000000000001654 182.0
YYD3_k127_2517815_1 PFAM polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000001617 163.0
YYD3_k127_2519649_0 proline dipeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 414.0
YYD3_k127_2519649_1 N-terminal 7TM region of histidine kinase - - - 0.000000000000000000168 100.0
YYD3_k127_2571664_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 304.0
YYD3_k127_2571664_1 two component, sigma54 specific, transcriptional regulator, Fis family K10943 - - 0.00000000000000000000000000000000000000000000000000000000000000001112 241.0
YYD3_k127_2571664_2 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000009807 156.0
YYD3_k127_2571664_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000004357 121.0
YYD3_k127_257763_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1074.0
YYD3_k127_257763_1 PFAM Acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 401.0
YYD3_k127_257763_2 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000002273 221.0
YYD3_k127_257763_3 signal peptide processing K13280 - 3.4.21.89 0.0009263 49.0
YYD3_k127_2598799_0 PFAM alpha amylase, catalytic K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 330.0
YYD3_k127_2598799_1 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000001796 141.0
YYD3_k127_2631035_0 Polysulphide reductase, NrfD K00185 - - 3.477e-232 726.0
YYD3_k127_2631035_1 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000002751 231.0
YYD3_k127_2631035_2 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000000000000000000000001634 196.0
YYD3_k127_2631035_3 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000002897 184.0
YYD3_k127_2631035_4 cell redox homeostasis K02199,K03671 - - 0.00000000000000000000000000000001903 134.0
YYD3_k127_2631035_5 Vitamin B12 dependent methionine synthase, activation K00548 - 2.1.1.13 0.0000000000000000000000000000003597 137.0
YYD3_k127_2641522_0 FeoA - - - 3.401e-281 883.0
YYD3_k127_2641522_1 BAAT / Acyl-CoA thioester hydrolase C terminal K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004741 271.0
YYD3_k127_2641522_2 iron ion homeostasis K03322,K03709,K04758 - - 0.000000000000000007667 87.0
YYD3_k127_2665121_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 353.0
YYD3_k127_2665121_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000368 165.0
YYD3_k127_2665121_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000001421 133.0
YYD3_k127_2665121_3 Tetratricopeptide repeat - - - 0.0000001069 63.0
YYD3_k127_2665561_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004715 418.0
YYD3_k127_2665561_1 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 330.0
YYD3_k127_2665561_2 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000001409 196.0
YYD3_k127_2665561_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K10778 - 2.1.1.63 0.000000000000000000000000000000000000001159 153.0
YYD3_k127_2665561_4 - - - - 0.00000000000000000000000000000000001255 139.0
YYD3_k127_2665881_0 Secretin and TonB N terminus short domain K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 362.0
YYD3_k127_2690341_0 beta-N-acetylhexosaminidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000002729 235.0
YYD3_k127_2690341_1 PFAM Uncharacterised protein family UPF0150 - - - 0.00004156 46.0
YYD3_k127_2712924_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000000000000000000000000000000000000000002 224.0
YYD3_k127_2712924_1 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000003703 211.0
YYD3_k127_2712924_3 Thrombospondin type 3 - - - 0.000000000000241 84.0
YYD3_k127_2745408_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 364.0
YYD3_k127_2745408_1 Serine/Threonine protein kinases, catalytic domain K08884,K12132 GO:0002237,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009847,GO:0009987,GO:0010033,GO:0010243,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0032494,GO:0032502,GO:0036211,GO:0042221,GO:0042834,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071224,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0071944,GO:0097367,GO:0140096,GO:1901564,GO:1901698,GO:1901699,GO:1901700,GO:1901701 2.7.11.1 0.00000000000000000000000000000000000000001982 170.0
YYD3_k127_2745408_2 PFAM cyclic nucleotide-binding K07001 - - 0.00000000000003361 77.0
YYD3_k127_2745408_3 Belongs to the glycosyl hydrolase 43 family K01278,K03561,K12287 - 3.4.14.5 0.00000001388 69.0
YYD3_k127_2745408_4 amine dehydrogenase activity - - - 0.0002816 55.0
YYD3_k127_275272_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005176 338.0
YYD3_k127_275272_1 Thrombospondin type 3 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000001572 256.0
YYD3_k127_275272_2 Zn_pept K05996 - 3.4.17.18 0.000000000000000000000000000000000000005188 163.0
YYD3_k127_275272_3 carboxypeptidase K05996 - 3.4.17.18 0.00000000000000000000000000000000292 138.0
YYD3_k127_275272_4 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.00000000000000000000000000001503 130.0
YYD3_k127_275272_5 UbiA prenyltransferase family K02548 - 2.5.1.74 0.0004377 51.0
YYD3_k127_2759422_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004695 422.0
YYD3_k127_2759422_1 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01885,K01894 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000014 277.0
YYD3_k127_2759422_2 - - - - 0.0005216 51.0
YYD3_k127_2763370_0 Belongs to the aldehyde dehydrogenase family K00128,K00130,K10217 - 1.2.1.3,1.2.1.32,1.2.1.8,1.2.1.85 7.464e-202 639.0
YYD3_k127_2763370_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005608 301.0
YYD3_k127_2763370_2 short-chain dehydrogenase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000717 300.0
YYD3_k127_2763370_3 Translation initiation inhibitor, yjgF family K15067 - 3.5.99.5 0.0000000000000000000000000000000000000000000000000000001574 198.0
YYD3_k127_2763370_4 Zn peptidase - - - 0.00000000000000000000000000000000000000395 164.0
YYD3_k127_2763370_5 Periplasmic or secreted lipoprotein - - - 0.0000000000000004637 89.0
YYD3_k127_2763370_6 Aspartyl protease - - - 0.000000000000083 84.0
YYD3_k127_2769426_0 Iron-storage protein K02217 - 1.16.3.2 0.0000000000000000000000000000000000000000002122 164.0
YYD3_k127_2769426_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000001127 157.0
YYD3_k127_2769426_3 PFAM Formylglycine-generating sulfatase enzyme K20333 - - 0.0000000000000000000000000000001675 142.0
YYD3_k127_2772421_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009479 576.0
YYD3_k127_2772421_1 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 0.00000000000000000000000000000000000000000000000003751 206.0
YYD3_k127_2772421_2 ECF sigma factor - - - 0.0000000000000000000000000000000000000000009744 166.0
YYD3_k127_2772421_3 - - - - 0.00000000000000000000000003058 127.0
YYD3_k127_2772421_4 DNA helicase K03654 - 3.6.4.12 0.0000000000000000003167 89.0
YYD3_k127_2772421_5 geranylgeranyl reductase - - - 0.0000004548 53.0
YYD3_k127_2775875_0 PFAM Aminotransferase, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004682 327.0
YYD3_k127_2775875_1 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002321 278.0
YYD3_k127_2775875_2 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000002059 265.0
YYD3_k127_2775875_3 tRNA pseudouridine synthase activity K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000008174 250.0
YYD3_k127_2775875_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000001113 72.0
YYD3_k127_2775875_5 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000002045 70.0
YYD3_k127_2830184_0 Putative methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 484.0
YYD3_k127_2830184_1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 310.0
YYD3_k127_2859938_0 Elongation factor G, domain IV K02355 - - 4.189e-235 746.0
YYD3_k127_2859938_1 Asparaginyl-tRNA synthetase K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000002389 214.0
YYD3_k127_2859938_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 0.0000000000000000000000000000000000183 136.0
YYD3_k127_2859938_3 Proline dehydrogenase K00318 - - 0.00000000000000002977 87.0
YYD3_k127_2859938_4 chaperone-mediated protein folding - - - 0.0001934 53.0
YYD3_k127_2880389_0 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 475.0
YYD3_k127_2880389_1 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 409.0
YYD3_k127_2880389_2 TIGRFAM RarD protein, DMT superfamily transporter K05786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 307.0
YYD3_k127_2880389_3 Belongs to the serpin family K13963 - - 0.00000000000000000000000000000000000000000000000000000000000000000007117 251.0
YYD3_k127_2880389_4 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000008949 193.0
YYD3_k127_2880389_5 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000004036 186.0
YYD3_k127_2880389_6 PIN domain - - - 0.000000000000000000005952 98.0
YYD3_k127_2880389_7 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000000001834 83.0
YYD3_k127_2882243_0 signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 362.0
YYD3_k127_2882243_1 Two component regulator propeller K17763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004952 268.0
YYD3_k127_2882243_2 Porin subfamily - - - 0.00000000000000000000000000000000000000000000000000002674 207.0
YYD3_k127_2910008_0 Putative citrate transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 514.0
YYD3_k127_2910008_1 LytB protein K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 290.0
YYD3_k127_2910008_2 pseudouridine synthase activity K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000267 192.0
YYD3_k127_2910008_3 FIST N domain - - - 0.00000000000000000000000000000000000000007685 167.0
YYD3_k127_2910008_5 domain protein K03499 - - 0.00005465 50.0
YYD3_k127_2911672_1 amino acid K03294 - - 0.00000000000000000000008855 103.0
YYD3_k127_2911672_2 DNA alkylation repair enzyme - - - 0.000000008641 62.0
YYD3_k127_2912372_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 1.918e-302 937.0
YYD3_k127_2912372_1 Transcription factor zinc-finger K09981 - - 0.00000000000000000000000000000000000000000000000000000005486 207.0
YYD3_k127_2912372_2 Phosphopantetheine attachment site - - - 0.00000000000000000000000000000000000000000000000000000006824 208.0
YYD3_k127_2912372_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000003436 119.0
YYD3_k127_2912372_5 - - - - 0.0004335 46.0
YYD3_k127_29396_0 HD domain - - - 0.00000000000000000000000000000000001184 143.0
YYD3_k127_29396_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000588 128.0
YYD3_k127_29396_2 transport - - - 0.00000000000000788 84.0
YYD3_k127_29396_3 Thermolysin metallopeptidase, alpha-helical domain K01400,K08777 GO:0005575,GO:0005576 3.4.24.28 0.000004557 60.0
YYD3_k127_2962622_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 3.884e-201 636.0
YYD3_k127_2962622_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 432.0
YYD3_k127_2962622_2 PFAM ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002738 296.0
YYD3_k127_2962622_3 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.0000000000000000000000000002801 123.0
YYD3_k127_2962622_4 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000001429 59.0
YYD3_k127_2962622_5 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.0000001908 64.0
YYD3_k127_2991323_0 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 488.0
YYD3_k127_2991323_1 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 309.0
YYD3_k127_2991323_10 - - - - 0.00001565 51.0
YYD3_k127_2991323_11 YCII-related domain K09780 - - 0.0005502 47.0
YYD3_k127_2991323_2 MatE K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004325 289.0
YYD3_k127_2991323_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000239 257.0
YYD3_k127_2991323_4 peptidyl-prolyl cis-trans isomerase activity K03769,K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000002286 173.0
YYD3_k127_2991323_5 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000000000000000000000001187 152.0
YYD3_k127_2991323_6 Smr domain - - - 0.0000000000000000000000000006358 123.0
YYD3_k127_2991323_7 Carbon starvation protein K06200 - - 0.00000000000003096 73.0
YYD3_k127_2991323_8 Contains selenocysteine K07401 - - 0.000000000000135 72.0
YYD3_k127_2991323_9 Predicted membrane protein (DUF2231) - - - 0.0000000341 66.0
YYD3_k127_3031217_0 - - - - 0.000000004276 70.0
YYD3_k127_3043424_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009567 531.0
YYD3_k127_3043424_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006246 488.0
YYD3_k127_3043424_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000005992 235.0
YYD3_k127_3043424_3 Lumazine binding domain K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000000005249 199.0
YYD3_k127_3043424_4 KH domain K06960 - - 0.0000000000000000000006886 101.0
YYD3_k127_3043424_5 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.00000000000000000001104 99.0
YYD3_k127_3043424_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000001428 95.0
YYD3_k127_3051659_0 Eco57I restriction-modification methylase K07317 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 494.0
YYD3_k127_3051659_1 DNA restriction-modification system K07317 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 430.0
YYD3_k127_3051659_2 nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 345.0
YYD3_k127_3051659_3 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000002072 111.0
YYD3_k127_3051659_4 Amb_all K01728 - 4.2.2.2 0.000003796 60.0
YYD3_k127_3053880_0 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000007423 133.0
YYD3_k127_3053880_1 Oxidoreductase FAD-binding domain - - - 0.0000000000000000000000000000451 135.0
YYD3_k127_3053880_2 Thioesterase K07107 - - 0.00000000000000000003074 103.0
YYD3_k127_3053880_3 Tetratricopeptide repeat - - - 0.00000000000000001538 95.0
YYD3_k127_3069683_0 ATP-dependent helicase K03579 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009274 394.0
YYD3_k127_3069683_1 daunorubicin resistance ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 335.0
YYD3_k127_3069683_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000003438 258.0
YYD3_k127_3069683_3 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000002562 254.0
YYD3_k127_3069683_4 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000009881 236.0
YYD3_k127_3069683_5 PFAM AMMECR1 domain protein K09141 - - 0.00000000000000000000000000000000000001699 160.0
YYD3_k127_3069683_6 Memo-like protein - - - 0.000000000000000000000000000000000139 142.0
YYD3_k127_3099235_0 saccharopine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 353.0
YYD3_k127_3099235_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000008496 170.0
YYD3_k127_3099235_2 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000001346 122.0
YYD3_k127_3099235_3 Tetratricopeptide repeat K05807 - - 0.00000000000000000000001907 113.0
YYD3_k127_3099235_4 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0007365 43.0
YYD3_k127_3120235_0 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008052 376.0
YYD3_k127_3120235_1 Type II secretion system protein G K02456 - - 0.00000000000000000000000000001309 124.0
YYD3_k127_3120235_2 - - - - 0.0000000008738 68.0
YYD3_k127_3120235_3 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000001068 73.0
YYD3_k127_3120746_0 Heat shock 70 kDa protein K04043 - - 1.973e-228 726.0
YYD3_k127_3120746_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 382.0
YYD3_k127_3120746_2 PFAM Band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 331.0
YYD3_k127_3120746_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008503 280.0
YYD3_k127_3120746_4 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000001837 191.0
YYD3_k127_3120746_5 diguanylate cyclase - - - 0.00000000000000000000000000000000005309 153.0
YYD3_k127_3120746_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.0000000000000000000000000008032 126.0
YYD3_k127_3120746_7 Sporulation related domain - - - 0.00001582 54.0
YYD3_k127_3165996_0 Aromatic amino acid lyase K01745 - 4.3.1.3 2.71e-226 714.0
YYD3_k127_3165996_1 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 432.0
YYD3_k127_3165996_2 ATP ADP translocase K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003821 401.0
YYD3_k127_3170368_0 Protein of unknown function (DUF2891) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 484.0
YYD3_k127_3170368_1 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006989 453.0
YYD3_k127_3170368_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000004347 159.0
YYD3_k127_3170368_4 TIGRFAM RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 K03088 - - 0.0000006301 60.0
YYD3_k127_3170445_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0000000000000000000000001802 108.0
YYD3_k127_3170445_1 LVIVD repeat K01179 - 3.2.1.4 0.0000003982 61.0
YYD3_k127_3170445_2 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides - - - 0.0001261 53.0
YYD3_k127_3179167_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 1.041e-313 983.0
YYD3_k127_3179167_1 Glutamine synthetase type III K01915 - 6.3.1.2 3.869e-298 931.0
YYD3_k127_3179167_10 Transmembrane and TPR repeat-containing protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048878,GO:0050801,GO:0055065,GO:0055074,GO:0055080,GO:0065007,GO:0065008,GO:0072507,GO:0098771,GO:0098827 - 0.000000000000000000000005226 118.0
YYD3_k127_3179167_11 outer membrane efflux protein - - - 0.0000007855 53.0
YYD3_k127_3179167_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 4.131e-296 944.0
YYD3_k127_3179167_4 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000000000000000000000000000000000000000000000000000000000000365 237.0
YYD3_k127_3179167_5 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703,K20452 - 4.2.1.33,4.2.1.35,4.2.1.85 0.000000000000000000000000000000000000000000000000000000000000001155 233.0
YYD3_k127_3179167_6 allophanate hydrolase subunit 2 K06350 - - 0.0000000000000000000000000000000000000000000000000000000000005075 231.0
YYD3_k127_3179167_7 Allophanate hydrolase subunit 1 K06351 - - 0.0000000000000000000000000000000000000000000127 189.0
YYD3_k127_3179167_8 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000002198 133.0
YYD3_k127_3179167_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000007653 127.0
YYD3_k127_3185426_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 1.474e-200 635.0
YYD3_k127_3185426_1 DNA polymerase III alpha subunit K02337,K14162 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009237 555.0
YYD3_k127_3199946_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 3.712e-272 848.0
YYD3_k127_3199946_1 Putative metal-binding domain of cation transport ATPase K01533 - 3.6.3.4 0.0000000000000000000000000000000000000000000000000000002082 202.0
YYD3_k127_3199946_2 TIGRFAM cytochrome oxidase maturation protein, cbb3-type - - - 0.000001591 59.0
YYD3_k127_3209209_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 591.0
YYD3_k127_3209209_1 TIGRFAM 6-phosphogluconate dehydrogenase (decarboxylating) K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 387.0
YYD3_k127_3209209_2 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006951 299.0
YYD3_k127_321163_0 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000002473 240.0
YYD3_k127_321163_1 lipid a biosynthesis - - - 0.00000000000000000000000000000001965 128.0
YYD3_k127_321163_2 PFAM von Willebrand factor type A - - - 0.000000000000000000000000001283 127.0
YYD3_k127_321163_3 Phospholipid methyltransferase - - - 0.000000000000000000000000001946 121.0
YYD3_k127_321163_4 Pyruvate phosphate dikinase, PEP K01006,K01007 - 2.7.9.1,2.7.9.2 0.000000000000000000001021 101.0
YYD3_k127_321163_5 serine threonine protein kinase - - - 0.0000000001698 73.0
YYD3_k127_321163_6 serine threonine protein kinase - - - 0.00006402 53.0
YYD3_k127_3228679_0 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 4.253e-253 791.0
YYD3_k127_3228679_1 ImpA, N-terminal, type VI secretion system K11902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 297.0
YYD3_k127_3228679_2 Type VI secretion protein, VC_A0107 family K11901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003232 276.0
YYD3_k127_3228679_3 Type VI secretion system effector, Hcp K06887,K11903 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001402 244.0
YYD3_k127_3228679_4 protein conserved in bacteria K11891 - - 0.000000000000000004497 100.0
YYD3_k127_3228679_5 Uncharacterized protein conserved in bacteria (DUF2094) K11890 - - 0.0003251 52.0
YYD3_k127_323603_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 452.0
YYD3_k127_323603_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 420.0
YYD3_k127_323603_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 388.0
YYD3_k127_323603_3 Thrombospondin type 3 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 366.0
YYD3_k127_323603_4 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 319.0
YYD3_k127_323603_5 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009488 274.0
YYD3_k127_323603_6 von Willebrand factor, type A - - - 0.000000000000003847 91.0
YYD3_k127_323603_7 Uncharacterised protein family (UPF0158) - - - 0.000000001551 65.0
YYD3_k127_323603_8 Methyltransferase domain - - - 0.00000002841 66.0
YYD3_k127_3236495_0 PFAM Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 348.0
YYD3_k127_3236495_1 short-chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000007406 226.0
YYD3_k127_3236495_2 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000001212 185.0
YYD3_k127_3236495_3 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000001432 144.0
YYD3_k127_3236495_5 Pfam Thioredoxin - - - 0.00000000000004709 85.0
YYD3_k127_3263853_0 PFAM AMP-dependent synthetase and ligase K01897,K18661 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 548.0
YYD3_k127_3263853_1 BAAT / Acyl-CoA thioester hydrolase C terminal K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 457.0
YYD3_k127_3263853_10 marr family - - - 0.0000000000001769 77.0
YYD3_k127_3263853_11 acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.000000000009201 65.0
YYD3_k127_3263853_12 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01585 - 4.1.1.19 0.000000000009785 66.0
YYD3_k127_3263853_13 - - - - 0.00000005502 60.0
YYD3_k127_3263853_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 381.0
YYD3_k127_3263853_3 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 379.0
YYD3_k127_3263853_4 Ribosomal protein L11 methyltransferase (PrmA) K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000001694 264.0
YYD3_k127_3263853_5 Carbon-nitrogen hydrolase K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000001452 189.0
YYD3_k127_3263853_6 FR47-like protein - - - 0.000000000000000000000000000000000000000000003873 171.0
YYD3_k127_3263853_7 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.00000000000000000000000000000000000007827 162.0
YYD3_k127_3263853_8 - - - - 0.000000000000000000000003201 113.0
YYD3_k127_3263853_9 Protein of unknown function (DUF2892) - - - 0.00000000000000004864 93.0
YYD3_k127_3267301_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 4.73e-197 625.0
YYD3_k127_3267301_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 496.0
YYD3_k127_3267301_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000178 268.0
YYD3_k127_3267301_3 L-lysine 6-monooxygenase (NADPH-requiring) K07222 - - 0.00000000000000000000000000000000000003679 145.0
YYD3_k127_3267301_4 TIGRFAM addiction module toxin, Txe YoeB family K19158 - - 0.00000000000000000000000000000000002677 138.0
YYD3_k127_3267301_5 Antitoxin component of a toxin-antitoxin (TA) module K19159 - - 0.0000000000000000000006427 98.0
YYD3_k127_3267301_6 histone H2A K63-linked ubiquitination K02283 - - 0.00000000002012 74.0
YYD3_k127_3270651_0 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 1.402e-221 698.0
YYD3_k127_3270651_1 PFAM Silent information regulator protein Sir2 K12410 - - 0.0000000000000000000000000000000000000000000000000000001928 215.0
YYD3_k127_3270651_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000002351 190.0
YYD3_k127_3270651_3 TGS domain K06944 - - 0.00000000000001481 74.0
YYD3_k127_3270651_4 - - - - 0.000001569 61.0
YYD3_k127_328621_0 PFAM NAD-dependent epimerase dehydratase K01710,K08678 - 4.1.1.35,4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 490.0
YYD3_k127_328621_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 320.0
YYD3_k127_328621_2 protein conserved in bacteria K09778 - - 0.000000000000000000000000000000000000000000000000004062 190.0
YYD3_k127_328621_3 Capsular exopolysaccharide family - - - 0.000000000000000000000000004403 116.0
YYD3_k127_328621_4 Uncharacterised nucleotidyltransferase - - - 0.000000000000001349 91.0
YYD3_k127_3295605_0 DNA polymerase K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 574.0
YYD3_k127_3295605_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000007078 249.0
YYD3_k127_3295605_2 PFAM bifunctional deaminase-reductase domain protein K14654 - 1.1.1.302 0.000000000000000000000000000000000000000001248 165.0
YYD3_k127_3295605_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000004894 145.0
YYD3_k127_3295605_4 COG0607 Rhodanese-related sulfurtransferase - - - 0.0000000000000002481 93.0
YYD3_k127_3295605_5 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.00000000003577 64.0
YYD3_k127_3295605_6 Zn_pept K05996 - 3.4.17.18 0.0000008869 61.0
YYD3_k127_3308141_0 PFAM von Willebrand factor type A - - - 0.000000000000000000000000000001266 138.0
YYD3_k127_3308141_1 O-methyltransferase - - - 0.0000002273 58.0
YYD3_k127_3308141_2 Carboxypeptidase regulatory-like domain - - - 0.0001582 52.0
YYD3_k127_3318503_0 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005439 552.0
YYD3_k127_3318503_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000007325 57.0
YYD3_k127_332514_0 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000003728 89.0
YYD3_k127_332514_1 metallocarboxypeptidase activity K05996 - 3.4.17.18 0.000000000000008632 88.0
YYD3_k127_332514_2 LVIVD repeat K01179 - 3.2.1.4 0.0000000002644 73.0
YYD3_k127_332514_3 Lactonase, 7-bladed beta-propeller - - - 0.00000002052 66.0
YYD3_k127_332514_4 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000007146 49.0
YYD3_k127_3326538_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000003333 228.0
YYD3_k127_3326538_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000002926 70.0
YYD3_k127_3326538_2 Fe2 -dicitrate sensor, membrane component K07165 - - 0.000002685 60.0
YYD3_k127_3326676_0 serine-type peptidase activity K08676 - - 3.071e-215 708.0
YYD3_k127_3326676_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000004885 66.0
YYD3_k127_3326676_2 phosphoglycolate phosphatase activity - - - 0.00000001171 61.0
YYD3_k127_3326676_3 overlaps another CDS with the same product name K07263,K07623 - - 0.000003557 59.0
YYD3_k127_333098_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 1.712e-280 893.0
YYD3_k127_333098_1 Doubled CXXCH motif (Paired_CXXCH_1) - - - 1.002e-226 725.0
YYD3_k127_333098_2 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 470.0
YYD3_k127_333098_3 PPIC-type PPIASE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002626 306.0
YYD3_k127_333098_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000003257 240.0
YYD3_k127_333098_5 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000004676 196.0
YYD3_k127_333098_6 Putative bacterial lipoprotein (DUF799) - - - 0.0000000000000000000000000000000000000000000000003052 203.0
YYD3_k127_333098_7 - - - - 0.00000000000000000000000000000000000000000004421 175.0
YYD3_k127_333753_0 Belongs to the RtcB family K14415 - 6.5.1.3 2.297e-194 617.0
YYD3_k127_333753_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 370.0
YYD3_k127_333753_10 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000003705 60.0
YYD3_k127_333753_12 His Kinase A (phosphoacceptor) domain - - - 0.0003245 49.0
YYD3_k127_333753_2 PFAM response regulator receiver - - - 0.00000000000000000000000000000000000008069 147.0
YYD3_k127_333753_3 Outer membrane lipoprotein - - - 0.000000000000000000000009115 110.0
YYD3_k127_333753_4 PFAM Archease protein family (DUF101 UPF0211) - - - 0.0000000000000000000003783 113.0
YYD3_k127_333753_5 methylamine metabolic process - - - 0.000000000000000000019 105.0
YYD3_k127_333753_6 IMP dehydrogenase activity K04767,K07182 - - 0.0000000000000000261 89.0
YYD3_k127_333753_7 Rhodanese Homology Domain - - - 0.00000000000002702 87.0
YYD3_k127_333753_8 Phage integrase family - - - 0.000000000002945 68.0
YYD3_k127_333753_9 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000607 66.0
YYD3_k127_3344163_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 302.0
YYD3_k127_3344163_1 - - - - 0.0000103 59.0
YYD3_k127_3350732_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 3.743e-263 817.0
YYD3_k127_3350732_1 TIGRFAM FeS assembly ATPase SufC K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 391.0
YYD3_k127_3350732_2 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 322.0
YYD3_k127_3350732_3 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000007399 169.0
YYD3_k127_3350732_4 transcriptional regulator - - - 0.0000000000000000000000000003091 117.0
YYD3_k127_3351613_0 FG-GAP repeat - - - 0.0000007346 55.0
YYD3_k127_3351613_1 Nitrous oxidase accessory protein - - - 0.0001484 55.0
YYD3_k127_3351613_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0009165 42.0
YYD3_k127_3401629_0 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 439.0
YYD3_k127_3401629_1 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006156 343.0
YYD3_k127_3401629_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K01142,K10773 GO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033683,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.11.2,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000007928 249.0
YYD3_k127_3401629_3 Hemolysin III K11068 - - 0.00000000000000000000000000000000000000000000000000000000006223 213.0
YYD3_k127_3401629_4 Prolyl oligopeptidase, N-terminal beta-propeller domain K01354 - 3.4.21.83 0.0000000000000000000000000000000000000000000008072 168.0
YYD3_k127_3401629_5 AAA-like domain - - - 0.0000006168 54.0
YYD3_k127_3410700_0 Malate synthase K01638 - 2.3.3.9 9.606e-238 749.0
YYD3_k127_3410700_1 Fumarase C-terminus K01676 GO:0003674,GO:0003824,GO:0004333,GO:0005488,GO:0005515,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016860,GO:0016862,GO:0016999,GO:0017144,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0048037,GO:0050163,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 364.0
YYD3_k127_3410700_2 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001453 287.0
YYD3_k127_3410700_3 ferredoxin oxidoreductase beta subunit K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000001424 211.0
YYD3_k127_3410700_4 reductase K00023,K00059 - 1.1.1.100,1.1.1.36 0.000000000000000000000000000000000000000000000000295 194.0
YYD3_k127_3410700_5 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000001789 156.0
YYD3_k127_3410700_6 3-demethylubiquinone-9 3-O-methyltransferase activity K07003 - - 0.00000000000000000000000000000000002338 156.0
YYD3_k127_3410700_7 Vitamin K epoxide reductase family - - - 0.00000000000000000000000000000001151 144.0
YYD3_k127_3410700_8 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000009499 111.0
YYD3_k127_3410700_9 oxidoreductase activity - - - 0.0002396 53.0
YYD3_k127_3445770_0 Diguanylate cyclase - - - 0.000000000000000000000000000004967 133.0
YYD3_k127_3445770_1 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000003995 117.0
YYD3_k127_3452432_0 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000002689 174.0
YYD3_k127_3452432_1 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000000002643 137.0
YYD3_k127_3452432_2 Putative zinc-finger - - - 0.000000003682 67.0
YYD3_k127_3452432_3 - - - - 0.0008169 51.0
YYD3_k127_3468438_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1161.0
YYD3_k127_3468438_1 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000001033 158.0
YYD3_k127_3468438_2 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000001347 113.0
YYD3_k127_3468438_3 acetyltransferase - - - 0.000000000000001962 84.0
YYD3_k127_3469625_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 3.406e-260 850.0
YYD3_k127_3469625_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 9.877e-237 745.0
YYD3_k127_3469625_10 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000001452 115.0
YYD3_k127_3469625_11 PPIC-type PPIASE domain K03769,K07533 - 5.2.1.8 0.000000000000002042 88.0
YYD3_k127_3469625_2 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 373.0
YYD3_k127_3469625_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 310.0
YYD3_k127_3469625_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009229 266.0
YYD3_k127_3469625_5 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000009758 214.0
YYD3_k127_3469625_6 Protein of unknown function DUF47 K02039,K07220 - - 0.000000000000000000000000000000000000000000000002729 180.0
YYD3_k127_3469625_7 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000646 190.0
YYD3_k127_3469625_8 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000002577 173.0
YYD3_k127_3469625_9 Hfq protein - - - 0.0000000000000000000000000000000001477 136.0
YYD3_k127_3484255_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 421.0
YYD3_k127_3484255_1 PFAM Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000002842 211.0
YYD3_k127_3484255_2 Thrombospondin type 3 repeat - - - 0.000000000000234 83.0
YYD3_k127_3484255_3 Putative metal-binding motif - - - 0.00002806 57.0
YYD3_k127_3497731_0 PFAM Peptidase M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006977 306.0
YYD3_k127_3497731_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000001547 270.0
YYD3_k127_3497731_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000004162 241.0
YYD3_k127_3497731_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000008599 235.0
YYD3_k127_3497731_4 OsmC-like protein - - - 0.0000000000000000000000000000000000002909 145.0
YYD3_k127_3497731_5 alginic acid biosynthetic process K09815,K15727,K20276 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000006095 94.0
YYD3_k127_3497731_6 PKD domain - - - 0.00000000000001692 87.0
YYD3_k127_3497731_7 Thrombospondin type 3 repeat - - - 0.0000000000002798 83.0
YYD3_k127_3497731_8 - - - - 0.00001111 55.0
YYD3_k127_3498917_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 477.0
YYD3_k127_3498917_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001035 253.0
YYD3_k127_3498917_2 PFAM methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007205 246.0
YYD3_k127_3498917_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000000000000000000000000000000000000000000000000002855 222.0
YYD3_k127_3498917_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000002761 184.0
YYD3_k127_3498917_5 HAD hydrolase, family IA, variant 3 - - - 0.0000000000000000000000000000002938 133.0
YYD3_k127_3498917_6 - - - - 0.00000000000000000000000003999 114.0
YYD3_k127_3523672_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000973 515.0
YYD3_k127_3523672_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 440.0
YYD3_k127_3523672_2 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 405.0
YYD3_k127_3523672_3 Biotin-lipoyl like K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 399.0
YYD3_k127_3523672_4 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 338.0
YYD3_k127_3523672_5 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000005291 260.0
YYD3_k127_3523672_6 Oligopeptidase F K08602 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000003618 255.0
YYD3_k127_3523672_7 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000005473 203.0
YYD3_k127_3523672_8 YsiA-like protein, C-terminal region K13770 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000001469 96.0
YYD3_k127_3532479_0 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000001453 190.0
YYD3_k127_3532479_1 Protein of unknown function (DUF1318) K09978 - - 0.000000000000000000000000000005842 127.0
YYD3_k127_3532755_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 428.0
YYD3_k127_3532755_1 tRNA synthetase, class II (D, K and N) K01893 - 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009088 372.0
YYD3_k127_3532755_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 316.0
YYD3_k127_3532755_3 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000005102 231.0
YYD3_k127_3532755_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000005687 234.0
YYD3_k127_3532755_5 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000000000000000003723 216.0
YYD3_k127_3532755_6 DNA polymerase III K02341 - 2.7.7.7 0.0000000000000000000000000000000000006102 160.0
YYD3_k127_3532755_7 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000003503 118.0
YYD3_k127_3534451_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 6.909e-300 953.0
YYD3_k127_3534451_1 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007228 345.0
YYD3_k127_3534451_10 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000000000000000000000001847 168.0
YYD3_k127_3534451_11 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.00000000000000000000000000000000001915 156.0
YYD3_k127_3534451_12 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000001466 123.0
YYD3_k127_3534451_13 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000008864 112.0
YYD3_k127_3534451_14 Rossmann-like domain - - - 0.00000000000000006262 91.0
YYD3_k127_3534451_17 response regulator - - - 0.0001115 53.0
YYD3_k127_3534451_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006815 329.0
YYD3_k127_3534451_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002029 291.0
YYD3_k127_3534451_4 Aminotransferase, class V K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000081 278.0
YYD3_k127_3534451_5 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000211 222.0
YYD3_k127_3534451_6 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000001872 189.0
YYD3_k127_3534451_7 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000007193 194.0
YYD3_k127_3534451_8 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000001383 197.0
YYD3_k127_3534451_9 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000006123 163.0
YYD3_k127_3535424_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 5.805e-234 742.0
YYD3_k127_3535424_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001582 294.0
YYD3_k127_3535424_2 Glycosyl transferase 4-like domain - - - 0.00000525 50.0
YYD3_k127_3559308_0 Domain of unknown function (DUF1846) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 579.0
YYD3_k127_3559308_1 PFAM lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 317.0
YYD3_k127_3559308_2 DNA-templated transcription, initiation - - - 0.0000000000000000000000000000000000000000000000000000001249 201.0
YYD3_k127_3578104_0 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 374.0
YYD3_k127_3578104_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000008114 141.0
YYD3_k127_3578104_2 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 0.00000000000000000000000000004939 135.0
YYD3_k127_3611627_0 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004402 376.0
YYD3_k127_3611627_1 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 354.0
YYD3_k127_3611627_2 PFAM ABC transporter related K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005139 338.0
YYD3_k127_3611627_3 Ketopantoate reductase PanE/ApbA C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005309 287.0
YYD3_k127_3611627_4 ABC 3 transport family K02075 - - 0.00000000000000000000000000000000000000000000000000000000000000004998 231.0
YYD3_k127_3611627_5 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000018 233.0
YYD3_k127_3611627_6 Acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000003849 222.0
YYD3_k127_3611627_7 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000000000000004315 117.0
YYD3_k127_3611627_8 Serine aminopeptidase, S33 - - - 0.00000000000000000000000002633 124.0
YYD3_k127_3611627_9 positive regulation of growth - - - 0.0000000003247 64.0
YYD3_k127_361182_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.021e-279 881.0
YYD3_k127_361182_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 575.0
YYD3_k127_361182_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 421.0
YYD3_k127_361182_3 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000281 406.0
YYD3_k127_361182_4 Ferrous iron transport protein B K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000006306 185.0
YYD3_k127_361182_5 Binds the 23S rRNA K02909 - - 0.000000000000000000000000003401 113.0
YYD3_k127_362823_0 Lipopolysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000001254 165.0
YYD3_k127_362823_1 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000106 152.0
YYD3_k127_362823_2 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000004603 147.0
YYD3_k127_362823_3 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.000002396 59.0
YYD3_k127_362823_4 - - - - 0.0001484 47.0
YYD3_k127_3632618_0 Hydroxymethylglutaryl-coenzyme A reductase K00021 - 1.1.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 619.0
YYD3_k127_3632618_1 ABC1 family K03688 - - 0.0000000000000000000000000000000000000000000000000000000001074 212.0
YYD3_k127_3673900_0 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.0000000000000000000000000000000006937 150.0
YYD3_k127_3673900_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000007862 112.0
YYD3_k127_3673900_2 Protein of unknown function (DUF971) K03593 - - 0.000000000000000000001242 98.0
YYD3_k127_3673900_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0042866,GO:0043436,GO:0043891,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 1.2.1.12 0.00000000000000002977 87.0
YYD3_k127_3673900_4 Type ii and iii secretion system protein - - - 0.00000000000001266 87.0
YYD3_k127_3673900_5 Putative zinc-finger - - - 0.0002845 51.0
YYD3_k127_368321_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.022e-226 716.0
YYD3_k127_368321_1 ATPase activity K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 292.0
YYD3_k127_368321_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000001871 216.0
YYD3_k127_368321_3 NfeD-like C-terminal, partner-binding - - - 0.000000000000002371 82.0
YYD3_k127_368321_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000339 85.0
YYD3_k127_370339_0 Superfamily II DNA RNA helicases, SNF2 family - - - 7.598e-223 702.0
YYD3_k127_370339_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 426.0
YYD3_k127_370339_2 Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001068 265.0
YYD3_k127_370339_3 PemK-like, MazF-like toxin of type II toxin-antitoxin system - - - 0.000000000000000000000000003434 118.0
YYD3_k127_370339_4 SpoVT / AbrB like domain - - - 0.00001745 50.0
YYD3_k127_372088_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 376.0
YYD3_k127_372088_1 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000001782 252.0
YYD3_k127_372088_2 Ribosomal L32p protein family K02911 - - 0.00000000000000000000006852 98.0
YYD3_k127_372088_3 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.0000000000000000000352 98.0
YYD3_k127_372088_4 chaperone-mediated protein folding K08309 - - 0.0000000006132 72.0
YYD3_k127_372088_5 regulator, PATAN and FRGAF domain-containing - - - 0.00002603 57.0
YYD3_k127_3748910_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 421.0
YYD3_k127_3748910_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000001651 249.0
YYD3_k127_3748910_2 Calcium ion binding. It is involved in the biological process described with cell adhesion K04659 GO:0000902,GO:0001501,GO:0001503,GO:0001932,GO:0001934,GO:0001936,GO:0001938,GO:0001968,GO:0002020,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0003416,GO:0003417,GO:0003674,GO:0005102,GO:0005178,GO:0005198,GO:0005201,GO:0005488,GO:0005496,GO:0005499,GO:0005509,GO:0005515,GO:0005518,GO:0005539,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005912,GO:0005924,GO:0005927,GO:0006928,GO:0006950,GO:0007155,GO:0007160,GO:0007275,GO:0007399,GO:0007517,GO:0007610,GO:0008150,GO:0008201,GO:0008284,GO:0008289,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010941,GO:0012505,GO:0014812,GO:0016043,GO:0016203,GO:0016477,GO:0016525,GO:0016528,GO:0016529,GO:0019220,GO:0019222,GO:0019842,GO:0019899,GO:0021700,GO:0022008,GO:0022603,GO:0022607,GO:0022610,GO:0030030,GO:0030054,GO:0030055,GO:0030154,GO:0030182,GO:0030198,GO:0030334,GO:0030335,GO:0030855,GO:0031012,GO:0031175,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031589,GO:0031594,GO:0032101,GO:0032103,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0033555,GO:0033627,GO:0034103,GO:0034976,GO:0035265,GO:0035989,GO:0036094,GO:0040007,GO:0040011,GO:0040012,GO:0040017,GO:0042127,GO:0042325,GO:0042327,GO:0042981,GO:0043062,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043236,GO:0043237,GO:0043394,GO:0043395,GO:0043931,GO:0043933,GO:0044085,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045202,GO:0045765,GO:0045937,GO:0046872,GO:0048265,GO:0048266,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048705,GO:0048731,GO:0048736,GO:0048799,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050678,GO:0050679,GO:0050730,GO:0050731,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0050840,GO:0050896,GO:0050920,GO:0050921,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051216,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051270,GO:0051272,GO:0051451,GO:0051674,GO:0051716,GO:0060173,GO:0060231,GO:0060255,GO:0060343,GO:0060346,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0060429,GO:0060538,GO:0060548,GO:0061053,GO:0061061,GO:0061383,GO:0061430,GO:0061448,GO:0062023,GO:0065003,GO:0065007,GO:0070161,GO:0070977,GO:0071603,GO:0071622,GO:0071624,GO:0071695,GO:0071840,GO:0080090,GO:0090022,GO:0090023,GO:0090136,GO:0097159,GO:0097367,GO:0098609,GO:0098868,GO:0120036,GO:0120039,GO:1901342,GO:1901343,GO:1901681,GO:1902622,GO:1902624,GO:2000026,GO:2000145,GO:2000147,GO:2000181 - 0.0000000000000000000000000003533 130.0
YYD3_k127_3748910_3 cellulase activity - - - 0.000000000000000000002937 108.0
YYD3_k127_3750577_0 response regulator receiver K07714,K10943 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 419.0
YYD3_k127_3750577_1 deaminase K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000000000003244 231.0
YYD3_k127_3750577_2 PFAM ATP-binding region, ATPase domain protein K02668,K07708,K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000002635 220.0
YYD3_k127_3750577_3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000002125 140.0
YYD3_k127_3752429_0 Arabinose 5-phosphate isomerase K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000003957 211.0
YYD3_k127_3752429_1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000003032 164.0
YYD3_k127_3752429_2 heat shock protein binding K05516 - - 0.000001617 57.0
YYD3_k127_3809068_0 Uncharacterized protein conserved in bacteria (DUF2344) - - - 3.039e-194 636.0
YYD3_k127_3809068_1 cell shape determining protein MreB K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 540.0
YYD3_k127_3809068_2 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002953 476.0
YYD3_k127_3809068_3 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004824 273.0
YYD3_k127_3809068_4 rod shape-determining protein MreC K03570 - - 0.000000000000000000000000000001052 132.0
YYD3_k127_3809068_5 peptidylprolyl isomerase K03770 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0008150,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031233,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0061077,GO:0071575,GO:0071944,GO:0098552 5.2.1.8 0.00000000000008626 85.0
YYD3_k127_3809068_6 FecR protein - - - 0.000000001342 71.0
YYD3_k127_3832700_0 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000002274 178.0
YYD3_k127_3832700_1 Ferredoxin - - - 0.0000000000000000000000000000000000008297 148.0
YYD3_k127_3832700_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000003814 137.0
YYD3_k127_3832700_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0004035 45.0
YYD3_k127_3833142_0 NapC/NirT cytochrome c family, N-terminal region - GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008214 534.0
YYD3_k127_3833142_1 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009016 282.0
YYD3_k127_3833142_2 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002226 267.0
YYD3_k127_384968_0 Belongs to the ClpA ClpB family K03696 - - 3.048e-298 935.0
YYD3_k127_384968_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005677 294.0
YYD3_k127_384968_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001041 286.0
YYD3_k127_384968_3 Surface antigen variable number K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006854 291.0
YYD3_k127_384968_4 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006112 267.0
YYD3_k127_384968_5 FabA-like domain K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000001452 189.0
YYD3_k127_384968_6 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000253 148.0
YYD3_k127_384968_7 Beta-lactamase - - - 0.000000000000000000000057 107.0
YYD3_k127_384968_8 Beta-lactamase - - - 0.00000000000006227 74.0
YYD3_k127_384968_9 unfolded protein binding K06142 - - 0.00000001842 68.0
YYD3_k127_3850097_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.583e-292 930.0
YYD3_k127_3850097_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000002899 195.0
YYD3_k127_3850097_2 Fibronectin-binding A domain protein - - - 0.0000000000000000000000000000004334 130.0
YYD3_k127_3850097_3 PFAM Heat shock protein Hsp20 K13993 - - 0.0000000000000000111 94.0
YYD3_k127_3850097_4 lysyltransferase activity K07027 - - 0.00000000000000001946 94.0
YYD3_k127_3850097_5 CoA-transferase family III - - - 0.000003464 56.0
YYD3_k127_3856130_0 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000001903 258.0
YYD3_k127_3856130_1 heat shock protein binding - - - 0.00000000000000000004725 105.0
YYD3_k127_3856130_2 Domain of unknown function (DUF4388) - - - 0.00000000000000001686 97.0
YYD3_k127_3856130_3 Trm112p-like protein K09791 - - 0.0000000000000006228 79.0
YYD3_k127_3898086_0 Stage II sporulation protein K06381 - - 0.000000000000000000000000000000000000000000000000000000000000000001456 257.0
YYD3_k127_3898086_1 GTP cyclohydrolase I K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000001091 183.0
YYD3_k127_3898086_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000001031 145.0
YYD3_k127_3898086_3 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000004202 124.0
YYD3_k127_3898086_4 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01006 - 2.7.9.1 0.0005888 46.0
YYD3_k127_3910969_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 9.562e-239 745.0
YYD3_k127_3910969_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 625.0
YYD3_k127_3910969_2 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 310.0
YYD3_k127_3910969_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000002378 83.0
YYD3_k127_3964208_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000142 123.0
YYD3_k127_3964208_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000004306 87.0
YYD3_k127_3964208_2 WD40-like Beta Propeller (InterPro IPR011659), Six-bladed beta-propeller, TolB-like (InterPro IPR011042) - - - 0.0000003906 64.0
YYD3_k127_3977001_0 Thrombospondin type 3 repeat - - - 0.0000000000000000000000003406 123.0
YYD3_k127_3977001_1 GDSL-like Lipase/Acylhydrolase - - - 0.00000004051 67.0
YYD3_k127_4003827_0 homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 9.933e-213 677.0
YYD3_k127_4003827_1 Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 548.0
YYD3_k127_4003827_2 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006673 423.0
YYD3_k127_4003827_3 Lysin motif K06194 - - 0.00000000000000000000000000000000000000003584 167.0
YYD3_k127_4003827_4 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000000000003419 150.0
YYD3_k127_4003827_5 Belongs to the ompA family - - - 0.0000000000000000000000000000000006926 140.0
YYD3_k127_4003827_6 phosphatase activity K07025 - - 0.000000000000000000000000000002623 134.0
YYD3_k127_4003827_7 Thioredoxin-like K06196 - - 0.0000000000009241 82.0
YYD3_k127_4003827_8 - - - - 0.0000000009215 70.0
YYD3_k127_4003827_9 Transcriptional regulatory protein, C terminal K07667 - - 0.000001759 61.0
YYD3_k127_4021913_0 aminopeptidase - - - 0.00000000000000000000000000001515 137.0
YYD3_k127_4021913_1 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000002939 108.0
YYD3_k127_4021913_2 COG2146 Ferredoxin subunits of nitrite reductase and K00363,K05710 - 1.7.1.15 0.00000000000000006534 92.0
YYD3_k127_4037613_0 cellulose binding - - - 0.0 1269.0
YYD3_k127_4037613_1 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 482.0
YYD3_k127_4044799_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1164.0
YYD3_k127_4044799_1 Sodium:neurotransmitter symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 371.0
YYD3_k127_4044799_2 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000002404 184.0
YYD3_k127_4044799_3 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000007416 166.0
YYD3_k127_4044799_4 salt-induced outer membrane protein - - - 0.0000001105 64.0
YYD3_k127_4077265_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 485.0
YYD3_k127_4077265_1 Polymer-forming cytoskeletal - - - 0.00000000000000000000001265 115.0
YYD3_k127_4077265_2 PBS lyase HEAT-like repeat - - - 0.00000000008146 73.0
YYD3_k127_4077265_3 methyltransferase - - - 0.0000004049 60.0
YYD3_k127_4080567_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 434.0
YYD3_k127_4080567_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000001573 235.0
YYD3_k127_4080567_2 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000000000000225 160.0
YYD3_k127_4080567_3 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000001822 107.0
YYD3_k127_4080567_4 penicillin-binding protein K21464 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.4.1.129,3.4.16.4 0.0008741 42.0
YYD3_k127_4084001_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 6.755e-319 1004.0
YYD3_k127_4084001_1 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008149 287.0
YYD3_k127_4084001_2 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000007197 224.0
YYD3_k127_4084001_3 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000004609 219.0
YYD3_k127_4084001_4 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000001342 240.0
YYD3_k127_4084001_5 Metallo-beta-lactamase superfamily K02238 - - 0.0000000000000000000000000000000000000000000000000000001049 221.0
YYD3_k127_4084001_6 Peptidase family M50 - - - 0.000000000000000000000000000000000000000001703 169.0
YYD3_k127_4084001_7 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000003888 140.0
YYD3_k127_4084001_8 cheY-homologous receiver domain - - - 0.00000000000000000000000000000714 128.0
YYD3_k127_4084001_9 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000341 92.0
YYD3_k127_4088311_0 ATPase activity K02045 - 3.6.3.25 4.259e-200 642.0
YYD3_k127_4088311_1 ABC transporter transmembrane region K06147,K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 544.0
YYD3_k127_4088311_2 Sulfate transporter subunit K02048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 479.0
YYD3_k127_4088311_3 sulfate ABC transporter, inner membrane subunit CysT K02046,K15496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 389.0
YYD3_k127_4088311_4 sulfate transport system, permease K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 368.0
YYD3_k127_4088311_5 ABC transporter transmembrane region K06147,K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 370.0
YYD3_k127_4088311_6 Phosphate-selective porin O and P K07221 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006634 351.0
YYD3_k127_4088311_7 His Kinase A (phosphoacceptor) domain K07641,K10819 - 2.7.13.3 0.00000004626 58.0
YYD3_k127_4099078_0 Cytochrome c K12263 - - 0.0000000000000000000001802 105.0
YYD3_k127_4099078_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000006785 72.0
YYD3_k127_4110664_0 Response receiver-modulated cyclic diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 322.0
YYD3_k127_4110664_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000004815 174.0
YYD3_k127_4110664_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000002337 63.0
YYD3_k127_4112925_0 Cupin domain - - - 0.00000000000000000000000000000000000000002381 167.0
YYD3_k127_4112925_1 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000001105 118.0
YYD3_k127_4112925_2 bacterial OsmY and nodulation domain - - - 0.00000000002441 76.0
YYD3_k127_4125244_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 8.697e-290 903.0
YYD3_k127_4125244_1 Ferredoxin - - - 0.00000000000000000000000278 108.0
YYD3_k127_4125244_2 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000001579 82.0
YYD3_k127_4129530_0 Elongation factor SelB, winged helix K03833 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 374.0
YYD3_k127_4129530_1 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 304.0
YYD3_k127_4130988_0 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000003123 207.0
YYD3_k127_4130988_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000005177 194.0
YYD3_k127_4130988_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K15984 - 2.1.1.242 0.0000000000000000000000000000000000000000002725 168.0
YYD3_k127_4130988_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0001057 49.0
YYD3_k127_4141245_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 5.979e-243 770.0
YYD3_k127_4141245_1 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000001651 183.0
YYD3_k127_4141245_2 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000002747 166.0
YYD3_k127_4141245_3 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000002148 98.0
YYD3_k127_4142427_0 Amino acid permease K03756,K03759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 428.0
YYD3_k127_4142427_1 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 366.0
YYD3_k127_4142427_2 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000004051 163.0
YYD3_k127_4159367_0 Domain of unknown function (DUF1998) K02336,K06877 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 2.7.7.7 1.34e-278 886.0
YYD3_k127_4159367_1 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 411.0
YYD3_k127_4159367_2 N-Acetylmuramoyl-L-alanine amidase K01448,K02172 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000779 256.0
YYD3_k127_4159367_3 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000008611 148.0
YYD3_k127_4159367_4 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000001444 120.0
YYD3_k127_4159367_5 peptidase - - - 0.00000000000000000002418 105.0
YYD3_k127_4159367_6 Putative regulatory protein - - - 0.000000000000000002256 99.0
YYD3_k127_4159367_7 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000000009116 85.0
YYD3_k127_4159367_8 cellular component assembly - - - 0.000000001012 66.0
YYD3_k127_4164657_0 4Fe-4S dicluster domain - - - 3.445e-205 658.0
YYD3_k127_4164657_1 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002475 309.0
YYD3_k127_4164657_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000004452 186.0
YYD3_k127_4164657_3 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000004245 179.0
YYD3_k127_4164657_4 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000007848 158.0
YYD3_k127_4164657_5 COG2146 Ferredoxin subunits of nitrite reductase and K00363 - 1.7.1.15 0.0000000000000000001713 92.0
YYD3_k127_4164657_6 Domain of unknown function (DUF4398) - - - 0.000006082 55.0
YYD3_k127_4164657_7 - - - - 0.0004226 45.0
YYD3_k127_4177594_0 TOBE domain K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000009929 280.0
YYD3_k127_4177594_1 Molybdate ABC transporter K02018 - - 0.0000000000000000000000000000000000000000000000000000001224 211.0
YYD3_k127_4177594_2 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015098,GO:0015103,GO:0015318,GO:0015399,GO:0015405,GO:0015412,GO:0015689,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030151,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0034220,GO:0042597,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043169,GO:0043225,GO:0043492,GO:0044464,GO:0046872,GO:0046914,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0099133,GO:1901359 - 0.0000000000000000000000000000000000000000000000000003308 196.0
YYD3_k127_4177594_3 Acetyltransferase (GNAT) domain - - - 0.0000009963 51.0
YYD3_k127_4178583_0 PFAM MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 409.0
YYD3_k127_4178583_1 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000003275 218.0
YYD3_k127_4178583_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000007574 187.0
YYD3_k127_4183455_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 308.0
YYD3_k127_4183455_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009398 310.0
YYD3_k127_4183455_2 Deoxynucleoside kinase K15518 - 2.7.1.113 0.0000000000000000000000000000000000000000000000000000000000000001388 236.0
YYD3_k127_4183455_3 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000005286 236.0
YYD3_k127_4183455_4 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000002878 123.0
YYD3_k127_4183605_0 nickel-dependent hydrogenase, large subunit K06281 - 1.12.99.6 2.211e-227 711.0
YYD3_k127_4183605_1 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000000002556 151.0
YYD3_k127_4183605_2 Protein of unknown function (DUF433) - - - 0.00000000000000000000000000000000805 128.0
YYD3_k127_4183605_3 - - - - 0.0000000000000000000000000000007981 124.0
YYD3_k127_4194543_0 Polysulphide reductase, NrfD K00185 - - 6.586e-195 630.0
YYD3_k127_4194543_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 489.0
YYD3_k127_4194543_2 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 406.0
YYD3_k127_4194543_3 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 310.0
YYD3_k127_4194543_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009647 269.0
YYD3_k127_4194543_5 Pyridine nucleotide-disulphide oxidoreductase K00384,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.0000000000000000001198 92.0
YYD3_k127_4194543_6 - - - - 0.0000000000000000008818 101.0
YYD3_k127_4204904_0 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 355.0
YYD3_k127_4204904_1 RNA pseudouridylate synthase K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001725 276.0
YYD3_k127_4204904_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000001503 206.0
YYD3_k127_4204904_3 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.000000003353 60.0
YYD3_k127_4229047_0 Mur ligase middle domain K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 458.0
YYD3_k127_4229047_1 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000001591 227.0
YYD3_k127_4229047_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000202 118.0
YYD3_k127_4229047_3 protein involved in outer membrane biogenesis K07289 - - 0.00000000007303 76.0
YYD3_k127_4229823_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 7.068e-197 634.0
YYD3_k127_4229823_1 Ribonuclease E/G family K08300,K08301 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008996,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 298.0
YYD3_k127_4229823_2 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000002153 156.0
YYD3_k127_4229823_3 Thioesterase superfamily - - - 0.00000000000000000000000000000002462 136.0
YYD3_k127_4229823_4 Tetratricopeptide repeat - - - 0.000000000001698 79.0
YYD3_k127_4229823_5 PFAM iron dependent repressor K03709 - - 0.000000006148 63.0
YYD3_k127_4233420_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 3.927e-224 713.0
YYD3_k127_4233420_1 Formiminotransferase domain, N-terminal subdomain K00603,K13990 - 2.1.2.5,4.3.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 501.0
YYD3_k127_4233420_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000000000000000000000002081 204.0
YYD3_k127_4233420_3 Alginate export - - - 0.00000001976 67.0
YYD3_k127_4236778_0 cellulase activity - - - 0.00000000000000000000000000002478 132.0
YYD3_k127_4257024_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0 1011.0
YYD3_k127_4257024_1 von Willebrand factor type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007965 527.0
YYD3_k127_4262997_0 - - - - 0.0000000000000000000000000000000009761 146.0
YYD3_k127_4262997_1 Putative bacterial lipoprotein (DUF799) - - - 0.00000000000000000000000002736 109.0
YYD3_k127_4262997_2 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00002815 56.0
YYD3_k127_4266252_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000001535 257.0
YYD3_k127_4266252_1 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000002194 213.0
YYD3_k127_4266252_2 Glycosyltransferase like family 2 - - - 0.0000000000000000004134 90.0
YYD3_k127_4266252_3 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000001791 90.0
YYD3_k127_4266252_4 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA - - - 0.0006822 53.0
YYD3_k127_4269998_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 406.0
YYD3_k127_4269998_1 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 409.0
YYD3_k127_4269998_2 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001839 290.0
YYD3_k127_4269998_3 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000000000000001738 183.0
YYD3_k127_4269998_4 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K07081,K11782,K11784 - 1.21.98.1,4.2.1.151 0.00000000000000000000000000000000000009561 160.0
YYD3_k127_4269998_5 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000001833 101.0
YYD3_k127_4269998_6 DUF167 - - - 0.000000007678 68.0
YYD3_k127_4304186_0 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000009706 101.0
YYD3_k127_4304186_1 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000007368 92.0
YYD3_k127_4304186_2 Protein kinase domain K08884 - 2.7.11.1 0.00001344 57.0
YYD3_k127_4307869_0 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 325.0
YYD3_k127_4307869_1 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000006767 218.0
YYD3_k127_4312555_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 508.0
YYD3_k127_4312555_1 PFAM RNA binding S1 domain protein K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002585 256.0
YYD3_k127_4312555_2 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000001398 238.0
YYD3_k127_4312555_3 Ion channel - - - 0.0000000000000000000002547 106.0
YYD3_k127_4312555_4 virion core protein (lumpy skin disease virus) - - - 0.0000000000000000000007392 102.0
YYD3_k127_4312555_5 Methyltransferase domain - - - 0.00000000004171 76.0
YYD3_k127_4312555_6 Glycosyl transferase family 2 - - - 0.0000000002234 73.0
YYD3_k127_4319971_0 dehydrogenase, E1 component K11381 - 1.2.4.4 2.893e-224 715.0
YYD3_k127_4319971_1 COG0318, Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007939 357.0
YYD3_k127_4319971_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001963 280.0
YYD3_k127_4319971_3 membrane protein involved in D-alanine - - - 0.000000000000000000000000000000000000000000000000000000000000000001691 254.0
YYD3_k127_4319971_4 Phosphopantetheine attachment site - - - 0.00000000257 61.0
YYD3_k127_4319971_5 lipolytic protein G-D-S-L family - - - 0.00003434 55.0
YYD3_k127_4325385_0 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006586 612.0
YYD3_k127_4325385_1 Hydrophobe Amphiphile Efflux-1 (HAE1) Family K03296,K18138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006246 597.0
YYD3_k127_4325385_2 Biotin-lipoyl like K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 366.0
YYD3_k127_4382753_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 6.591e-272 855.0
YYD3_k127_4382753_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 1.711e-219 688.0
YYD3_k127_4382753_2 Enoyl-CoA hydratase/isomerase K15513 - 4.1.2.44 1.518e-207 660.0
YYD3_k127_4382753_3 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006166 634.0
YYD3_k127_4382753_4 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 GO:0003674,GO:0003824,GO:0004551,GO:0004721,GO:0006139,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0008796,GO:0008803,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0015949,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0034641,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0140096,GO:1901360,GO:1901564 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009907 270.0
YYD3_k127_4382753_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000004361 151.0
YYD3_k127_4382753_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891,K15546 - 2.7.1.71 0.000000000000000000000000000000000006802 145.0
YYD3_k127_4382753_7 deoxyhypusine monooxygenase activity - - - 0.0004376 53.0
YYD3_k127_4384097_0 Pilus formation protein N terminal region K02280 - - 0.000000000000000000000000000000000000000000000000199 187.0
YYD3_k127_4384097_1 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000000000002703 192.0
YYD3_k127_4390605_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 517.0
YYD3_k127_4390605_1 Peptidase C26 K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000001228 229.0
YYD3_k127_4390605_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.00000000000000000000000000000000000000003894 173.0
YYD3_k127_4390605_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000005153 104.0
YYD3_k127_4390605_4 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000001373 102.0
YYD3_k127_4390605_5 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00005225 56.0
YYD3_k127_4390675_0 Tfp pilus assembly protein FimV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002032 378.0
YYD3_k127_4390675_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007364 272.0
YYD3_k127_4390675_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000001613 193.0
YYD3_k127_4398167_0 PFAM Maf family protein K06287 - - 0.0000000000000000000000000000000000000002699 161.0
YYD3_k127_4398167_1 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 0.000000000000812 81.0
YYD3_k127_4398167_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.00000000001201 67.0
YYD3_k127_4398167_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000001947 64.0
YYD3_k127_4399409_0 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 0.0 1049.0
YYD3_k127_4399409_1 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000000261 179.0
YYD3_k127_4399409_2 NmrA-like family - - - 0.000000000000000000000000000000000000000003248 157.0
YYD3_k127_4399409_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold K01046 - 3.1.1.3 0.0000000000000000000000000000000000000687 156.0
YYD3_k127_4408750_0 PFAM Cobyrinic acid ac-diamide synthase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 297.0
YYD3_k127_4408750_1 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000003381 131.0
YYD3_k127_4408750_2 ParB-like nuclease domain K03497 GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005694,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0060187,GO:0071944 - 0.000000000000000000000000000004194 123.0
YYD3_k127_4409120_0 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 413.0
YYD3_k127_4409120_1 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 411.0
YYD3_k127_4409120_2 unfolded protein binding K04083 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0031647,GO:0036506,GO:0042026,GO:0042802,GO:0043167,GO:0043169,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0065007,GO:0065008 - 0.0000000000000000000000000000000000000000000000000009012 210.0
YYD3_k127_441860_0 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000001774 124.0
YYD3_k127_441860_1 Cysteine desulfurase 1 K04487 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006790,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0017076,GO:0022607,GO:0030554,GO:0031071,GO:0031163,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.8.1.7 0.000000000000000000000000000002596 121.0
YYD3_k127_4425471_0 PFAM Glycosyl transferases group 1 K13057 - 2.4.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006881 464.0
YYD3_k127_4425471_1 glycosyl transferase family K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.0000000000000000000000000000000000000000000000005606 181.0
YYD3_k127_4425471_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000006824 171.0
YYD3_k127_4425471_3 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697,K16055 GO:0003674,GO:0003824,GO:0003825,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0030312,GO:0033554,GO:0034637,GO:0035251,GO:0040007,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046527,GO:0046872,GO:0046914,GO:0047260,GO:0050896,GO:0051716,GO:0070413,GO:0071704,GO:0071944,GO:1901576 2.4.1.15,2.4.1.347,3.1.3.12 0.0000000000000000000000008236 119.0
YYD3_k127_4443156_0 Peptidase M16 - - - 0.0 1081.0
YYD3_k127_4443156_1 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000003675 154.0
YYD3_k127_4443156_2 - - - - 0.0000004119 54.0
YYD3_k127_4471674_0 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 459.0
YYD3_k127_447856_0 COG1012 NAD-dependent aldehyde dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 533.0
YYD3_k127_447856_1 Enoyl-(Acyl carrier protein) reductase K15734 - 1.1.1.105 0.000000000000000000000000000000000000000000000000000000000000000000000000000006341 271.0
YYD3_k127_447856_2 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006827 273.0
YYD3_k127_447856_3 LPXTG-motif cell wall anchor domain - - - 0.00000000000000000000000000000000000000000000000000000000002104 213.0
YYD3_k127_447856_4 PFAM Glycosyl transferase, group 1 - - - 0.000000004458 65.0
YYD3_k127_4514385_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1942.0
YYD3_k127_4514385_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 5.679e-289 903.0
YYD3_k127_4514385_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 7.628e-202 636.0
YYD3_k127_4514385_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 341.0
YYD3_k127_4514385_4 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000001956 222.0
YYD3_k127_4514385_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000005932 221.0
YYD3_k127_4514385_6 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000000003818 99.0
YYD3_k127_4519422_0 ligase activity, forming nitrogen-metal bonds K02230 - 6.6.1.2 1.959e-302 938.0
YYD3_k127_4519422_1 AAA-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007594 567.0
YYD3_k127_4526715_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 362.0
YYD3_k127_4526715_1 Transmembrane secretion effector K08225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 342.0
YYD3_k127_4526715_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009831 315.0
YYD3_k127_4526715_3 translation initiation factor activity K12065,K13671 - - 0.000002652 56.0
YYD3_k127_4526715_4 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 - 4.3.3.6 0.000008864 48.0
YYD3_k127_4527744_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000003863 264.0
YYD3_k127_4527744_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000002849 229.0
YYD3_k127_4527744_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000131 224.0
YYD3_k127_4527744_3 PASTA K12132 - 2.7.11.1 0.0000000000000000002014 101.0
YYD3_k127_4527744_4 LemA family K03744 - - 0.0000000000001105 78.0
YYD3_k127_4592974_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 9.829e-215 677.0
YYD3_k127_4592974_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000009683 153.0
YYD3_k127_4603155_0 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity K00819,K00821 GO:0003674,GO:0003824,GO:0004587,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.6.1.11,2.6.1.13,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 576.0
YYD3_k127_4603155_1 Ammonium Transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009993 568.0
YYD3_k127_4603155_11 - - - - 0.000000003225 69.0
YYD3_k127_4603155_12 Bacterial antitoxin of type II TA system, VapB - - - 0.00001259 51.0
YYD3_k127_4603155_2 Belongs to the metallo-dependent hydrolases superfamily. HutI family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 369.0
YYD3_k127_4603155_3 Protein export membrane protein K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002916 288.0
YYD3_k127_4603155_4 PFAM Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009566 238.0
YYD3_k127_4603155_5 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000002691 235.0
YYD3_k127_4603155_6 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000005009 188.0
YYD3_k127_4603155_7 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00210,K00220,K00800 - 1.3.1.12,1.3.1.43,2.5.1.19 0.0000000000000000000000000000000000006632 141.0
YYD3_k127_4603155_8 nuclease activity - GO:0001666,GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016787,GO:0016788,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0034641,GO:0036293,GO:0040008,GO:0043170,GO:0043207,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0045926,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051701,GO:0051704,GO:0051707,GO:0060255,GO:0065007,GO:0070482,GO:0071704,GO:0075136,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360,GO:2000112,GO:2000113 - 0.00000000000000000000000007433 113.0
YYD3_k127_4603155_9 PFAM DivIVA family protein K04074 - - 0.000000000000000001596 96.0
YYD3_k127_4606157_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 309.0
YYD3_k127_4606157_1 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003019 282.0
YYD3_k127_4606157_2 Domain of unknown function (DUF4396) - - - 0.00000000000000000000000000000000000000000000000000000000000000008332 226.0
YYD3_k127_4606157_3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000005327 213.0
YYD3_k127_4606157_4 Belongs to the peptidase S11 family K07262 GO:0000003,GO:0000270,GO:0000910,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006022,GO:0006508,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0019954,GO:0022402,GO:0022414,GO:0030203,GO:0032505,GO:0042221,GO:0042493,GO:0042597,GO:0043093,GO:0043170,GO:0044238,GO:0044464,GO:0045229,GO:0050896,GO:0051301,GO:0070011,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901564 - 0.00000000000000000000000000000000000000000000000000005963 208.0
YYD3_k127_4606157_5 Protein of unknown function (DUF3617) - - - 0.0000000000000000000000001075 119.0
YYD3_k127_4606157_6 oxidoreductase activity K02396 - - 0.0000000000000001653 94.0
YYD3_k127_4606157_7 PKD domain - - - 0.00000001556 68.0
YYD3_k127_4616290_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 3.133e-320 1001.0
YYD3_k127_4616290_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008150,GO:0008152,GO:0009295,GO:0009330,GO:0009987,GO:0016043,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.99.1.3 9.85e-262 832.0
YYD3_k127_4616290_10 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000001504 113.0
YYD3_k127_4616290_11 Biotin-requiring enzyme - - - 0.00000000000000000002356 98.0
YYD3_k127_4616290_12 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000001898 68.0
YYD3_k127_4616290_13 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000001109 71.0
YYD3_k127_4616290_14 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000128 56.0
YYD3_k127_4616290_2 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 4.359e-244 763.0
YYD3_k127_4616290_3 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 539.0
YYD3_k127_4616290_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010556,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1990837,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 449.0
YYD3_k127_4616290_5 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002106 302.0
YYD3_k127_4616290_6 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000002042 258.0
YYD3_k127_4616290_7 Zn_pept K05996 - 3.4.17.18 0.00000000000000000000000000000000000000000000000000000000000001732 245.0
YYD3_k127_4616290_8 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000007727 186.0
YYD3_k127_4616290_9 Fibronectin type 3 domain - - - 0.000000000000000000000000000000000000000009488 178.0
YYD3_k127_4619984_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000002766 205.0
YYD3_k127_4619984_1 oxidoreductase activity - - - 0.000008704 58.0
YYD3_k127_4651080_0 PFAM Fibronectin type III domain - - - 0.0000000000000000000000000000000000000000000001006 196.0
YYD3_k127_4651080_1 Thrombospondin type 3 repeat - - - 0.0000449 58.0
YYD3_k127_4651080_2 Right handed beta helix region - - - 0.00007776 57.0
YYD3_k127_4660962_0 ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 369.0
YYD3_k127_4660962_1 esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000001458 232.0
YYD3_k127_4660962_2 pteridine-dependent deoxygenase K18240 - 4.1.3.40,4.1.3.45 0.00000000000000000000000000000000000000000000000001807 199.0
YYD3_k127_4676169_0 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.00000000000000000000000000001697 135.0
YYD3_k127_4676169_1 - - - - 0.00000000000000000000802 109.0
YYD3_k127_4676169_2 - - - - 0.000000007271 63.0
YYD3_k127_4679162_0 Cytochrome C assembly protein K02195 - - 0.00000000000000000000000000000000000005301 146.0
YYD3_k127_4679162_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.0000000000000000000000000000000993 134.0
YYD3_k127_467936_0 CobQ CobB MinD ParA nucleotide binding domain K08252,K13661,K16554,K16692 - 2.7.10.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007113 371.0
YYD3_k127_467936_1 Polysaccharide export protein K01991,K20988 - - 0.0000000000000000000000000000000000000000000000000000000000000000005926 239.0
YYD3_k127_4705225_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 301.0
YYD3_k127_4720123_0 DNA recombination K03631,K13582 GO:0000724,GO:0000725,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009295,GO:0009314,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0030312,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:1901360 - 0.00000000000000000002779 93.0
YYD3_k127_4720123_1 FlgD Ig-like domain K15924 - 3.2.1.136 0.0000000000000009571 92.0
YYD3_k127_4761080_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 6.628e-204 651.0
YYD3_k127_4761080_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 372.0
YYD3_k127_4761080_10 histone H2A K63-linked ubiquitination K10914 - - 0.000000000000000000000000000000000000000003296 165.0
YYD3_k127_4761080_11 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000009488 152.0
YYD3_k127_4761080_12 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.000000000000000000000000000000001494 132.0
YYD3_k127_4761080_13 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000005052 133.0
YYD3_k127_4761080_14 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000003505 70.0
YYD3_k127_4761080_15 Virulence factor BrkB K07058 - - 0.000000005865 67.0
YYD3_k127_4761080_2 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003597 277.0
YYD3_k127_4761080_3 GTP binding K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000995 270.0
YYD3_k127_4761080_4 Permease YjgP YjgQ family protein K07091,K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003552 274.0
YYD3_k127_4761080_5 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000001659 243.0
YYD3_k127_4761080_6 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000000000000003244 227.0
YYD3_k127_4761080_7 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000003468 198.0
YYD3_k127_4761080_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000006658 186.0
YYD3_k127_4761080_9 PFAM histidine triad (HIT) protein K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000003962 175.0
YYD3_k127_4765923_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009697 576.0
YYD3_k127_4765923_1 Phosphohydrolase-associated domain K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 398.0
YYD3_k127_4765923_2 Beta-eliminating lyase K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000001696 172.0
YYD3_k127_4765923_3 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000001968 129.0
YYD3_k127_4765923_4 peptidyl-tyrosine sulfation - - - 0.0000000000000009501 83.0
YYD3_k127_4765923_5 cheY-homologous receiver domain K02490 - - 0.000000000000393 83.0
YYD3_k127_4778129_0 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000005512 217.0
YYD3_k127_4778129_1 - - - - 0.000000000000000000000000000000000001525 158.0
YYD3_k127_4823060_0 Belongs to the sigma-70 factor family K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 544.0
YYD3_k127_4823060_1 PFAM DGPFAETKE family protein - - - 0.000000000000000000000000000000000000000000000000000004053 193.0
YYD3_k127_4823060_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000001745 140.0
YYD3_k127_4823060_5 PFAM Stage II sporulation E family protein - - - 0.0000000003247 70.0
YYD3_k127_4823060_6 helix_turn_helix, Lux Regulon - - - 0.00000001089 66.0
YYD3_k127_4827638_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 1.501e-226 717.0
YYD3_k127_4827638_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004265 488.0
YYD3_k127_4827638_2 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006954 420.0
YYD3_k127_4827638_3 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 405.0
YYD3_k127_4827638_4 Pyridine nucleotide-disulphide oxidoreductase K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004496 384.0
YYD3_k127_4827638_5 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001827 292.0
YYD3_k127_4827638_6 FAD binding domain K21401 - 1.3.99.38 0.0000000000000000000000000000000000000000000000000101 194.0
YYD3_k127_4827638_7 adenosine deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000000001761 153.0
YYD3_k127_4827638_8 cheY-homologous receiver domain - - - 0.000000000000000000000000000000002876 134.0
YYD3_k127_483839_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 8.287e-259 813.0
YYD3_k127_483839_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000007369 263.0
YYD3_k127_483839_2 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000004627 142.0
YYD3_k127_483839_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000006823 71.0
YYD3_k127_4871655_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 320.0
YYD3_k127_4871655_1 PFAM transcriptional regulator domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004786 276.0
YYD3_k127_4871655_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000006884 233.0
YYD3_k127_4871655_3 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000000000000000002124 215.0
YYD3_k127_4871655_4 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000000000008392 148.0
YYD3_k127_4871655_5 PFAM transcriptional regulator domain protein - - - 0.00000000000000000000000000000000000003636 148.0
YYD3_k127_4871655_6 Carboxypeptidase regulatory-like domain K02014 - - 0.000000000000000000002244 104.0
YYD3_k127_4871655_7 PFAM transcriptional regulator domain protein - - - 0.0000000000000005404 82.0
YYD3_k127_4880247_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 351.0
YYD3_k127_4880247_1 Flavin containing amine oxidoreductase K00231,K01854 - 1.3.3.15,1.3.3.4,5.4.99.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 339.0
YYD3_k127_4880247_2 phospho-N-acetylmuramoyl-pentapeptide-transferase activity K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 323.0
YYD3_k127_4880247_3 methyltransferase - - - 0.00000000000000000000000000000000000000000000000009831 187.0
YYD3_k127_4880247_4 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000009729 164.0
YYD3_k127_4880247_5 Asparagine synthase K01953 - 6.3.5.4 0.000000002124 62.0
YYD3_k127_4883985_0 ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000003411 200.0
YYD3_k127_4883985_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000112 178.0
YYD3_k127_4883985_2 Psort location CytoplasmicMembrane, score - - - 0.00000000000005371 86.0
YYD3_k127_4891518_0 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 504.0
YYD3_k127_4891518_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002406 274.0
YYD3_k127_4891518_2 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007601 258.0
YYD3_k127_4891518_3 - - - - 0.00000000000000000000000000000000000000001948 165.0
YYD3_k127_4891518_4 response regulator K07684 - - 0.00000000000000004151 90.0
YYD3_k127_4893086_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 526.0
YYD3_k127_4893086_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 - 2.3.1.29,2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 329.0
YYD3_k127_4893086_2 May be involved in the biosynthesis of molybdopterin K03638,K03831 - 2.7.7.75 0.00000000000000000000000000000000000000000007545 182.0
YYD3_k127_4893086_3 Protein of unknown function (DUF3467) - - - 0.00000000000000000002646 93.0
YYD3_k127_4893086_4 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000003906 80.0
YYD3_k127_4896543_0 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 309.0
YYD3_k127_4896543_1 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000002368 203.0
YYD3_k127_4896543_2 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.00000000000000000000000000000000000000000000006302 176.0
YYD3_k127_4896543_3 Exonuclease - - - 0.00000000000000000000000000000007268 141.0
YYD3_k127_4896543_4 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0001746 54.0
YYD3_k127_4919495_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 4.033e-315 994.0
YYD3_k127_4919495_1 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516 387.0
YYD3_k127_4919495_10 Glycosyltransferase family 87 - - - 0.0005513 51.0
YYD3_k127_4919495_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008019 327.0
YYD3_k127_4919495_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 296.0
YYD3_k127_4919495_4 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001183 272.0
YYD3_k127_4919495_5 Oxidoreductase FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003376 258.0
YYD3_k127_4919495_6 transferase activity, transferring acyl groups K03824 - - 0.000000000000000000000000000005237 126.0
YYD3_k127_4919495_7 Cupin domain - - - 0.000000000000000000000000006042 115.0
YYD3_k127_4919495_8 - - - - 0.0000000000000000000000009975 109.0
YYD3_k127_4919495_9 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000005579 97.0
YYD3_k127_492444_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.0 1216.0
YYD3_k127_492444_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000545 396.0
YYD3_k127_492444_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 358.0
YYD3_k127_492444_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000001635 274.0
YYD3_k127_492444_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000173 156.0
YYD3_k127_492444_5 PFAM Cytochrome c assembly protein - - - 0.0000000000000000000000000000000009371 145.0
YYD3_k127_492444_6 XdhC and CoxI family K07402 - - 0.0000000000000000000000000000003986 128.0
YYD3_k127_492444_7 uroporphyrinogen-III synthase activity K01719,K01749,K02496,K13542,K13543 GO:0003674,GO:0003824,GO:0004852,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.107,2.5.1.61,4.2.1.75 0.0000000000000000000006369 111.0
YYD3_k127_492444_8 SLBB domain K02237 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000003866 79.0
YYD3_k127_492444_9 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K09181 - - 0.000000389 53.0
YYD3_k127_4967465_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 384.0
YYD3_k127_4967465_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K03407 - 2.7.13.3 0.00000000000000000007705 98.0
YYD3_k127_4967465_2 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.000000146 55.0
YYD3_k127_5006543_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004508 355.0
YYD3_k127_5006543_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000002241 202.0
YYD3_k127_5006543_2 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.0000000000000000000007112 97.0
YYD3_k127_5006543_3 Acid phosphatase homologues - - - 0.0002039 47.0
YYD3_k127_5020268_0 Amp-dependent synthetase and ligase K00797,K01897 - 2.5.1.16,6.2.1.3 0.0 1142.0
YYD3_k127_5020268_1 Belongs to the bacterial plant glucose-1-phosphate adenylyltransferase family K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000002515 226.0
YYD3_k127_5020268_2 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000007496 96.0
YYD3_k127_5020268_3 zinc metalloprotease whose natural substrate is K06974 GO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:0140096,GO:1901564 - 0.00000000001743 72.0
YYD3_k127_5044983_0 COG2067 Long-chain fatty acid transport protein K06076 - - 0.00000005789 64.0
YYD3_k127_5044983_1 lyase activity - - - 0.000003649 57.0
YYD3_k127_5044983_2 CHAT domain - - - 0.0003227 52.0
YYD3_k127_5066569_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000003418 83.0
YYD3_k127_5066569_1 Thrombospondin type 3 repeat - - - 0.0000000000003795 84.0
YYD3_k127_5082599_0 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 312.0
YYD3_k127_5082599_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 298.0
YYD3_k127_5082599_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000007175 160.0
YYD3_k127_5082599_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000002158 119.0
YYD3_k127_5082599_5 OmpW family - - - 0.0008873 51.0
YYD3_k127_5112757_0 arylsulfatase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001353 279.0
YYD3_k127_5112757_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000007185 84.0
YYD3_k127_5112757_2 - - - - 0.000004461 59.0
YYD3_k127_5142138_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 8.809e-228 718.0
YYD3_k127_5142138_1 Thrombospondin type 3 repeat - - - 0.0006244 52.0
YYD3_k127_5143870_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 402.0
YYD3_k127_5143870_1 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000008777 123.0
YYD3_k127_5143870_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000001467 65.0
YYD3_k127_5173820_0 PFAM natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 318.0
YYD3_k127_5173820_1 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000007429 269.0
YYD3_k127_5173820_2 MgtE intracellular N domain - - - 0.00000000000000000000000000000000000000000000000000000000000001757 238.0
YYD3_k127_5184770_0 - - - - 0.00000000000000000000000000000000001719 145.0
YYD3_k127_5184770_1 SMART Integrin alpha beta-propellor repeat protein - - - 0.0000000000000000000000003224 117.0
YYD3_k127_5184770_2 - - - - 0.000000000000000000001432 98.0
YYD3_k127_5194693_0 Large extracellular alpha-helical protein K02172,K06196 - - 0.000001162 61.0
YYD3_k127_5194693_1 - - - - 0.0003144 53.0
YYD3_k127_5194693_2 Nad-dependent epimerase dehydratase - - - 0.0004585 44.0
YYD3_k127_5197006_0 ATPase associated with various cellular activities, AAA_5 K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006806 471.0
YYD3_k127_5197006_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000169 105.0
YYD3_k127_5197006_2 - - - - 0.00000005012 58.0
YYD3_k127_5205_0 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000001576 252.0
YYD3_k127_5230044_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1137.0
YYD3_k127_5230044_1 L-aspartate oxidase K00278 - 1.4.3.16 2.528e-218 695.0
YYD3_k127_5230044_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 499.0
YYD3_k127_5230044_3 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 499.0
YYD3_k127_5230044_4 Protein of unknown function (DUF3298) - - - 0.0000000000000000059 94.0
YYD3_k127_5230044_5 amidohydrolase - - - 0.00005022 57.0
YYD3_k127_525649_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000098,GO:0000166,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009087,GO:0009116,GO:0009119,GO:0009987,GO:0016020,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0019899,GO:0022610,GO:0030260,GO:0030312,GO:0033353,GO:0034641,GO:0035375,GO:0035635,GO:0036094,GO:0040007,GO:0042278,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044650,GO:0046085,GO:0046128,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048037,GO:0050662,GO:0051186,GO:0051287,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0055086,GO:0070403,GO:0071704,GO:0071944,GO:0072521,GO:0097159,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901657 3.3.1.1 2.502e-217 685.0
YYD3_k127_525649_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 293.0
YYD3_k127_525649_2 SusD family K21572 - - 0.000000000000000008422 89.0
YYD3_k127_525649_3 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000006291 61.0
YYD3_k127_525649_4 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04691,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0033554,GO:0035966,GO:0035967,GO:0042221,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0051788,GO:0070011,GO:0070887,GO:0071218,GO:0071310,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564 - 0.00000003655 62.0
YYD3_k127_525649_5 Multicopper oxidase K04753 - - 0.0001569 55.0
YYD3_k127_525649_6 Tetratricopeptide TPR_2 repeat protein - - - 0.0008648 52.0
YYD3_k127_526252_0 PFAM Sodium sulphate symporter K14445 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 486.0
YYD3_k127_526252_1 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 435.0
YYD3_k127_526252_2 Glutathione S-transferase, C-terminal domain K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002826 254.0
YYD3_k127_526252_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000001034 140.0
YYD3_k127_526252_4 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000000000000000000000000001353 132.0
YYD3_k127_526252_5 - - - - 0.000000000000000000003757 104.0
YYD3_k127_526252_6 - - - - 0.00000000000000000302 85.0
YYD3_k127_526252_7 ASPIC and UnbV - - - 0.000004509 59.0
YYD3_k127_526252_8 cellulose binding K07279 - - 0.00007004 55.0
YYD3_k127_526624_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000002256 81.0
YYD3_k127_526624_1 Belongs to the peptidase S8 family - - - 0.0000000000001472 84.0
YYD3_k127_526624_2 Kelch motif - - - 0.000001085 62.0
YYD3_k127_5287309_0 PFAM glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 398.0
YYD3_k127_5287309_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 377.0
YYD3_k127_5287309_2 7TM-HD extracellular K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 342.0
YYD3_k127_5287309_3 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - 0.0000000000000000000000000000000000000000000000000000000000000005995 245.0
YYD3_k127_5287309_4 PFAM CBS domain containing protein K06189 - - 0.00000000000000000000000000000000000000000000000000001838 210.0
YYD3_k127_5287309_5 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000002782 125.0
YYD3_k127_5287309_6 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000003932 106.0
YYD3_k127_5371114_0 Transcriptional regulator - - - 0.000000001282 71.0
YYD3_k127_5376639_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 548.0
YYD3_k127_5376639_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000001868 148.0
YYD3_k127_5376639_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000001184 95.0
YYD3_k127_5376639_3 Cytochrome C biogenesis protein K02200 - - 0.0000000001441 75.0
YYD3_k127_5387909_0 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 625.0
YYD3_k127_5387909_1 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 417.0
YYD3_k127_5387909_10 SdrD B-like domain - - - 0.00001782 59.0
YYD3_k127_5387909_2 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 322.0
YYD3_k127_5387909_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 308.0
YYD3_k127_5387909_4 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 305.0
YYD3_k127_5387909_5 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000183 278.0
YYD3_k127_5387909_6 HD domain - - - 0.000000000000000000000000000001632 134.0
YYD3_k127_5387909_7 Alpha beta hydrolase K07019 - - 0.00000000000000001875 86.0
YYD3_k127_5387909_8 - - - - 0.00000000000001125 84.0
YYD3_k127_5387909_9 - - - - 0.000000000008047 77.0
YYD3_k127_5401829_0 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001197 295.0
YYD3_k127_5401829_1 PFAM fumarylacetoacetate (FAA) hydrolase K16165 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0008948,GO:0016787,GO:0016822,GO:0016823,GO:0016829,GO:0016830,GO:0016831,GO:0018773,GO:0031974,GO:0031981,GO:0034545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013 3.7.1.20 0.000000000000000000000000000000000000000000000000000000007385 217.0
YYD3_k127_5401829_2 RNA recognition motif - - - 0.0000000000000000000000000004175 119.0
YYD3_k127_5437366_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008943 337.0
YYD3_k127_5437366_1 Nucleotidyl transferase K00966 - 2.7.7.13 0.000000000000000000000000000000000001741 152.0
YYD3_k127_5437366_2 CYTH K05873 - 4.6.1.1 0.000000000000000008971 97.0
YYD3_k127_5437366_3 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.0000000000001637 74.0
YYD3_k127_5437366_4 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.000000001217 69.0
YYD3_k127_5463558_0 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 319.0
YYD3_k127_5463558_1 PFAM YbaK prolyl-tRNA synthetase associated region K19055 - - 0.000000000000000000000000000000000000005151 150.0
YYD3_k127_5463558_2 ribosomal large subunit export from nucleus - - - 0.00000000000000000000000000000000007283 140.0
YYD3_k127_5463558_3 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000008889 100.0
YYD3_k127_5466823_0 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001476 246.0
YYD3_k127_5466823_1 Haem-binding domain - - - 0.00000000000000000000000000000000000000000003021 179.0
YYD3_k127_5466823_2 cellulase activity - - - 0.000000000000285 81.0
YYD3_k127_5467040_0 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 454.0
YYD3_k127_5467040_1 Family of unknown function (DUF1028) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 336.0
YYD3_k127_5467040_2 transmembrane transport K02035,K15580 - - 0.000000000000000000000000000000000000000000000000000000000002041 227.0
YYD3_k127_5467040_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0031224,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000005268 165.0
YYD3_k127_5467040_4 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000000000000000007794 108.0
YYD3_k127_5467040_5 Penicillin amidase K01434 - 3.5.1.11 0.000000000002227 79.0
YYD3_k127_5472114_0 Domain of unknown function (DUF4162) K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077 302.0
YYD3_k127_5472114_1 - - - - 0.00000000000000000000000000004626 125.0
YYD3_k127_5472114_2 ABC-2 family transporter protein K01992 - - 0.000000001735 65.0
YYD3_k127_5472116_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000006701 226.0
YYD3_k127_5472116_1 aminopeptidase activity K19689 - - 0.0000000000000000000000000000000000000000000000000000001505 208.0
YYD3_k127_54781_0 Sulfate permease and related transporters (MFS superfamily) - - - 4.003e-221 701.0
YYD3_k127_54781_1 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 356.0
YYD3_k127_54781_2 Protein involved in meta-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000000002198 249.0
YYD3_k127_54781_3 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000001784 223.0
YYD3_k127_54781_4 - - - - 0.00000000000000000000000000000000000000005945 167.0
YYD3_k127_54781_5 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000002264 145.0
YYD3_k127_5501122_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K07306,K17050 - 1.7.5.1,1.8.5.3 0.0 1353.0
YYD3_k127_5501122_1 PFAM Cytochrome b b6 domain - - - 3.051e-202 654.0
YYD3_k127_5501122_10 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.000000000000000000000000000006194 136.0
YYD3_k127_5501122_11 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000001401 91.0
YYD3_k127_5501122_12 chaperone-mediated protein complex assembly - - - 0.0000000002789 73.0
YYD3_k127_5501122_13 Ethylbenzene dehydrogenase - - - 0.00003808 57.0
YYD3_k127_5501122_2 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 644.0
YYD3_k127_5501122_3 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 528.0
YYD3_k127_5501122_4 creatininase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000002939 269.0
YYD3_k127_5501122_5 - - - - 0.000000000000000000000000000000000000000000000000000008914 194.0
YYD3_k127_5501122_6 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000005675 187.0
YYD3_k127_5501122_7 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000005769 141.0
YYD3_k127_5501122_8 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000001509 154.0
YYD3_k127_5501122_9 DoxX K15977 - - 0.00000000000000000000000000000339 130.0
YYD3_k127_5523565_0 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 413.0
YYD3_k127_5523565_1 Dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 417.0
YYD3_k127_5523565_10 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000289 165.0
YYD3_k127_5523565_11 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.000000000000000000000000000000000004556 142.0
YYD3_k127_5523565_12 Ribosomal protein L9, N-terminal domain K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000005189 136.0
YYD3_k127_5523565_13 repeat-containing protein - - - 0.000000000000000000000000000000003262 147.0
YYD3_k127_5523565_14 Could be involved in septation K06412 - - 0.000000000000000000000000001612 119.0
YYD3_k127_5523565_15 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000005776 96.0
YYD3_k127_5523565_16 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000002885 92.0
YYD3_k127_5523565_17 Transcriptional regulator - - - 0.00000000000000919 79.0
YYD3_k127_5523565_18 - - - - 0.0006382 49.0
YYD3_k127_5523565_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 409.0
YYD3_k127_5523565_3 Domain of unknown function (DUF1929) K04618 - 1.1.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 415.0
YYD3_k127_5523565_4 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000998 351.0
YYD3_k127_5523565_5 peptidyl-lysine modification to peptidyl-hypusine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000328 323.0
YYD3_k127_5523565_6 - K07039 - - 0.000000000000000000000000000000000000000000000000000000000000000000005363 252.0
YYD3_k127_5523565_7 PFAM glycosyl transferase family 9 K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000009957 246.0
YYD3_k127_5523565_8 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000002095 184.0
YYD3_k127_5523565_9 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000001327 162.0
YYD3_k127_5543615_0 rhs element vgr protein K11904 - - 3.164e-221 707.0
YYD3_k127_5543615_1 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001583 262.0
YYD3_k127_5543615_2 Type VI secretion system, VipA, VC_A0107 or Hcp2 - - - 0.0000000000000000000000000000000000000000000000000000000000000001058 243.0
YYD3_k127_5543615_3 Domain of unknown function (DUF4150) - - - 0.00000000000000000000000000000000000000000000000000000000004089 228.0
YYD3_k127_5543615_4 synthase K00647 - 2.3.1.41 0.0000000000000000000000000000000000000000000000000002687 202.0
YYD3_k127_5543615_7 - - - - 0.0000000000000000002179 93.0
YYD3_k127_5543615_8 lyase activity - - - 0.00007967 53.0
YYD3_k127_559241_0 NAD binding K00333,K05579,K13378 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 401.0
YYD3_k127_559241_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000002117 220.0
YYD3_k127_559241_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00332 - 1.6.5.3 0.000000000000000000000003018 111.0
YYD3_k127_559241_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000001215 98.0
YYD3_k127_559241_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000009035 104.0
YYD3_k127_5611172_0 von Willebrand factor type A domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 534.0
YYD3_k127_5611172_1 Histidine kinase K07641,K07711 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0031667,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 348.0
YYD3_k127_5611172_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001712 264.0
YYD3_k127_5611172_3 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000003334 284.0
YYD3_k127_5611172_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002154 256.0
YYD3_k127_5611172_5 KR domain - - - 0.000000000000000000000000000000000000000002082 159.0
YYD3_k127_5641083_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 466.0
YYD3_k127_5641083_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 393.0
YYD3_k127_5641083_2 Domains HisKA, HATPase_c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001708 259.0
YYD3_k127_5641083_3 response regulator K02481,K07715 - - 0.00000000000000000000000000000000000905 154.0
YYD3_k127_564838_1 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.00001436 59.0
YYD3_k127_5652663_0 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 6.159e-231 738.0
YYD3_k127_5652663_1 ImpE protein K11898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 317.0
YYD3_k127_5652663_2 Pfam:T6SS_VasB K11895 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002707 291.0
YYD3_k127_5652663_3 Gene 25-like lysozyme K11897 - - 0.0000000000000000000000000000000000000005744 162.0
YYD3_k127_5670907_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004269 379.0
YYD3_k127_5670907_1 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 348.0
YYD3_k127_5670907_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001589 284.0
YYD3_k127_5670907_3 Tetratricopeptide repeat - - - 0.0000000000000005264 84.0
YYD3_k127_5677859_0 PFAM Aldo keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 340.0
YYD3_k127_5677859_1 NUDIX domain - - - 0.0000000000000000000000000000000000000000107 161.0
YYD3_k127_5677859_2 - - - - 0.0000003988 56.0
YYD3_k127_5696012_0 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 473.0
YYD3_k127_5696012_1 two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 464.0
YYD3_k127_5696012_2 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006008 291.0
YYD3_k127_5696012_3 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000003956 119.0
YYD3_k127_5752400_0 selenocysteine lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000002631 246.0
YYD3_k127_5752400_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000009167 145.0
YYD3_k127_5755499_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 518.0
YYD3_k127_5755499_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 353.0
YYD3_k127_5759156_0 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000001305 244.0
YYD3_k127_5759156_1 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464 4.1.1.31 0.000000000000000000000000000000000000000000000000001017 185.0
YYD3_k127_5759156_2 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000003004 187.0
YYD3_k127_5759156_3 lytic transglycosylase activity - - - 0.00000000000002434 85.0
YYD3_k127_5760043_0 ATPase associated with various cellular activities, AAA_5 K02584 - - 1.028e-282 883.0
YYD3_k127_5760043_1 OsmC-like protein - - - 0.0000000000000000000000000000000000000131 147.0
YYD3_k127_5769911_0 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006219 267.0
YYD3_k127_5769911_1 COGs COG1748 Saccharopine dehydrogenase and related protein - - - 0.000000000000000000000000000000000000000000007889 179.0
YYD3_k127_5769911_2 FG-GAP repeat protein - - - 0.000000000000000000000000239 124.0
YYD3_k127_5779098_0 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003821 252.0
YYD3_k127_5779098_1 MarR family - - - 0.000000000000000000000000000000004346 130.0
YYD3_k127_5779098_2 COG4206 Outer membrane cobalamin receptor protein K16092 - - 0.00000000000000001043 92.0
YYD3_k127_581092_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K14126 - 1.8.98.5 0.00000000000000000000000000000000000000000000000000000003551 222.0
YYD3_k127_581092_1 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.00000000000000000000000000000000001602 151.0
YYD3_k127_581092_2 denitrification pathway - - - 0.0000000000000000000000000000000003801 145.0
YYD3_k127_581092_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000003299 82.0
YYD3_k127_5818979_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.834e-240 753.0
YYD3_k127_5818979_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 376.0
YYD3_k127_5818979_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0043953,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.0000000000000000000000000000000000000000000000000001135 196.0
YYD3_k127_5818979_3 PFAM glycosyl transferase family 9 K02841 - - 0.0000000000000000000000000000000000000002918 163.0
YYD3_k127_5818979_4 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 0.00000000000000000000000000000000000001277 165.0
YYD3_k127_5818979_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000003604 141.0
YYD3_k127_5818979_6 - - - - 0.000000000000000000000000000000000364 143.0
YYD3_k127_5818979_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03116,K03117 - - 0.0000000006744 73.0
YYD3_k127_5818979_8 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.00000004623 66.0
YYD3_k127_5818979_9 TPR repeat - - - 0.0000009398 60.0
YYD3_k127_5839797_0 Carbamoyl-phosphate synthetase large chain domain protein K01955 - 6.3.5.5 0.0 1144.0
YYD3_k127_5839797_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 604.0
YYD3_k127_5839797_10 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000003205 201.0
YYD3_k127_5839797_11 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000004567 192.0
YYD3_k127_5839797_12 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000001542 177.0
YYD3_k127_5839797_13 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000002741 172.0
YYD3_k127_5839797_14 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000008496 182.0
YYD3_k127_5839797_15 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000002351 157.0
YYD3_k127_5839797_16 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000004447 140.0
YYD3_k127_5839797_17 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000046 134.0
YYD3_k127_5839797_18 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000002816 139.0
YYD3_k127_5839797_19 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000001096 118.0
YYD3_k127_5839797_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 450.0
YYD3_k127_5839797_20 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000002483 94.0
YYD3_k127_5839797_21 Belongs to the bacterial ribosomal protein bL36 family K02919 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000003433 69.0
YYD3_k127_5839797_22 Ribosomal protein L30p/L7e K02907 - - 0.0000000001426 70.0
YYD3_k127_5839797_23 D,d-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000002018 53.0
YYD3_k127_5839797_3 Carbamoyl-phosphate synthetase ammonia chain K01955 GO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007656 345.0
YYD3_k127_5839797_4 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005649 299.0
YYD3_k127_5839797_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007062 286.0
YYD3_k127_5839797_6 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001174 264.0
YYD3_k127_5839797_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000721 234.0
YYD3_k127_5839797_8 Phosphomethylpyrimidine kinase K03272 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000002863 231.0
YYD3_k127_5839797_9 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000009764 217.0
YYD3_k127_5844549_0 Domain of unknown function (DUF4268) - - - 0.000000000000000000000000000000000000000000000000006673 194.0
YYD3_k127_5844549_1 RES - - - 0.0000000000000000000000000000000000000000001431 166.0
YYD3_k127_5844549_2 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000004665 158.0
YYD3_k127_5844549_3 Helix-turn-helix domain - - - 0.000294 53.0
YYD3_k127_5850802_0 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009307 505.0
YYD3_k127_5850802_1 lipolytic protein G-D-S-L family K05970 - 3.1.1.53 0.00000000000000000000000000000000000006132 161.0
YYD3_k127_5850802_2 TonB-dependent receptor K02014,K16087 - - 0.000000000000005554 88.0
YYD3_k127_5852736_0 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 385.0
YYD3_k127_5852736_1 Flavin containing amine oxidoreductase K06955 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 308.0
YYD3_k127_5852736_2 TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000008363 207.0
YYD3_k127_5852736_3 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding K01647,K22491 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000006737 206.0
YYD3_k127_5852736_4 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000004806 182.0
YYD3_k127_5852736_5 Helix-turn-helix domain - - - 0.0000000000000000000000000000000008135 139.0
YYD3_k127_5868502_0 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000001887 170.0
YYD3_k127_5868502_1 domain, Protein - - - 0.00000000000000000000000000000000000000000001941 183.0
YYD3_k127_5868502_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000002885 56.0
YYD3_k127_5869698_0 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000000003039 253.0
YYD3_k127_5869698_1 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000004248 198.0
YYD3_k127_5869698_2 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000001983 93.0
YYD3_k127_5869698_3 O-Antigen ligase K02847 - - 0.0000000000009465 82.0
YYD3_k127_5869698_4 - - - - 0.00000000003031 76.0
YYD3_k127_5881599_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000005561 137.0
YYD3_k127_5881599_1 cell adhesion involved in biofilm formation - - - 0.000000001307 72.0
YYD3_k127_5881599_2 His Kinase A (phosphoacceptor) domain - - - 0.0001466 52.0
YYD3_k127_5885384_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 4.549e-249 782.0
YYD3_k127_5885384_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 461.0
YYD3_k127_5885384_2 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950,K13940 - 2.7.6.3,4.1.2.25 0.000002566 51.0
YYD3_k127_5885384_3 COG0457 FOG TPR repeat - - - 0.00002031 55.0
YYD3_k127_5886441_0 Belongs to the UPF0219 family K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 432.0
YYD3_k127_5886441_1 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000000000000002779 151.0
YYD3_k127_5886441_2 PFAM Transposase IS200 like - - - 0.000000000000000000000000000000003224 140.0
YYD3_k127_5886441_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000004665 109.0
YYD3_k127_5886441_4 - - - - 0.000000001216 69.0
YYD3_k127_5902388_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009380,GO:0009381,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 427.0
YYD3_k127_5902388_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 421.0
YYD3_k127_5902388_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 311.0
YYD3_k127_5902388_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000003831 161.0
YYD3_k127_5902388_4 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000128 132.0
YYD3_k127_5902388_5 - - - - 0.00000000000001435 87.0
YYD3_k127_5923719_0 Cytochrome C assembly protein - - - 4.011e-249 792.0
YYD3_k127_5923719_1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 0.000000000000008413 81.0
YYD3_k127_5923748_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000147 205.0
YYD3_k127_5923748_1 RNA polymerase recycling family C-terminal K03580 - - 0.00000000000003866 79.0
YYD3_k127_5923748_2 response to abiotic stimulus K06867 - - 0.0001171 52.0
YYD3_k127_5929607_0 PFAM alpha-2-macroglobulin domain protein K06894 - - 1.74e-233 752.0
YYD3_k127_5972736_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000038 252.0
YYD3_k127_5972736_1 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000121 138.0
YYD3_k127_5972736_2 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000002282 105.0
YYD3_k127_598359_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007299 458.0
YYD3_k127_598359_1 PFAM Thiolase K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000003721 240.0
YYD3_k127_598359_2 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000008071 190.0
YYD3_k127_598359_3 Multicopper oxidase K04753 - - 0.000000000000000000000000000000000000000002228 170.0
YYD3_k127_598359_4 TPM domain K06872 - - 0.00000000000000000000000000000000002992 152.0
YYD3_k127_598359_5 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000002037 128.0
YYD3_k127_598359_6 Membrane K08988 - - 0.0000000000000000000000000007788 130.0
YYD3_k127_598359_8 Phosphate acyltransferases K13507 - 2.3.1.15,2.3.1.42 0.0000002343 60.0
YYD3_k127_5988465_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008716 539.0
YYD3_k127_5988465_1 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 396.0
YYD3_k127_5988465_2 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000002366 223.0
YYD3_k127_5988465_3 - - - - 0.00000000000000000000000000000000000000000001916 173.0
YYD3_k127_5988465_4 Acetyltransferase (isoleucine patch K00661 - 2.3.1.79 0.0000000000000000000000000007449 120.0
YYD3_k127_5996446_0 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001211 247.0
YYD3_k127_5996446_1 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000000000000000006776 130.0
YYD3_k127_5996446_2 Beta-eliminating lyase - - - 0.00000000000000000000000007797 108.0
YYD3_k127_6023299_0 Protein of unknown function (DUF3604) - - - 0.0 1023.0
YYD3_k127_6023299_1 Protein of unknown function (DUF3604) - - - 8.455e-247 778.0
YYD3_k127_6023299_2 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000001133 219.0
YYD3_k127_6023299_3 - - - - 0.00000000000000000000000000005597 117.0
YYD3_k127_6023299_4 HupE / UreJ protein - - - 0.000000006455 67.0
YYD3_k127_6037601_0 GAD domain K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 467.0
YYD3_k127_6037601_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 413.0
YYD3_k127_6037601_2 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 415.0
YYD3_k127_6037601_3 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005966 339.0
YYD3_k127_6037888_0 peptidase S9 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053 537.0
YYD3_k127_6037888_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 410.0
YYD3_k127_6037888_2 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007647 341.0
YYD3_k127_6037888_3 AAA domain (Cdc48 subfamily) K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007546 290.0
YYD3_k127_6045807_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 425.0
YYD3_k127_6052728_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000001028 244.0
YYD3_k127_6052728_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K20444 - - 0.000000000000000000000000000000000000002406 165.0
YYD3_k127_6052728_2 Bacterial antitoxin of type II TA system, VapB - - - 0.00000000000000000002356 96.0
YYD3_k127_6052728_3 PFAM Glycosyl transferase, group 1 - - - 0.0000003597 53.0
YYD3_k127_6059339_0 DNA RNA helicase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 405.0
YYD3_k127_6059339_1 FAD dependent oxidoreductase K00303 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 301.0
YYD3_k127_6059339_2 Belongs to the DapA family K01714,K22397 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005975,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019520,GO:0019752,GO:0032787,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046176,GO:0046395,GO:0047440,GO:0071704,GO:0072329,GO:1901575 4.1.2.28,4.3.3.7 0.000000000000000000000000000000000000000000000000000000009452 216.0
YYD3_k127_6072765_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 GO:0000166,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008144,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0017076,GO:0030554,GO:0032153,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 467.0
YYD3_k127_6072765_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 403.0
YYD3_k127_6072765_2 Belongs to the MurCDEF family K01924 GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000001882 258.0
YYD3_k127_6072765_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001807 258.0
YYD3_k127_6072765_4 Carbon-nitrogen hydrolase K03820 - - 0.000000000000000000000000000000000000004854 164.0
YYD3_k127_6072765_5 creatininase K01470 - 3.5.2.10 0.000000000000000000000000000000000000005629 162.0
YYD3_k127_6072765_6 Cell division protein FtsQ K03589 - - 0.000000000001533 80.0
YYD3_k127_6086380_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 382.0
YYD3_k127_6086380_1 ADP-ribosylation factor family K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 286.0
YYD3_k127_6086380_10 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000008184 103.0
YYD3_k127_6086380_11 Recombinase zinc beta ribbon domain K06400 - - 0.000000000807 66.0
YYD3_k127_6086380_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002934 255.0
YYD3_k127_6086380_3 RecR protein K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005329 243.0
YYD3_k127_6086380_4 Roadblock/LC7 domain - - - 0.00000000000000000000000000000000000000000000001044 186.0
YYD3_k127_6086380_5 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000000000000000000004775 163.0
YYD3_k127_6086380_6 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000001818 149.0
YYD3_k127_6086380_7 Helix-turn-helix domain - - - 0.000000000000000000000000000000000008656 151.0
YYD3_k127_6086380_8 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000004609 129.0
YYD3_k127_6086380_9 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000009588 121.0
YYD3_k127_6094039_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 290.0
YYD3_k127_6094039_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000004014 287.0
YYD3_k127_6094039_10 Phosphoesterase family - - - 0.00009819 55.0
YYD3_k127_6094039_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001682 251.0
YYD3_k127_6094039_3 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000053 210.0
YYD3_k127_6094039_4 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000001446 192.0
YYD3_k127_6094039_5 HicA toxin of bacterial toxin-antitoxin, - - - 0.000000000000000000000002002 104.0
YYD3_k127_6094039_6 Sporulation and spore germination - - - 0.00000000000000007083 90.0
YYD3_k127_6094039_7 PFAM Uncharacterised protein family UPF0150 - - - 0.0000000000000004418 81.0
YYD3_k127_6094039_8 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000003557 59.0
YYD3_k127_6094039_9 PFAM Integrase catalytic region K07497 - - 0.000006421 59.0
YYD3_k127_6114279_0 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 424.0
YYD3_k127_6114279_1 Protein of unknown function (DUF3300) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005184 381.0
YYD3_k127_6114279_2 Protein of unknown function (DUF2950) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 358.0
YYD3_k127_6114279_3 Domain of unknown function (DUF4398) - - - 0.000000000000000000000005045 116.0
YYD3_k127_6114279_4 AsmA-like C-terminal region K07290 - - 0.00000000000000000000005263 113.0
YYD3_k127_6132626_0 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003573 259.0
YYD3_k127_6132626_1 Thrombospondin type 3 repeat - - - 0.00000000000000000000000000000000000000000000000000000000634 226.0
YYD3_k127_6132626_2 FG-GAP repeat - - - 0.00000000000000000000000000000000003334 156.0
YYD3_k127_6135091_0 flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 419.0
YYD3_k127_6135091_1 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 317.0
YYD3_k127_6135091_2 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000877 218.0
YYD3_k127_6135091_3 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000001376 126.0
YYD3_k127_6135091_4 pyridoxamine 5-phosphate - - - 0.00000000000000000000000166 108.0
YYD3_k127_6139051_0 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000004713 179.0
YYD3_k127_6139051_1 Domain of unknown function DUF11 - - - 0.00001019 60.0
YYD3_k127_6139051_2 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0001259 47.0
YYD3_k127_6139283_0 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 509.0
YYD3_k127_6142402_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 566.0
YYD3_k127_6142402_1 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 409.0
YYD3_k127_6142402_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 354.0
YYD3_k127_6142402_3 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008183 289.0
YYD3_k127_6142402_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 GO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000004124 290.0
YYD3_k127_6142402_5 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000001181 190.0
YYD3_k127_6191797_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1064.0
YYD3_k127_6191797_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008667 565.0
YYD3_k127_6191797_10 Glutamate synthase - - - 0.00000001672 60.0
YYD3_k127_6191797_2 HELICc2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 518.0
YYD3_k127_6191797_3 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000007954 210.0
YYD3_k127_6191797_4 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000001945 173.0
YYD3_k127_6191797_5 PFAM Integral membrane protein DUF92 - GO:0005575,GO:0016020 - 0.00000000000000000000000000000000001824 152.0
YYD3_k127_6191797_6 PFAM Organic solvent tolerance protein K04744 - - 0.000000000000000000000001409 120.0
YYD3_k127_6191797_7 Glycosyltransferase like family 2 - - - 0.00000000000000000000001535 115.0
YYD3_k127_6191797_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000003156 105.0
YYD3_k127_6191797_9 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000002533 93.0
YYD3_k127_6196761_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 429.0
YYD3_k127_6196761_1 PFAM SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 379.0
YYD3_k127_6196761_2 diacylglycerol kinase, catalytic region - - - 0.000000000000000000000000000003243 138.0
YYD3_k127_6205901_0 Belongs to the UPF0753 family K09822 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008285 516.0
YYD3_k127_6205901_1 proline dipeptidase activity K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 413.0
YYD3_k127_6205901_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000001964 122.0
YYD3_k127_6205901_3 Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins - - - 0.000000000000000000000000000239 125.0
YYD3_k127_6225874_0 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 577.0
YYD3_k127_6225874_1 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 295.0
YYD3_k127_6225874_2 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000001714 274.0
YYD3_k127_6227159_0 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005081 329.0
YYD3_k127_6227159_1 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 293.0
YYD3_k127_6227159_2 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000003155 238.0
YYD3_k127_6227159_3 Protein of unknown function (DUF998) - - - 0.00005036 55.0
YYD3_k127_6227159_4 Domain of unknown function K20276 - - 0.0003295 52.0
YYD3_k127_6230740_0 mechanosensitive ion channel activity - - - 0.000000000001387 78.0
YYD3_k127_6254195_0 EamA-like transporter family - - - 0.0000000000000000000000000000000406 145.0
YYD3_k127_6254195_1 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000008396 82.0
YYD3_k127_6254195_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000003769 64.0
YYD3_k127_6268865_0 L-threonylcarbamoyladenylate synthase K07566 GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008612 294.0
YYD3_k127_6268865_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000003257 240.0
YYD3_k127_6268865_2 Peptidase family M49 - - - 0.00000000000000000000000000000000000000000004699 164.0
YYD3_k127_6282558_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.588e-220 694.0
YYD3_k127_6282558_1 DAHP synthetase I family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 341.0
YYD3_k127_6282558_2 SIS domain K06041 - 5.3.1.13 0.000000000000000000000000000000000000003459 151.0
YYD3_k127_6291768_0 Penicillin amidase K01434 - 3.5.1.11 1.168e-214 713.0
YYD3_k127_6291768_1 Metallo-peptidase family M12B Reprolysin-like - - - 0.00000000000000000000000000006425 136.0
YYD3_k127_630302_0 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 503.0
YYD3_k127_630302_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000002754 235.0
YYD3_k127_630302_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000000000000000000000000000000000000001964 151.0
YYD3_k127_6309860_0 iron dependent repressor K03709 - - 0.0000000000000000000000000000000000000000000000000000000007913 214.0
YYD3_k127_6309860_1 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000001978 205.0
YYD3_k127_6309860_2 WD40 domain protein beta Propeller K03641 - - 0.000000000000000000000000000000000000001511 166.0
YYD3_k127_6309860_3 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000005127 154.0
YYD3_k127_6309860_4 Metallo-peptidase family M12B Reprolysin-like - - - 0.0000000000000000000002705 112.0
YYD3_k127_6309860_5 beta-fructofuranosidase activity - - - 0.00002388 49.0
YYD3_k127_6309860_6 Protein of unknown function (DUF1573) - - - 0.0008175 45.0
YYD3_k127_6335007_0 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 357.0
YYD3_k127_6335007_1 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 0.000000000000000000000000473 105.0
YYD3_k127_6335007_2 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000000000000001794 101.0
YYD3_k127_6367169_0 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 442.0
YYD3_k127_6367169_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 415.0
YYD3_k127_6367169_2 Outer membrane receptor - - - 0.0000000000000000000000004298 122.0
YYD3_k127_6395807_0 Domains REC, sigma54 interaction, HTH8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 491.0
YYD3_k127_6395807_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 414.0
YYD3_k127_6395807_2 Nitrogen fixation master sensor histidine kinase, PAS domain-containing K02668,K07708,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000006794 222.0
YYD3_k127_6395807_3 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000002198 186.0
YYD3_k127_6395807_4 - - - - 0.000000000000000000000000000005988 125.0
YYD3_k127_6418250_0 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 533.0
YYD3_k127_6418250_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001544 253.0
YYD3_k127_6418250_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000007731 147.0
YYD3_k127_6418250_3 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000007461 95.0
YYD3_k127_6418250_4 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.0000000000000000002144 104.0
YYD3_k127_6418250_5 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000324 94.0
YYD3_k127_6418250_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.0000000000000002039 89.0
YYD3_k127_6418250_7 protein conserved in archaea - - - 0.000000004634 69.0
YYD3_k127_6418250_8 Type II secretion system (T2SS), protein G K02456 - - 0.0000002142 63.0
YYD3_k127_6418250_9 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.0002123 47.0
YYD3_k127_6419304_0 Peptide transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006375 482.0
YYD3_k127_6419304_1 Phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 424.0
YYD3_k127_6419304_2 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000001905 270.0
YYD3_k127_6419304_3 Phosphatase K01090 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.1.3.16 0.000000000000000000000000000000000000000000000000000007168 195.0
YYD3_k127_6419304_4 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.000000000000000000000000216 116.0
YYD3_k127_6419304_5 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.000000000000000102 81.0
YYD3_k127_6433928_0 COG1404 Subtilisin-like serine proteases K13276 - - 0.00000000000001147 89.0
YYD3_k127_6433928_1 Thrombospondin type 3 repeat - - - 0.000000000001624 82.0
YYD3_k127_6433928_2 Thrombospondin type 3 repeat - - - 0.0000000009087 73.0
YYD3_k127_6433928_3 Thrombospondin type 3 repeat - - - 0.0000000108 70.0
YYD3_k127_6433928_4 amine dehydrogenase activity - - - 0.00000002962 61.0
YYD3_k127_6433928_5 amino acid activation for nonribosomal peptide biosynthetic process K05889 - 1.1.2.6 0.00001934 53.0
YYD3_k127_6437617_0 Cystathionine beta-synthase K01697 - 4.2.1.22 1.85e-201 636.0
YYD3_k127_6437617_1 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 381.0
YYD3_k127_6437617_2 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.0000000000000000000000000000000000000000000000000000000000000000000128 237.0
YYD3_k127_6437617_3 Domain of unknown function (DUF4160) - - - 0.0000000000000002606 86.0
YYD3_k127_6437617_4 Protein of unknown function (DUF2442) - - - 0.0000000000000002606 86.0
YYD3_k127_6437617_5 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.000000000000003105 77.0
YYD3_k127_6464541_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 295.0
YYD3_k127_6464541_1 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002916 269.0
YYD3_k127_6464541_2 Hydantoinase/oxoprolinase N-terminal region K10855 - 6.4.1.6 0.0000000000000000000000000151 111.0
YYD3_k127_6464541_3 DNA polymerase III - - - 0.000000000000001986 78.0
YYD3_k127_6474347_0 amidohydrolase - - - 2.015e-282 912.0
YYD3_k127_6474347_1 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008666 382.0
YYD3_k127_6474347_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 333.0
YYD3_k127_6474347_3 - - - - 0.00000000000000000000000000000000000000000003076 173.0
YYD3_k127_6474347_4 ECF sigma factor - - - 0.00000000000000000000000000000000000000000004686 177.0
YYD3_k127_6474347_5 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000003794 152.0
YYD3_k127_6474347_6 - - - - 0.0000000005917 66.0
YYD3_k127_6481605_0 PFAM Peptidase M20 K01436,K12940 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 375.0
YYD3_k127_6481605_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 343.0
YYD3_k127_6481605_2 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 301.0
YYD3_k127_6481605_3 Belongs to the GcvT family K00605,K06980 - 2.1.2.10 0.0000000000000000000000000000000000002649 154.0
YYD3_k127_6481605_4 EamA-like transporter family - - - 0.00000000000000000000000004175 116.0
YYD3_k127_6493432_0 amine dehydrogenase activity - - - 1.335e-262 840.0
YYD3_k127_6493432_1 Protease prsW family - - - 0.00000000000000000000000005653 124.0
YYD3_k127_6493432_2 DNA-templated transcription, initiation K03088 - - 0.000006658 50.0
YYD3_k127_6493432_3 PA14 domain - - - 0.00001507 49.0
YYD3_k127_6493692_0 Glutathione peroxidase - - - 0.000000000000000000000003484 111.0
YYD3_k127_6493692_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.0000001517 58.0
YYD3_k127_6493692_2 Glycosyl hydrolases family 2, sugar binding domain K01192 - 3.2.1.25 0.00001008 56.0
YYD3_k127_6521045_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001216 281.0
YYD3_k127_6521045_1 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000007951 225.0
YYD3_k127_6521045_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000003538 214.0
YYD3_k127_6524135_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 3.902e-203 650.0
YYD3_k127_6524135_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 544.0
YYD3_k127_6524135_2 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000003762 181.0
YYD3_k127_6524135_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000002847 163.0
YYD3_k127_6524135_4 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000001159 136.0
YYD3_k127_6524135_5 translation initiation factor activity K03699 - - 0.0000000000000000004098 96.0
YYD3_k127_6524135_6 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.7.77 0.0000000000000005346 91.0
YYD3_k127_6525946_0 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 319.0
YYD3_k127_6525946_1 Aldo Keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001379 262.0
YYD3_k127_6525946_2 FAD binding K00486 GO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0004502,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009987,GO:0016020,GO:0016174,GO:0016491,GO:0016651,GO:0016705,GO:0016709,GO:0019362,GO:0019637,GO:0019674,GO:0019748,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046496,GO:0048037,GO:0050660,GO:0050662,GO:0050664,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:0097159,GO:0098588,GO:0098805,GO:1901265,GO:1901360,GO:1901363,GO:1901564 1.14.13.9 0.000000000000009754 76.0
YYD3_k127_6525946_3 cellulose binding K07279 - - 0.000000003323 70.0
YYD3_k127_6525946_4 Putative serine esterase (DUF676) - - - 0.0000002378 55.0
YYD3_k127_6525946_5 Putative metal-binding motif - - - 0.000002565 61.0
YYD3_k127_6530294_1 3'-5' exonuclease K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000003569 260.0
YYD3_k127_6530294_2 Chalcone isomerase-like - - - 0.0000000000000000000000000000001129 130.0
YYD3_k127_6530294_3 PFAM Peptidase M16 inactive domain K07263 - - 0.000000000000000000004329 98.0
YYD3_k127_6530294_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000001425 81.0
YYD3_k127_6562962_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 3.439e-241 753.0
YYD3_k127_6562962_1 COG3209 Rhs family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 298.0
YYD3_k127_6562962_2 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.000000000000000000000000000000000000000000000000000000000000005521 220.0
YYD3_k127_6562962_3 arylamine N-acetyltransferase activity K00675 - 2.3.1.118 0.00000000000000000000000000000000000000000000000000000007884 220.0
YYD3_k127_6562962_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000318 171.0
YYD3_k127_6562962_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000006991 87.0
YYD3_k127_6578746_0 COG0577 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008921 354.0
YYD3_k127_6578746_1 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000002744 194.0
YYD3_k127_6578746_2 HlyD family secretion protein K02005 - - 0.00000000000000000000000000000000000000005036 167.0
YYD3_k127_6578746_3 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000456 93.0
YYD3_k127_6583364_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.0 1150.0
YYD3_k127_6583364_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 1.104e-194 623.0
YYD3_k127_6583364_2 glutamate dehydrogenase [NAD(P)+] activity K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000002346 186.0
YYD3_k127_6583364_3 metallophosphoesterase K07096 - - 0.00000000000000000002005 91.0
YYD3_k127_6606002_0 PFAM peptidase M14, carboxypeptidase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005396 577.0
YYD3_k127_6606002_1 Zn_pept - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 322.0
YYD3_k127_6606002_2 PFAM Short-chain dehydrogenase reductase SDR K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000922 244.0
YYD3_k127_6606002_3 Protein of unknown function (DUF2781) - - - 0.00000000000000000000000000000000000000000000000000006143 199.0
YYD3_k127_6606002_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000007739 115.0
YYD3_k127_6606002_5 Cytochrome c K00406,K08906 - - 0.0000000000001016 75.0
YYD3_k127_6616364_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 505.0
YYD3_k127_6616364_1 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000006893 263.0
YYD3_k127_6616364_2 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000423 278.0
YYD3_k127_6616364_3 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001759 246.0
YYD3_k127_6616364_4 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.000000000000000000000000000000000508 134.0
YYD3_k127_6616364_5 Protein of unknown function, DUF393 - - - 0.000000000000000000000000000000001216 134.0
YYD3_k127_6616364_6 AMP binding K06149 - - 0.000000000000000000001732 100.0
YYD3_k127_6625485_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 480.0
YYD3_k127_6625485_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 458.0
YYD3_k127_6627331_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005016 506.0
YYD3_k127_6627331_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 342.0
YYD3_k127_6627331_2 PFAM Metallophosphoesterase K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004592 283.0
YYD3_k127_6627331_3 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007464 299.0
YYD3_k127_6627331_4 Belongs to the FPP GGPP synthase family K00795,K13789 GO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033383,GO:0033384,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0071704,GO:0090407,GO:1901576 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000266 253.0
YYD3_k127_6627331_5 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000003411 233.0
YYD3_k127_6627331_6 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000132 231.0
YYD3_k127_6627331_7 ubiE/COQ5 methyltransferase family K00570 - 2.1.1.17,2.1.1.71 0.000000000000000000000000000000000000000000001971 177.0
YYD3_k127_6627331_9 Helix-turn-helix domain - - - 0.0009931 50.0
YYD3_k127_664701_0 histidine kinase HAMP region domain protein K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007315 283.0
YYD3_k127_664701_1 Two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002751 286.0
YYD3_k127_664701_10 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000008953 77.0
YYD3_k127_664701_11 Protein of unknown function (DUF465) - - - 0.0000008224 59.0
YYD3_k127_664701_2 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000000000000000001503 239.0
YYD3_k127_664701_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000001139 204.0
YYD3_k127_664701_4 ggdef domain - - - 0.000000000000000000000000000000000000000000000001727 192.0
YYD3_k127_664701_5 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 4.1.1.65 0.000000000000000000000000000000000000000000000352 173.0
YYD3_k127_664701_6 ggdef domain - - - 0.000000000000000000000000000000000000000000007088 188.0
YYD3_k127_664701_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000002646 137.0
YYD3_k127_664701_8 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000000000000000001089 130.0
YYD3_k127_664701_9 Glycoprotease family K01409,K14742 - 2.3.1.234 0.00000000000000001145 94.0
YYD3_k127_666004_0 Polysaccharide deacetylase K01452 - 3.5.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001634 277.0
YYD3_k127_666004_1 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K00571 - 2.1.1.72 0.0000000000000000000000000000001218 139.0
YYD3_k127_666004_2 phosphohistidine phosphatase K08296 - - 0.00000000000000000000000000002878 123.0
YYD3_k127_666004_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000001443 110.0
YYD3_k127_666004_4 AMP-binding enzyme C-terminal domain K18687 - 6.2.1.41 0.0000000000003992 72.0
YYD3_k127_6662259_0 PFAM polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007325 302.0
YYD3_k127_6662259_1 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000009101 229.0
YYD3_k127_6662259_2 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000127 165.0
YYD3_k127_6662259_3 TIGRFAM DNA binding domain protein, excisionase family - - - 0.0004101 50.0
YYD3_k127_6679504_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009292,GO:0009294,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030420,GO:0031668,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0046483,GO:0050896,GO:0051704,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007574 492.0
YYD3_k127_6679504_1 acetyltransferase - - - 0.000000000000000000000000000000000000000001792 158.0
YYD3_k127_6679504_2 Lytic transglycosylase catalytic K08307 - - 0.0001177 51.0
YYD3_k127_6679504_3 Resolvase - - - 0.0003277 47.0
YYD3_k127_6699072_0 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007587 536.0
YYD3_k127_6699072_1 Sigma-70, region 4 K03088 - - 0.0000000000000000001698 91.0
YYD3_k127_6735906_0 mannose-ethanolamine phosphotransferase activity K01077 GO:0003674,GO:0003824,GO:0004035,GO:0004346,GO:0005488,GO:0005575,GO:0005623,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008877,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0042597,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0046872,GO:0046914,GO:0050308,GO:0050309,GO:0098519 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 339.0
YYD3_k127_6735906_1 NB-ARC domain - - - 0.0000000000000000000000000000000000000000002482 171.0
YYD3_k127_6735906_2 - - - - 0.00000000187 66.0
YYD3_k127_6761645_0 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004436 303.0
YYD3_k127_6761645_1 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000006785 181.0
YYD3_k127_6761645_2 CHAT domain - - - 0.00000000000000000000000000008836 129.0
YYD3_k127_6761645_3 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000958 120.0
YYD3_k127_6761645_4 HlyD family secretion protein K01993 - - 0.00000000001573 72.0
YYD3_k127_6761645_5 Protein of unknown function (DUF1054) - - - 0.0000000003415 72.0
YYD3_k127_6763286_0 Bacterial regulatory protein, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007536 442.0
YYD3_k127_6763286_1 Stimulus-sensing domain K14980 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000981 183.0
YYD3_k127_6772895_0 Inositol monophosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 297.0
YYD3_k127_6772895_1 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001584 267.0
YYD3_k127_6772895_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000009587 190.0
YYD3_k127_6772895_3 redox protein, regulator of disulfide bond formation K07397 - - 0.00000000000000000000000000000000003476 140.0
YYD3_k127_6772895_4 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000003764 85.0
YYD3_k127_6772895_5 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.000000000000005839 87.0
YYD3_k127_6773823_0 Oligopeptidase F K08602 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 541.0
YYD3_k127_6773823_1 Calcineurin-like phosphoesterase K07099 - - 0.00000000000000000000000000000000000000000000000000000000000000003694 230.0
YYD3_k127_6773823_2 Yip1 domain - - - 0.00000000000001067 87.0
YYD3_k127_6773823_3 CarD-like/TRCF domain K07736 - - 0.000000003056 60.0
YYD3_k127_6773823_4 Protein of unknown function (DUF2752) - - - 0.00007958 55.0
YYD3_k127_678596_0 Protein of unknown function (DUF541) K09797 - - 0.000000000000000000000000000000000000000000000000000000000000001716 225.0
YYD3_k127_6797065_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 568.0
YYD3_k127_6797065_1 NAD dependent epimerase/dehydratase family K02377 - 1.1.1.271 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 443.0
YYD3_k127_6797065_2 Protein conserved in bacteria K06320,K20444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000147 276.0
YYD3_k127_6797065_3 Carbamoyltransferase C-terminus K00612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002417 258.0
YYD3_k127_6797065_4 phosphinothricin N-acetyltransferase activity - - - 0.0000002488 64.0
YYD3_k127_6797065_5 PFAM Polysaccharide deacetylase - - - 0.0000003566 63.0
YYD3_k127_6797986_0 Alpha/beta hydrolase family - - - 0.000000004019 66.0
YYD3_k127_6797986_1 Cupin 2, conserved barrel domain protein - - - 0.0002202 53.0
YYD3_k127_6818519_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 2.276e-246 772.0
YYD3_k127_6818519_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 370.0
YYD3_k127_6818519_2 An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 302.0
YYD3_k127_6818519_3 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000002667 71.0
YYD3_k127_6819681_0 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004534 273.0
YYD3_k127_6819681_2 SNARE associated Golgi protein K03975 - - 0.000000002702 59.0
YYD3_k127_6823168_0 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000001166 216.0
YYD3_k127_6823168_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000004008 195.0
YYD3_k127_6823168_2 glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000008734 168.0
YYD3_k127_6823168_3 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000002516 155.0
YYD3_k127_6823168_4 Glycosyl transferase, family 2 - - - 0.00000000000000000000001764 117.0
YYD3_k127_6823168_5 amidohydrolase - - - 0.00000000000009192 74.0
YYD3_k127_6823787_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 579.0
YYD3_k127_6823787_1 cystathionine gamma-synthase activity K01739,K01758,K01760,K01761 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004121,GO:0004123,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48,4.4.1.1,4.4.1.11,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000534 458.0
YYD3_k127_6823787_2 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000004175 116.0
YYD3_k127_6823787_3 Recombinase zinc beta ribbon domain - GO:0000150,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140097,GO:1901360 - 0.0000000000000000001342 100.0
YYD3_k127_6823787_4 - - - - 0.00000006473 55.0
YYD3_k127_6823787_5 PFAM Septum formation initiator K05589 - - 0.000006755 55.0
YYD3_k127_686494_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 400.0
YYD3_k127_686494_1 Domains in Na-Ca exchangers and integrin-beta4 K01406 - 3.4.24.40 0.000000001252 70.0
YYD3_k127_6877233_0 Sortilin, neurotensin receptor 3, - - - 7.951e-316 998.0
YYD3_k127_6877233_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 451.0
YYD3_k127_6877233_10 Plasmid stability protein - - - 0.000001277 57.0
YYD3_k127_6877233_11 Glycosyltransferase - - - 0.0006314 45.0
YYD3_k127_6877233_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 424.0
YYD3_k127_6877233_3 Selenocysteine lyase K04127 - 5.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 409.0
YYD3_k127_6877233_4 Bacterial regulatory protein, Fis family K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 395.0
YYD3_k127_6877233_5 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 370.0
YYD3_k127_6877233_6 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006378 266.0
YYD3_k127_6877233_7 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000003409 173.0
YYD3_k127_6877233_8 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000000000000000002945 137.0
YYD3_k127_6877233_9 Protein of unknown function (DUF1579) - - - 0.00000000000000000000000000001026 127.0
YYD3_k127_695935_0 Isocitrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005873 526.0
YYD3_k127_695935_1 Putative neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 333.0
YYD3_k127_695935_2 Protein of unknown function (DUF1579) - - - 0.00000322 57.0
YYD3_k127_695935_3 Membrane - - - 0.000006431 57.0
YYD3_k127_712398_0 Rubrerythrin K22405 - 1.6.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008657 465.0
YYD3_k127_712398_1 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 363.0
YYD3_k127_712398_2 Cytochrome C oxidase subunit II, periplasmic domain K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000006707 250.0
YYD3_k127_712398_3 - - - - 0.00000000000000000000000000000000000000000000000000000000212 208.0
YYD3_k127_712398_4 protein tyrosine kinase activity K03593 - - 0.00000000000000000000000000000000001612 150.0
YYD3_k127_712398_6 FR47-like protein K03789 - 2.3.1.128 0.0000004997 61.0
YYD3_k127_726434_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 527.0
YYD3_k127_726434_1 Glyceraldehyde-3-phosphate dehydrogenase K00150 - 1.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 452.0
YYD3_k127_726434_10 Regulatory protein - - - 0.0000000000000000000000722 106.0
YYD3_k127_726434_11 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.0000000000000000000002022 102.0
YYD3_k127_726434_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 323.0
YYD3_k127_726434_3 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002656 275.0
YYD3_k127_726434_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0030497,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000009004 267.0
YYD3_k127_726434_5 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005076 284.0
YYD3_k127_726434_6 Electron transfer flavoprotein domain K03521 - - 0.0000000000000000000000000000000000000000000000000000000005166 211.0
YYD3_k127_726434_7 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000005805 134.0
YYD3_k127_726434_8 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000002467 120.0
YYD3_k127_726434_9 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000009562 108.0
YYD3_k127_741464_0 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 506.0
YYD3_k127_741464_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000001192 255.0
YYD3_k127_741464_2 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.0000000000000000000002013 98.0
YYD3_k127_741464_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000184 96.0
YYD3_k127_741464_5 Histidine kinase - - - 0.0003204 50.0
YYD3_k127_741474_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K00187 - 1.2.7.7 6.745e-209 669.0
YYD3_k127_741474_1 Cytochrome c3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006848 354.0
YYD3_k127_741474_2 Pyruvate:ferredoxin oxidoreductase core domain II K00186 - 1.2.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000005659 262.0
YYD3_k127_741474_3 denitrification pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005915 266.0
YYD3_k127_741474_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006633 263.0
YYD3_k127_747689_0 PAS fold K07708 - 2.7.13.3 0.000000000000001376 79.0
YYD3_k127_747689_1 Bacterial Ig-like domain (group 3) - - - 0.00000006086 66.0
YYD3_k127_747689_2 general secretion pathway protein K02457,K08084 - - 0.0001992 50.0
YYD3_k127_757739_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 595.0
YYD3_k127_757739_1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.0000000000000000000000000000000000000005587 151.0
YYD3_k127_757739_2 - - - - 0.000000000000000000000000001744 118.0
YYD3_k127_769640_0 - - - - 0.0000000000000000000000000000000000000000000000000005208 201.0
YYD3_k127_769640_1 Transcriptional regulator K07979 - - 0.0000000000000000000003691 106.0
YYD3_k127_769640_2 COG3209 Rhs family protein - - - 0.000000000000000000002104 96.0
YYD3_k127_774535_0 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 509.0
YYD3_k127_774535_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000004694 190.0
YYD3_k127_776949_0 Tricorn protease homolog - - - 0.0 1403.0
YYD3_k127_776949_1 Dienelactone hydrolase family - - - 0.0 1201.0
YYD3_k127_776949_2 Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 496.0
YYD3_k127_776949_3 Alanine dehydrogenase/PNT, N-terminal domain K00290,K14157 - 1.5.1.7,1.5.1.8,1.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 426.0
YYD3_k127_776949_4 PFAM Cys Met metabolism K01760,K01761 - 4.4.1.11,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 422.0
YYD3_k127_776949_5 Saccharopine dehydrogenase C-terminal domain K00293 - 1.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 344.0
YYD3_k127_776949_6 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 307.0
YYD3_k127_776949_7 Cytochrome c K00413 - - 0.00000000000000000000000000000000000000000000000000000002951 220.0
YYD3_k127_776949_8 Molydopterin dinucleotide binding domain K08352 - 1.8.5.5 0.0000000000000000000000000000000000000000000003683 182.0
YYD3_k127_776949_9 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000003196 127.0
YYD3_k127_793255_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 1.826e-232 733.0
YYD3_k127_793255_1 cellulose binding K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000001073 197.0
YYD3_k127_793255_2 - - - - 0.00000000000000008374 82.0
YYD3_k127_793749_0 - - - - 4.925e-286 895.0
YYD3_k127_793749_1 C-terminal binding-module, SLH-like, of glucodextranase - - - 0.0000000000000000000000000000000000000000000000000000000000000003099 232.0
YYD3_k127_833044_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006435 423.0
YYD3_k127_833044_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 370.0
YYD3_k127_833044_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 348.0
YYD3_k127_833044_3 COG0644 Dehydrogenases (flavoproteins) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004615 264.0
YYD3_k127_833044_4 Histidine kinase K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000004112 211.0
YYD3_k127_833044_5 Phosphopantetheine attachment site K02078 - - 0.0000000000000000000676 93.0
YYD3_k127_86342_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 1.295e-220 693.0
YYD3_k127_86342_1 response regulator K02481,K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 495.0
YYD3_k127_86342_2 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005902 394.0
YYD3_k127_86342_3 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001621 265.0
YYD3_k127_86342_4 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000002884 241.0
YYD3_k127_86342_5 PAS domain - - - 0.000000000000000000000000000000000000000001893 166.0
YYD3_k127_86342_6 Sigma-70, region 4 - - - 0.000000000005675 74.0
YYD3_k127_86342_7 TIGRFAM TonB family protein K03832 - - 0.0000000003303 72.0
YYD3_k127_86342_8 - - - - 0.0000001925 59.0
YYD3_k127_876795_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000001262 220.0
YYD3_k127_876795_1 phosphorelay signal transduction system K02477,K07705,K21696 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.0000000000000000000000000000000000000000002392 179.0
YYD3_k127_876795_2 Histidine kinase - - - 0.000000000000000000000000000000000000005609 166.0
YYD3_k127_876795_3 Polymer-forming cytoskeletal - - - 0.00000000002971 75.0
YYD3_k127_88164_0 Putative regulatory protein - - - 0.00000000000000000000000000000003388 128.0
YYD3_k127_88164_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000003405 70.0
YYD3_k127_884888_0 belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 1.874e-244 766.0
YYD3_k127_884888_1 Protein kinase domain K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000006771 211.0
YYD3_k127_884888_2 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000000004632 76.0
YYD3_k127_884888_3 Putative porin - - - 0.000000001659 64.0
YYD3_k127_884888_4 Short-chain dehydrogenase reductase sdr - - - 0.000001036 57.0
YYD3_k127_902663_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 3.91e-235 751.0
YYD3_k127_902663_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 5.816e-216 689.0
YYD3_k127_902663_2 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 310.0
YYD3_k127_902663_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177,K03483 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000009835 203.0
YYD3_k127_902663_4 positive regulation of growth rate - - - 0.00000000000000000000000000000000000001382 158.0
YYD3_k127_902663_5 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 - 2.1.1.171 0.000000000000000000000000000000001969 146.0
YYD3_k127_902663_6 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000002426 126.0
YYD3_k127_902663_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043021,GO:0043024,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000009938 105.0
YYD3_k127_902663_8 Protein of unknown function (DUF503) K09764 - - 0.0000000000003743 73.0
YYD3_k127_902663_9 PFAM Type II secretion system protein E K02454,K02652 - - 0.000000006565 68.0
YYD3_k127_936183_0 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 607.0
YYD3_k127_936183_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002157 256.0
YYD3_k127_936183_2 - - - - 0.00000000000000000000000000000000000002118 158.0
YYD3_k127_936183_3 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K11618 - - 0.00000002623 66.0
YYD3_k127_94317_0 Cell division ATP-binding protein ftsE K09811,K09812 GO:0000166,GO:0000287,GO:0000910,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007049,GO:0008144,GO:0008150,GO:0008356,GO:0009898,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019897,GO:0019898,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0030145,GO:0030554,GO:0031234,GO:0032153,GO:0032506,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042173,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043937,GO:0043938,GO:0044085,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0046677,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0065007,GO:0070297,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363,GO:1902531 - 0.000000000000000000000000000000000000000000000000000000000000000000001224 242.0
YYD3_k127_94317_1 aminopeptidase - - - 0.0000000000000000000000000000000003307 153.0
YYD3_k127_94317_2 enoyl-CoA hydratase activity K07515 GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003857,GO:0003985,GO:0003988,GO:0004300,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009062,GO:0009295,GO:0009605,GO:0009611,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010259,GO:0016020,GO:0016042,GO:0016054,GO:0016407,GO:0016408,GO:0016453,GO:0016491,GO:0016507,GO:0016508,GO:0016509,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0016829,GO:0016835,GO:0016836,GO:0017076,GO:0019395,GO:0019752,GO:0019866,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032868,GO:0032991,GO:0033218,GO:0034440,GO:0036094,GO:0036125,GO:0042060,GO:0042221,GO:0042493,GO:0042579,GO:0042594,GO:0042645,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046395,GO:0048037,GO:0048856,GO:0050662,GO:0050896,GO:0051287,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:0098798,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901652,GO:1901681,GO:1901698,GO:1901700 1.1.1.211,4.2.1.17 0.000000000000000000000000000000008589 132.0
YYD3_k127_94317_3 Part of the ABC transporter FtsEX involved in cellular division K09811 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0009274,GO:0009276,GO:0009987,GO:0016020,GO:0016021,GO:0030312,GO:0030313,GO:0031224,GO:0031975,GO:0032153,GO:0044425,GO:0044464,GO:0051301,GO:0071944 - 0.0000000000000000000002477 111.0
YYD3_k127_94500_0 Amino acid transporter K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 506.0
YYD3_k127_94500_1 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000006409 203.0
YYD3_k127_94500_2 EVE domain - - - 0.0000000000000000000000000000000000000000000000285 177.0
YYD3_k127_94500_3 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000000001203 156.0
YYD3_k127_94500_4 sigma factor antagonist activity K04757,K17752 - 2.7.11.1 0.000000000000000000002076 101.0
YYD3_k127_94500_5 Acetyltransferase (GNAT) domain K03789 GO:0003674,GO:0003824,GO:0004596,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031365,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.128 0.000000004906 64.0
YYD3_k127_94500_6 Phosphoenolpyruvate phosphomutase - - - 0.0000007894 60.0
YYD3_k127_956314_0 PAS fold K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000002586 250.0
YYD3_k127_956314_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000002569 178.0
YYD3_k127_956314_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030312,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0071704,GO:0071944,GO:0140096,GO:1901564 5.2.1.8 0.00000000000000000000001395 116.0
YYD3_k127_956314_3 transcriptional - - - 0.000000000000000000001488 95.0
YYD3_k127_959281_0 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 482.0
YYD3_k127_959281_1 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 447.0
YYD3_k127_959281_10 Mur ligase, middle domain protein K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000004352 133.0
YYD3_k127_959281_11 nucleotide phosphatase activity, acting on free nucleotides K00943,K02013,K02017,K03574,K03752,K06928 - 2.7.4.9,2.7.7.77,3.6.1.15,3.6.1.55,3.6.3.29,3.6.3.34 0.00000000000000000000000001647 120.0
YYD3_k127_959281_12 Subtilase family - - - 0.0000000000000000000003251 114.0
YYD3_k127_959281_13 PFAM Rieske 2Fe-2S K02636 - 1.10.9.1 0.000000000000002845 83.0
YYD3_k127_959281_14 Protein of unknown function (DUF454) K09790 - - 0.000000000003918 74.0
YYD3_k127_959281_15 Protein of unknown function (DUF429) - - - 0.0008686 51.0
YYD3_k127_959281_2 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 438.0
YYD3_k127_959281_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008584 282.0
YYD3_k127_959281_4 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009549 269.0
YYD3_k127_959281_5 Subtilase family K17734 - - 0.00000000000000000000000000000000000000000000000000001672 217.0
YYD3_k127_959281_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000008161 202.0
YYD3_k127_959281_7 RNase_H superfamily K07502 - - 0.0000000000000000000000000000000000000000000000004305 191.0
YYD3_k127_959281_8 Belongs to the acetyltransferase family. ArgA subfamily - - - 0.00000000000000000000000000000000000000001029 171.0
YYD3_k127_959281_9 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.000000000000000000000000000000008701 144.0
YYD3_k127_971940_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000001015 231.0
YYD3_k127_971940_1 MBOAT, membrane-bound O-acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000026 198.0
YYD3_k127_971940_2 Cartilage oligomeric matrix protein K04659 GO:0000902,GO:0001501,GO:0001503,GO:0001932,GO:0001934,GO:0001936,GO:0001938,GO:0001968,GO:0002020,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0003416,GO:0003417,GO:0003674,GO:0005102,GO:0005178,GO:0005198,GO:0005201,GO:0005488,GO:0005496,GO:0005499,GO:0005509,GO:0005515,GO:0005518,GO:0005539,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005912,GO:0005924,GO:0005927,GO:0006928,GO:0006950,GO:0007155,GO:0007160,GO:0007275,GO:0007399,GO:0007517,GO:0007610,GO:0008150,GO:0008201,GO:0008284,GO:0008289,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010941,GO:0012505,GO:0014812,GO:0016043,GO:0016203,GO:0016477,GO:0016525,GO:0016528,GO:0016529,GO:0019220,GO:0019222,GO:0019842,GO:0019899,GO:0021700,GO:0022008,GO:0022603,GO:0022607,GO:0022610,GO:0030030,GO:0030054,GO:0030055,GO:0030154,GO:0030182,GO:0030198,GO:0030334,GO:0030335,GO:0030855,GO:0031012,GO:0031175,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031589,GO:0031594,GO:0032101,GO:0032103,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0033555,GO:0033627,GO:0034103,GO:0034976,GO:0035265,GO:0035989,GO:0036094,GO:0040007,GO:0040011,GO:0040012,GO:0040017,GO:0042127,GO:0042325,GO:0042327,GO:0042981,GO:0043062,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043236,GO:0043237,GO:0043394,GO:0043395,GO:0043931,GO:0043933,GO:0044085,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045202,GO:0045765,GO:0045937,GO:0046872,GO:0048265,GO:0048266,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048705,GO:0048731,GO:0048736,GO:0048799,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050678,GO:0050679,GO:0050730,GO:0050731,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0050840,GO:0050896,GO:0050920,GO:0050921,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051216,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051270,GO:0051272,GO:0051451,GO:0051674,GO:0051716,GO:0060173,GO:0060231,GO:0060255,GO:0060343,GO:0060346,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0060429,GO:0060538,GO:0060548,GO:0061053,GO:0061061,GO:0061383,GO:0061430,GO:0061448,GO:0062023,GO:0065003,GO:0065007,GO:0070161,GO:0070977,GO:0071603,GO:0071622,GO:0071624,GO:0071695,GO:0071840,GO:0080090,GO:0090022,GO:0090023,GO:0090136,GO:0097159,GO:0097367,GO:0098609,GO:0098868,GO:0120036,GO:0120039,GO:1901342,GO:1901343,GO:1901681,GO:1902622,GO:1902624,GO:2000026,GO:2000145,GO:2000147,GO:2000181 - 0.0000000000000000002762 104.0
YYD3_k127_971940_3 PFAM Pyrrolo-quinoline quinone K00117 - 1.1.5.2 0.0007876 47.0
YYD3_k127_980085_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 347.0
YYD3_k127_980085_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 330.0
YYD3_k127_980085_4 Multicopper oxidase - - - 0.00000000004079 67.0