logo

Overview

ID MAG04655
Name YYD3_bin.5
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Gemmatimonadales
Family GWC2-71-9
Genus SZUA-320
Species SZUA-320 sp035709185
Assembly information
Completeness (%) 69.41
Contamination (%) 0.99
GC content (%) 68.0
N50 (bp) 4,502
Genome size (bp) 2,607,122

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2568

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1002140_0 Enoyl-CoA hydratase carnithine racemase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000005399 179.0
YYD3_k127_1002140_1 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716 2.1.2.2 0.0000000005288 68.0
YYD3_k127_1003731_0 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 330.0
YYD3_k127_1003731_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000001933 263.0
YYD3_k127_1003731_2 response regulator K07782 - - 0.00000000000000000000000000000000000000000000000000000000000000002475 232.0
YYD3_k127_1003731_3 - - - - 0.000000000000000000000004903 106.0
YYD3_k127_1003731_4 Alpha/beta hydrolase family - - - 0.0000000000000000006423 98.0
YYD3_k127_1008987_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000002274 182.0
YYD3_k127_1008987_1 Subtilase family K13277 - - 0.000007818 56.0
YYD3_k127_1008987_2 peptidase activity, acting on L-amino acid peptides K07004,K09955,K12567,K21449 - 2.7.11.1 0.0000117 50.0
YYD3_k127_1014953_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000001226 150.0
YYD3_k127_1014953_1 Domain of unknown function (DUF4345) - - - 0.0000000000000000013 91.0
YYD3_k127_1014953_2 - - - - 0.00000001358 59.0
YYD3_k127_1027849_0 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 511.0
YYD3_k127_1051567_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004185 417.0
YYD3_k127_1051567_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003971 346.0
YYD3_k127_1051567_2 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000004983 166.0
YYD3_k127_1051567_3 4 iron, 4 sulfur cluster binding K02572,K02573 - - 0.0000000000000000000000000000000002253 139.0
YYD3_k127_1051567_4 Cupin - - - 0.000000000000000002036 85.0
YYD3_k127_1051567_5 Protein conserved in bacteria - - - 0.000003305 60.0
YYD3_k127_1064803_0 elongation factor SelB, winged helix K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 381.0
YYD3_k127_1064803_1 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000005342 78.0
YYD3_k127_1064803_2 Protein of unknown function (DUF295) - - - 0.0003987 44.0
YYD3_k127_1074014_0 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.00000000000000000000000000000000000000000000002457 179.0
YYD3_k127_1074014_1 OST-HTH/LOTUS domain - - - 0.0000004377 61.0
YYD3_k127_1074870_0 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 1.697e-265 828.0
YYD3_k127_1074870_1 Thiolase, C-terminal domain K02615 - 2.3.1.174,2.3.1.223 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 560.0
YYD3_k127_1074870_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 456.0
YYD3_k127_1074870_3 Bacterial transferase hexapeptide (six repeats) K02617 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 312.0
YYD3_k127_1074870_4 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 314.0
YYD3_k127_1074870_5 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000009118 193.0
YYD3_k127_1074870_6 phenylacetic acid degradation protein K02614 - - 0.000000000000000000000000000000000001041 146.0
YYD3_k127_1079811_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1533.0
YYD3_k127_1122844_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 455.0
YYD3_k127_1122844_1 ribosomal protein - - - 0.000000000000000000000000000001705 126.0
YYD3_k127_1122844_2 Adenylosuccinate lyase C-terminus K01857 - 5.5.1.2 0.00000000000000000000000000001856 117.0
YYD3_k127_1154227_0 N-terminal TM domain of oligopeptide transport permease C K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 329.0
YYD3_k127_1154227_1 4Fe-4S single cluster domain K07001 - - 0.0000000000000000000000000000000000000000000000000000000343 205.0
YYD3_k127_1154227_2 23S rRNA-intervening sequence protein - - - 0.00000000000003386 77.0
YYD3_k127_1168407_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 338.0
YYD3_k127_1168407_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 325.0
YYD3_k127_1168407_2 Belongs to the peptidase M50B family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 308.0
YYD3_k127_1168407_3 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 304.0
YYD3_k127_1168407_4 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001808 276.0
YYD3_k127_1168407_5 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.0000000000000000000000000000000000000224 160.0
YYD3_k127_1168407_6 Cold shock K03704 - - 0.000000000000000000000000000002596 121.0
YYD3_k127_1180100_0 Sortilin, neurotensin receptor 3, - - - 0.0 1030.0
YYD3_k127_1180968_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 413.0
YYD3_k127_1180968_1 Sporulation related domain - - - 0.000000000000000671 87.0
YYD3_k127_1180977_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001248 290.0
YYD3_k127_1180977_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002458 259.0
YYD3_k127_1180977_2 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.0000000000000000000000000000000000000001956 156.0
YYD3_k127_1180977_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000000000002337 118.0
YYD3_k127_1180977_4 - - - - 0.000000000000000000000005199 114.0
YYD3_k127_1180997_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003728 273.0
YYD3_k127_1180997_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009014 263.0
YYD3_k127_1191547_0 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000005554 211.0
YYD3_k127_1191547_1 3-hydroxyanthranilate 3,4-dioxygenase activity - - - 0.0000000000000000000000000000000000000000004675 161.0
YYD3_k127_1195598_0 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 330.0
YYD3_k127_1195598_1 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003268 257.0
YYD3_k127_1195598_2 Acid phosphatase homologues - - - 0.000000000000000000002678 102.0
YYD3_k127_1200450_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 1.461e-206 648.0
YYD3_k127_1200450_1 O-acyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 360.0
YYD3_k127_1200450_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 357.0
YYD3_k127_1200450_3 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 324.0
YYD3_k127_1200450_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002687 272.0
YYD3_k127_1200450_5 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009498 270.0
YYD3_k127_1200450_6 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000000000000001097 184.0
YYD3_k127_1200450_7 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000000013 149.0
YYD3_k127_1200450_8 Thioesterase K07107 - - 0.00000000000000000000000000000000164 138.0
YYD3_k127_1200450_9 Phosphoribosyl transferase domain K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000003513 131.0
YYD3_k127_1201027_0 e3 binding domain K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 367.0
YYD3_k127_1201027_1 Transketolase, pyrimidine binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009748 284.0
YYD3_k127_1220007_0 Aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 297.0
YYD3_k127_1220007_1 Serine aminopeptidase, S33 - - - 0.000000000000000000000000001027 117.0
YYD3_k127_1220007_2 COG1651 Protein-disulfide isomerase - - - 0.00000000001008 74.0
YYD3_k127_1237980_0 Acyl-CoA dehydrogenase, C-terminal domain K18244 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 490.0
YYD3_k127_1237980_1 Ribonuclease E/G family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003896 250.0
YYD3_k127_1239264_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 414.0
YYD3_k127_1239264_1 nonribosomal peptide K00666,K01897,K18660,K18661 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 293.0
YYD3_k127_1239264_2 Leishmanolysin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001124 301.0
YYD3_k127_1239264_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001818 241.0
YYD3_k127_1239264_4 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000439 215.0
YYD3_k127_1239264_5 Membrane - - - 0.0000000001773 70.0
YYD3_k127_1245157_0 TIGRFAM phosphate ABC transporter, phosphate-binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 390.0
YYD3_k127_1245157_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 336.0
YYD3_k127_1245157_2 Phosphate transport system permease protein PstA K02038 - - 0.000000000000000000000000000000000005701 143.0
YYD3_k127_1245699_0 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 441.0
YYD3_k127_1245699_1 Dehydrogenase E1 component K00164,K01616 - 1.2.4.2,4.1.1.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004147 286.0
YYD3_k127_1245699_2 Tellurite resistance protein TehB - - - 0.0000000000001565 85.0
YYD3_k127_1251542_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 626.0
YYD3_k127_1251542_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 394.0
YYD3_k127_1251542_2 Domain of unknown function (DUF3471) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007777 339.0
YYD3_k127_1258590_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 2.198e-226 708.0
YYD3_k127_1258590_1 deoxyribose-phosphate aldolase activity K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 494.0
YYD3_k127_1258590_2 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001485 273.0
YYD3_k127_1270753_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 424.0
YYD3_k127_1270753_1 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001366 249.0
YYD3_k127_1270753_2 PFAM CorA-like Mg2 transporter protein K03284 - - 0.000000000000001995 87.0
YYD3_k127_1278881_0 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000001183 144.0
YYD3_k127_1278881_1 Domain of unknown function (DU1801) - - - 0.00000000000000000000003718 104.0
YYD3_k127_1278881_2 Cupin domain - - - 0.00000000000000000000271 98.0
YYD3_k127_1278881_3 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.00000000000000003675 85.0
YYD3_k127_1281938_0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 577.0
YYD3_k127_1281938_1 Zinc dependent phospholipase C - - - 0.0000000000000000000000000000000000004274 151.0
YYD3_k127_1281938_2 Belongs to the multicopper oxidase YfiH RL5 family K05810 GO:0003674,GO:0005488,GO:0005507,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.0000000000000000000000000007286 123.0
YYD3_k127_1291006_0 HTH domain - - - 0.00000000000000000000000000000000000000005524 160.0
YYD3_k127_1291006_1 peptide deformylase activity K01462 - 3.5.1.88 0.00000000000000000000000000000000001907 142.0
YYD3_k127_129619_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000008067 104.0
YYD3_k127_129619_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000001986 64.0
YYD3_k127_129619_2 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000003641 59.0
YYD3_k127_1312105_0 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000422 280.0
YYD3_k127_1312105_1 TIGRFAM TIGR00268 family protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000004996 216.0
YYD3_k127_1312105_2 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000004896 190.0
YYD3_k127_1312105_3 RF-1 domain K15034 - - 0.000000000000000000000000000001396 126.0
YYD3_k127_1312105_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000001032 124.0
YYD3_k127_1312105_5 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000000000000000001668 106.0
YYD3_k127_1312105_6 Allophanate hydrolase subunit 1 K06351 - - 0.00000000000002048 81.0
YYD3_k127_1318942_0 ABC transporter transmembrane region K11085 - - 8.986e-215 675.0
YYD3_k127_1318942_1 DinB family - - - 0.0000000000000001051 82.0
YYD3_k127_1318942_2 Ankyrin repeats (3 copies) - - - 0.0007204 44.0
YYD3_k127_1324694_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 496.0
YYD3_k127_1324694_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005038 354.0
YYD3_k127_1324694_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 349.0
YYD3_k127_1324694_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003609 290.0
YYD3_k127_1324694_4 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000003984 228.0
YYD3_k127_1324694_5 Surface antigen K07277 - - 0.000000000000000000000006148 103.0
YYD3_k127_1324694_6 Outer membrane protein (OmpH-like) K06142 - - 0.0000000000000003446 85.0
YYD3_k127_1326698_0 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000813 286.0
YYD3_k127_1326698_1 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000001117 183.0
YYD3_k127_1326698_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000001457 100.0
YYD3_k127_1329732_0 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 611.0
YYD3_k127_1329732_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 404.0
YYD3_k127_1329732_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000003358 89.0
YYD3_k127_1329732_3 Peptidase inhibitor I9 - - - 0.000000000001497 75.0
YYD3_k127_1329732_4 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family - - - 0.000000000004497 70.0
YYD3_k127_1329732_5 Belongs to the multicopper oxidase YfiH RL5 family K05810 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0071944 - 0.000000005398 60.0
YYD3_k127_1352430_0 Belongs to the glycosyl hydrolase 57 family K03406,K16149 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 377.0
YYD3_k127_1352430_1 Domain of unknown function (DUF3536) - - - 0.0000000000000000000000000000000000000000000000000000000000006194 218.0
YYD3_k127_1352430_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000001588 166.0
YYD3_k127_1362436_0 Glyoxalase bleomycin resistance protein dioxygenase K15975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 304.0
YYD3_k127_1362436_1 Phospholipase/Carboxylesterase K06999,K15975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001272 247.0
YYD3_k127_1364102_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 481.0
YYD3_k127_1364102_1 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000407 452.0
YYD3_k127_1364102_10 diguanylate cyclase K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000001225 220.0
YYD3_k127_1364102_11 - - - - 0.0000000000000000005197 94.0
YYD3_k127_1364102_2 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 413.0
YYD3_k127_1364102_3 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 348.0
YYD3_k127_1364102_4 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 323.0
YYD3_k127_1364102_5 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 291.0
YYD3_k127_1364102_6 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005669 272.0
YYD3_k127_1364102_7 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000138 271.0
YYD3_k127_1364102_8 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006034 252.0
YYD3_k127_1364102_9 Part of the ABC transporter FtsEX involved in K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000011 243.0
YYD3_k127_1366752_0 serine-type peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 514.0
YYD3_k127_1370339_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005982 537.0
YYD3_k127_1370339_1 Cys/Met metabolism PLP-dependent enzyme K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000602 476.0
YYD3_k127_1370339_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 341.0
YYD3_k127_1370339_3 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000001938 235.0
YYD3_k127_1370339_4 NmrA-like family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000299 208.0
YYD3_k127_1370339_5 TIGRFAM M6 family metalloprotease domain - - - 0.000000000000000000000000000000000000118 163.0
YYD3_k127_1370339_6 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000158 141.0
YYD3_k127_1370339_7 Copper binding proteins, plastocyanin/azurin family K02638 - - 0.00000000000000000000000000147 127.0
YYD3_k127_1370339_8 phosphatidate phosphatase activity K00901,K01096,K19302 - 2.7.1.107,3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.0000000000000000000000003963 121.0
YYD3_k127_1398019_0 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000001562 214.0
YYD3_k127_1398019_1 Glycosyl transferase family 2 K12984 - - 0.0000000000000000000000000000000000000000000000005575 187.0
YYD3_k127_1398019_2 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000007112 96.0
YYD3_k127_1398019_3 Outer membrane protein beta-barrel domain - - - 0.0000000000000001664 87.0
YYD3_k127_1398019_4 Glycosyltransferase Family 4 K12995 - 2.4.1.348 0.0000001623 53.0
YYD3_k127_1408703_0 4 iron, 4 sulfur cluster binding K03737 - 1.2.7.1 0.0 1615.0
YYD3_k127_1408703_1 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 3.406e-232 734.0
YYD3_k127_1408703_2 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 518.0
YYD3_k127_1408703_3 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 328.0
YYD3_k127_1408703_4 Fe-S cluster K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 301.0
YYD3_k127_1414702_0 tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007302 584.0
YYD3_k127_1423206_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 353.0
YYD3_k127_1423206_1 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001061 256.0
YYD3_k127_1423206_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000003299 228.0
YYD3_k127_1423206_3 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000001646 144.0
YYD3_k127_1423206_4 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000004479 104.0
YYD3_k127_1434656_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007904 392.0
YYD3_k127_1434656_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009166 395.0
YYD3_k127_1434656_2 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000009753 237.0
YYD3_k127_1434656_3 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000000001923 199.0
YYD3_k127_1434656_4 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000003984 184.0
YYD3_k127_1434656_5 FAD dependent oxidoreductase K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19 0.000000000000000000000000000000000008839 144.0
YYD3_k127_1434656_6 - - - - 0.00000000000000001021 96.0
YYD3_k127_1434656_7 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000001023 90.0
YYD3_k127_1434656_8 - - - - 0.0000000000000004759 87.0
YYD3_k127_1441223_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000003329 250.0
YYD3_k127_1441223_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000001726 137.0
YYD3_k127_1441223_2 Glycoside hydrolase - - - 0.0000000546 55.0
YYD3_k127_1441524_0 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000001214 211.0
YYD3_k127_1441524_1 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000858 184.0
YYD3_k127_1441524_2 Sporulation related domain - - - 0.0000000008425 70.0
YYD3_k127_1441524_3 Tryptophan halogenase - - - 0.00002976 46.0
YYD3_k127_1442950_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 487.0
YYD3_k127_1442950_1 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 468.0
YYD3_k127_1442950_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 369.0
YYD3_k127_1442950_3 COG0147 Anthranilate para-aminobenzoate synthases component I K01657,K13503 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 343.0
YYD3_k127_1442950_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 GO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 303.0
YYD3_k127_1442950_5 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 293.0
YYD3_k127_1442950_6 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000001478 200.0
YYD3_k127_1442950_7 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000002033 127.0
YYD3_k127_1445733_0 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K16055 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0033554,GO:0034637,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0050896,GO:0051716,GO:0070413,GO:0071704,GO:1901576 2.4.1.15,3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006484 548.0
YYD3_k127_1445733_1 Glycosyl hydrolases family 15 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 495.0
YYD3_k127_1445733_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.000006327 51.0
YYD3_k127_1448025_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009714 423.0
YYD3_k127_1448025_1 Threonine dehydratase K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 298.0
YYD3_k127_1448025_2 BON domain - - - 0.00000000002616 72.0
YYD3_k127_1448025_3 Beta-lactamase K17836 - 3.5.2.6 0.0004828 44.0
YYD3_k127_1448266_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000001264 246.0
YYD3_k127_1448266_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000003832 90.0
YYD3_k127_1451744_0 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 327.0
YYD3_k127_1451744_1 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 313.0
YYD3_k127_1451744_2 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 308.0
YYD3_k127_1451744_3 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000004255 273.0
YYD3_k127_1451744_4 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000001234 246.0
YYD3_k127_1451744_5 Regulates arginine biosynthesis genes K03402 - - 0.00000000000000000000000001124 123.0
YYD3_k127_1461954_1 Belongs to the heme-copper respiratory oxidase family - - - 0.00000000000001148 86.0
YYD3_k127_1461954_2 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.00002095 56.0
YYD3_k127_1474989_0 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000001213 99.0
YYD3_k127_1474989_1 - - - - 0.0002646 46.0
YYD3_k127_1475652_0 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 452.0
YYD3_k127_1475652_1 BAAT / Acyl-CoA thioester hydrolase C terminal K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005983 280.0
YYD3_k127_1477172_0 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 581.0
YYD3_k127_1484550_0 Belongs to the D-alanine--D-alanine ligase family K01921 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008716,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004914 384.0
YYD3_k127_1484550_1 Rhomboid family - - - 0.000002833 58.0
YYD3_k127_1487028_0 Winged helix-turn helix - - - 0.000000000000000000000000000000000000000000000000000000000000005505 225.0
YYD3_k127_1487028_1 DDE superfamily endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000725 205.0
YYD3_k127_1487875_0 AcrB/AcrD/AcrF family K07787,K15726 - - 6.369e-315 975.0
YYD3_k127_1492192_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009381 422.0
YYD3_k127_1492192_1 respiratory electron transport chain K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.00000000000000000000000000000000000000000000000006371 195.0
YYD3_k127_1492192_2 Hydrogenase maturation protease K03605 - - 0.00000000000001774 74.0
YYD3_k127_1493634_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 548.0
YYD3_k127_1493634_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005966 496.0
YYD3_k127_1493634_2 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000001565 268.0
YYD3_k127_1495316_0 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001258 280.0
YYD3_k127_1495316_1 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.00000000001545 71.0
YYD3_k127_1495316_2 Belongs to the UbiD family K03182 - 4.1.1.98 0.00003641 51.0
YYD3_k127_1502313_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008934 441.0
YYD3_k127_1502313_1 FAD linked oxidases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 354.0
YYD3_k127_1502313_2 Dihydrofolate reductase K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000001293 171.0
YYD3_k127_1502313_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000001667 91.0
YYD3_k127_1502313_4 Protein of unknown function DUF116 K09729 - - 0.00000000000001253 83.0
YYD3_k127_1505713_0 UPF0365 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 417.0
YYD3_k127_1505713_1 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 316.0
YYD3_k127_1505713_2 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000001267 227.0
YYD3_k127_1505713_3 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000005147 199.0
YYD3_k127_1509381_0 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 604.0
YYD3_k127_1509381_1 ATP dependent DNA ligase C terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 509.0
YYD3_k127_1509381_10 Pyridine nucleotide-disulphide oxidoreductase K05297 - 1.18.1.1 0.00000000000000000000000000000000000000000001483 174.0
YYD3_k127_1509381_11 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000003212 159.0
YYD3_k127_1509381_12 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.00000000000000000000000000000000000000008518 162.0
YYD3_k127_1509381_13 Negative regulatory protein YxlE - - - 0.000003879 54.0
YYD3_k127_1509381_2 PA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005695 383.0
YYD3_k127_1509381_3 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 379.0
YYD3_k127_1509381_4 abc transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 323.0
YYD3_k127_1509381_5 MafB19-like deaminase K01485 - 3.5.4.1 0.000000000000000000000000000000000000000000000000000000000000000000003095 240.0
YYD3_k127_1509381_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000008107 228.0
YYD3_k127_1509381_7 - - - - 0.00000000000000000000000000000000000000000000000000000004204 201.0
YYD3_k127_1509381_8 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000009547 198.0
YYD3_k127_1509381_9 ERAP1-like C-terminal domain K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000001018 174.0
YYD3_k127_1516663_0 FeoA - - - 1.99e-297 930.0
YYD3_k127_1516663_1 iron dependent repressor K03709 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002994 273.0
YYD3_k127_1516663_2 NUDIX domain - - - 0.0000000000000000000000000000000001024 142.0
YYD3_k127_1516663_3 DNA-binding transcription factor activity K21903 - - 0.00000000000000000000000000002123 121.0
YYD3_k127_1516663_4 cadmium-exporting ATPase K01534 - 3.6.3.3,3.6.3.5 0.0000000000000000000000006141 113.0
YYD3_k127_1516663_5 - - - - 0.000000000000000000000008685 106.0
YYD3_k127_1516663_6 Regulatory protein, FmdB family - - - 0.00000000002985 66.0
YYD3_k127_1518469_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 1.851e-258 806.0
YYD3_k127_1518469_1 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 334.0
YYD3_k127_1518469_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 309.0
YYD3_k127_1518469_3 peptidyl-tyrosine sulfation - - - 0.0000000000008935 82.0
YYD3_k127_1518469_4 Forkhead associated domain - - - 0.0000000000158 77.0
YYD3_k127_1522509_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 336.0
YYD3_k127_1522509_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000002102 281.0
YYD3_k127_1522509_2 Cell cycle protein K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002816 265.0
YYD3_k127_1522509_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000001686 224.0
YYD3_k127_1542547_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.569e-213 677.0
YYD3_k127_1542547_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 327.0
YYD3_k127_1542547_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005638 256.0
YYD3_k127_1542547_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000002735 239.0
YYD3_k127_1542547_4 Polysaccharide lyase family 4, domain II - - - 0.0000000000000000000000000000000000000000000000000000000000002785 220.0
YYD3_k127_1542547_5 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000101 193.0
YYD3_k127_1542547_6 Cytochrome c oxidase subunit III K02276,K02299 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 1.9.3.1 0.0000000000000000000000000000000000000000006267 169.0
YYD3_k127_1542547_7 - - - - 0.00000000000000000000003746 106.0
YYD3_k127_1542547_8 COG1622 Heme copper-type cytochrome quinol oxidases, subunit 2 K02275 - 1.9.3.1 0.000000000004516 73.0
YYD3_k127_1542547_9 - - - - 0.0000001336 58.0
YYD3_k127_1546625_0 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 609.0
YYD3_k127_1546625_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 448.0
YYD3_k127_1546625_2 2-phosphosulpholactate phosphatase K05979 - 3.1.3.71 0.000000000000000000000000000000000000000000001461 175.0
YYD3_k127_1550980_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 3.563e-237 749.0
YYD3_k127_1550980_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 488.0
YYD3_k127_1550980_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 302.0
YYD3_k127_1550980_3 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000002884 261.0
YYD3_k127_1550980_4 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000005875 256.0
YYD3_k127_1550980_5 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000009436 258.0
YYD3_k127_1550980_6 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000001806 147.0
YYD3_k127_1550980_7 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000002328 65.0
YYD3_k127_1550980_8 efflux transmembrane transporter activity - - - 0.00000002983 58.0
YYD3_k127_1551357_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 454.0
YYD3_k127_1551357_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003307 282.0
YYD3_k127_1551357_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000002076 155.0
YYD3_k127_1551357_3 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.00000000000000002674 89.0
YYD3_k127_1551357_4 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00003872 46.0
YYD3_k127_15629_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 575.0
YYD3_k127_15629_1 HlyD family secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 535.0
YYD3_k127_15629_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006168 456.0
YYD3_k127_15629_3 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 310.0
YYD3_k127_15629_5 - - - - 0.0000002181 55.0
YYD3_k127_157104_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 569.0
YYD3_k127_157104_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 480.0
YYD3_k127_157104_2 AMIN domain K02666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 448.0
YYD3_k127_157104_3 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 431.0
YYD3_k127_157104_4 Fimbrial assembly protein (PilN) - - - 0.000000000000000000000000000000000000007978 154.0
YYD3_k127_157104_5 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.0000000000000000000000000000000000006719 145.0
YYD3_k127_157104_6 - - - - 0.000000000000000000000005179 111.0
YYD3_k127_157104_7 - - - - 0.00000000000000001339 89.0
YYD3_k127_157104_8 assembly protein PilO K02664 - - 0.00005604 53.0
YYD3_k127_1578430_0 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000002469 244.0
YYD3_k127_1578430_1 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000002535 162.0
YYD3_k127_1582206_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 461.0
YYD3_k127_1582206_1 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000005539 146.0
YYD3_k127_1582206_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000006536 54.0
YYD3_k127_1587737_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 506.0
YYD3_k127_1587737_1 Cupin domain - - - 0.00000000000009435 75.0
YYD3_k127_1588058_0 OmpA family - - - 0.000000000000000000000000000000000000000000000000000000000000000003218 242.0
YYD3_k127_1588058_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000005893 198.0
YYD3_k127_1588058_2 Bacterial transcriptional activator domain - - - 0.000001858 54.0
YYD3_k127_1592930_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000001597 199.0
YYD3_k127_1592930_1 Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms K07027 - - 0.0000000000000000000001249 110.0
YYD3_k127_1597682_0 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 371.0
YYD3_k127_1597682_1 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000001149 156.0
YYD3_k127_1597682_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000006786 95.0
YYD3_k127_1628249_0 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 604.0
YYD3_k127_1628249_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000008812 154.0
YYD3_k127_1628249_2 WD40 domain protein beta Propeller K03641 - - 0.0000000000000000000000000001722 126.0
YYD3_k127_1628249_3 ketosteroid isomerase - - - 0.00000000000000000000000009439 108.0
YYD3_k127_1631876_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 9.311e-195 630.0
YYD3_k127_1631876_1 PFAM V-type ATPase 116 kDa K02123 - - 0.0000000000000000000000000000000000000000000000000000000614 205.0
YYD3_k127_1631876_2 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000004663 85.0
YYD3_k127_1631876_3 subunit (C K02119 - - 0.00000000000008214 83.0
YYD3_k127_1631876_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 0.000000006416 65.0
YYD3_k127_1631876_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.000002298 56.0
YYD3_k127_1631876_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.0002404 51.0
YYD3_k127_1639419_0 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 421.0
YYD3_k127_1639419_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 329.0
YYD3_k127_1639419_2 negative regulation of phosphate transmembrane transport K02039 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.000000000000000000000000000000000000000000000000000000000000000000000933 244.0
YYD3_k127_1639419_3 TAP-like protein - - - 0.00001094 49.0
YYD3_k127_1644152_0 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 466.0
YYD3_k127_1644152_1 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.000000000000000000000000000000000000000000000005786 184.0
YYD3_k127_1644152_2 Thioredoxin - - - 0.000000000000000000000000000000002095 136.0
YYD3_k127_1644152_3 Surface antigen - - - 0.0000007346 55.0
YYD3_k127_1651103_0 AcrB/AcrD/AcrF family K03296 - - 1.228e-204 652.0
YYD3_k127_1651103_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000009881 218.0
YYD3_k127_1680873_0 PFAM Inositol monophosphatase K01092,K05602 - 3.1.3.15,3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000001131 233.0
YYD3_k127_1680873_1 YHS domain protein - - - 0.0000000000000000000000000000004436 129.0
YYD3_k127_1680873_2 Threonyl alanyl tRNA synthetase SAD K01872 - 6.1.1.7 0.0000000000000000000000000001331 121.0
YYD3_k127_1735155_0 peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000004133 227.0
YYD3_k127_1735155_1 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000001995 177.0
YYD3_k127_1737849_0 3-beta hydroxysteroid dehydrogenase/isomerase family K08678 - 4.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 490.0
YYD3_k127_1737849_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006428 473.0
YYD3_k127_1737849_2 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002258 253.0
YYD3_k127_1737849_3 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008830,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000001565 225.0
YYD3_k127_1737849_4 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.00000000000000001315 92.0
YYD3_k127_1739354_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1205.0
YYD3_k127_1739354_1 cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000003881 224.0
YYD3_k127_1739354_2 Hexapeptide repeat of succinyl-transferase K13018 - 2.3.1.201 0.00000000000000000000000001984 109.0
YYD3_k127_1745356_0 nuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088 385.0
YYD3_k127_1745356_1 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01667,K01668 - 4.1.99.1,4.1.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 317.0
YYD3_k127_1745356_2 - - - - 0.00000000000000000000000000000000000000000000000000000006331 209.0
YYD3_k127_1760851_0 Transglycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 322.0
YYD3_k127_1760851_1 Protein of unknown function (DUF1203) - - - 0.000000000000000000000001903 107.0
YYD3_k127_1761793_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 4.149e-236 740.0
YYD3_k127_1761793_1 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000002589 227.0
YYD3_k127_1761793_2 phosphoribosyltransferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000009224 201.0
YYD3_k127_1761793_3 translation release factor activity K03265 GO:0001666,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009628,GO:0016020,GO:0030312,GO:0036293,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070482,GO:0071944 - 0.0000000000000000000000000000000002235 149.0
YYD3_k127_1768354_0 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000005703 214.0
YYD3_k127_1768354_1 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000000005735 226.0
YYD3_k127_1768354_2 NUDIX domain - - - 0.00000000000000000000000000000000000008642 156.0
YYD3_k127_1768354_3 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000251 147.0
YYD3_k127_1781232_0 amine dehydrogenase activity K17285 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 491.0
YYD3_k127_1781232_1 Belongs to the peptidase S41A family - - - 0.000000000000000000000000000000000000000000009224 180.0
YYD3_k127_1781232_2 Alternative oxidase K17893 - 1.10.3.11 0.000003196 50.0
YYD3_k127_1788603_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 535.0
YYD3_k127_1794784_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000001532 98.0
YYD3_k127_1794784_2 - - - - 0.00000000000001208 78.0
YYD3_k127_1794784_3 Protein kinase domain K12132 - 2.7.11.1 0.000005545 57.0
YYD3_k127_1797154_0 4Fe-4S dicluster domain K00184 - - 2.903e-241 779.0
YYD3_k127_1797154_1 Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 541.0
YYD3_k127_1797154_2 Pfam Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000002373 207.0
YYD3_k127_1797154_3 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000002142 128.0
YYD3_k127_1797154_4 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000449 123.0
YYD3_k127_1797154_5 SpoU rRNA Methylase family K02533,K15396 - 2.1.1.200 0.0000000000000000000000000137 112.0
YYD3_k127_1797154_6 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000007044 105.0
YYD3_k127_1806940_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 593.0
YYD3_k127_1806940_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 312.0
YYD3_k127_1814511_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002056 273.0
YYD3_k127_1814511_1 outer membrane efflux protein - - - 0.000000000005988 79.0
YYD3_k127_1836506_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 2.923e-225 709.0
YYD3_k127_1836506_1 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 421.0
YYD3_k127_1836506_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000002037 188.0
YYD3_k127_1836506_3 cytochrome c biogenesis protein K04084 - 1.8.1.8 0.0000000000000000000000000000005135 139.0
YYD3_k127_1839262_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 593.0
YYD3_k127_1839262_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000001127 218.0
YYD3_k127_1839262_2 Peptidase M50 - - - 0.0000000000000000000000000000000000002232 152.0
YYD3_k127_1839262_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000001837 126.0
YYD3_k127_1845743_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 540.0
YYD3_k127_1845743_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008976 309.0
YYD3_k127_1861738_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 316.0
YYD3_k127_1861738_1 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 310.0
YYD3_k127_1861738_2 Acyl transferase domain K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 293.0
YYD3_k127_1861738_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000001035 248.0
YYD3_k127_1861738_4 NDK K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000003633 176.0
YYD3_k127_1861738_5 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000001316 123.0
YYD3_k127_1861738_6 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000001391 111.0
YYD3_k127_1861738_7 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000002002 104.0
YYD3_k127_1861738_8 Ribosomal L32p protein family K02911 - - 0.0000000000000006051 79.0
YYD3_k127_1864750_0 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 329.0
YYD3_k127_1884595_0 Belongs to the HpcH HpaI aldolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 485.0
YYD3_k127_1884595_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006298 472.0
YYD3_k127_1884595_2 Pfam:DUF955 K07110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 457.0
YYD3_k127_1884595_3 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004732 278.0
YYD3_k127_1884595_4 Catalyzes the oxidation of uric acid to 5- hydroxyisourate, which is further processed to form (S)-allantoin K00365 - 1.7.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000001778 252.0
YYD3_k127_1884595_5 SWI complex, BAF60b domains - - - 0.00000000000000000000000000002181 121.0
YYD3_k127_19058_0 Glutamine synthetase type III K01915 - 6.3.1.2 3.212e-257 833.0
YYD3_k127_19058_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004452 325.0
YYD3_k127_19058_2 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.00000000000000000000000000000000000000000000000341 194.0
YYD3_k127_19058_3 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000003238 120.0
YYD3_k127_19058_4 Belongs to the heme-copper respiratory oxidase family - - - 0.0000000001231 67.0
YYD3_k127_1928980_0 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000004872 246.0
YYD3_k127_1928980_1 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000002141 79.0
YYD3_k127_1937293_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 432.0
YYD3_k127_1937293_1 small subunit K06282 - 1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007008 408.0
YYD3_k127_1939527_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000001533 117.0
YYD3_k127_1962373_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 2.219e-257 806.0
YYD3_k127_1962373_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007269 324.0
YYD3_k127_1962373_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000008899 171.0
YYD3_k127_1962373_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.00000000000000000000000000000000000000000002218 163.0
YYD3_k127_1962373_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000009249 158.0
YYD3_k127_1982404_0 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 426.0
YYD3_k127_1982404_1 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 364.0
YYD3_k127_1982404_2 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.00000000000000000000002137 111.0
YYD3_k127_1996107_0 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000002176 254.0
YYD3_k127_2012672_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 353.0
YYD3_k127_2012672_1 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000001503 170.0
YYD3_k127_2012672_2 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000001984 109.0
YYD3_k127_2020270_0 PFAM blue (type 1) copper domain protein K00368,K02638 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005078 281.0
YYD3_k127_2020270_1 PFAM blue (type 1) copper domain protein - - - 0.00000000000001304 80.0
YYD3_k127_2033432_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003326 278.0
YYD3_k127_2033432_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000001334 237.0
YYD3_k127_2033432_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000158 178.0
YYD3_k127_2033432_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000002793 124.0
YYD3_k127_2033432_4 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000001745 115.0
YYD3_k127_2041151_0 GMC oxidoreductase - - - 3.09e-231 728.0
YYD3_k127_2041151_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052,K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 299.0
YYD3_k127_2041151_2 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000003371 155.0
YYD3_k127_2041151_4 Domain of unknown function (DUF1990) - - - 0.000000002845 59.0
YYD3_k127_2042528_0 PFAM Integrase catalytic region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000212 245.0
YYD3_k127_2042528_1 CAAX protease self-immunity - - - 0.0000000000000000000000000000000000000000000000000005292 192.0
YYD3_k127_2042528_2 Transposase K07483 - - 0.0000000000000003634 82.0
YYD3_k127_2044710_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000003287 237.0
YYD3_k127_2044710_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000001465 220.0
YYD3_k127_2044710_2 Enolase, N-terminal domain K01689 GO:0001968,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043236,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050840,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 4.2.1.11 0.000000000000000000000000000000000000000000000007939 173.0
YYD3_k127_2044710_3 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000001925 164.0
YYD3_k127_2051130_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.364e-291 925.0
YYD3_k127_2051130_1 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 7.966e-249 784.0
YYD3_k127_2051130_10 Tetratricopeptide repeat - - - 0.0000000000007489 78.0
YYD3_k127_2051130_11 PFAM transglutaminase domain protein - - - 0.0000000001102 74.0
YYD3_k127_2051130_12 Double zinc ribbon - - - 0.000009176 56.0
YYD3_k127_2051130_2 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 499.0
YYD3_k127_2051130_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 356.0
YYD3_k127_2051130_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000008654 154.0
YYD3_k127_2051130_5 heat shock protein binding - - - 0.0000000000000000000000001974 106.0
YYD3_k127_2051130_6 - - - - 0.000000000000000000000001207 110.0
YYD3_k127_2051130_7 subunit of a heme lyase K02200 - - 0.000000000000000000000002561 118.0
YYD3_k127_2051130_8 - - - - 0.000000000000000000000003018 118.0
YYD3_k127_2051130_9 - - - - 0.000000000000000000000478 111.0
YYD3_k127_2051992_0 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009817 446.0
YYD3_k127_2051992_1 Coenzyme A transferase K01029 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009242 300.0
YYD3_k127_2051992_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000006658 139.0
YYD3_k127_2051992_3 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.00000000000000000000000001165 120.0
YYD3_k127_205413_0 Domain of unknown function (DUF4388) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 432.0
YYD3_k127_205413_1 Small GTP-binding protein K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000862 267.0
YYD3_k127_205413_2 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.000000000000000000000000000000227 143.0
YYD3_k127_205413_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837 - 0.00000000000000000000007087 115.0
YYD3_k127_205413_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837 - 0.00000000000000000000009376 114.0
YYD3_k127_205413_5 Roadblock/LC7 domain - - - 0.00002731 56.0
YYD3_k127_205726_0 Insulinase (Peptidase family M16) K07263 - - 8.847e-274 876.0
YYD3_k127_205726_1 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006365 448.0
YYD3_k127_205726_2 peptidase activity K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007028 387.0
YYD3_k127_205726_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003283 257.0
YYD3_k127_205726_4 Peptidase dimerisation domain K12941 - - 0.000000000000000000000000000000000000000000000000000006706 191.0
YYD3_k127_205726_5 DinB superfamily - - - 0.00000000000000000000000000000000000000000000004253 177.0
YYD3_k127_205726_6 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000001426 143.0
YYD3_k127_2090442_0 Bacterial regulatory protein, Fis family - - - 2.017e-205 655.0
YYD3_k127_2090442_1 Chain length determinant protein K16554 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 586.0
YYD3_k127_2090442_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001062 258.0
YYD3_k127_2090442_3 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000002268 180.0
YYD3_k127_2090442_4 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.000000000000000000002916 106.0
YYD3_k127_209579_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 1.757e-241 751.0
YYD3_k127_209579_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002546 279.0
YYD3_k127_2098426_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 340.0
YYD3_k127_2098426_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009965 314.0
YYD3_k127_2098426_2 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004425 288.0
YYD3_k127_2098426_3 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002242 269.0
YYD3_k127_2098426_4 Glutathione peroxidase - - - 0.00000000000000000000000000000000000002613 151.0
YYD3_k127_2098426_5 thiamine diphosphate biosynthetic process K03149,K03154 GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.00000000000004069 74.0
YYD3_k127_2098426_6 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.0000000000006306 81.0
YYD3_k127_2098884_0 WHG domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004928 228.0
YYD3_k127_2098884_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000005688 172.0
YYD3_k127_2104032_0 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000002489 216.0
YYD3_k127_2104032_1 Protein of unknown function (DUF3224) - - - 0.00000000000000000000000000000001076 131.0
YYD3_k127_2104032_2 amine dehydrogenase activity - - - 0.00000000000002368 83.0
YYD3_k127_2107836_0 PFAM Sodium calcium exchanger protein K07300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 326.0
YYD3_k127_2107836_1 Diguanylate cyclase, GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006759 317.0
YYD3_k127_2107836_2 - - - - 0.0000000004294 66.0
YYD3_k127_2113729_0 Serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000007664 242.0
YYD3_k127_2113729_1 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000000000002448 222.0
YYD3_k127_2113729_2 PFAM Rhomboid family protein - - - 0.0000000000000000000000000000000005291 141.0
YYD3_k127_2123007_0 Belongs to the transketolase family K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 509.0
YYD3_k127_2123007_1 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 479.0
YYD3_k127_2123007_10 - - - - 0.0000000000000000000000000269 113.0
YYD3_k127_2123007_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 408.0
YYD3_k127_2123007_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 322.0
YYD3_k127_2123007_4 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003758 298.0
YYD3_k127_2123007_5 ATPase-coupled sulfate transmembrane transporter activity K15496 - - 0.00000000000000000000000000000000000000000000000000000000000000000004689 241.0
YYD3_k127_2123007_6 SpoU rRNA Methylase family K02533,K15396 - 2.1.1.200 0.000000000000000000000000000000000000000000000000000000000000002404 228.0
YYD3_k127_2123007_7 transport systems ATPase components K02062 - - 0.0000000000000000000000000000000000000000000000000000000006022 217.0
YYD3_k127_2123007_8 Iron-storage protein K02217 - 1.16.3.2 0.00000000000000000000000000000000000000000000001252 179.0
YYD3_k127_2123007_9 PFAM Bacterial regulatory proteins, tetR family K09017,K22295 - - 0.00000000000000000000000000000227 132.0
YYD3_k127_2125012_0 CHAT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 444.0
YYD3_k127_2128074_0 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 5.177e-214 677.0
YYD3_k127_2128074_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 465.0
YYD3_k127_2128074_2 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000001391 235.0
YYD3_k127_2128074_3 SecD/SecF GG Motif K03074 - - 0.000000000000000000000000000000000000000000000000000000000000001946 244.0
YYD3_k127_2128074_4 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000002878 94.0
YYD3_k127_21289_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000005593 206.0
YYD3_k127_2133751_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1156.0
YYD3_k127_2133751_1 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000001074 170.0
YYD3_k127_2133751_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000000000000000000000000001316 116.0
YYD3_k127_216537_0 ABC1 family K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 556.0
YYD3_k127_216537_1 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 419.0
YYD3_k127_216537_2 SnoaL-like domain - - - 0.0000000000000000000000000000000001527 139.0
YYD3_k127_2168111_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000006084 252.0
YYD3_k127_2168111_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000008965 240.0
YYD3_k127_2168111_2 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000004816 195.0
YYD3_k127_2168111_3 - - - - 0.000000000002311 73.0
YYD3_k127_2168111_4 protein kinase activity K12132 - 2.7.11.1 0.000000003066 66.0
YYD3_k127_2168111_5 Cellulose Binding Domain Type IV - - - 0.000003821 59.0
YYD3_k127_2177148_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 453.0
YYD3_k127_2177148_1 PAS domain K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 357.0
YYD3_k127_2177148_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000008919 172.0
YYD3_k127_2177148_3 S4 RNA-binding domain K04762 - - 0.0000000000000000000000000000000000000324 147.0
YYD3_k127_2196111_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008262 425.0
YYD3_k127_2196111_1 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005403 311.0
YYD3_k127_2212051_0 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 317.0
YYD3_k127_2213246_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 452.0
YYD3_k127_2213246_1 Aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000009513 149.0
YYD3_k127_2213246_2 - - - - 0.0000000000000000000003171 109.0
YYD3_k127_2224334_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007195 514.0
YYD3_k127_2224334_1 MviN-like protein K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 393.0
YYD3_k127_2259124_0 Beta-eliminating lyase K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 547.0
YYD3_k127_2259124_1 phosphoribosylamine-glycine ligase activity K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000000000001047 214.0
YYD3_k127_2259124_2 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0008652,GO:0008743,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0030145,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046870,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 1.1.1.103 0.0002356 43.0
YYD3_k127_2268030_0 Predicted membrane protein (DUF2231) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000785 271.0
YYD3_k127_2268030_1 Glycosyl transferase, family 2 - - - 0.000000000000000000000000001025 124.0
YYD3_k127_2289790_0 Protein of unknown function (DUF445) - - - 0.000000000000006448 88.0
YYD3_k127_2289790_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000001942 56.0
YYD3_k127_2305147_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 2.001e-281 885.0
YYD3_k127_2305147_1 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 554.0
YYD3_k127_2305147_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 533.0
YYD3_k127_2305147_3 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 419.0
YYD3_k127_2305147_4 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 404.0
YYD3_k127_2305147_5 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000004514 260.0
YYD3_k127_2305147_6 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000001462 232.0
YYD3_k127_2305147_7 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000007975 220.0
YYD3_k127_2305147_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000001547 87.0
YYD3_k127_2305147_9 Transcription factor zinc-finger K09981 - - 0.0000000000000000173 87.0
YYD3_k127_2309654_0 TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 415.0
YYD3_k127_2309654_1 TonB dependent receptor - - - 0.0000000000000000000000000000000000008361 142.0
YYD3_k127_2313221_0 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 370.0
YYD3_k127_2313221_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 321.0
YYD3_k127_2313221_2 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000002021 241.0
YYD3_k127_2313221_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000002289 233.0
YYD3_k127_2313221_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000002052 199.0
YYD3_k127_2313221_5 Biotin/lipoate A/B protein ligase family K03800 - 6.3.1.20 0.000000000000000000000000000000000000000001416 165.0
YYD3_k127_2313221_6 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000001041 141.0
YYD3_k127_2314691_0 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000006938 169.0
YYD3_k127_2314691_1 Aerotolerance regulator N-terminal - - - 0.000000000001699 78.0
YYD3_k127_2333002_0 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001313 244.0
YYD3_k127_2333002_1 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000001012 149.0
YYD3_k127_2333002_2 Protein of unknown function (DUF983) - - - 0.0000000000000821 74.0
YYD3_k127_2333002_3 Dual specificity phosphatase, catalytic domain - - - 0.00005108 51.0
YYD3_k127_2341776_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009475 407.0
YYD3_k127_2341776_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.00000000000000000000000000000000000000000000000000000000001987 212.0
YYD3_k127_2341776_2 Involved in the tonB-independent uptake of proteins K01730,K03641 - 4.2.2.6 0.00004545 51.0
YYD3_k127_234247_0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 354.0
YYD3_k127_234247_1 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000006911 192.0
YYD3_k127_234247_2 Thioredoxin - - - 0.0008703 43.0
YYD3_k127_2343930_0 TonB-dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 561.0
YYD3_k127_2346641_0 Cytochrome c K07243 - - 0.000000000000000000000000000000000000000000000000000006514 208.0
YYD3_k127_2346641_1 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000005997 179.0
YYD3_k127_2346641_2 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000002855 96.0
YYD3_k127_2381203_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 323.0
YYD3_k127_2381203_1 - - - - 0.00000000000000000000000000000000000000000000000000003246 195.0
YYD3_k127_2381203_2 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000003709 133.0
YYD3_k127_2381203_3 - - - - 0.000000000000000000000000009297 115.0
YYD3_k127_2381203_4 Sigma factor PP2C-like phosphatases - - - 0.000000000000000000008013 98.0
YYD3_k127_2387589_0 PLD-like domain K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004614 353.0
YYD3_k127_2387589_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000001283 242.0
YYD3_k127_2387589_2 Peptidyl-prolyl cis-trans isomerase K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000004252 196.0
YYD3_k127_2387589_3 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000000001795 167.0
YYD3_k127_2387589_4 - - - - 0.00000000000000000001114 98.0
YYD3_k127_2387589_5 Protein of unknown function, DUF255 K06888 - - 0.000002907 54.0
YYD3_k127_2400599_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 375.0
YYD3_k127_2400599_1 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002734 282.0
YYD3_k127_2400599_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000001365 214.0
YYD3_k127_2400599_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000002137 81.0
YYD3_k127_2410984_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000001303 151.0
YYD3_k127_2410984_1 VIT family - - - 0.000000000000000000002689 99.0
YYD3_k127_2410984_2 Peptidase s1 and s6 chymotrypsin hap K08372 - - 0.000000007473 65.0
YYD3_k127_2418216_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 2.26e-287 899.0
YYD3_k127_2418216_1 involved in lipopolysaccharide synthesis - - - 0.000002799 53.0
YYD3_k127_2420692_0 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006742 478.0
YYD3_k127_2420692_1 Bacterial regulatory protein, Fis family - - - 0.0000002778 52.0
YYD3_k127_2443461_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0 1509.0
YYD3_k127_2443461_1 - - - - 0.000000000000000000000000000000000000000000000005277 181.0
YYD3_k127_2443461_2 TraB family K09973 - - 0.00000000000000000000000000000000000000000000001392 187.0
YYD3_k127_2448603_0 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000004963 164.0
YYD3_k127_2448603_1 ABC-2 family transporter protein - - - 0.00000000000000000000000000166 125.0
YYD3_k127_2455549_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001279 274.0
YYD3_k127_2455549_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000005445 248.0
YYD3_k127_2455549_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01450,K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.31,3.5.1.88 0.00000000000000000000000000000000000000000003792 166.0
YYD3_k127_2455549_3 Preprotein translocase subunit K03210 - - 0.0000000000000000006181 90.0
YYD3_k127_2455981_0 Heat shock 70 kDa protein K04043 - - 4.137e-212 666.0
YYD3_k127_2455981_1 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 394.0
YYD3_k127_2464200_0 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008085 369.0
YYD3_k127_2464200_1 PspA/IM30 family K03969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006 269.0
YYD3_k127_2464200_2 - - - - 0.00000000000000000000000000000000001064 141.0
YYD3_k127_2465856_0 MobA-like NTP transferase domain - - - 0.0000000000000000000000000000000000000001438 161.0
YYD3_k127_2465856_1 methyltransferase activity - - - 0.0000000000000000000000000000000000001046 150.0
YYD3_k127_2465856_2 DinB family - - - 0.000000000000000001351 86.0
YYD3_k127_2465856_3 Cupin 2, conserved barrel domain protein - - - 0.00001612 52.0
YYD3_k127_2467962_0 NAD synthase K01916 - 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008748 527.0
YYD3_k127_2467962_1 Thioesterase superfamily - - - 0.000000000000000000000000000005322 124.0
YYD3_k127_2467962_2 Patatin-like phospholipase K07001 - - 0.0000000000001373 82.0
YYD3_k127_2468509_0 - - - - 0.0000000000000000000000000000000000000000000000000005156 195.0
YYD3_k127_2468509_1 Organic Anion Transporter Polypeptide (OATP) family - - - 0.0000000000000000000005279 105.0
YYD3_k127_2468509_2 Winged helix DNA-binding domain - - - 0.0000000002171 64.0
YYD3_k127_2470518_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 1.311e-209 658.0
YYD3_k127_2470518_1 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.00000000000000000000000000000000007343 141.0
YYD3_k127_2473375_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002358 270.0
YYD3_k127_2473375_1 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000533 246.0
YYD3_k127_2499011_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 568.0
YYD3_k127_2499011_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 511.0
YYD3_k127_2499011_2 Peptidase family S58 - - - 0.000000000000000512 79.0
YYD3_k127_2499011_3 DinB superfamily - - - 0.0002609 48.0
YYD3_k127_2530376_0 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000001108 153.0
YYD3_k127_2533274_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 431.0
YYD3_k127_2533274_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 391.0
YYD3_k127_2533274_2 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006194 354.0
YYD3_k127_2533274_3 protoporphyrinogen oxidase activity K01854 - 5.4.99.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 323.0
YYD3_k127_2535496_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 350.0
YYD3_k127_2535496_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004137 281.0
YYD3_k127_2542667_0 glycosyl transferase group 1 K13668 - 2.4.1.346 0.0000000000000000000000000000000000000000000000000000885 201.0
YYD3_k127_2542667_1 4Fe-4S single cluster domain of Ferredoxin I - - - 0.0005558 48.0
YYD3_k127_2552091_0 cellulase activity - - - 7.763e-202 649.0
YYD3_k127_2552091_1 PFAM Cys Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 503.0
YYD3_k127_2552091_2 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009661 430.0
YYD3_k127_2552091_3 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000002005 223.0
YYD3_k127_2552091_4 PFAM SPFH domain Band 7 family - - - 0.0004101 50.0
YYD3_k127_2560973_0 Arginase family K01476 - 3.5.3.1 0.000000000000000000000000000000000000000000000000000000000008719 218.0
YYD3_k127_2560973_1 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000208 123.0
YYD3_k127_2560973_2 Putative stress-induced transcription regulator - - - 0.000000000000000000000001506 112.0
YYD3_k127_2560973_3 Peptidase family M48 - - - 0.00000000005174 73.0
YYD3_k127_2566538_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000002432 198.0
YYD3_k127_2566538_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000006536 54.0
YYD3_k127_2588849_0 xanthine dehydrogenase activity - - - 4.718e-320 995.0
YYD3_k127_2588849_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 615.0
YYD3_k127_2588849_10 WD40-like Beta Propeller Repeat - - - 0.000000000000000002767 97.0
YYD3_k127_2588849_11 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00001818 54.0
YYD3_k127_2588849_2 Amidohydrolase family K01466 - 3.5.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 483.0
YYD3_k127_2588849_3 Belongs to the allantoicase family K01477 - 3.5.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 394.0
YYD3_k127_2588849_4 CO dehydrogenase flavoprotein C-terminal domain K13479 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003582 332.0
YYD3_k127_2588849_5 Short chain fatty acid transporter K02106 - - 0.00000000000000000000000000000000000000000000000000000000000003927 231.0
YYD3_k127_2588849_6 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000002204 169.0
YYD3_k127_2588849_7 Transthyretin K07127 - 3.5.2.17 0.000000000000000000000000000000001893 134.0
YYD3_k127_2588849_8 allantoin biosynthetic process K01477,K16840 - 3.5.3.4,4.1.1.97 0.000000000000000000000000000005456 133.0
YYD3_k127_2588849_9 Catalyzes the oxidation of uric acid to 5- hydroxyisourate, which is further processed to form (S)-allantoin K00365 - 1.7.3.3 0.00000000000000000008943 94.0
YYD3_k127_2591264_0 amine dehydrogenase activity K17285 - - 2.483e-259 808.0
YYD3_k127_2591264_1 nitrite reductase [NAD(P)H] activity K00493,K07408,K15762 - 1.14.14.1 2.87e-225 713.0
YYD3_k127_2591264_2 Putative peptidoglycan binding domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 334.0
YYD3_k127_2591264_3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008267 303.0
YYD3_k127_2591264_4 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000003568 256.0
YYD3_k127_2591264_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000935 231.0
YYD3_k127_2591264_6 PFAM Kelch repeat type 1 K03529 - - 0.00000000000000000000000000000000000000000000000000004004 199.0
YYD3_k127_2591264_7 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000000002242 186.0
YYD3_k127_2591264_8 ArsC family - - - 0.00000000000000000000000000000000000000001251 155.0
YYD3_k127_2591264_9 AP2 domain - - - 0.00000002085 59.0
YYD3_k127_2592215_0 penicillin binding K05367 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 517.0
YYD3_k127_2592215_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 320.0
YYD3_k127_2592215_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000001727 192.0
YYD3_k127_2592215_3 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000008828 58.0
YYD3_k127_2600000_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 420.0
YYD3_k127_2600000_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000001504 231.0
YYD3_k127_2600000_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000007911 227.0
YYD3_k127_2600000_3 S4 RNA-binding domain K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000007222 215.0
YYD3_k127_2600000_4 Zinc finger domain - - - 0.0000000007375 65.0
YYD3_k127_2600000_5 Binds directly to 16S ribosomal RNA K02968 - - 0.000000003471 62.0
YYD3_k127_2614636_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 2.368e-263 836.0
YYD3_k127_2614636_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002185 286.0
YYD3_k127_2614636_2 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000001405 205.0
YYD3_k127_2614636_3 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000000000000000000000000000000000003886 199.0
YYD3_k127_2614636_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000004941 159.0
YYD3_k127_2614636_5 Histidine Phosphotransfer domain K03407 - 2.7.13.3 0.0000000000000000000000000006326 125.0
YYD3_k127_2614636_6 chemotaxis K02659,K03408 - - 0.00000000001785 71.0
YYD3_k127_2614991_0 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 327.0
YYD3_k127_2614991_1 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000001721 68.0
YYD3_k127_2614991_2 LytTr DNA-binding domain - - - 0.00001734 49.0
YYD3_k127_2617293_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008082 381.0
YYD3_k127_2623408_0 Protein involved in cellulose biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 296.0
YYD3_k127_2623408_1 ATP-grasp - - - 0.000000000000000000000000000000000000000000000000000000000000000005341 252.0
YYD3_k127_2623408_2 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000004919 215.0
YYD3_k127_2623408_3 polysaccharide deacetylase - - - 0.00000000000000000000003331 116.0
YYD3_k127_2623408_4 Histidine kinase - - - 0.000003214 49.0
YYD3_k127_2623408_5 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.00007828 46.0
YYD3_k127_2629335_0 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 392.0
YYD3_k127_2629335_1 Peptidase m28 - - - 0.00000000008652 64.0
YYD3_k127_2636946_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004282 400.0
YYD3_k127_2636946_1 Helix-hairpin-helix motif K02337 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 381.0
YYD3_k127_2636946_2 PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007419 313.0
YYD3_k127_2636946_3 tRNA synthetases class I (M) K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000001695 175.0
YYD3_k127_2638007_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 434.0
YYD3_k127_2638007_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000005294 231.0
YYD3_k127_2638007_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000007601 117.0
YYD3_k127_2638007_3 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.00000000000000483 76.0
YYD3_k127_2638007_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000179 68.0
YYD3_k127_2638007_5 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000006677 70.0
YYD3_k127_2638007_6 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.0000441 51.0
YYD3_k127_2657454_0 methylisocitrate lyase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 293.0
YYD3_k127_2657454_1 AlkA N-terminal domain K13529 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000009255 235.0
YYD3_k127_2658987_0 Amidohydrolase family K06015 - 3.5.1.81 4.579e-206 658.0
YYD3_k127_2658987_1 Peptidase dimerisation domain K01439,K05831 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000006579 223.0
YYD3_k127_2658987_2 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000006496 161.0
YYD3_k127_2658987_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000003236 138.0
YYD3_k127_2665926_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 383.0
YYD3_k127_2685144_0 tRNA synthetases class I (M) K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 556.0
YYD3_k127_2687731_0 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000001232 212.0
YYD3_k127_2687731_1 Peptidase family M23 K21472 - - 0.00000000000000000000001409 109.0
YYD3_k127_2687731_2 protein conserved in bacteria - - - 0.0000000000000000000009769 101.0
YYD3_k127_2687731_3 Prolyl oligopeptidase family - - - 0.0000000000000003413 81.0
YYD3_k127_2696814_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 424.0
YYD3_k127_2696814_1 endonuclease activity - - - 0.00000000000000000000000000000000001143 139.0
YYD3_k127_2699879_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 539.0
YYD3_k127_2699879_1 Acyl-coa dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 536.0
YYD3_k127_2699879_2 Aminoglycoside phosphotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005944 376.0
YYD3_k127_2699879_3 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 332.0
YYD3_k127_2699879_4 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000007899 186.0
YYD3_k127_2699879_5 membrane - - - 0.0000000000000000000000000001963 125.0
YYD3_k127_2699879_6 Domain of Unknown Function (DUF1080) - - - 0.0000000000003496 76.0
YYD3_k127_2705430_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 294.0
YYD3_k127_2705430_1 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000002834 139.0
YYD3_k127_2705430_2 LysE type translocator - - - 0.0000000000000000000000000000000008978 136.0
YYD3_k127_2710361_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000001247 102.0
YYD3_k127_2710361_1 - - - - 0.000000000000000000000316 104.0
YYD3_k127_2710361_2 Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000001141 98.0
YYD3_k127_2710361_3 Roadblock/LC7 domain K07131 - - 0.0000001309 57.0
YYD3_k127_2714653_0 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 559.0
YYD3_k127_2714653_1 Sodium:alanine symporter family K03310 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 514.0
YYD3_k127_2714653_2 Metallopeptidase family M24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005883 368.0
YYD3_k127_2714653_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008078 327.0
YYD3_k127_2714653_4 Integral membrane protein DUF92 - - - 0.00000000000000000000000000000000002179 145.0
YYD3_k127_2714653_5 - - - - 0.000000000000000000000000000002431 129.0
YYD3_k127_2716254_0 cellulose binding - - - 2.299e-197 629.0
YYD3_k127_2723034_0 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 325.0
YYD3_k127_2723034_1 Cys/Met metabolism PLP-dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000005656 228.0
YYD3_k127_2723034_2 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07712 - - 0.000000000000000000000000000000000000000000000000002241 197.0
YYD3_k127_2723034_3 Glycosyl hydrolases family 15 - - - 0.00000348 53.0
YYD3_k127_2728711_0 Alpha/beta hydrolase family K06889 - - 0.000000000000000000000000000000000000000000000000002993 191.0
YYD3_k127_2728711_1 DinB superfamily - - - 0.000000000000000000000000000000000006561 145.0
YYD3_k127_2728711_2 Glyoxalase-like domain - - - 0.00000000000000000001123 94.0
YYD3_k127_2728711_3 DinB family - - - 0.000000000000000000071 94.0
YYD3_k127_2738262_0 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005576 412.0
YYD3_k127_2738262_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000001863 225.0
YYD3_k127_2738262_2 - - - - 0.00000000000000000000000000000000000000001236 159.0
YYD3_k127_2738262_3 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0000000009958 71.0
YYD3_k127_2738262_4 - - - - 0.0000003558 60.0
YYD3_k127_2738262_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00005279 54.0
YYD3_k127_2739966_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1131.0
YYD3_k127_2739966_1 diguanylate cyclase K02488 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 342.0
YYD3_k127_2739966_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000001079 272.0
YYD3_k127_2744268_0 Enoyl-CoA hydratase/isomerase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 3.698e-211 676.0
YYD3_k127_2744268_1 lipoprotein transporter activity K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009245 334.0
YYD3_k127_2745009_0 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006131 463.0
YYD3_k127_2745009_1 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 341.0
YYD3_k127_2745009_2 Peptidase family M48 K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009826 271.0
YYD3_k127_2745009_3 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001189 235.0
YYD3_k127_2745009_4 Belongs to the peptidase M48B family K03799 - - 0.0000002931 52.0
YYD3_k127_2791297_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 381.0
YYD3_k127_2791297_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001229 239.0
YYD3_k127_2798395_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 459.0
YYD3_k127_2798395_1 Sodium:dicarboxylate symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 324.0
YYD3_k127_2798395_2 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000000000000000000000000000000000000008551 184.0
YYD3_k127_2798395_3 AAA-like domain - - - 0.0002986 49.0
YYD3_k127_2835718_0 ligase activity, forming nitrogen-metal bonds K02230 - 6.6.1.2 1.417e-287 894.0
YYD3_k127_2835718_1 Glycogen debranching enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 351.0
YYD3_k127_2846311_0 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 339.0
YYD3_k127_2846311_1 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III K00784 - 3.1.26.11 0.0000000000000000000000000002477 115.0
YYD3_k127_2846311_2 BlaR1 peptidase M56 - - - 0.000000000000000562 82.0
YYD3_k127_287703_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 450.0
YYD3_k127_287703_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 317.0
YYD3_k127_2879656_0 ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008931 437.0
YYD3_k127_2879656_1 Putative esterase K07017 - - 0.000000000000000000000000000000000000000000000000000000000000000000001001 247.0
YYD3_k127_2879656_2 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000002629 211.0
YYD3_k127_2879656_3 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000008497 134.0
YYD3_k127_2886885_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 4.115e-212 691.0
YYD3_k127_2886885_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 426.0
YYD3_k127_2886885_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 297.0
YYD3_k127_2886885_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000008288 64.0
YYD3_k127_2903331_0 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000001532 233.0
YYD3_k127_2903331_1 Surface antigen - - - 0.00000000000000000000000000000000000003695 149.0
YYD3_k127_2903331_2 SdiA-regulated - - - 0.00000000000003498 79.0
YYD3_k127_2909871_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 507.0
YYD3_k127_2909871_1 MacB-like periplasmic core domain K09808 - - 0.000000000000000000001998 97.0
YYD3_k127_2909871_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000499 89.0
YYD3_k127_2921390_0 Phenazine biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 327.0
YYD3_k127_2921390_1 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 324.0
YYD3_k127_2921390_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007361 278.0
YYD3_k127_2921390_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001265 239.0
YYD3_k127_2921390_4 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000134 190.0
YYD3_k127_2921390_5 Winged helix DNA-binding domain - - - 0.000000000000000000003841 97.0
YYD3_k127_2935575_0 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000006442 238.0
YYD3_k127_2935575_1 - - - - 0.000000000000000000000000000000000000000006883 165.0
YYD3_k127_2935575_2 - - - - 0.000000000000000000000000001769 118.0
YYD3_k127_2936391_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1125.0
YYD3_k127_2936391_1 SurA N-terminal domain K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000001617 268.0
YYD3_k127_2936391_2 PPIC-type PPIASE domain K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000002101 192.0
YYD3_k127_2937876_0 FAD dependent oxidoreductase K00285,K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19,1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 377.0
YYD3_k127_2937876_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001038 224.0
YYD3_k127_2937876_2 response to oxidative stress K08368 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.00000000000000000000000000000000000000000000000000794 199.0
YYD3_k127_2937876_3 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000007521 174.0
YYD3_k127_2937876_4 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000003739 149.0
YYD3_k127_2937876_5 DinB superfamily - - - 0.000000000002548 66.0
YYD3_k127_2957964_0 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 488.0
YYD3_k127_2957964_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 323.0
YYD3_k127_2957964_2 Clp protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003957 242.0
YYD3_k127_2957964_3 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000002869 201.0
YYD3_k127_2957964_4 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790 - 2.3.1.128 0.00000000000000000000000000000000000000000000000000007639 192.0
YYD3_k127_2957964_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000001494 102.0
YYD3_k127_2957964_6 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000003608 69.0
YYD3_k127_2957964_7 Fe-S protein K18979 - 1.17.99.6 0.0006314 45.0
YYD3_k127_2966775_0 cellulose binding - - - 0.0 1282.0
YYD3_k127_2966775_1 ABC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 433.0
YYD3_k127_2966775_2 MMPL family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 342.0
YYD3_k127_2966775_3 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000004965 213.0
YYD3_k127_2968091_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1315.0
YYD3_k127_2968091_1 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 8.343e-279 887.0
YYD3_k127_2968091_2 ABC transporter transmembrane region K11085 - - 4.028e-237 748.0
YYD3_k127_2968091_3 Domain of unknown function (DUF1929) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 366.0
YYD3_k127_2968091_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000742 243.0
YYD3_k127_2968091_5 TIGRFAM RHS repeat-associated core domain - - - 0.00000000000000000000001373 117.0
YYD3_k127_2968339_0 Glycosyl hydrolase family 3 N terminal domain K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000002487 272.0
YYD3_k127_2968339_1 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000002568 144.0
YYD3_k127_2968339_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.00000000000000004215 87.0
YYD3_k127_2974660_0 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000001941 244.0
YYD3_k127_2974660_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000009348 147.0
YYD3_k127_2974660_2 chaperone-mediated protein folding - - - 0.000000000000000000000000005862 126.0
YYD3_k127_2975033_0 L-seryl-tRNA selenium transferase K01042 - 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 405.0
YYD3_k127_2975033_1 Domain of unknown function (DUF1835) - - - 0.00000000000000000000000000000000000000000000000000000002193 211.0
YYD3_k127_2975033_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000004725 181.0
YYD3_k127_2975033_3 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000001071 169.0
YYD3_k127_2975033_4 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000003381 115.0
YYD3_k127_3012917_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000002791 250.0
YYD3_k127_3012917_1 - - - - 0.0000000000000000009633 89.0
YYD3_k127_3012917_2 Zincin-like metallopeptidase - - - 0.000000000000001849 85.0
YYD3_k127_3019151_0 LD-carboxypeptidase K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000005496 266.0
YYD3_k127_3019151_1 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.0000000000000000000000000000000000000000000000001204 189.0
YYD3_k127_3019151_2 NUDIX domain - - - 0.00000000000000000001379 98.0
YYD3_k127_3019151_3 Regulatory protein, FmdB family - - - 0.00000000002985 66.0
YYD3_k127_3020130_0 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 1.013e-239 762.0
YYD3_k127_3020130_1 PFAM amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004555 278.0
YYD3_k127_3020130_2 PFAM amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001327 261.0
YYD3_k127_3020130_3 TonB-dependent copper receptor K02014 - - 0.0001211 45.0
YYD3_k127_3030134_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 4.872e-199 629.0
YYD3_k127_3030134_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 303.0
YYD3_k127_3030134_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000004583 247.0
YYD3_k127_3030134_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000009164 142.0
YYD3_k127_3030134_4 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000007355 123.0
YYD3_k127_3030134_5 alpha/beta hydrolase fold - - - 0.00000000000000000000000002057 110.0
YYD3_k127_3035264_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K21307 - 1.8.5.6 5e-324 996.0
YYD3_k127_3035565_0 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000938 343.0
YYD3_k127_3035565_1 PFAM BNR Asp-box repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000002886 233.0
YYD3_k127_3069820_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 376.0
YYD3_k127_3069820_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000002348 235.0
YYD3_k127_3073886_0 COG0433 Predicted ATPase K06915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003559 312.0
YYD3_k127_3073886_1 COGs COG2380 conserved - - - 0.0000000000000000000000000000000000006376 151.0
YYD3_k127_3076545_0 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 303.0
YYD3_k127_3076545_1 - - - - 0.000000000000000000000000000000000000002673 162.0
YYD3_k127_3076545_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000000000000000000527 143.0
YYD3_k127_3076545_3 - - - - 0.0000000000009935 80.0
YYD3_k127_3076545_4 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000001248 69.0
YYD3_k127_3076545_5 Domain of unknown function (DUF1844) - - - 0.000000001843 59.0
YYD3_k127_309448_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 439.0
YYD3_k127_309448_1 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006215 429.0
YYD3_k127_309448_2 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001803 236.0
YYD3_k127_309448_3 PFAM Fe-S metabolism associated K02426 - - 0.0000000000000000000000000004797 120.0
YYD3_k127_309448_4 Rhodanese Homology Domain K01011 GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0016740,GO:0016782,GO:0016783,GO:0016784,GO:0031668,GO:0033554,GO:0034641,GO:0042221,GO:0042262,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360 2.8.1.1,2.8.1.2 0.000000000000000006258 87.0
YYD3_k127_3098379_0 3-methyl-2-oxobutanoate hydroxymethyltransferase activity K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 322.0
YYD3_k127_3098379_1 cytochrome P450 - - - 0.000000000000000000000000000001178 123.0
YYD3_k127_3098379_2 4Fe-4S single cluster domain K05337 - - 0.0000000008497 64.0
YYD3_k127_3130746_0 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 305.0
YYD3_k127_3130746_1 Thioredoxin - - - 0.0000000005547 64.0
YYD3_k127_3143312_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006358 367.0
YYD3_k127_3143312_1 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000000006019 229.0
YYD3_k127_3143312_2 EXOIII K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000002557 178.0
YYD3_k127_3149241_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 356.0
YYD3_k127_3149241_1 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006718 276.0
YYD3_k127_3149241_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000007204 188.0
YYD3_k127_3156391_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 3.034e-204 646.0
YYD3_k127_3156391_1 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001416 272.0
YYD3_k127_3156391_2 Psort location Cytoplasmic, score K00945 - 2.7.4.25 0.000000000000000000000000000000478 130.0
YYD3_k127_3156391_3 Glycine cleavage T-protein C-terminal barrel domain K06980 - - 0.000000000000000000000000004589 116.0
YYD3_k127_3163126_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 519.0
YYD3_k127_3163126_1 Glucose inhibited division protein A K21401 - 1.3.99.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007223 319.0
YYD3_k127_3163126_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000003523 177.0
YYD3_k127_3163126_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000003848 170.0
YYD3_k127_3163126_4 PFAM flavin reductase domain protein, FMN-binding - - - 0.000000000000000000000000000000000000009401 151.0
YYD3_k127_3166715_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1158.0
YYD3_k127_3166715_1 protein conserved in bacteria K11719 - - 0.000000000000000000003445 96.0
YYD3_k127_3166715_2 PFAM SPFH domain Band 7 family - - - 0.0000000000001751 81.0
YYD3_k127_3168976_0 Protein of unknown function, DUF - - - 0.0000000000000000000000000000000000000000000006678 182.0
YYD3_k127_3168976_1 acetyltransferase - - - 0.0000000000000000000000000000000000000000107 164.0
YYD3_k127_3170289_0 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000887 637.0
YYD3_k127_3170289_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008012 411.0
YYD3_k127_3170289_2 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000463 186.0
YYD3_k127_3170289_3 redox protein regulator of disulfide bond formation K07397 - - 0.0000000000000000000000002128 110.0
YYD3_k127_3170289_4 - - - - 0.000000000000000003256 91.0
YYD3_k127_3170289_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000001306 69.0
YYD3_k127_3170289_7 quinone binding - - - 0.0000004346 54.0
YYD3_k127_3189298_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 608.0
YYD3_k127_3189298_1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008329 304.0
YYD3_k127_3205567_0 Peptidase dimerisation domain K12941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 572.0
YYD3_k127_3205567_1 membrane organization - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 397.0
YYD3_k127_3205567_2 D-aminopeptidase K16203 - - 0.00000000000000000000000000000000000000000000000000000004726 209.0
YYD3_k127_3205567_3 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000003538 132.0
YYD3_k127_3208939_0 aminotransferase K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000003014 208.0
YYD3_k127_3208939_1 amine dehydrogenase activity - - - 0.00003509 55.0
YYD3_k127_3211030_0 Peptidase family S58 K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003963 439.0
YYD3_k127_3211030_1 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 353.0
YYD3_k127_3211030_2 Amidinotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004712 265.0
YYD3_k127_3211030_3 Amidohydrolase family K05603 - 3.5.3.13 0.0000001318 55.0
YYD3_k127_3213571_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 426.0
YYD3_k127_3213571_1 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001383 290.0
YYD3_k127_3213571_2 - - - - 0.0000000000000000000000000000000000000001052 160.0
YYD3_k127_3214110_0 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009673 557.0
YYD3_k127_3214110_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 447.0
YYD3_k127_3214110_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 356.0
YYD3_k127_3214110_3 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000004821 248.0
YYD3_k127_3214110_4 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000007781 219.0
YYD3_k127_3214110_5 Met-10+ like-protein K02687 - - 0.00000000000000000000000000000000000000000000005525 183.0
YYD3_k127_3214110_6 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000403 150.0
YYD3_k127_3214110_7 PFAM Histidine triad (HIT) protein K02503 - - 0.000000000000000000000000000000004639 130.0
YYD3_k127_3214110_8 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000511 135.0
YYD3_k127_3214110_9 Ribosomal protein S21 K02970 - - 0.000000000000000000000007816 101.0
YYD3_k127_3216165_0 B12 binding domain K00548 - 2.1.1.13 1.997e-242 762.0
YYD3_k127_3223165_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 403.0
YYD3_k127_3223165_1 Catalyzes the sodium-dependent transport of glutamate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 377.0
YYD3_k127_3223165_10 membrane - - - 0.000000000004191 78.0
YYD3_k127_3223165_11 - - - - 0.000000000005782 73.0
YYD3_k127_3223165_12 Catalyzes the sodium-dependent transport of glutamate K03312 - - 0.00000001356 61.0
YYD3_k127_3223165_2 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 292.0
YYD3_k127_3223165_3 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008236 271.0
YYD3_k127_3223165_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000002515 264.0
YYD3_k127_3223165_5 - - - - 0.00000000000000000000000000000000000000000000000000000000001679 210.0
YYD3_k127_3223165_6 UbiA prenyltransferase family K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000001848 186.0
YYD3_k127_3223165_7 pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for K15987 - 3.6.1.1 0.0000000000000000000000000000000000000000000000005686 177.0
YYD3_k127_3223165_8 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000568 124.0
YYD3_k127_3223165_9 PFAM nitrogen-fixing NifU domain protein - - - 0.000000000000001155 79.0
YYD3_k127_322371_0 COG1653 ABC-type sugar transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004625 261.0
YYD3_k127_322371_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000002157 226.0
YYD3_k127_322371_2 PFAM response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000001386 211.0
YYD3_k127_322371_3 MOSC domain - - - 0.000000000000000000000000000000000000000000000000000000003002 211.0
YYD3_k127_322371_4 - - - - 0.00000000000000000000000000000000000000000000000000000002529 203.0
YYD3_k127_322371_5 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000895 178.0
YYD3_k127_322371_6 Protein of unknown function (DUF1059) - - - 0.0000005097 53.0
YYD3_k127_3232735_0 Involved in the tonB-independent uptake of proteins - - - 5.174e-262 846.0
YYD3_k127_3232735_1 Dihydroxyacetone kinase family K07030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 317.0
YYD3_k127_3232735_2 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000001054 152.0
YYD3_k127_3232735_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000004601 138.0
YYD3_k127_3232735_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000004059 63.0
YYD3_k127_3232735_5 - - - - 0.000002179 59.0
YYD3_k127_3233625_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 519.0
YYD3_k127_3234485_0 Prolyl oligopeptidase family K01303 - 3.4.19.1 8.046e-204 645.0
YYD3_k127_3235474_0 Amidohydrolase family - - - 4.248e-243 770.0
YYD3_k127_3239360_0 Dipeptidyl peptidase IV (DPP IV) K01278 - 3.4.14.5 4.803e-261 824.0
YYD3_k127_3242893_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 5.862e-265 827.0
YYD3_k127_3242893_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 514.0
YYD3_k127_3242893_2 Cys/Met metabolism PLP-dependent enzyme K01758 - 4.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000642 496.0
YYD3_k127_3242893_3 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 354.0
YYD3_k127_3242893_4 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 322.0
YYD3_k127_3242893_5 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003455 316.0
YYD3_k127_3242893_6 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000005093 84.0
YYD3_k127_3247695_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 468.0
YYD3_k127_3247695_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 308.0
YYD3_k127_3247695_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007465 302.0
YYD3_k127_3247695_3 PFAM glycosyl transferase family 9 K02843 - - 0.00000000000000000000000000000000000000000000000000007671 199.0
YYD3_k127_3247695_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000002014 191.0
YYD3_k127_3247695_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000009932 180.0
YYD3_k127_324876_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 566.0
YYD3_k127_324876_1 Lumazine binding domain K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000007147 190.0
YYD3_k127_324876_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000009594 148.0
YYD3_k127_324876_3 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000001586 117.0
YYD3_k127_324876_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000002692 75.0
YYD3_k127_3250356_0 Malate synthase K01638 - 2.3.3.9 1.074e-222 698.0
YYD3_k127_3250356_1 Isocitrate lyase family K01637 - 4.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 622.0
YYD3_k127_3250356_2 Histidine kinase K02668,K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 369.0
YYD3_k127_3250356_3 phosphorelay signal transduction system K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000366 274.0
YYD3_k127_3250356_4 - - - - 0.00003797 55.0
YYD3_k127_3252424_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 317.0
YYD3_k127_3252424_1 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000005847 170.0
YYD3_k127_3252424_2 Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively - - - 0.0000000000000000000000002176 106.0
YYD3_k127_3270545_0 Penicillin amidase K01434 - 3.5.1.11 1.801e-280 873.0
YYD3_k127_3270545_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001422 228.0
YYD3_k127_3270545_2 - - - - 0.00000000000000001329 87.0
YYD3_k127_3274587_0 Peptidase family M28 - - - 6.474e-207 656.0
YYD3_k127_3299275_0 membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 564.0
YYD3_k127_3299275_1 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008554 325.0
YYD3_k127_3299275_2 LemA family K03744 - - 0.00000000000000000000000000000000000000001437 159.0
YYD3_k127_3309606_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004677 350.0
YYD3_k127_3309606_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 322.0
YYD3_k127_3309606_2 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000002351 233.0
YYD3_k127_3309606_3 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000001516 195.0
YYD3_k127_3309606_4 MerR HTH family regulatory protein - - - 0.0000000000000000000000000000002867 131.0
YYD3_k127_3309606_5 - - - - 0.0000000000000000000001545 111.0
YYD3_k127_3309606_6 Histidine kinase-like ATPase domain - - - 0.0000000000001393 83.0
YYD3_k127_3309606_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000004853 74.0
YYD3_k127_3309606_8 YceI-like domain - - - 0.0000000005524 70.0
YYD3_k127_3309606_9 Bacterial regulatory protein, Fis family - - - 0.0000004957 57.0
YYD3_k127_3314821_0 Involved in molybdopterin and thiamine biosynthesis, family 2 K03148,K21029,K21147 - 2.7.7.73,2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006259 411.0
YYD3_k127_3314821_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 301.0
YYD3_k127_3314821_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000001775 183.0
YYD3_k127_3317771_0 Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005368 404.0
YYD3_k127_3317771_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 313.0
YYD3_k127_3317771_2 Protein of unknown function DUF99 K09120 - - 0.00000000000000000000000000000000000000000000000000000000000000000009266 235.0
YYD3_k127_3317771_3 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000002055 217.0
YYD3_k127_3325892_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 351.0
YYD3_k127_3325892_1 peptidase activity - - - 0.00000000000000000000000004479 113.0
YYD3_k127_334107_0 transmembrane transporter activity K18138 - - 8.794e-305 943.0
YYD3_k127_334107_1 efflux transmembrane transporter activity K18300,K18308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005773 372.0
YYD3_k127_3350046_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 589.0
YYD3_k127_3350046_1 Sodium/hydrogen exchanger family K03455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 572.0
YYD3_k127_3350046_2 pyridoxal-dependent decarboxylase K01580 - 4.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 477.0
YYD3_k127_3350046_3 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001504 274.0
YYD3_k127_3350046_4 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000003126 213.0
YYD3_k127_3350046_5 PFAM Patatin - - - 0.000000000000000000000000000000000000000000000000000006926 200.0
YYD3_k127_3350046_6 Domain present in phytochromes and cGMP-specific phosphodiesterases. K07636 - 2.7.13.3 0.00000000000000000000005568 108.0
YYD3_k127_3350046_7 PFAM EamA-like transporter family - - - 0.00000000000000000000006641 111.0
YYD3_k127_3371735_0 succinyl-diaminopimelate desuccinylase activity K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 490.0
YYD3_k127_3371735_1 Sigma-70 region 2 - - - 0.000000000000000000000000000000000001057 145.0
YYD3_k127_3371735_2 Amidohydrolase family - - - 0.000000000000000000008024 105.0
YYD3_k127_337815_0 Zn_pept - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008473 307.0
YYD3_k127_337815_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000005104 125.0
YYD3_k127_337815_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000013 113.0
YYD3_k127_3395745_0 Hsp70 protein K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007568 537.0
YYD3_k127_3395745_1 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006965 553.0
YYD3_k127_3395745_2 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 424.0
YYD3_k127_3395745_3 rod shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000003623 151.0
YYD3_k127_3395745_4 rod shape-determining protein MreD K03571 - - 0.000000000000000000008751 99.0
YYD3_k127_3419261_0 Vitamin B12 dependent methionine synthase activation K00548 - 2.1.1.13 3.892e-294 914.0
YYD3_k127_3419261_1 Bacterial extracellular solute-binding protein K15495 - - 0.0000000000000000000000000000000000000000000000000000000000000000000166 244.0
YYD3_k127_3419261_2 YGGT family K02221 - - 0.00000000000000000000001009 111.0
YYD3_k127_3419261_3 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000001395 105.0
YYD3_k127_3419261_4 DUF167 K09131 - - 0.00000000000000001808 95.0
YYD3_k127_3419261_5 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.000000000000678 70.0
YYD3_k127_3422002_0 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 377.0
YYD3_k127_3422002_1 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000005597 170.0
YYD3_k127_3422002_2 SNARE associated Golgi protein - - - 0.000000000000000000000000001943 124.0
YYD3_k127_3430810_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 447.0
YYD3_k127_3430810_1 PFAM phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 374.0
YYD3_k127_3430810_2 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.0000000000000000000000009598 109.0
YYD3_k127_344888_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 489.0
YYD3_k127_344888_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 422.0
YYD3_k127_344888_2 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 346.0
YYD3_k127_344888_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006765 312.0
YYD3_k127_344888_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000459 271.0
YYD3_k127_344888_5 - - - - 0.0000001174 57.0
YYD3_k127_344888_6 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000006107 49.0
YYD3_k127_3451698_0 cytochrome c oxidase (Subunit II) - - - 0.00000000000000000000000000000000000000000000000000000009674 200.0
YYD3_k127_3451698_1 heme-copper terminal oxidase activity K02274 - 1.9.3.1 0.000000000000000000000000009298 113.0
YYD3_k127_3451698_2 Cytochrome b K03891 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000002202 62.0
YYD3_k127_3451698_3 - - - - 0.00006513 47.0
YYD3_k127_3452877_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 2.52e-246 780.0
YYD3_k127_3452877_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009252 444.0
YYD3_k127_3452877_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000802 399.0
YYD3_k127_3452877_3 Aminotransferase class-V K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 299.0
YYD3_k127_3452877_4 Belongs to the CinA family K03742,K03743 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.5.1.42 0.0000000000000000000000000000001503 126.0
YYD3_k127_3452877_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000002613 121.0
YYD3_k127_3453718_0 DNA ligase (ATP) activity K01971 - 6.5.1.1 2.562e-309 968.0
YYD3_k127_3453718_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009593 361.0
YYD3_k127_3453718_2 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000001073 265.0
YYD3_k127_3453718_3 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000006885 169.0
YYD3_k127_3453718_4 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000002325 140.0
YYD3_k127_3453718_5 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000007071 87.0
YYD3_k127_3453718_6 PFAM amidohydrolase - - - 0.00000001363 59.0
YYD3_k127_3459248_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 548.0
YYD3_k127_3459248_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005394 326.0
YYD3_k127_3459248_2 inositol monophosphatase K01092,K05602 - 3.1.3.15,3.1.3.25 0.000003056 49.0
YYD3_k127_3461410_0 esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 363.0
YYD3_k127_3461410_1 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 374.0
YYD3_k127_3472630_0 E1-E2 ATPase K17686 - 3.6.3.54 2.875e-308 962.0
YYD3_k127_3472630_1 ADP binding - - - 0.0000000000000000000000000000000000000000000000005973 196.0
YYD3_k127_3472630_2 Cytochrome c mono- and diheme variants - - - 0.0000000000000000000000000000000000000000000001758 173.0
YYD3_k127_3472630_3 Cupredoxin-like domain - - - 0.00000000000000000000000000000000000000003671 156.0
YYD3_k127_3472630_4 Domain of unknown function (DUF4142) K08995 - - 0.00000000000000000000000000003847 123.0
YYD3_k127_3472630_5 response to cobalt ion - - - 0.0000000000000000000003947 101.0
YYD3_k127_3472630_6 Domain of unknown function (DUF4142) K08995 - - 0.000000000000005613 89.0
YYD3_k127_3476916_0 TIGRFAM isocitrate dehydrogenase, NADP-dependent, prokaryotic type K00031 - 1.1.1.42 1.642e-204 642.0
YYD3_k127_3476916_1 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008727 426.0
YYD3_k127_3476916_2 -O-antigen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009014 263.0
YYD3_k127_3476916_3 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000002668 204.0
YYD3_k127_3476916_4 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000004629 145.0
YYD3_k127_3476916_5 - - - - 0.00000000000000000000000000001909 124.0
YYD3_k127_3476916_6 Vault protein inter-alpha-trypsin domain K07114 - - 0.000000000000000000000000000109 126.0
YYD3_k127_3476916_7 - - - - 0.0001568 53.0
YYD3_k127_3487446_0 ASPIC UnbV domain protein - - - 1.807e-305 960.0
YYD3_k127_3487446_1 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000006015 188.0
YYD3_k127_3488341_0 Elongation factor G C-terminus K06207 - - 1.056e-280 875.0
YYD3_k127_3488341_1 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 398.0
YYD3_k127_3488341_2 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 323.0
YYD3_k127_3488341_4 Helix-hairpin-helix motif - - - 0.000642 49.0
YYD3_k127_3495527_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 537.0
YYD3_k127_3495527_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000004158 66.0
YYD3_k127_3495527_2 Modulates RecA activity K03565 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000322 57.0
YYD3_k127_3499717_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 468.0
YYD3_k127_3499717_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 442.0
YYD3_k127_3499717_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 329.0
YYD3_k127_3508770_0 efflux transmembrane transporter activity - - - 0.0 1065.0
YYD3_k127_3508770_1 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000002156 113.0
YYD3_k127_3519972_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001938 285.0
YYD3_k127_3519972_1 Outer membrane receptor - - - 0.00000000000000000000502 109.0
YYD3_k127_3519972_2 Sigma-54 interaction domain - - - 0.000000000000000000008964 94.0
YYD3_k127_3522627_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003605 477.0
YYD3_k127_3522627_1 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488,K13819 - - 0.0000000000000000000000000000000000000000007544 169.0
YYD3_k127_3522627_2 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000002665 68.0
YYD3_k127_3522627_3 Disulphide isomerase - - - 0.000000003717 58.0
YYD3_k127_3531906_0 - - - - 0.000000000000000000000000000000000002662 147.0
YYD3_k127_3531906_1 Phytanoyl-CoA dioxygenase (PhyH) K21195 - 1.14.11.46 0.000000000000000000000000000000000008086 146.0
YYD3_k127_3531906_2 Nucleotidyl transferase - - - 0.00000116 59.0
YYD3_k127_3536815_0 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 307.0
YYD3_k127_3536815_1 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000001051 265.0
YYD3_k127_3536815_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000004925 257.0
YYD3_k127_3536815_3 HEAT repeats - - - 0.000000000000000000000000000000000000006752 156.0
YYD3_k127_3561670_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 473.0
YYD3_k127_3561670_1 GDP-6-deoxy-D-lyxo-4-hexulose reductase K15856 - 1.1.1.281 0.000000000000000000000000000000109 141.0
YYD3_k127_3561670_2 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.000000000001341 68.0
YYD3_k127_3565983_0 domain, Protein - - - 2.294e-288 899.0
YYD3_k127_3565983_1 hydrolase NrgC K22027 - 1.14.13.235 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000607 283.0
YYD3_k127_3565983_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001467 258.0
YYD3_k127_3565983_3 Beta-lactamase - - - 0.000000000000000000000000000000000000000000003773 165.0
YYD3_k127_3565983_4 SnoaL-like domain - - - 0.00001511 54.0
YYD3_k127_3574439_0 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002923 278.0
YYD3_k127_3574439_1 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000004993 259.0
YYD3_k127_3574439_2 - - - - 0.000000000000000000000000000001994 130.0
YYD3_k127_3574439_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000008263 125.0
YYD3_k127_3574439_4 Belongs to the acetyltransferase family. ArgA subfamily - - - 0.000000000000001522 79.0
YYD3_k127_3574439_5 Belongs to the HSP15 family K04762 - - 0.000000006051 59.0
YYD3_k127_3577851_0 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 383.0
YYD3_k127_3577851_1 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 324.0
YYD3_k127_3610626_0 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 297.0
YYD3_k127_3610626_1 Metal-sensitive transcriptional repressor K21600 - - 0.0000000000000000000000000000005247 128.0
YYD3_k127_3610626_2 Heavy-metal-associated domain K07213 - - 0.0000000000004801 72.0
YYD3_k127_3665388_0 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein - GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000007414 128.0
YYD3_k127_3665388_1 - - - - 0.000000000000000000000000000001273 129.0
YYD3_k127_3665388_2 Serine aminopeptidase, S33 K01055,K10216,K18092 - 3.1.1.24,3.7.1.9 0.00002493 53.0
YYD3_k127_3683129_0 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004272 346.0
YYD3_k127_3683129_1 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000002767 149.0
YYD3_k127_3683129_2 protease with the C-terminal PDZ domain - - - 0.00000000000002116 78.0
YYD3_k127_3706286_0 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000002616 243.0
YYD3_k127_3706286_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000001814 196.0
YYD3_k127_3706286_2 BFD-like [2Fe-2S] binding domain - - - 0.0000000001035 67.0
YYD3_k127_3721181_0 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000007282 244.0
YYD3_k127_3721181_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000002525 233.0
YYD3_k127_3721181_2 Glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000000000000000000000000000000000637 162.0
YYD3_k127_3721181_3 Domain of unknown function (DUF4440) - - - 0.00000000000000000000000000000000000001253 151.0
YYD3_k127_3721181_4 - - - - 0.000000000007987 75.0
YYD3_k127_3721181_5 - - - - 0.000233 51.0
YYD3_k127_3736862_0 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 475.0
YYD3_k127_3736862_1 DUF218 domain - - - 0.00000000000000000000000000000001645 136.0
YYD3_k127_3736862_2 Subtilase family - - - 0.0000000000000000000153 93.0
YYD3_k127_3741306_0 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 480.0
YYD3_k127_3741306_1 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 396.0
YYD3_k127_3741306_2 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 310.0
YYD3_k127_3741306_3 Fructose-bisphosphate aldolase class-II - - - 0.000000000000000000000000000000000001572 141.0
YYD3_k127_3742566_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000512 268.0
YYD3_k127_3742566_2 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000002636 170.0
YYD3_k127_3742566_3 - - - - 0.000000000000000000000000000001924 129.0
YYD3_k127_3742566_4 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000000000000002 113.0
YYD3_k127_374612_0 Cytochrome c7 and related cytochrome c - - - 0.0000000000000131 86.0
YYD3_k127_3763515_0 Transglycosylase SLT domain K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001796 274.0
YYD3_k127_3763515_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001594 238.0
YYD3_k127_3763515_2 Belongs to the TPP enzyme family - - - 0.000000000000000000000000000000000000000000000000000001208 206.0
YYD3_k127_3763515_3 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000922 203.0
YYD3_k127_3763515_4 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000006862 194.0
YYD3_k127_3763515_5 Transglycosylase SLT domain - - - 0.00000000000000000000000000000001114 141.0
YYD3_k127_3765649_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000001336 170.0
YYD3_k127_3765649_2 - - - - 0.0002382 50.0
YYD3_k127_3766070_0 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000000005269 210.0
YYD3_k127_3766070_1 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000000000000000000000000000000002876 134.0
YYD3_k127_3773570_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 376.0
YYD3_k127_3773570_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K02567 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002288 277.0
YYD3_k127_3773570_2 COG1680 Beta-lactamase class C and other penicillin binding proteins K01286,K08641 - 3.4.13.22,3.4.16.4 0.00000000000000093 84.0
YYD3_k127_3773997_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 429.0
YYD3_k127_3773997_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008005 396.0
YYD3_k127_3773997_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000431 382.0
YYD3_k127_3773997_3 PTS system sorbose subfamily IIB component K19507 - - 0.00000000000000000000000000000000000000000000002095 174.0
YYD3_k127_3773997_4 PTS system mannose/fructose/sorbose family IID component K02796 - - 0.0000000000000000000000000000000000001755 153.0
YYD3_k127_3773997_5 PTS system sorbose-specific iic component K02795 - - 0.00000000000000000000000002081 121.0
YYD3_k127_3773997_6 PTS HPr component phosphorylation site K11189 - - 0.00000000000000000004598 102.0
YYD3_k127_3773997_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000815 78.0
YYD3_k127_3773997_8 PTS system fructose IIA component K02744 - - 0.0000000000005025 78.0
YYD3_k127_3773997_9 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000002017 53.0
YYD3_k127_3783085_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008735 539.0
YYD3_k127_3783085_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 526.0
YYD3_k127_3783085_2 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000003491 217.0
YYD3_k127_3791892_0 Aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002411 285.0
YYD3_k127_3791892_1 DEAD-box RNA helicase involved in K05592 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032270,GO:0033554,GO:0033592,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045934,GO:0046483,GO:0046700,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070035,GO:0070417,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097617,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000112 3.6.4.13 0.000003193 59.0
YYD3_k127_3819825_0 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 511.0
YYD3_k127_3819825_1 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 409.0
YYD3_k127_3819825_2 stress-induced mitochondrial fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003247 287.0
YYD3_k127_3819825_3 Nitrate reductase cytochrome c-type subunit (NapB) K02568 - - 0.000000000000000000000000000004215 129.0
YYD3_k127_3819825_4 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000009478 114.0
YYD3_k127_3819825_5 Cytochrome c7 and related cytochrome c - - - 0.0000000003685 64.0
YYD3_k127_3829665_0 Elongator protein 3, MiaB family, Radical SAM K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 503.0
YYD3_k127_3829665_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000117 171.0
YYD3_k127_3829665_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000003153 163.0
YYD3_k127_383147_0 esterase - - - 3.607e-272 848.0
YYD3_k127_383147_1 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 409.0
YYD3_k127_383147_2 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000000000000000000004922 235.0
YYD3_k127_383147_3 ACT domain K09707 - - 0.000000000000000000000003522 107.0
YYD3_k127_3840233_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 508.0
YYD3_k127_3840233_1 Polyprenyl synthetase K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 343.0
YYD3_k127_3840233_2 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000001788 210.0
YYD3_k127_3840233_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000002286 194.0
YYD3_k127_3840233_4 Domain of unknown function (DUF4321) - - - 0.000000000000000000000001309 105.0
YYD3_k127_3840233_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000002858 78.0
YYD3_k127_3840233_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000466 65.0
YYD3_k127_3840288_0 protein conserved in bacteria K09797 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007404 266.0
YYD3_k127_3840288_1 acetyltransferase K03789,K06323 - 2.3.1.128 0.00000000000000008 89.0
YYD3_k127_3842281_0 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 531.0
YYD3_k127_3846950_0 Peptidase family M20/M25/M40 K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000003102 254.0
YYD3_k127_3846950_1 Pyridoxal-phosphate dependent enzyme K01751 - 4.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000643 251.0
YYD3_k127_3860189_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 1.255e-218 695.0
YYD3_k127_3887489_0 LytB protein K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 478.0
YYD3_k127_3887489_1 Surface antigen variable number K07278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 380.0
YYD3_k127_3887489_2 protein conserved in bacteria K09800 GO:0002790,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032940,GO:0032991,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0097347 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 339.0
YYD3_k127_3887489_3 BetI-type transcriptional repressor, C-terminal - - - 0.000007465 55.0
YYD3_k127_3887489_4 PAS modulated sigma54 specific transcriptional regulator, Fis family - - - 0.000008304 54.0
YYD3_k127_3897733_0 WD40-like Beta Propeller Repeat - - - 6.178e-225 729.0
YYD3_k127_3897733_1 PFAM S23 ribosomal protein - - - 0.00000000000000001249 89.0
YYD3_k127_3897733_2 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0000000000002225 74.0
YYD3_k127_3897733_3 arylsulfatase A - - - 0.0000002088 55.0
YYD3_k127_3902272_0 Protein of unknown function (DUF1460) - - - 0.00000000000000000000000000000000000000001352 160.0
YYD3_k127_3902272_1 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000004406 111.0
YYD3_k127_3902464_0 Outer membrane protein beta-barrel family K16087,K16092 - - 0.00000000000000000000000000000000000000000000000000002762 212.0
YYD3_k127_3902464_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000001012 80.0
YYD3_k127_3944079_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007291 471.0
YYD3_k127_3944079_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000005905 263.0
YYD3_k127_3948497_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 491.0
YYD3_k127_3948497_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000003435 109.0
YYD3_k127_3948497_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000001803 62.0
YYD3_k127_3948497_3 Uncharacterised protein family (UPF0182) K09118 - - 0.0000000002024 74.0
YYD3_k127_3953525_0 PFAM binding-protein-dependent transport systems inner membrane component K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000057 299.0
YYD3_k127_3953525_1 PFAM binding-protein-dependent transport systems inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003726 255.0
YYD3_k127_3953525_2 Belongs to the ABC transporter superfamily K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000006207 166.0
YYD3_k127_3953525_3 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000000000000000008892 109.0
YYD3_k127_395704_0 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008006 442.0
YYD3_k127_395704_1 amidohydrolase K03392 - 4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 301.0
YYD3_k127_3968450_0 Opacity protein - - - 0.0000000000000002906 86.0
YYD3_k127_3968450_1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 0.0000000000004241 69.0
YYD3_k127_39704_0 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002918 565.0
YYD3_k127_39704_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 421.0
YYD3_k127_39704_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000002246 115.0
YYD3_k127_39704_3 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000000000008731 88.0
YYD3_k127_39704_4 - - - - 0.000000000007454 73.0
YYD3_k127_39704_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000106 61.0
YYD3_k127_3974148_0 cytochrome c oxidase subunit I K02274 - 1.9.3.1 1.31e-271 843.0
YYD3_k127_3974148_1 Adenylate cyclase K01768 - 4.6.1.1 0.00002251 52.0
YYD3_k127_3978208_0 Belongs to the aldehyde dehydrogenase family K00128,K00130,K10217 - 1.2.1.3,1.2.1.32,1.2.1.8,1.2.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007905 526.0
YYD3_k127_3978208_1 Endoribonuclease L-PSP K15067 - 3.5.99.5 0.00000000000000000000000000000000000000000000001066 178.0
YYD3_k127_397973_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 2.913e-214 680.0
YYD3_k127_397973_1 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 327.0
YYD3_k127_3980273_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 3.25e-207 672.0
YYD3_k127_3980273_1 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 386.0
YYD3_k127_3980273_2 Protein of unknown function (DUF983) - - - 0.000000000000000000000004265 112.0
YYD3_k127_4025097_0 Luciferase-like monooxygenase K17228 - 1.14.14.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 517.0
YYD3_k127_4025097_1 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 416.0
YYD3_k127_4025097_2 Glycine cleavage T-protein C-terminal barrel domain - - - 0.00000000000000000000000007431 108.0
YYD3_k127_4025097_3 NAD(P)H-dependent FMN reductase - - - 0.0000000000000001475 93.0
YYD3_k127_4033317_0 4Fe-4S binding domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002347 249.0
YYD3_k127_4033317_1 Belongs to the GcvT family K06980 - - 0.00000002455 65.0
YYD3_k127_4034088_0 hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 477.0
YYD3_k127_4034088_1 Hydrogenase formation hypA family K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001625 269.0
YYD3_k127_4034088_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000004174 61.0
YYD3_k127_4046304_0 Bacterial protein of unknown function (DUF937) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003132 246.0
YYD3_k127_4046304_1 transglycosylase associated protein - - - 0.0000000000000001078 80.0
YYD3_k127_4046304_2 FR47-like protein - - - 0.000000000004981 74.0
YYD3_k127_4055029_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 520.0
YYD3_k127_4055029_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009088 438.0
YYD3_k127_4055029_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008278 262.0
YYD3_k127_4055029_3 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000001049 118.0
YYD3_k127_4055029_4 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000005618 90.0
YYD3_k127_4056012_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 381.0
YYD3_k127_4056012_1 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003524 275.0
YYD3_k127_4056012_2 D-isomer specific 2-hydroxyacid dehydrogenase K00015 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.26 0.00000000000000000000000000000000000000004295 156.0
YYD3_k127_4056012_3 Putative cyclase - - - 0.00002557 46.0
YYD3_k127_4067459_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 465.0
YYD3_k127_4067459_1 Aerotolerance regulator N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 364.0
YYD3_k127_4067459_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003204 321.0
YYD3_k127_4067459_3 Domain of unknown function (DUF4159) - - - 0.000000000001045 68.0
YYD3_k127_4070099_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 3.284e-255 795.0
YYD3_k127_4070099_1 Biotin carboxylase C-terminal domain K01941,K01961 - 6.3.4.14,6.3.4.6,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 482.0
YYD3_k127_4070099_2 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.000000000000000000000000000000000000008713 155.0
YYD3_k127_4074235_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006916 281.0
YYD3_k127_4074235_1 secondary active sulfate transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003923 291.0
YYD3_k127_4074235_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000006016 206.0
YYD3_k127_4074235_3 DivIVA protein K04074 - - 0.00000000000000000000000006076 117.0
YYD3_k127_4075513_0 Peptidase, M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000127 200.0
YYD3_k127_4075513_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000006277 178.0
YYD3_k127_4075513_2 Sigma-70, region 4 K03088 - - 0.00000005474 59.0
YYD3_k127_4081339_0 Prolyl oligopeptidase family K01303 - 3.4.19.1 3.95e-262 826.0
YYD3_k127_4081339_1 Acetyl xylan esterase (AXE1) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002853 235.0
YYD3_k127_4081339_2 Cytidylate kinase K00876 - 2.7.1.48 0.0009165 42.0
YYD3_k127_4092797_0 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008724 506.0
YYD3_k127_4092797_1 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008843 428.0
YYD3_k127_4092797_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000853 220.0
YYD3_k127_4092797_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000001731 109.0
YYD3_k127_4092797_4 - - - - 0.0000000000000000000000009077 120.0
YYD3_k127_4095099_0 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000511 369.0
YYD3_k127_4095099_1 glyoxalase III activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003108 273.0
YYD3_k127_4095099_2 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000008725 151.0
YYD3_k127_4095099_3 DNA-binding transcription factor activity - - - 0.00000000000000000000006356 100.0
YYD3_k127_4104488_0 Beta-eliminating lyase K01668 - 4.1.99.2 9.617e-207 651.0
YYD3_k127_4104488_1 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 378.0
YYD3_k127_4105297_0 Peptidase family S58 K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 473.0
YYD3_k127_4105297_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000003068 198.0
YYD3_k127_4105297_2 CbiX - - - 0.000000000317 64.0
YYD3_k127_4122731_0 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 421.0
YYD3_k127_4122731_1 Putative aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002377 271.0
YYD3_k127_4122731_2 domain, Protein K01179,K07260,K13735 - 3.2.1.4,3.4.17.14 0.0000000000000000000000000000000000000000000000000000000001038 224.0
YYD3_k127_4131772_0 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000001288 182.0
YYD3_k127_4131772_1 - - - - 0.000000000000000000008221 93.0
YYD3_k127_4133865_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008903 604.0
YYD3_k127_4133865_1 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 400.0
YYD3_k127_4133865_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 344.0
YYD3_k127_4133865_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000005483 223.0
YYD3_k127_4133865_4 - - - - 0.000000000000000000000000000000000000005456 165.0
YYD3_k127_4133865_5 Lipopolysaccharide-assembly, LptC-related - - - 0.000000001951 62.0
YYD3_k127_4163516_0 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000009866 178.0
YYD3_k127_4163516_1 Alpha beta hydrolase - - - 0.00000000000000000000000000000000008628 149.0
YYD3_k127_4163516_2 COG0346 Lactoylglutathione lyase and related lyases - - - 0.000000000000000000000000000000001674 136.0
YYD3_k127_4163516_3 Catalyzes the transfer of an acetyl group from acetyl- CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring K18816 - 2.3.1.82 0.000000000000000000000000000005449 134.0
YYD3_k127_4163516_4 Cupin domain - - - 0.00000000000006329 73.0
YYD3_k127_4169204_0 Amidohydrolase family - - - 6.308e-213 672.0
YYD3_k127_4169204_1 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000887 278.0
YYD3_k127_4169204_2 Cytidine and deoxycytidylate deaminase zinc-binding region - - - 0.0000000000000000000000000000000000000000000000002004 182.0
YYD3_k127_4177162_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006999 484.0
YYD3_k127_4177162_1 Aminotransferase class I and II K10206 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 417.0
YYD3_k127_4177162_2 HELICc2 K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 349.0
YYD3_k127_4177162_3 Domain of unknown function (DUF2437) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000198 263.0
YYD3_k127_4177162_4 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003651 244.0
YYD3_k127_4177162_5 PFAM ATP-binding region K02484,K07678 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000008296 219.0
YYD3_k127_4177162_6 - - - - 0.000000000001645 78.0
YYD3_k127_4177162_8 - - - - 0.0000007504 55.0
YYD3_k127_4190075_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.044e-241 756.0
YYD3_k127_4190075_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004535 271.0
YYD3_k127_4203631_0 Aldehyde dehydrogenase family K22187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 528.0
YYD3_k127_4203631_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 440.0
YYD3_k127_4203631_10 Binds the 23S rRNA K02909 - - 0.000000000000000000000001437 105.0
YYD3_k127_4203631_11 Control of competence regulator ComK, YlbF/YmcA - - - 0.0000000000000000227 90.0
YYD3_k127_4203631_12 PFAM Curli production assembly transport component CsgG - - - 0.000001866 59.0
YYD3_k127_4203631_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009031 428.0
YYD3_k127_4203631_3 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 339.0
YYD3_k127_4203631_4 Domain of unknown function (DUF4105) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001244 284.0
YYD3_k127_4203631_5 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000001043 259.0
YYD3_k127_4203631_6 Stage II sporulation protein K06381 - - 0.00000000000000000000000000000000000000000000000000000000001329 224.0
YYD3_k127_4203631_7 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000001781 209.0
YYD3_k127_4203631_8 Methyltransferase small domain K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000009571 177.0
YYD3_k127_4203631_9 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000003401 164.0
YYD3_k127_4207682_0 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 412.0
YYD3_k127_4207682_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 361.0
YYD3_k127_4207682_2 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 321.0
YYD3_k127_4207682_3 Cell cycle protein K05837 - - 0.000000000000002431 76.0
YYD3_k127_4246564_0 NADPH-dependent FMN reductase K19784 - - 0.0000000000000000000000000000000000000000000000001315 186.0
YYD3_k127_4246564_1 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000000004171 160.0
YYD3_k127_4246564_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.00000000000000000000000000000003881 128.0
YYD3_k127_4246564_3 Belongs to the peptidase M48B family K03799 - - 0.0000000988 61.0
YYD3_k127_4247441_0 Amino acid permease - - - 1.929e-224 715.0
YYD3_k127_4247441_1 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 394.0
YYD3_k127_4247441_2 Transcriptional regulatory protein, C terminal K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001094 276.0
YYD3_k127_4247441_3 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000003225 261.0
YYD3_k127_4247441_4 helix_turn_helix, Arsenical Resistance Operon Repressor - GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010035,GO:0010038,GO:0010288,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032791,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046870,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097063,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000005037 218.0
YYD3_k127_4247441_5 OsmC-like protein - - - 0.00000000000000000000000000000000000000000000005427 175.0
YYD3_k127_4247441_6 Protein of unknown function (DUF1569) - - - 0.00000000000000000000000000000239 125.0
YYD3_k127_4249959_0 Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 586.0
YYD3_k127_4250332_0 TonB dependent receptor - - - 3.116e-224 721.0
YYD3_k127_4252173_0 Sodium:solute symporter family - - - 1.895e-249 781.0
YYD3_k127_4252173_1 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 462.0
YYD3_k127_4252173_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000004889 185.0
YYD3_k127_4252173_3 Putative metallopeptidase - - - 0.0000000000000000000000000000000000000000001173 173.0
YYD3_k127_4259873_0 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003401 254.0
YYD3_k127_4259873_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000004965 235.0
YYD3_k127_4259873_2 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000005717 185.0
YYD3_k127_4307118_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004845 359.0
YYD3_k127_4307118_1 Outer membrane protein beta-barrel domain - - - 0.0000000000398 72.0
YYD3_k127_43142_0 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003796 348.0
YYD3_k127_43142_1 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000003006 214.0
YYD3_k127_4318881_0 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 539.0
YYD3_k127_4318881_1 ABC transporter K06158 - - 0.00000000000000000000000000344 117.0
YYD3_k127_4318881_2 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.0000000000000000000000003896 110.0
YYD3_k127_4318881_3 Peptidase dimerisation domain K12941 - - 0.00000001919 59.0
YYD3_k127_4339223_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 608.0
YYD3_k127_4339223_1 Drug exporters of the RND superfamily K06994,K07003,K20466,K20470 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0009273,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0033036,GO:0040007,GO:0042546,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071554,GO:0071702,GO:0071766,GO:0071840,GO:0071944,GO:1901264 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 356.0
YYD3_k127_4340283_0 Amidohydrolase family K06015 - 3.5.1.81 4.702e-219 692.0
YYD3_k127_4340283_1 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 353.0
YYD3_k127_4340283_2 Domain of unknown function (DUF3471) K06889 - - 0.000000000000000000001513 96.0
YYD3_k127_4340283_3 - - - - 0.000000002049 64.0
YYD3_k127_4340283_4 - - - - 0.0000166 52.0
YYD3_k127_4340294_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000002855 222.0
YYD3_k127_4340294_1 impB/mucB/samB family K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000002371 183.0
YYD3_k127_4352435_0 protein tyrosine kinase activity K03593 - - 0.0000000000000000000000000000000000000000000000000000006135 207.0
YYD3_k127_4352435_1 AMP binding - - - 0.00000000000000000000000000000000004001 143.0
YYD3_k127_4352435_2 rubredoxin K22405 - 1.6.3.4 0.000000000000000000000000000000002791 132.0
YYD3_k127_4352435_3 Proto-chlorophyllide reductase 57 kd subunit - - - 0.000000000000000000000728 101.0
YYD3_k127_4352435_4 4Fe-4S single cluster domain of Ferredoxin I - - - 0.00000000001291 73.0
YYD3_k127_436101_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K07306,K10700,K16964,K17050 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.17.99.2,1.7.5.1,1.8.2.4,1.8.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 394.0
YYD3_k127_4362381_0 Xylose isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006248 383.0
YYD3_k127_4362381_1 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000001266 213.0
YYD3_k127_4362381_2 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000006514 205.0
YYD3_k127_4362381_3 L,D-transpeptidase catalytic domain - - - 0.0000000004272 63.0
YYD3_k127_4372088_0 Ethanolamine utilization protein EutJ K01999 - - 0.0000000000000000000000000000000000004135 154.0
YYD3_k127_4372088_1 Cold shock protein K03704 - - 0.000000000000000000000000000003805 119.0
YYD3_k127_4372088_2 Chemotaxis K03406 - - 0.00000004121 66.0
YYD3_k127_4383637_0 oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor K00311 GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043783,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070013,GO:0098573,GO:0098798,GO:1902494,GO:1990204 1.5.5.1 2.869e-212 672.0
YYD3_k127_4383637_1 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.0000000000000000001671 92.0
YYD3_k127_438925_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.402e-288 904.0
YYD3_k127_438925_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006085 339.0
YYD3_k127_438925_10 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000000005274 132.0
YYD3_k127_438925_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 306.0
YYD3_k127_438925_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 307.0
YYD3_k127_438925_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002536 271.0
YYD3_k127_438925_5 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005196 263.0
YYD3_k127_438925_6 Ribosomal protein S2 K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000007136 227.0
YYD3_k127_438925_7 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000714 225.0
YYD3_k127_438925_8 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000001714 224.0
YYD3_k127_438925_9 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000893 182.0
YYD3_k127_4392863_0 AsnC-type helix-turn-helix domain K05710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008697 251.0
YYD3_k127_4392863_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 GO:0008150,GO:0040007 1.2.1.70 0.000000000002021 73.0
YYD3_k127_4392863_2 HmuY protein - - - 0.0001742 51.0
YYD3_k127_4396833_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006351,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009330,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034335,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0140097,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576 5.99.1.3 4.256e-263 824.0
YYD3_k127_4396833_1 AMP-binding enzyme K01897 - 6.2.1.3 2.612e-195 627.0
YYD3_k127_4396833_10 sensor histidine kinase response - - - 0.00000000000000000000008829 111.0
YYD3_k127_4396833_11 Putative modulator of DNA gyrase K03592 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564 - 0.00000000000005301 85.0
YYD3_k127_4396833_12 - - - - 0.00000000000005671 79.0
YYD3_k127_4396833_13 Protein of unknown function (DUF721) - - - 0.000000384 58.0
YYD3_k127_4396833_14 4-vinyl reductase, 4VR K07013 - - 0.0000007783 59.0
YYD3_k127_4396833_15 PFAM Ig domain protein, group 2 domain protein - - - 0.00001448 57.0
YYD3_k127_4396833_16 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000184 48.0
YYD3_k127_4396833_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514 601.0
YYD3_k127_4396833_3 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 514.0
YYD3_k127_4396833_4 GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000006148 263.0
YYD3_k127_4396833_5 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000005996 227.0
YYD3_k127_4396833_6 PFAM peptidase U62 modulator of DNA gyrase K03568 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000007522 198.0
YYD3_k127_4396833_7 Phosphoribosyl transferase domain K07101 - - 0.0000000000000000000000000000000000000000000000004479 180.0
YYD3_k127_4396833_8 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000002274 178.0
YYD3_k127_4396833_9 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000004218 162.0
YYD3_k127_44098_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 455.0
YYD3_k127_44098_1 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008008 274.0
YYD3_k127_44098_2 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000032 188.0
YYD3_k127_44098_3 Ferric uptake regulator family K03711 - - 0.000000000000000000000000000000000008069 147.0
YYD3_k127_44098_4 - - - - 0.00000000000000000000004019 110.0
YYD3_k127_44098_5 TIGRFAM gamma-glutamyltransferase K00681 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576 2.3.2.2,3.4.19.13 0.000000000000000003679 86.0
YYD3_k127_4445233_0 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 331.0
YYD3_k127_4445233_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00006711 46.0
YYD3_k127_4453908_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 459.0
YYD3_k127_4453908_1 methylisocitrate lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 372.0
YYD3_k127_4453908_2 PHP domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007777 319.0
YYD3_k127_4453908_3 - - - - 0.0000000000000000000386 98.0
YYD3_k127_4453908_4 - - - - 0.000000000000007452 75.0
YYD3_k127_4453908_6 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0008150,GO:0015711,GO:0015849,GO:0016020,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0071702,GO:0071944 - 0.000000000001248 80.0
YYD3_k127_4470190_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 2.974e-239 750.0
YYD3_k127_4470190_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.12e-199 634.0
YYD3_k127_4470190_2 neurotransmitter:sodium symporter activity K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008582 531.0
YYD3_k127_4470190_3 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 319.0
YYD3_k127_4470190_4 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000002984 191.0
YYD3_k127_4470190_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000002772 138.0
YYD3_k127_4470190_6 Molybdopterin guanine dinucleotide synthesis protein B K03753 - - 0.000000000000000000000005773 109.0
YYD3_k127_4470190_7 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000007686 94.0
YYD3_k127_4470190_8 - - - - 0.0000000000000000001562 101.0
YYD3_k127_4470190_9 - - - - 0.00000000000000001466 88.0
YYD3_k127_447170_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 6.02e-278 871.0
YYD3_k127_447170_1 Pyridine nucleotide-disulfide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003883 286.0
YYD3_k127_447170_2 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000009878 250.0
YYD3_k127_4476_0 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0000000000000000000000000000000000000001254 166.0
YYD3_k127_4476_1 Bacterial Ig-like domain 2 - - - 0.00000000000000000000000000000002945 142.0
YYD3_k127_4476_2 Putative molybdenum carrier - - - 0.000000000000001986 78.0
YYD3_k127_4514296_0 DNA-directed DNA polymerase K02337,K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008311 626.0
YYD3_k127_4517461_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 505.0
YYD3_k127_4517461_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.000000000000000007615 92.0
YYD3_k127_4531759_0 Peptidase M16 inactive domain - - - 0.0000000000000000000000000000000001424 148.0
YYD3_k127_4531759_1 amidohydrolase - - - 0.0000000000000000000000000711 111.0
YYD3_k127_4547325_0 repeat protein - - - 1.309e-207 672.0
YYD3_k127_4547325_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 537.0
YYD3_k127_4547325_2 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 297.0
YYD3_k127_4554921_0 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 418.0
YYD3_k127_4554921_1 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.0000000000000000000000000000000002899 136.0
YYD3_k127_4554921_2 Zn-ribbon protein possibly nucleic acid-binding K07164 - - 0.000000000000000000000004279 111.0
YYD3_k127_455627_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 355.0
YYD3_k127_455627_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003832 330.0
YYD3_k127_455627_2 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003577 261.0
YYD3_k127_455627_3 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000001189 155.0
YYD3_k127_455627_4 ferredoxin-NADP+ reductase activity - - - 0.000000000000000000000000000206 127.0
YYD3_k127_4557921_0 amino acid K03294,K13868 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 339.0
YYD3_k127_4557921_1 acetyltransferase K03789,K06323 - 2.3.1.128 0.00001612 52.0
YYD3_k127_4557921_2 Membrane - - - 0.0004094 51.0
YYD3_k127_457655_0 succinylglutamate desuccinylase aspartoacylase K06987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002052 265.0
YYD3_k127_457655_1 PFAM nucleoside H symporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000007283 243.0
YYD3_k127_4584829_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 1.616e-222 696.0
YYD3_k127_4592939_0 D-isomer specific 2-hydroxyacid dehydrogenase K00015 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 311.0
YYD3_k127_4592939_1 MOFRL family K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008362 282.0
YYD3_k127_4592939_2 LytR cell envelope-related transcriptional attenuator - - - 0.000000004826 59.0
YYD3_k127_4609103_0 Fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 556.0
YYD3_k127_4609103_1 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000001199 263.0
YYD3_k127_4609103_2 histidine-tRNA ligase activity K01892,K02502 - 6.1.1.21 0.000000006902 59.0
YYD3_k127_4617204_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07032 - - 0.00000000000000000000000000000000000000000000000000000000001001 209.0
YYD3_k127_4617204_1 Tellurite resistance protein TerB - - - 0.00000000000000000000000001154 112.0
YYD3_k127_4617204_2 Acyl-transferase K00655 - 2.3.1.51 0.00000000000000003411 87.0
YYD3_k127_4630700_0 Serine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 408.0
YYD3_k127_4630700_1 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000002988 254.0
YYD3_k127_4642133_0 UbiA prenyltransferase family K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 293.0
YYD3_k127_4642133_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000699 142.0
YYD3_k127_4642133_2 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000001222 59.0
YYD3_k127_4645415_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000527 582.0
YYD3_k127_4645415_1 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009566 415.0
YYD3_k127_4649562_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 1.917e-215 691.0
YYD3_k127_4649562_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 445.0
YYD3_k127_4649562_2 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.000000000000000000000000003311 119.0
YYD3_k127_4650574_0 histidine-tRNA ligase activity K01892,K02502 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000323 211.0
YYD3_k127_4650574_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000002881 154.0
YYD3_k127_4651568_0 PFAM Ribonuclease BN-like family K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001863 275.0
YYD3_k127_4651568_1 - - - - 0.0000000000000000000000000000000002173 136.0
YYD3_k127_4651568_2 membrane K07278 - - 0.00000000001397 69.0
YYD3_k127_4657948_0 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K04040,K20616 - 2.5.1.133,2.5.1.62 0.0000000000000000000000000000000000000000000000000000000000005715 223.0
YYD3_k127_4657948_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000003615 179.0
YYD3_k127_4657948_2 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.00000000000000000000000000002605 126.0
YYD3_k127_4660200_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007812 302.0
YYD3_k127_4660200_1 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000602 289.0
YYD3_k127_4660200_2 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001403 250.0
YYD3_k127_4660200_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000005063 252.0
YYD3_k127_4660200_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000001117 186.0
YYD3_k127_4660200_5 STAS domain K04749 - - 0.0000000000000000000000000000003093 126.0
YYD3_k127_4660200_6 COG2172 Anti-sigma regulatory factor (Ser Thr protein kinase) K04757 - 2.7.11.1 0.00000000000000000001121 102.0
YYD3_k127_4660200_7 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000148 91.0
YYD3_k127_4675291_0 PFAM aminotransferase class I and II K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006298 458.0
YYD3_k127_4675291_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007072 331.0
YYD3_k127_4675291_2 DinB family - - - 0.00000000000000000000002968 101.0
YYD3_k127_4677955_0 DALR_2 K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 473.0
YYD3_k127_4677955_1 mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000007215 204.0
YYD3_k127_4677955_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000001792 134.0
YYD3_k127_4677955_3 - - - - 0.0000005909 54.0
YYD3_k127_4690447_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 516.0
YYD3_k127_4690447_1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 484.0
YYD3_k127_4690447_2 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000002308 133.0
YYD3_k127_4690447_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000003379 122.0
YYD3_k127_4690447_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000005152 85.0
YYD3_k127_4693758_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 428.0
YYD3_k127_4693758_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007377 353.0
YYD3_k127_4693758_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 297.0
YYD3_k127_4693758_3 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000005435 88.0
YYD3_k127_4693758_4 PDZ domain - - - 0.000000000000169 74.0
YYD3_k127_4693758_5 - - - - 0.0000000002719 72.0
YYD3_k127_4700390_0 short-chain dehydrogenase reductase SDR K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 336.0
YYD3_k127_4700390_1 polysaccharide deacetylase - - - 0.00000000005674 72.0
YYD3_k127_4700390_2 Glycopeptide antibiotics resistance protein - - - 0.000005336 58.0
YYD3_k127_4701_0 lipolytic protein G-D-S-L family - - - 0.0003293 52.0
YYD3_k127_4716091_0 COG0076 Glutamate decarboxylase and related PLP-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 484.0
YYD3_k127_4716091_1 cellular manganese ion homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 359.0
YYD3_k127_4724556_0 secondary active sulfate transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 547.0
YYD3_k127_4724556_1 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 524.0
YYD3_k127_4724556_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 393.0
YYD3_k127_4724556_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000871 389.0
YYD3_k127_4724556_4 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 370.0
YYD3_k127_4724556_5 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002668 332.0
YYD3_k127_4724556_6 Secretion protein K01993 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 308.0
YYD3_k127_4725652_0 PFAM Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004132 276.0
YYD3_k127_4725652_1 zinc D-Ala-D-Ala carboxypeptidase activity K08641 - 3.4.13.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000003361 271.0
YYD3_k127_4751291_0 transcription factor binding K15836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 476.0
YYD3_k127_4751291_1 Proline racemase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007369 263.0
YYD3_k127_4751291_2 PFAM V-type ATPase 116 kDa K02123 - - 0.000000000000000000000000000000000000001148 166.0
YYD3_k127_4756966_0 aerobic electron transport chain K00425,K08738 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006544 563.0
YYD3_k127_4756966_1 Proto-chlorophyllide reductase 57 kD subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000004267 233.0
YYD3_k127_4756966_2 Cytochrome c K02305 - - 0.0001226 49.0
YYD3_k127_4783984_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000004801 248.0
YYD3_k127_4783984_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000001126 155.0
YYD3_k127_4783984_2 Histidine kinase - - - 0.0000000003406 62.0
YYD3_k127_4783984_3 Outer membrane efflux protein K12340 - - 0.00000003521 66.0
YYD3_k127_4806618_0 Putative RNA methylase family UPF0020 K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005973 292.0
YYD3_k127_4806618_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006704 254.0
YYD3_k127_4806618_2 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.00000000000000000000000000000000000000000000000000000000000000005214 239.0
YYD3_k127_4806618_3 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000001891 114.0
YYD3_k127_4842513_0 Part of a membrane complex involved in electron transport K03614 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 321.0
YYD3_k127_4842513_1 Part of a membrane complex involved in electron transport K03615 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000758 312.0
YYD3_k127_4842513_2 Part of a membrane complex involved in electron transport K03613 - - 0.0000000000000000000000000000000000000000000000000000000000000000005119 238.0
YYD3_k127_4842513_3 Part of a membrane complex involved in electron transport - - - 0.000000000000000000000000000000000001432 158.0
YYD3_k127_4842513_4 Part of a membrane complex involved in electron transport K03617 - - 0.0000000000000000000000000000001372 126.0
YYD3_k127_4886729_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 520.0
YYD3_k127_4886729_1 Protein of unknown function DUF99 K09120 - - 0.0000000000000000000000000000007551 123.0
YYD3_k127_488825_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 1.557e-199 629.0
YYD3_k127_488825_1 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000007527 118.0
YYD3_k127_488825_2 Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH K22136 - - 0.00000000000000000001221 94.0
YYD3_k127_488825_3 Bacillithiol biosynthesis BshC K22136 - - 0.000000004008 63.0
YYD3_k127_490049_0 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 411.0
YYD3_k127_490049_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001157 239.0
YYD3_k127_490049_2 Polysaccharide pyruvyl transferase - GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009272,GO:0009987,GO:0012505,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046919,GO:0051072,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:1901576 - 0.00006219 47.0
YYD3_k127_4901278_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 552.0
YYD3_k127_4901278_1 glyoxalase III activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001435 259.0
YYD3_k127_4907228_0 ABC-type antimicrobial peptide transport system, permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002974 389.0
YYD3_k127_4911638_0 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 341.0
YYD3_k127_4911638_1 amino acid activation for nonribosomal peptide biosynthetic process K05889,K12132 - 1.1.2.6,2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 314.0
YYD3_k127_4911638_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001834 289.0
YYD3_k127_4911638_3 His Kinase A (phospho-acceptor) domain K02484,K07644 GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.000000000000000000000000000000000000005878 162.0
YYD3_k127_4911638_4 amino acid activation for nonribosomal peptide biosynthetic process K05889,K12132 - 1.1.2.6,2.7.11.1 0.0000000000000000000000000000001485 135.0
YYD3_k127_4911638_5 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000003056 86.0
YYD3_k127_4913120_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 398.0
YYD3_k127_4913120_1 Domain of unknown function (DUF892) - - - 0.00000000000000000000000000000000000000000000004426 177.0
YYD3_k127_4913120_2 - - - - 0.000000000000000000000000000000000000000006418 162.0
YYD3_k127_4913120_3 Uncharacterized conserved protein (COG2071) K09166 - - 0.00000000000000000000004909 104.0
YYD3_k127_4913120_4 CsbD-like - - - 0.00000000000000000011 92.0
YYD3_k127_4913120_5 Protein of unknown function (DUF1328) - - - 0.00002046 53.0
YYD3_k127_4923435_0 HD domain K07023 - - 0.000000000000000000000000000000000000000000000000000000000000000000006081 243.0
YYD3_k127_4923435_1 NUDIX hydrolase K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000000000000004175 216.0
YYD3_k127_4923435_10 Protein of unknown function (DUF4019) - - - 0.000005742 55.0
YYD3_k127_4923435_11 Major facilitator Superfamily - - - 0.0002028 49.0
YYD3_k127_4923435_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000001831 187.0
YYD3_k127_4923435_3 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000000000000000006324 180.0
YYD3_k127_4923435_4 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000000000000000004862 179.0
YYD3_k127_4923435_5 - - - - 0.0000000000000000000000000000000000000001754 155.0
YYD3_k127_4923435_6 - - - - 0.000000000000000000000000000000000000005935 152.0
YYD3_k127_4923435_7 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000000000000000004095 146.0
YYD3_k127_4923435_8 - - - - 0.00000000000001899 75.0
YYD3_k127_4923435_9 - - - - 0.000000000001937 69.0
YYD3_k127_4930381_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000001385 197.0
YYD3_k127_4930381_1 PFAM DSBA oxidoreductase - - - 0.00000000000000000000000000000000000000002955 158.0
YYD3_k127_4930381_2 Peptidase family M23 - - - 0.000000000000000000000000000000000000002963 157.0
YYD3_k127_4930381_3 TPM domain K06872 - - 0.000000000000000000000000002482 128.0
YYD3_k127_4930381_4 nucleotidyltransferase activity - - - 0.000000000000000000000375 105.0
YYD3_k127_4942627_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 399.0
YYD3_k127_4942627_1 Domain of unknown function (DUF4388) - - - 0.0000000000000000000000000000007157 142.0
YYD3_k127_4942627_2 CheC-like family K03410 - - 0.00001155 48.0
YYD3_k127_4946806_0 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 498.0
YYD3_k127_4946806_1 Molybdopterin oxidoreductase K00370,K17050 - 1.7.5.1 0.00000000000000000000000000000001488 128.0
YYD3_k127_4959524_0 AcrB/AcrD/AcrF family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 489.0
YYD3_k127_4959524_1 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 340.0
YYD3_k127_4963665_0 UDP binding domain K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632 584.0
YYD3_k127_4963665_1 UDP binding domain K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 522.0
YYD3_k127_4963665_2 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 417.0
YYD3_k127_4963665_3 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000006759 166.0
YYD3_k127_4963665_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000002307 143.0
YYD3_k127_4964727_0 Winged helix DNA-binding domain K09927 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 464.0
YYD3_k127_4964727_1 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004373 284.0
YYD3_k127_4964727_2 40-residue YVTN family beta-propeller repeat - - - 0.00000000000000000000000000000000114 144.0
YYD3_k127_4964727_3 - - - - 0.0000000000000002599 91.0
YYD3_k127_4964727_4 Protein of unknown function (DUF2892) - - - 0.0000000007049 66.0
YYD3_k127_4969008_0 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 309.0
YYD3_k127_4969008_1 AAA domain K03546 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008851 305.0
YYD3_k127_4970204_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008146 452.0
YYD3_k127_4970204_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004946 283.0
YYD3_k127_4970204_2 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000002076 200.0
YYD3_k127_4970204_3 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000443 196.0
YYD3_k127_4970204_4 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000001253 142.0
YYD3_k127_4970204_5 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000005871 87.0
YYD3_k127_4970204_6 Ribosomal protein L36 K02919 - - 0.0000000000000369 72.0
YYD3_k127_4970204_7 - - - - 0.0000000229 60.0
YYD3_k127_4975428_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 531.0
YYD3_k127_4975428_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 298.0
YYD3_k127_497761_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001188 257.0
YYD3_k127_497761_1 COG NOG14600 non supervised orthologous group - - - 0.00000000000000000000000000005081 117.0
YYD3_k127_497761_2 Belongs to the UPF0434 family K09791 - - 0.0000000000000000001914 89.0
YYD3_k127_497761_3 Belongs to the ClpA ClpB family K03696 - - 0.000009512 55.0
YYD3_k127_5008772_0 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 322.0
YYD3_k127_5012401_0 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.00000000000000000000000000000000000000000000000000000002274 200.0
YYD3_k127_5012401_1 Protein of unknown function, DUF481 K07283 - - 0.000000000000000000000000000000000000816 154.0
YYD3_k127_5012401_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000005342 90.0
YYD3_k127_5013746_0 Aminotransferase class-III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000967 561.0
YYD3_k127_5013746_1 TIGRFAM methylmalonate-semialdehyde dehydrogenase K00140,K22187 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000006991 196.0
YYD3_k127_5013746_2 ketosteroid isomerase - - - 0.0000000000000000000000000032 122.0
YYD3_k127_5022023_0 Amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 486.0
YYD3_k127_5022023_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 445.0
YYD3_k127_5022023_2 Homeodomain-like domain K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000376 435.0
YYD3_k127_5022023_3 3-hydroxyanthranilic acid dioxygenase K00452 - 1.13.11.6 0.000000000000000000000000000000000000000000000000000000000000000001138 232.0
YYD3_k127_5022023_4 - - - - 0.00003951 53.0
YYD3_k127_5027705_0 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 378.0
YYD3_k127_5027705_1 Competence-damaged protein K03742 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 379.0
YYD3_k127_5027705_2 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000008663 179.0
YYD3_k127_5050969_0 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005515 381.0
YYD3_k127_5050969_1 ubiquinone biosynthetic process - - - 0.0000000000000000000000000000000000000002395 158.0
YYD3_k127_5050969_2 COG1670 Acetyltransferases, including N-acetylases of - - - 0.000000000000000000000000000000002324 135.0
YYD3_k127_5050969_3 - - - - 0.000000000000002322 80.0
YYD3_k127_5062374_0 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 374.0
YYD3_k127_5062374_1 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000002647 183.0
YYD3_k127_5062374_2 4Fe-4S binding domain - - - 0.00000000000000000000000000000001957 130.0
YYD3_k127_5083147_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 380.0
YYD3_k127_5083147_1 cytochrome c oxidase K02351,K02862 - - 0.0000000000000000000000000000000000000000000000003002 188.0
YYD3_k127_5083147_2 Copper chaperone PCu(A)C K03619,K07152,K09796 GO:0003674,GO:0005048,GO:0005488,GO:0033218,GO:0042277 - 0.00000000000000000000000000000000000000000006333 169.0
YYD3_k127_5083147_3 Copper chaperone PCu(A)C - - - 0.00000000000000001821 89.0
YYD3_k127_5083147_4 pathogenesis - - - 0.000000000000005063 81.0
YYD3_k127_5083147_5 CopC domain K07156 - - 0.0000000001199 73.0
YYD3_k127_5083147_6 Copper resistance K07245 - - 0.00003406 55.0
YYD3_k127_5103617_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 396.0
YYD3_k127_5103617_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000002174 235.0
YYD3_k127_5103617_2 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits - - - 0.00000000001378 67.0
YYD3_k127_51129_0 Nodulation protein S (NodS) - - - 0.000000000000000000000000000000000000000000000000000000000000000000005238 248.0
YYD3_k127_51129_1 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.0000000000000000002854 100.0
YYD3_k127_5128541_0 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 3.902e-200 632.0
YYD3_k127_5128541_1 Glycosyltransferase 36 associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 461.0
YYD3_k127_5128541_2 TOBE domain K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003611 384.0
YYD3_k127_5184622_0 Belongs to the carbamoyltransferase HypF family K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009454 458.0
YYD3_k127_5184622_1 Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000001574 231.0
YYD3_k127_5184622_2 hydrogenase maturation protease K03605 - - 0.000000000000000000000000000000000003766 142.0
YYD3_k127_5184622_3 respiratory electron transport chain K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.0000000000000000000000000001805 117.0
YYD3_k127_5184622_4 nickel cation binding K04651 - - 0.0005324 49.0
YYD3_k127_519146_0 ligase activity, forming nitrogen-metal bonds K02230 - 6.6.1.2 1.834e-208 658.0
YYD3_k127_519146_1 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000006362 143.0
YYD3_k127_519146_2 DoxX-like family - - - 0.0000000000000000000000000000000003807 135.0
YYD3_k127_5193913_0 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs K03520 - 1.2.5.3 0.0 1029.0
YYD3_k127_5193913_1 RDD family K06384 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 361.0
YYD3_k127_5193913_2 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000004377 237.0
YYD3_k127_5193913_3 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000155 227.0
YYD3_k127_5193913_4 pathogenesis - - - 0.0000000000000000007268 96.0
YYD3_k127_5193913_5 Domain of unknown function (DUF4129) - - - 0.000000128 61.0
YYD3_k127_5193913_6 Carbon monoxide dehydrogenase subunit G (CoxG) - - - 0.00009277 45.0
YYD3_k127_5195274_0 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003688 351.0
YYD3_k127_5195274_1 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 298.0
YYD3_k127_5195274_2 GHMP kinases C terminal K07031 - 2.7.1.168 0.0000000000000000000000000000000000000000000000005454 188.0
YYD3_k127_5195274_3 amidohydrolase - - - 0.00000000000000000182 91.0
YYD3_k127_5195274_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000001788 62.0
YYD3_k127_5198742_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 595.0
YYD3_k127_5198742_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000001599 167.0
YYD3_k127_5198991_0 membrane organization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 520.0
YYD3_k127_5198991_1 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000001848 192.0
YYD3_k127_5198991_2 - - - - 0.000000000000214 83.0
YYD3_k127_5199397_0 Sulfate permease family K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 593.0
YYD3_k127_5199397_1 Proton-conducting membrane transporter K12137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 448.0
YYD3_k127_5199397_2 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003961 295.0
YYD3_k127_5199397_3 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000000000001744 215.0
YYD3_k127_5199397_4 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000000007369 198.0
YYD3_k127_5199397_5 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 0.0000000000000000000000000000000000002027 153.0
YYD3_k127_5199397_6 - - - - 0.000000000001563 70.0
YYD3_k127_5199397_7 - - - - 0.000000000001679 67.0
YYD3_k127_5204410_0 LVIVD repeat - - - 1.051e-280 878.0
YYD3_k127_5204410_1 Domain of unknown function (DUF305) - - - 0.000000000000000000000000000000000000000000000000000001571 195.0
YYD3_k127_520694_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 486.0
YYD3_k127_520694_1 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 415.0
YYD3_k127_5210190_0 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 338.0
YYD3_k127_5210190_1 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000176 233.0
YYD3_k127_5210190_2 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000006512 189.0
YYD3_k127_5210190_3 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070930,GO:0071704,GO:1901564 - 0.00000000000000000000000000000000000000000000000003945 186.0
YYD3_k127_5210190_4 - - - - 0.000000000000000000000000000248 119.0
YYD3_k127_5210190_5 rhodanese-related sulfurtransferase - - - 0.0000000000000003206 80.0
YYD3_k127_5210781_0 nitrous-oxide reductase activity K00376,K02275 GO:0000041,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0015677,GO:0030001,GO:0042597,GO:0044464,GO:0051179,GO:0051234 1.7.2.4,1.9.3.1 4.487e-308 955.0
YYD3_k127_5210781_1 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009068 289.0
YYD3_k127_5210781_2 lipoprotein involved in nitrous oxide reduction - - - 0.000000000000000000000000000000000000000000000000000000000003744 223.0
YYD3_k127_5210781_3 Cytochrome c - - - 0.0000000000000000000000000000000002267 136.0
YYD3_k127_5210781_4 2 iron, 2 sulfur cluster binding K13643 - - 0.000000000000000000000002485 109.0
YYD3_k127_5210781_5 lipoprotein involved in nitrous oxide reduction K19342 - - 0.00000000000000000000002062 104.0
YYD3_k127_5210781_6 Domain present in carbohydrate binding proteins and sugar hydrolses K07218 - - 0.00000000000000002326 88.0
YYD3_k127_5216368_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 369.0
YYD3_k127_5216368_1 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000001117 149.0
YYD3_k127_5216368_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 0.0000000000000000009276 95.0
YYD3_k127_5218979_0 Atp-dependent helicase - - - 3.056e-297 934.0
YYD3_k127_5218979_1 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 540.0
YYD3_k127_5218979_2 pilus organization - - - 0.0000000000000000000000000000000000000000000143 181.0
YYD3_k127_5218979_3 Beta-lactamase - - - 0.00000000000000000000000000000000000002346 151.0
YYD3_k127_5218979_4 N-Acetylmuramoyl-L-alanine amidase - - - 0.00000000000000000000000000000000006004 155.0
YYD3_k127_5218979_5 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000000000002571 138.0
YYD3_k127_5218979_6 Thioredoxin - - - 0.000000000000000000000000000000003378 136.0
YYD3_k127_5218979_7 Transglycosylase associated protein - - - 0.000000000000000000000000002268 114.0
YYD3_k127_5219560_0 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 397.0
YYD3_k127_5219560_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 412.0
YYD3_k127_5219560_2 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 297.0
YYD3_k127_5219560_3 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004627 282.0
YYD3_k127_5219560_4 Protein of unknown function (DUF1572) - - - 0.000000000000000000000000000000000002035 143.0
YYD3_k127_5219560_5 Opacity protein - - - 0.000000000003524 75.0
YYD3_k127_5219560_6 - - - - 0.00000005937 54.0
YYD3_k127_5225104_0 PFAM peptidase S9A prolyl oligopeptidase domain protein beta-propeller K01354 - 3.4.21.83 3.259e-204 651.0
YYD3_k127_5225104_1 Sulfite exporter TauE/SafE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002568 260.0
YYD3_k127_5228930_0 ATPase P-type (Transporting), HAD superfamily, subfamily IC K01535,K01537 - 3.6.3.6,3.6.3.8 1.879e-314 990.0
YYD3_k127_5228930_1 E1-E2 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001455 267.0
YYD3_k127_5228930_2 tryptophan 2,3-dioxygenase activity K00453,K03392 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11,4.1.1.45 0.000000000000000000000000000000000000000000000000000000002596 204.0
YYD3_k127_5231171_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000001752 149.0
YYD3_k127_5231171_1 - - - - 0.00000000000000000000000000000002089 139.0
YYD3_k127_5231171_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000001395 100.0
YYD3_k127_5242961_0 Erythromycin esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000742 586.0
YYD3_k127_5242961_1 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000172 242.0
YYD3_k127_5242961_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000002874 93.0
YYD3_k127_5242961_3 IMP dehydrogenase activity - - - 0.0000000000000000006234 92.0
YYD3_k127_5242961_4 CBS domain K07182 - - 0.000000000003511 77.0
YYD3_k127_5252396_0 Domain of unknown function (DUF3471) K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008986 329.0
YYD3_k127_5252396_1 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000006259 161.0
YYD3_k127_5252396_2 Putative adhesin - - - 0.00000000000000000000000000001823 128.0
YYD3_k127_5252396_3 Putative adhesin - - - 0.0000000000000005467 88.0
YYD3_k127_5252396_4 - - - - 0.000000000000005147 77.0
YYD3_k127_5278771_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000001574 158.0
YYD3_k127_5278771_1 Amidohydrolase family - - - 0.000000000000000000004157 95.0
YYD3_k127_5278771_2 Putative bacterial sensory transduction regulator - - - 0.00000000000000003562 92.0
YYD3_k127_5278771_3 lactoylglutathione lyase activity - - - 0.000000000004497 70.0
YYD3_k127_5282441_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.013e-230 723.0
YYD3_k127_5282441_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 308.0
YYD3_k127_5282441_2 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005621 293.0
YYD3_k127_5282441_3 Transcription elongation factor, N-terminal K03624 - - 0.0000000000000000000000000000000000000000002881 166.0
YYD3_k127_5282441_4 carboxylic ester hydrolase activity - - - 0.000000000000000000000000000000000000000003069 169.0
YYD3_k127_5282441_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - - - 0.0000000000000000000000000000000000000005559 152.0
YYD3_k127_5282441_6 protein kinase activity K12132 - 2.7.11.1 0.0001315 44.0
YYD3_k127_5282442_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 359.0
YYD3_k127_5282442_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000002686 231.0
YYD3_k127_5282442_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000000000000000002143 183.0
YYD3_k127_5295265_0 lysine biosynthetic process via aminoadipic acid - - - 1.497e-217 699.0
YYD3_k127_5295265_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003195 273.0
YYD3_k127_5295265_2 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000002938 175.0
YYD3_k127_53235_0 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 489.0
YYD3_k127_53235_1 PFAM Xylose isomerase domain protein TIM barrel K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 355.0
YYD3_k127_53235_2 Xylose isomerase domain protein TIM barrel - - - 0.0000000000000000000000000000000000000001148 154.0
YYD3_k127_5326891_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007726 355.0
YYD3_k127_5326891_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000006349 116.0
YYD3_k127_5326891_2 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000015 115.0
YYD3_k127_5327438_0 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001802 272.0
YYD3_k127_5327438_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000001016 164.0
YYD3_k127_5327438_2 - - - - 0.00008955 49.0
YYD3_k127_5327438_3 PFAM glycosyl transferase group 1 K00696 - 2.4.1.14 0.0005346 44.0
YYD3_k127_5339776_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 454.0
YYD3_k127_5339776_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000002164 244.0
YYD3_k127_5352287_0 alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004899 535.0
YYD3_k127_5352287_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 388.0
YYD3_k127_5352287_2 luxR family - - - 0.000000000000000000000000000000000008839 144.0
YYD3_k127_5352287_3 - - - - 0.0000000000001311 79.0
YYD3_k127_5352287_4 PFAM Acetyltransferase (GNAT) family - - - 0.0009765 48.0
YYD3_k127_5356405_0 COG0433 Predicted ATPase K06915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009883 505.0
YYD3_k127_5356405_1 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 354.0
YYD3_k127_5356405_2 AAA domain K03546 - - 0.000000000000000000000000000000000000000000000000000000000000000001179 248.0
YYD3_k127_5356775_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 402.0
YYD3_k127_5356775_1 Peptidase S15 K06978 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000003169 166.0
YYD3_k127_539868_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 526.0
YYD3_k127_539868_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 486.0
YYD3_k127_539868_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 411.0
YYD3_k127_539868_3 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000001347 213.0
YYD3_k127_539868_4 - - - - 0.00000000000000000000000000000004364 133.0
YYD3_k127_539868_5 - - - - 0.0000000000000000000000000001519 116.0
YYD3_k127_539868_6 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000006914 69.0
YYD3_k127_5410077_0 HELICc2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004695 556.0
YYD3_k127_5410077_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006441 378.0
YYD3_k127_5410077_2 - - - - 0.0000000000000000000000000000001169 125.0
YYD3_k127_541417_0 Elongation factor G, domain IV K02355 - - 2.065e-206 658.0
YYD3_k127_541417_1 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 356.0
YYD3_k127_541417_2 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000001559 131.0
YYD3_k127_5447565_0 alcohol dehydrogenase K00008 - 1.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 422.0
YYD3_k127_5447565_1 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.00000000000000000000000000000000000000000000001505 182.0
YYD3_k127_5447565_2 Allophanate hydrolase subunit 2 K06350 - - 0.00000000000000000000000000009498 120.0
YYD3_k127_5456220_0 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002447 265.0
YYD3_k127_5456220_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000004377 231.0
YYD3_k127_5463174_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 511.0
YYD3_k127_5463174_1 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 330.0
YYD3_k127_5463174_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001616 261.0
YYD3_k127_5463174_3 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000004814 212.0
YYD3_k127_5463174_4 lipid kinase activity - - - 0.00000000000000000000000000000000000000000009493 171.0
YYD3_k127_5463174_5 YCII-related domain - - - 0.00000000000000000000001309 101.0
YYD3_k127_5463174_6 Acetyltransferase (GNAT) domain - - - 0.0000004291 56.0
YYD3_k127_5473219_0 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004376 502.0
YYD3_k127_5473219_1 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 295.0
YYD3_k127_5473219_2 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000003153 145.0
YYD3_k127_5484669_0 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 550.0
YYD3_k127_5484669_1 Phenylacetic acid catabolic protein K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007856 347.0
YYD3_k127_5484669_2 Pfam:DUF59 K02612 - - 0.0000000000000000000000000000000000000000000000000002513 193.0
YYD3_k127_5484669_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 2.1.1.63 0.000000000000000000000000000000000000000000000000002071 189.0
YYD3_k127_5484669_4 Phenylacetic acid degradation B K02610 - - 0.00000000000000000000000000000000000000000003842 165.0
YYD3_k127_5484669_5 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.000000000000000000000002778 106.0
YYD3_k127_5484669_6 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.000000000000421 70.0
YYD3_k127_5512204_0 TIGRFAM DNA polymerase III, alpha subunit K02337,K14162 - 2.7.7.7 2.862e-275 874.0
YYD3_k127_551701_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000007782 221.0
YYD3_k127_551701_1 Ankyrin repeat - - - 0.000000000000000008402 94.0
YYD3_k127_551701_2 DinB family - - - 0.0000002118 59.0
YYD3_k127_5522650_0 Aldehyde dehydrogenase family K00128,K00131 - 1.2.1.3,1.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 370.0
YYD3_k127_5522650_1 PAS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009094 350.0
YYD3_k127_5522650_10 Sodium:solute symporter family - - - 0.0000000002722 62.0
YYD3_k127_5522650_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003998 338.0
YYD3_k127_5522650_3 Transcriptional regulatory protein, C terminal K02483,K07665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004399 311.0
YYD3_k127_5522650_4 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001508 278.0
YYD3_k127_5522650_5 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000000000000000000000001745 170.0
YYD3_k127_5522650_6 Biopolymer transport protein ExbD/TolR K03560 - - 0.000000000000000000000000000000001051 134.0
YYD3_k127_5522650_7 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000000000000000000004743 126.0
YYD3_k127_5522650_8 BadF BadG BcrA BcrD - - - 0.000000000000000000000000003618 123.0
YYD3_k127_5522650_9 - - - - 0.0000000000000003825 88.0
YYD3_k127_5525502_0 Carbon-monoxide dehydrogenase, large subunit K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 583.0
YYD3_k127_5525502_1 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000001147 232.0
YYD3_k127_5525502_2 COGs COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM CutM homologs K03519,K11178 - 1.17.1.4,1.2.5.3 0.000000000000000000000000000005569 121.0
YYD3_k127_5531538_0 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000333 569.0
YYD3_k127_5531538_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004316 289.0
YYD3_k127_5544400_0 FES K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001075 260.0
YYD3_k127_5544400_1 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000002077 200.0
YYD3_k127_5544400_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000003611 191.0
YYD3_k127_5544400_3 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000000000001209 102.0
YYD3_k127_5553473_0 HEAT repeats - - - 0.00000000000000000000000000000002783 143.0
YYD3_k127_5553473_1 PPIC-type PPIASE domain K03770 - 5.2.1.8 0.00000000000000000001181 106.0
YYD3_k127_5561013_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 420.0
YYD3_k127_5561013_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000001868 236.0
YYD3_k127_5561013_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000003984 129.0
YYD3_k127_556573_0 Amidohydrolase family - - - 3.342e-251 800.0
YYD3_k127_5568851_0 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007662 488.0
YYD3_k127_5568851_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000271 278.0
YYD3_k127_5568851_2 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000001869 237.0
YYD3_k127_5568851_3 N-Acyl-D-aspartate D-glutamate deacylase K01465,K06015 - 3.5.1.81,3.5.2.3 0.00000000000000000000000000000000003118 136.0
YYD3_k127_5568851_4 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000003726 127.0
YYD3_k127_5568851_5 Biotin-lipoyl like - - - 0.000000000004063 74.0
YYD3_k127_5570677_0 Asparaginase K01444 - 3.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006509 361.0
YYD3_k127_5570677_1 Quinolinate phosphoribosyl transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 306.0
YYD3_k127_5570677_2 metallophosphoesterase - - - 0.0001395 53.0
YYD3_k127_5581674_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 565.0
YYD3_k127_5581674_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 410.0
YYD3_k127_5581674_2 N-Acetylmuramoyl-L-alanine amidase K01187 - 3.2.1.20 0.00000000000000000000000000000000000000000000000000001598 196.0
YYD3_k127_5585240_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 498.0
YYD3_k127_5585240_1 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000003271 148.0
YYD3_k127_5585240_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000004938 115.0
YYD3_k127_5585240_3 Beta-lactamase K01286 - 3.4.16.4 0.0000000000000000000006967 102.0
YYD3_k127_5585240_4 cheY-homologous receiver domain - - - 0.0002089 49.0
YYD3_k127_5589298_0 beta' subunit K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 301.0
YYD3_k127_5589298_1 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.0000000000000000000000000000000000000000001108 163.0
YYD3_k127_5589298_2 Peptidase family M20/M25/M40 K01438 - 3.5.1.16 0.00000000000000000000000000000000000002829 146.0
YYD3_k127_5589972_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 6.086e-212 669.0
YYD3_k127_5589972_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000003204 201.0
YYD3_k127_5594212_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 587.0
YYD3_k127_5594212_1 Peptidase C14 caspase catalytic subunit p20 - - - 0.0000000000000000001901 91.0
YYD3_k127_5600255_0 Alpha mannosidase, middle domain K01191 - 3.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 522.0
YYD3_k127_5600255_1 Protein of unknown function (DUF455) K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 387.0
YYD3_k127_5600255_2 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 364.0
YYD3_k127_5600255_3 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000008146 247.0
YYD3_k127_5600255_4 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000004658 233.0
YYD3_k127_5600255_5 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000009993 235.0
YYD3_k127_5600255_6 Belongs to the RtcB family K14415 - 6.5.1.3 0.00000000008108 62.0
YYD3_k127_5600255_7 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00002366 50.0
YYD3_k127_5606290_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 565.0
YYD3_k127_5606290_1 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 541.0
YYD3_k127_5606290_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001016 269.0
YYD3_k127_5619530_0 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007015 342.0
YYD3_k127_5619530_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000006183 181.0
YYD3_k127_5619530_2 Hydrolase CocE NonD family K06978 - - 0.000000000000000000000000000005797 121.0
YYD3_k127_5619950_0 LVIVD repeat - - - 2.269e-275 857.0
YYD3_k127_5622841_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006715 571.0
YYD3_k127_5622841_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 372.0
YYD3_k127_5622841_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 302.0
YYD3_k127_5622841_3 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000004753 215.0
YYD3_k127_5622841_4 PFAM FAD binding domain K11472 - - 0.00000000000000000000000000000000000000000001782 174.0
YYD3_k127_5622841_5 ATP-dependent protease La (LON) substrate-binding domain K01338 - 3.4.21.53 0.0000000000000000000000000000000000000005371 156.0
YYD3_k127_5622841_6 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000005648 79.0
YYD3_k127_5646532_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 475.0
YYD3_k127_5646532_1 PFAM amidohydrolase - - - 0.000001851 52.0
YYD3_k127_565042_0 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004803 257.0
YYD3_k127_565042_1 Acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000002194 203.0
YYD3_k127_565042_2 Domain of unknown function (DUF4010) - - - 0.000000000009057 67.0
YYD3_k127_5677401_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 315.0
YYD3_k127_5677401_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000002635 239.0
YYD3_k127_5677401_2 Roadblock/LC7 domain - - - 0.0000000000000000000000000000000000000000000000000000005335 201.0
YYD3_k127_5677401_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000009066 80.0
YYD3_k127_5677401_4 - - - - 0.0000000000007321 74.0
YYD3_k127_5677401_5 ADP-ribosylation factor family K06883 - - 0.0000000001335 64.0
YYD3_k127_5685865_0 Catalyzes the NADPH-dependent reduction of LysW - aminoadipate 6-phosphate to yield LysW -aminoadipate 6- semialdehyde K05829 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007243 423.0
YYD3_k127_5685865_1 PFAM ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp K05827 - 6.3.2.43 0.00000000000000000000000000000000000000000000004284 171.0
YYD3_k127_5697706_0 - - - - 0.00000000000000032 87.0
YYD3_k127_5700127_0 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 299.0
YYD3_k127_5700127_1 AsnC-type helix-turn-helix domain K05710 - - 0.000000000000000000000000000000000000000000000000000000000000000218 228.0
YYD3_k127_5700127_2 protoporphyrinogen oxidase activity K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000926 143.0
YYD3_k127_5705770_0 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005966 253.0
YYD3_k127_5705770_1 Matrixin - - - 0.00000000000000000001094 103.0
YYD3_k127_571960_0 NlpC/P60 family - - - 0.00000000000000000000000000000001632 140.0
YYD3_k127_571960_1 Sigma-54 factor interaction domain-containing protein K07713 - - 0.00000000000000000000000000000003217 132.0
YYD3_k127_5722725_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 407.0
YYD3_k127_5722725_1 Domain of unknown function (DUF4442) - - - 0.000000000000000000000000000000000000000005464 159.0
YYD3_k127_5722725_2 Belongs to the peptidase S8 family - - - 0.0000002181 55.0
YYD3_k127_5738408_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 541.0
YYD3_k127_5738408_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007829 419.0
YYD3_k127_5738408_2 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008733 277.0
YYD3_k127_5738408_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000009574 124.0
YYD3_k127_5738408_4 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.0001195 52.0
YYD3_k127_5749355_0 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 449.0
YYD3_k127_5749355_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 347.0
YYD3_k127_5753025_0 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004275 278.0
YYD3_k127_5753025_1 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001201 286.0
YYD3_k127_5753025_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.0000000000000000000000000000000000000000000005167 190.0
YYD3_k127_5753025_3 Belongs to the ompA family K03640 - - 0.00000000000000000000000000001774 126.0
YYD3_k127_5753025_4 Outer membrane lipoprotein - - - 0.0000000000000000000000000000608 130.0
YYD3_k127_5753025_5 TonB C terminal K03832 - - 0.0000000000003835 72.0
YYD3_k127_5758584_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 5e-324 1011.0
YYD3_k127_5758584_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000001001 105.0
YYD3_k127_5772427_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 5.077e-293 915.0
YYD3_k127_5772427_1 Peptidase dimerisation domain K12941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 532.0
YYD3_k127_5772427_2 cAMP biosynthetic process K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 429.0
YYD3_k127_5772427_3 PFAM FMN-dependent dehydrogenase K00101,K16422 - 1.1.2.3,1.1.3.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 383.0
YYD3_k127_5772427_4 Cytidine monophosphokinase K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000916 258.0
YYD3_k127_5772427_5 Prolyl oligopeptidase family K01303 - 3.4.19.1 0.000000000000008303 78.0
YYD3_k127_5777655_0 peptidase - - - 7.071e-222 707.0
YYD3_k127_5777655_1 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 589.0
YYD3_k127_5777655_2 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 426.0
YYD3_k127_5777655_3 Pantothenic acid kinase K00867 GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009207 411.0
YYD3_k127_5777655_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 368.0
YYD3_k127_5777655_5 Amidohydrolase family K06015 - 3.5.1.81 0.00000000000000000000000000000000000000000000000000000000000000003255 229.0
YYD3_k127_5777655_6 response to heat K07090 - - 0.0000000000000000000000000000000000000000164 162.0
YYD3_k127_5777655_7 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000006185 143.0
YYD3_k127_5777655_8 - - - - 0.0000000000000000005811 90.0
YYD3_k127_5777655_9 - - - - 0.0000000007506 65.0
YYD3_k127_5793561_0 thiolester hydrolase activity K06889 - - 0.000000000000000008135 95.0
YYD3_k127_5793561_1 Tetratricopeptide repeat K09527 - - 0.00000001638 66.0
YYD3_k127_5797879_0 Domain of unknown function (DUF5117) - - - 2.657e-257 821.0
YYD3_k127_5797879_1 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 1.325e-244 770.0
YYD3_k127_5797879_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 522.0
YYD3_k127_5797879_3 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007904 489.0
YYD3_k127_5797879_4 Peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009016 368.0
YYD3_k127_5797879_5 DinB family - - - 0.00000000000000000000000000000000000000000008811 162.0
YYD3_k127_5797879_6 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 - 2.1.1.13 0.00000000000000000000000000000003007 126.0
YYD3_k127_5797879_7 D-Ala-D-Ala carboxypeptidase 3 (S13) family - - - 0.00000000002402 76.0
YYD3_k127_580173_0 ASPIC UnbV domain protein - - - 0.0 1413.0
YYD3_k127_5809840_0 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000059 262.0
YYD3_k127_5809840_1 - K04096 - - 0.000000000000000000000000000000000000002462 156.0
YYD3_k127_5819607_0 Homeodomain-like domain K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 406.0
YYD3_k127_5819607_1 Catalyzes the release of L-lysine from LysW -gamma-L- lysine K05831 - - 0.000000000000000000000000000000000000000000000000001406 190.0
YYD3_k127_5823706_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008076 463.0
YYD3_k127_5823706_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000499 332.0
YYD3_k127_5823706_2 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000272 193.0
YYD3_k127_5826023_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 342.0
YYD3_k127_5826023_1 GAF domain-containing protein K08968 - 1.8.4.14 0.00000000000000000000000000867 113.0
YYD3_k127_5835860_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007216 586.0
YYD3_k127_5835860_1 PFAM Peptidase S10, serine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000001257 208.0
YYD3_k127_5836297_0 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004619 259.0
YYD3_k127_5836297_1 PFAM Protein kinase K03413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008693 256.0
YYD3_k127_5848310_0 creatininase K01470,K22232 - 3.5.2.10 0.0000000000000000000000000000000000000844 158.0
YYD3_k127_5848310_1 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000007598 150.0
YYD3_k127_5852251_0 Pfam:SusD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 536.0
YYD3_k127_5852251_1 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007684 428.0
YYD3_k127_5857281_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009527 524.0
YYD3_k127_5857281_1 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 503.0
YYD3_k127_5857281_2 Belongs to the glycosyl hydrolase 57 family K03406,K16149 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000001304 218.0
YYD3_k127_586107_0 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005854 371.0
YYD3_k127_586107_1 SMART von Willebrand factor, type A K07161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007326 309.0
YYD3_k127_586107_2 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000000000000000000000008606 115.0
YYD3_k127_586107_3 oxidoreductase activity, acting on CH-OH group of donors K09386 - - 0.00000000000000000000000001001 114.0
YYD3_k127_586107_4 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000001661 106.0
YYD3_k127_586724_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008527 454.0
YYD3_k127_586724_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006988 311.0
YYD3_k127_586724_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000005018 175.0
YYD3_k127_586724_3 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000002035 177.0
YYD3_k127_5877431_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000006418 248.0
YYD3_k127_5877431_1 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000309 143.0
YYD3_k127_5877431_2 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000001813 72.0
YYD3_k127_5877431_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00001077 47.0
YYD3_k127_5894054_0 Acyclic terpene utilisation family protein AtuA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006175 417.0
YYD3_k127_5894054_1 Belongs to the peptidase S8 family K01280 - 3.4.14.10 0.000000000000000000000000000000001868 147.0
YYD3_k127_5895776_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 3.468e-302 935.0
YYD3_k127_5895776_1 response regulator K07693 - - 0.000000633 58.0
YYD3_k127_5897412_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 316.0
YYD3_k127_5897412_1 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002207 264.0
YYD3_k127_5904135_0 MOSC domain - - - 0.000000000000000000000000000000000000000000000000000000000012 213.0
YYD3_k127_5904135_1 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000003212 109.0
YYD3_k127_5904135_2 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000000002648 101.0
YYD3_k127_5904135_3 Gram-negative bacterial TonB protein C-terminal - - - 0.0000000000000000004638 96.0
YYD3_k127_5904135_4 Carboxypeptidase regulatory-like domain - - - 0.000000000000648 83.0
YYD3_k127_5904359_0 3' exoribonuclease, RNase T-like K03656,K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 413.0
YYD3_k127_5904359_1 PFAM peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 325.0
YYD3_k127_5904359_2 PFAM Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000001637 236.0
YYD3_k127_5904359_3 MotA/TolQ/ExbB proton channel family K03562 - - 0.00000000000000000000000000000000000000000000000000201 190.0
YYD3_k127_5904359_4 PFAM diacylglycerol kinase catalytic region - - - 0.000000000000000000000000000000000000000000004935 175.0
YYD3_k127_5904359_5 cutC copper transporter homolog (E. coli) K06201 GO:0000003,GO:0000041,GO:0002119,GO:0002164,GO:0003008,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0007275,GO:0007600,GO:0007610,GO:0008150,GO:0009791,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0018991,GO:0019098,GO:0019233,GO:0022414,GO:0022607,GO:0030001,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0035264,GO:0040007,GO:0040025,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046688,GO:0046872,GO:0046914,GO:0048513,GO:0048569,GO:0048589,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050801,GO:0050877,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0098771 - 0.000000000000000000000000000000000000003166 153.0
YYD3_k127_5904359_6 - - - - 0.0000000000000000000005592 101.0
YYD3_k127_5904359_7 Cell wall-active antibiotics response 4TMS YvqF - - - 0.000000000000001054 85.0
YYD3_k127_5904359_8 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000000000000006053 81.0
YYD3_k127_5904359_9 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000001064 78.0
YYD3_k127_5922091_0 PFAM Cache K08738 - - 0.000000000000000000000000000000000000000000000000000000000000000001003 251.0
YYD3_k127_5922091_1 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000000000000000007537 209.0
YYD3_k127_5922091_2 PFAM Cache K08738 - - 0.00000000000000000000000000000000000000000000000000000000008687 226.0
YYD3_k127_5922091_3 Single Cache domain 2 K07647 - 2.7.13.3 0.000000000000000000000000000000000000000000000002513 195.0
YYD3_k127_5922091_4 Single Cache domain 2 K07647 - 2.7.13.3 0.000000000000000000000000000000000000000002808 176.0
YYD3_k127_5922376_0 heme-copper terminal oxidase activity K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 565.0
YYD3_k127_5922376_1 SCO1/SenC K07152 - - 0.0000000000001157 85.0
YYD3_k127_5923653_0 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 328.0
YYD3_k127_5923653_1 lactoylglutathione lyase activity K01759,K03827 - 4.4.1.5 0.000000000000000000000000000000000000000000004313 166.0
YYD3_k127_5923653_2 -acetyltransferase K03823 - 2.3.1.183 0.00000000000000000000000000000000000003266 149.0
YYD3_k127_5929024_0 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 434.0
YYD3_k127_5929024_1 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide - - - 0.0000000000000000000000000000000000716 134.0
YYD3_k127_5929024_2 PFAM D-aminoacylase, C-terminal region K06015 - 3.5.1.81 0.0000000000000000000000000009355 112.0
YYD3_k127_5933017_0 Sortilin, neurotensin receptor 3, - - - 0.0 1075.0
YYD3_k127_5933017_1 SURF1 family K14998 - - 0.000000000000000000000000004632 121.0
YYD3_k127_5933017_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000008341 68.0
YYD3_k127_595446_0 Aldehyde dehydrogenase family K00294 - 1.2.1.88 3.767e-200 632.0
YYD3_k127_5966927_0 Glycosyl transferase family 2 K08301 - - 0.0000000000000000000000000000000000000000000000000000002532 202.0
YYD3_k127_5966927_1 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000000006929 185.0
YYD3_k127_5966927_2 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000006248 162.0
YYD3_k127_5966927_3 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.000000000000000000002743 101.0
YYD3_k127_5980522_0 Di-haem oxidoreductase, putative peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 376.0
YYD3_k127_5980522_1 sister chromatid segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 309.0
YYD3_k127_5980522_2 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.00000000000000000000000000000000000000000000000000000000000009675 218.0
YYD3_k127_5980522_3 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 0.0000000000000000000000000000002338 125.0
YYD3_k127_5980522_4 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.0000000000000000000281 98.0
YYD3_k127_6008767_0 Cyclomaltodextrinase, N-terminal K21575 - 3.2.1.135 1.328e-277 865.0
YYD3_k127_6008767_1 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000002043 129.0
YYD3_k127_6026031_0 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000001344 205.0
YYD3_k127_6026031_1 Domain of unknown function (DUF374) K09778 - - 0.000000000000000000000000000000000004796 147.0
YYD3_k127_6026031_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000009479 83.0
YYD3_k127_6026031_3 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.0001548 46.0
YYD3_k127_6047926_0 DNA restriction-modification system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 457.0
YYD3_k127_6047926_1 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006658 354.0
YYD3_k127_6047926_2 Glycosyl transferase family 21 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002022 284.0
YYD3_k127_6047926_3 HAD-hyrolase-like K06019 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000004491 229.0
YYD3_k127_6047926_4 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.00000000000000000000000000000000000000009613 154.0
YYD3_k127_6047926_5 Uncharacterized ACR, COG1993 K06199,K09137 - - 0.000000000000000000000000000000000472 135.0
YYD3_k127_6047926_6 SNF2 family N-terminal domain - - - 0.0000000000000000000000000000003839 142.0
YYD3_k127_6053795_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005209 480.0
YYD3_k127_6053795_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 456.0
YYD3_k127_6053795_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009055,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0022900,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000007524 250.0
YYD3_k127_6053795_3 - - - - 0.000000000000000000000000000001501 123.0
YYD3_k127_6053795_4 of the major facilitator superfamily - - - 0.00000000000000000000000001076 117.0
YYD3_k127_6053795_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000001306 92.0
YYD3_k127_6055223_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 1.821e-280 890.0
YYD3_k127_6055223_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 1.371e-203 654.0
YYD3_k127_6055223_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005902 467.0
YYD3_k127_6055223_3 Amino acid permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001657 276.0
YYD3_k127_6055223_4 Bacterial Ig-like domain - - - 0.000000000000000000000000000000000000000000000008364 190.0
YYD3_k127_6055223_5 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000003776 165.0
YYD3_k127_6055223_6 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000001132 129.0
YYD3_k127_6057429_0 DNA polymerase alpha chain like domain K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 475.0
YYD3_k127_6057429_1 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 391.0
YYD3_k127_6057429_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005129 280.0
YYD3_k127_6057429_3 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000001689 262.0
YYD3_k127_6057429_4 Histone deacetylase domain - - - 0.000000009679 57.0
YYD3_k127_6068408_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005643 360.0
YYD3_k127_6068408_1 Thi4 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 322.0
YYD3_k127_6072106_0 efflux transmembrane transporter activity - - - 5.996e-240 756.0
YYD3_k127_6081981_0 Domain of unknown function (DUF5117) - - - 2.052e-287 906.0
YYD3_k127_6081981_1 Ferric reductase like transmembrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005368 325.0
YYD3_k127_6081981_10 - - - - 0.0000000000000000000000000000003519 132.0
YYD3_k127_6081981_12 - - - - 0.0000000001746 66.0
YYD3_k127_6081981_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009308 234.0
YYD3_k127_6081981_3 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000001683 237.0
YYD3_k127_6081981_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000003598 216.0
YYD3_k127_6081981_5 Acyl-transferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000008569 217.0
YYD3_k127_6081981_6 Beta-lactamase class C and other penicillin binding - - - 0.0000000000000000000000000000000000000000000000000001241 194.0
YYD3_k127_6081981_7 Sigma-70, region 4 K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.00000000000000000000000000000000000000000000000000209 190.0
YYD3_k127_6081981_8 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000808 153.0
YYD3_k127_6081981_9 DinB family - - - 0.0000000000000000000000000000001524 131.0
YYD3_k127_6086722_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 5.59e-308 955.0
YYD3_k127_6086722_1 ATPase or kinase K06925 - - 0.0000000000000000000162 95.0
YYD3_k127_609771_0 Formate dehydrogenase alpha subunit K00123,K05299 - 1.17.1.10,1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 595.0
YYD3_k127_6102927_0 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000007895 190.0
YYD3_k127_6102927_1 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000003766 115.0
YYD3_k127_6102927_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000299 96.0
YYD3_k127_6102927_3 Glycoprotease family K14742 - - 0.00000000000001635 82.0
YYD3_k127_6102927_4 LysM domain - - - 0.0000000000008213 79.0
YYD3_k127_6111737_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 506.0
YYD3_k127_6111737_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006533 365.0
YYD3_k127_6111737_2 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000001489 176.0
YYD3_k127_6111737_3 MFP subunit - - - 0.000000000146 62.0
YYD3_k127_6112295_0 Permease for cytosine/purines, uracil, thiamine, allantoin K03457 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 484.0
YYD3_k127_6112295_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009625 416.0
YYD3_k127_6112295_2 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001044 278.0
YYD3_k127_6112295_3 CO dehydrogenase flavoprotein domain protein K03519 - 1.2.5.3 0.000000000000000000000000000000000000001626 152.0
YYD3_k127_6119031_0 ABC-type sugar transport systems, permease components K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 369.0
YYD3_k127_6119031_1 PFAM Glycoside hydrolase 15-related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 361.0
YYD3_k127_6119031_2 Binding-protein-dependent transport system inner membrane component K05815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007917 333.0
YYD3_k127_6119031_3 ABC transporter substrate-binding protein K02027 - - 0.00000001284 57.0
YYD3_k127_6137324_0 Sodium:neurotransmitter symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003834 547.0
YYD3_k127_6137324_1 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000783 307.0
YYD3_k127_6137324_2 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000001292 266.0
YYD3_k127_6137324_3 Predicted Zn-dependent protease (DUF2268) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001992 267.0
YYD3_k127_6137324_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006027 260.0
YYD3_k127_6137324_5 Protein of unknown function (DUF3011) - - - 0.0000000000000000000000000000000000000000000000000000001327 207.0
YYD3_k127_6137324_6 Helix-hairpin-helix motif K14162 - 2.7.7.7 0.0000000000000000000272 98.0
YYD3_k127_613821_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 592.0
YYD3_k127_613821_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 566.0
YYD3_k127_613821_2 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 413.0
YYD3_k127_613821_3 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007344 374.0
YYD3_k127_613821_4 Inositol monophosphatase family K01092 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043167,GO:0043169,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.0000000000000000002554 91.0
YYD3_k127_6140412_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 3.814e-273 854.0
YYD3_k127_6140412_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 620.0
YYD3_k127_6140412_2 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000001451 159.0
YYD3_k127_6140412_3 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000002124 127.0
YYD3_k127_6140412_4 Peptidase family M50 K06402 - - 0.0000000000000000000000000000002879 139.0
YYD3_k127_615759_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000007996 124.0
YYD3_k127_615759_1 hyperosmotic response - - - 0.000000000000000000000000578 116.0
YYD3_k127_615759_2 - - - - 0.0000000004878 64.0
YYD3_k127_615759_3 phosphorelay signal transduction system K07714 - - 0.000000007852 57.0
YYD3_k127_6171265_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 550.0
YYD3_k127_6171265_1 Domain of unknown function (DUF3471) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 470.0
YYD3_k127_6171265_2 Domain of unknown function (DUF3471) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 470.0
YYD3_k127_6171265_3 Domain of unknown function (DUF3471) K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 466.0
YYD3_k127_6171265_4 Aldehyde dehydrogenase family K00140,K22187 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009421 333.0
YYD3_k127_6171265_5 peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000004015 212.0
YYD3_k127_6178461_0 HD superfamily hydrolase involved in NAD metabolism K00950 - 2.7.6.3 0.00000000000000000000000000000000000000000000000001147 185.0
YYD3_k127_6178461_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000002992 123.0
YYD3_k127_6178461_2 LytR cell envelope-related transcriptional attenuator - - - 0.0000000000006943 78.0
YYD3_k127_6178461_3 LytR cell envelope-related transcriptional attenuator - - - 0.0003718 44.0
YYD3_k127_6206043_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 531.0
YYD3_k127_6206043_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006303 291.0
YYD3_k127_6206043_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001131 273.0
YYD3_k127_6206043_3 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000168 228.0
YYD3_k127_6206043_4 sequence-specific DNA binding K03719 - - 0.00000000000000000000000000000000000000000000001583 177.0
YYD3_k127_6210954_0 E1-E2 ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004556 291.0
YYD3_k127_6210954_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000002564 242.0
YYD3_k127_6210954_2 Histidine kinase K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000003765 212.0
YYD3_k127_6210954_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000001009 89.0
YYD3_k127_6210954_4 Protein of unknown function (DUF2892) - - - 0.00000002064 58.0
YYD3_k127_6210954_5 Belongs to the universal stress protein A family - - - 0.0001924 52.0
YYD3_k127_6212041_0 AMP-binding enzyme C-terminal domain K00666 - - 4.781e-238 747.0
YYD3_k127_6212041_1 permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004129 312.0
YYD3_k127_6212041_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000615 243.0
YYD3_k127_6212041_3 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000002013 213.0
YYD3_k127_6212041_4 SnoaL-like domain - - - 0.0000000000000000000000000000000001689 137.0
YYD3_k127_6212041_5 N-Acyl-D-aspartate D-glutamate deacylase K01465 - 3.5.2.3 0.000000000000000000000000000281 121.0
YYD3_k127_6252930_0 Membrane dipeptidase (Peptidase family M19) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 401.0
YYD3_k127_6252930_1 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000008102 234.0
YYD3_k127_6252930_2 negative regulation of transcription, DNA-templated - GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006974,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000002171 134.0
YYD3_k127_6265035_0 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000000000000000000002387 203.0
YYD3_k127_6265035_1 Ribosomal protein S2 K02967 - - 0.000000000000000000000000000000000000000000000000000002353 195.0
YYD3_k127_6265035_2 Ribosomal protein S9/S16 K02996 - - 0.000000000000000000000000000000000000000000000000003281 187.0
YYD3_k127_6265035_3 Biotin-lipoyl like - - - 0.000000007796 57.0
YYD3_k127_6265372_0 Amidohydrolase family - - - 0.0 1181.0
YYD3_k127_6265372_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 290.0
YYD3_k127_6265372_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000002131 137.0
YYD3_k127_6265372_3 - - - - 0.000000000000000001392 99.0
YYD3_k127_6279059_0 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 2.747e-301 940.0
YYD3_k127_6279059_1 Aminotransferase class-V - - - 6.902e-196 619.0
YYD3_k127_6279059_2 glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 496.0
YYD3_k127_6279059_3 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 469.0
YYD3_k127_6279059_4 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 442.0
YYD3_k127_6279059_5 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002951 279.0
YYD3_k127_6279059_6 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002166 259.0
YYD3_k127_6279059_7 - - - - 0.00000000000000000000000000000001865 136.0
YYD3_k127_6279059_8 transmembrane transport - - - 0.00000000000000000000000000000265 130.0
YYD3_k127_6279059_9 haloacid dehalogenase-like hydrolase K07026 - 3.1.3.70 0.0000000000000000000003538 104.0
YYD3_k127_6284334_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 576.0
YYD3_k127_6284334_1 Multicopper oxidase K00368 - 1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000006902 252.0
YYD3_k127_6284334_2 - - - - 0.0000000000000000000000000000001463 128.0
YYD3_k127_6284334_3 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000008756 130.0
YYD3_k127_6284334_4 2 iron, 2 sulfur cluster binding K13643 - - 0.0000000000000000000218 96.0
YYD3_k127_6324399_0 MFS/sugar transport protein K16211 - - 1.498e-194 613.0
YYD3_k127_6324399_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000009012 155.0
YYD3_k127_6326998_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.928e-242 755.0
YYD3_k127_6326998_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009548 471.0
YYD3_k127_6326998_2 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 435.0
YYD3_k127_6326998_3 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001362 263.0
YYD3_k127_6326998_4 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000000000000000000001733 194.0
YYD3_k127_6326998_5 AraC-like ligand binding domain - - - 0.0000000000000000000000000000000000000000000000002999 178.0
YYD3_k127_6326998_6 - - - - 0.00000000000000000000000000000000000026 152.0
YYD3_k127_6326998_7 CGNR zinc finger - - - 0.0000000000000000000000000000000000009176 147.0
YYD3_k127_6333900_0 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 352.0
YYD3_k127_6333900_1 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000000003128 222.0
YYD3_k127_6333900_2 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000000522 196.0
YYD3_k127_6333900_4 HEAT repeats - - - 0.00000000000000000000000000000000001288 151.0
YYD3_k127_6333900_5 metal-sulfur cluster biosynthetic - - - 0.0000000000000000000000000001493 117.0
YYD3_k127_6333900_6 4Fe-4S binding domain - - - 0.0000000000000000000000000003614 113.0
YYD3_k127_6342213_0 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 361.0
YYD3_k127_6342213_1 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 326.0
YYD3_k127_6359549_0 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009248 547.0
YYD3_k127_6359549_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000004419 217.0
YYD3_k127_6359549_2 response regulator K02477 - - 0.0000000000000000000000000000000000000000000000000002618 202.0
YYD3_k127_6359549_3 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000006848 154.0
YYD3_k127_6359549_4 MOSC domain - - - 0.000000000000000000000000000003483 123.0
YYD3_k127_6366524_0 acetylornithine and succinylornithine aminotransferase K00821,K05830 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 381.0
YYD3_k127_6366524_1 Belongs to the acetylglutamate kinase family. LysZ subfamily K05828 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002046 334.0
YYD3_k127_6366524_2 Catalyzes the release of L-lysine from LysW -gamma-L- lysine K05831 - - 0.000000000000000000000000000000000000000000000000006549 186.0
YYD3_k127_6366524_3 Catalyzes the NADPH-dependent reduction of LysW - aminoadipate 6-phosphate to yield LysW -aminoadipate 6- semialdehyde K05829 - - 0.000000000000548 68.0
YYD3_k127_637037_1 Mismatch repair ATPase (MutS family) - - - 0.00002712 53.0
YYD3_k127_6374322_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000366 278.0
YYD3_k127_6374322_1 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002828 248.0
YYD3_k127_6374322_2 RibD C-terminal domain - - - 0.0005016 42.0
YYD3_k127_6380658_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 484.0
YYD3_k127_6380658_1 Amidohydrolase family - - - 0.00000000000000000000000002963 117.0
YYD3_k127_6387998_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.00000000000000000000000000000000000000000000000009868 189.0
YYD3_k127_6387998_1 Lipopolysaccharide-assembly - - - 0.0000000000000000000000000000000000000134 153.0
YYD3_k127_6387998_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000002602 65.0
YYD3_k127_6387998_3 - - - - 0.000000536 60.0
YYD3_k127_639349_0 Glycosyl transferase family group 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 565.0
YYD3_k127_639349_1 domain protein - - - 0.0000000000000000000000000000000000000000000000000000004607 205.0
YYD3_k127_639349_2 - - - - 0.0000000000000000000000000000000000000000000000000000005784 212.0
YYD3_k127_639349_3 - - - - 0.000000000000000000000000000000267 126.0
YYD3_k127_639349_4 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000006798 91.0
YYD3_k127_6397265_0 Belongs to the UPF0061 (SELO) family K08997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 524.0
YYD3_k127_6397265_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000001337 228.0
YYD3_k127_6397265_2 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000000000000000004625 200.0
YYD3_k127_6397265_3 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides K08281 - 3.5.1.19 0.00000000000000000001579 98.0
YYD3_k127_6397265_4 - - - - 0.00000001883 65.0
YYD3_k127_6406890_0 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 404.0
YYD3_k127_6406890_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.000000000000000000000000000000000000000000000000006918 187.0
YYD3_k127_6419876_0 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 362.0
YYD3_k127_6419876_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 304.0
YYD3_k127_6419876_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000009389 110.0
YYD3_k127_6419876_3 Sigma-70, region 4 K03088 - - 0.00000000000000002482 91.0
YYD3_k127_6422386_0 4Fe-4S single cluster domain K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 473.0
YYD3_k127_6422386_1 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV K08685 - 1.4.9.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 416.0
YYD3_k127_6422386_2 Quinohemoprotein amine dehydrogenase, gamma subunit - - - 0.00000000000000000000000000000000000000000000001565 177.0
YYD3_k127_6422386_3 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000004254 183.0
YYD3_k127_6422386_4 ABC transporter transmembrane region K06147 - - 0.0000000000000000000000000000000000002891 147.0
YYD3_k127_6422386_5 Tryptophan halogenase K21256 - - 0.00000000000000000000000000000000008601 150.0
YYD3_k127_6432489_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 554.0
YYD3_k127_6432489_1 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K00335,K18331 - 1.12.1.3,1.6.5.3 0.00000000006096 69.0
YYD3_k127_6451037_0 Thymidine kinase K00857 - 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007711 279.0
YYD3_k127_6451037_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000002397 102.0
YYD3_k127_6451037_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000007225 49.0
YYD3_k127_6451086_0 Phospholipase D. Active site motifs. K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006978 335.0
YYD3_k127_6451086_1 - - - - 0.000000000000000000000000000000000000000000000000009496 192.0
YYD3_k127_6451689_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 541.0
YYD3_k127_6451689_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000007769 184.0
YYD3_k127_6463654_0 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000005248 233.0
YYD3_k127_6463654_1 Protein of unknown function (DUF433) - - - 0.00006518 54.0
YYD3_k127_6466727_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004656 299.0
YYD3_k127_6466727_1 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000001138 248.0
YYD3_k127_6466727_2 Thioredoxin-like - - - 0.0000000000001908 75.0
YYD3_k127_6471680_0 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001845 263.0
YYD3_k127_6471680_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000006463 237.0
YYD3_k127_6471680_2 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000001453 174.0
YYD3_k127_6471680_3 Alpha beta hydrolase - - - 0.00000001202 59.0
YYD3_k127_6479404_0 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 411.0
YYD3_k127_6479404_1 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000002313 160.0
YYD3_k127_6509194_0 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009929 349.0
YYD3_k127_6509194_1 cobalamin-transporting ATPase activity K02014,K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001735 257.0
YYD3_k127_6509194_2 - - - - 0.000000000001587 71.0
YYD3_k127_6518153_0 Prolyl oligopeptidase family - - - 9.377e-208 661.0
YYD3_k127_6541867_0 (ABC) transporter K06147,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000003841 222.0
YYD3_k127_6541867_1 PBS lyase HEAT-like repeat - - - 0.00000000000000000000000000000000156 140.0
YYD3_k127_6541867_2 Domain of unknown function (DUF1854) - - - 0.00000002824 62.0
YYD3_k127_6541867_3 PBS lyase HEAT-like repeat - - - 0.0005772 49.0
YYD3_k127_655442_0 DNA-directed 5'-3' RNA polymerase activity K03043,K13797 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 522.0
YYD3_k127_656510_0 Thiolase, C-terminal domain K00626,K07508 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000759 454.0
YYD3_k127_656510_1 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 375.0
YYD3_k127_656510_2 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002567 342.0
YYD3_k127_656510_3 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 301.0
YYD3_k127_656510_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000001077 189.0
YYD3_k127_656510_5 Belongs to the NiCoT transporter (TC 2.A.52) family K07241 - - 0.0000000000000000000000001406 116.0
YYD3_k127_656510_6 - - - - 0.0000000000000000000002384 106.0
YYD3_k127_656510_7 - - - - 0.000000000000004909 83.0
YYD3_k127_656510_8 Conserved TM helix - - - 0.000000000000007367 87.0
YYD3_k127_6587507_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 505.0
YYD3_k127_6587507_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 415.0
YYD3_k127_6587507_2 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000000000000001315 161.0
YYD3_k127_6587507_3 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000000000004195 153.0
YYD3_k127_6587507_4 Aminotransferase class-V K04487 - 2.8.1.7 0.00000000000000000000000000000006706 130.0
YYD3_k127_6587507_5 MacB-like periplasmic core domain K02004 - - 0.0000000001244 62.0
YYD3_k127_6593007_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 368.0
YYD3_k127_6593007_1 signal transduction histidine kinase - - - 0.000000000000000000000000000000001046 141.0
YYD3_k127_660269_0 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 485.0
YYD3_k127_660269_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 439.0
YYD3_k127_660269_10 acylphosphatase activity K01512 - 3.6.1.7 0.000000000000004912 80.0
YYD3_k127_660269_11 COG0457 FOG TPR repeat - - - 0.00000001025 65.0
YYD3_k127_660269_2 Flavin-binding monooxygenase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007792 439.0
YYD3_k127_660269_3 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 336.0
YYD3_k127_660269_4 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 307.0
YYD3_k127_660269_5 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002877 267.0
YYD3_k127_660269_6 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000001307 246.0
YYD3_k127_660269_7 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.00000000000000000000000000000000000000000000005556 177.0
YYD3_k127_660269_8 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000001574 165.0
YYD3_k127_660269_9 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000266 155.0
YYD3_k127_6614292_0 MgsA AAA+ ATPase C terminal K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 522.0
YYD3_k127_6614292_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007342 437.0
YYD3_k127_6614292_2 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000001253 214.0
YYD3_k127_6614292_3 transporter K07238,K11021,K16267 - - 0.0000000000000000000000000000000000000000000000001687 196.0
YYD3_k127_662523_0 ATP-dependent helicase K03579 - 3.6.4.13 4.29e-274 866.0
YYD3_k127_662523_1 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000001196 193.0
YYD3_k127_662523_2 COG0457 FOG TPR repeat - - - 0.00000000001734 65.0
YYD3_k127_662523_3 PrcB C-terminal - - - 0.000003464 56.0
YYD3_k127_6627461_0 protein conserved in bacteria - - - 0.000000000000000004499 96.0
YYD3_k127_6627461_1 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.0000000000009715 73.0
YYD3_k127_6629622_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1018.0
YYD3_k127_6629622_1 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 308.0
YYD3_k127_6629622_2 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0008316 44.0
YYD3_k127_6630213_0 ABC transporter transmembrane region K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 320.0
YYD3_k127_6630213_1 DUF based on E. rectale Gene description (DUF3880) K06320 - - 0.0000000000000000000000000002374 128.0
YYD3_k127_6630213_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000855 74.0
YYD3_k127_6631190_0 H( )-stimulated, divalent metal cation uptake system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 395.0
YYD3_k127_6631190_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 389.0
YYD3_k127_6631190_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 338.0
YYD3_k127_6631190_3 Belongs to the UPF0061 (SELO) family K08997 - - 0.0000000000003223 70.0
YYD3_k127_6633059_0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006612 442.0
YYD3_k127_6633059_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000001698 214.0
YYD3_k127_6635066_0 Phosphorylase superfamily K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004233 276.0
YYD3_k127_6635066_1 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004557 281.0
YYD3_k127_6635066_2 Na dependent nucleoside transporter K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000004196 233.0
YYD3_k127_6635066_3 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000001794 211.0
YYD3_k127_6635066_4 RNA 2'-O ribose methyltransferase substrate binding K03437 - - 0.00000000000000000000000000000000000000000000000000002104 197.0
YYD3_k127_6635066_5 Zn peptidase - - - 0.00000000000000000000000000000000000000000000006171 181.0
YYD3_k127_6650571_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 360.0
YYD3_k127_6650571_1 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.0000000000000000000000000002131 121.0
YYD3_k127_6650571_2 Biotin-lipoyl like K02005 - - 0.000009296 57.0
YYD3_k127_6651570_0 - - - - 0.000000000000000000000000000000000000000000000001271 188.0
YYD3_k127_6651570_1 Sugar-specific transcriptional regulator TrmB - - - 0.000000001304 67.0
YYD3_k127_6651570_2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000768 53.0
YYD3_k127_6658922_0 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 445.0
YYD3_k127_6658922_1 Belongs to the serpin family K13963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003131 257.0
YYD3_k127_6658922_2 Putative lumazine-binding - - - 0.000000000000000000000000000000000003766 142.0
YYD3_k127_6662705_0 Dienelactone hydrolase family - - - 4.542e-283 876.0
YYD3_k127_6668312_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000007781 219.0
YYD3_k127_6668312_1 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000007202 155.0
YYD3_k127_6668312_2 2-oxoglutarate dehydrogenase C-terminal K00164 - 1.2.4.2 0.00000546 48.0
YYD3_k127_6668312_3 efflux transmembrane transporter activity - - - 0.0004293 44.0
YYD3_k127_66730_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 508.0
YYD3_k127_66730_1 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 362.0
YYD3_k127_66730_2 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 356.0
YYD3_k127_66730_3 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001052 274.0
YYD3_k127_66730_4 CHASE3 domain - - - 0.0000000000000000000000000000000000000000000000000000000001504 216.0
YYD3_k127_66730_5 Regulatory protein, FmdB family - - - 0.0000000000000000001117 92.0
YYD3_k127_6675723_0 FabA-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 488.0
YYD3_k127_6675723_1 PFAM 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III K22317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000808 480.0
YYD3_k127_6696952_0 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 443.0
YYD3_k127_6696952_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002875 252.0
YYD3_k127_671223_0 Pfam Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 406.0
YYD3_k127_671223_1 DinB superfamily - - - 0.0000006207 59.0
YYD3_k127_6716098_0 DEAD DEAH box K03724 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 328.0
YYD3_k127_6716098_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000001629 153.0
YYD3_k127_672590_0 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009453 250.0
YYD3_k127_672590_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000002059 210.0
YYD3_k127_6755421_0 gluconolactonase activity K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 512.0
YYD3_k127_6755421_1 Cupin 2, conserved barrel domain protein K11477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008958 264.0
YYD3_k127_6759667_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.403e-283 888.0
YYD3_k127_6759667_1 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005649 247.0
YYD3_k127_6759667_2 EVE domain - - - 0.0000000000000000000000000000000000000000000000006546 178.0
YYD3_k127_6759667_3 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0000000000000001836 79.0
YYD3_k127_6759667_4 Domain of unknown function (DUF4342) - - - 0.0000000000000003578 83.0
YYD3_k127_6761367_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 589.0
YYD3_k127_6761367_1 Domain of unknown function (DUF4198) - - - 0.0000000000000000000000000000000000000000000000000003298 196.0
YYD3_k127_6761367_2 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000003877 168.0
YYD3_k127_6761367_3 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.00000000000000000000000000000000000000000001358 164.0
YYD3_k127_6762638_0 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 340.0
YYD3_k127_6762638_1 heat shock protein binding - - - 0.00000000000000000000000000000167 128.0
YYD3_k127_6769280_0 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000002093 206.0
YYD3_k127_6769280_1 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000001945 175.0
YYD3_k127_6769280_2 DNA-templated transcription, initiation - - - 0.000000000000000000000000000000000000000000000008136 189.0
YYD3_k127_6769280_3 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000002966 131.0
YYD3_k127_6769280_4 - - - - 0.000000000000000007985 93.0
YYD3_k127_6834411_0 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003776 351.0
YYD3_k127_6834411_1 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 301.0
YYD3_k127_6834411_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000001404 269.0
YYD3_k127_6834411_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000008361 243.0
YYD3_k127_6834411_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.00000000000000000000000000000000000000002531 157.0
YYD3_k127_6834411_5 Thioredoxin-like domain K03671 - - 0.000000000000000000000000000000000000007979 149.0
YYD3_k127_6834411_6 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division K20543 - - 0.000000000000000000000000000005772 137.0
YYD3_k127_6834411_7 PFAM oxidoreductase FAD NAD(P)-binding domain protein K02641 GO:0005575,GO:0005622,GO:0005623,GO:0009579,GO:0016020,GO:0034357,GO:0042651,GO:0044424,GO:0044436,GO:0044464 1.18.1.2 0.00000000000000000004804 98.0
YYD3_k127_6834411_8 - - - - 0.00000000000004463 76.0
YYD3_k127_6834411_9 - - - - 0.000004233 58.0
YYD3_k127_6843260_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 3.941e-214 674.0
YYD3_k127_6843260_1 (ABC) transporter K06147,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 339.0
YYD3_k127_6849761_0 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 450.0
YYD3_k127_6849761_1 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 367.0
YYD3_k127_6849761_2 PFAM ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000544 299.0
YYD3_k127_6849761_3 - - - - 0.000000000000000000000000000000000000106 153.0
YYD3_k127_6849761_4 DinB family - - - 0.0000000000000000000001621 104.0
YYD3_k127_6853494_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 559.0
YYD3_k127_6853494_1 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 468.0
YYD3_k127_6853494_2 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000002796 218.0
YYD3_k127_6853494_3 Mazg nucleotide pyrophosphohydrolase K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000001155 175.0
YYD3_k127_6853494_4 - - - - 0.000000000000000000000000000000000005305 149.0
YYD3_k127_6853494_5 - - - - 0.000000001382 66.0
YYD3_k127_6862713_0 lysine biosynthetic process via aminoadipic acid - - - 2.854e-244 783.0
YYD3_k127_6862713_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 476.0
YYD3_k127_6862713_11 CHAD - - - 0.00000004287 59.0
YYD3_k127_6862713_2 Putative zinc-binding metallo-peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 471.0
YYD3_k127_6862713_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004731,GO:0006082,GO:0006139,GO:0006144,GO:0006168,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009112,GO:0009113,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0017061,GO:0017144,GO:0018130,GO:0019438,GO:0019509,GO:0019752,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 412.0
YYD3_k127_6862713_4 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 401.0
YYD3_k127_6862713_5 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005241 375.0
YYD3_k127_6862713_6 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001466 289.0
YYD3_k127_6862713_7 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000004773 246.0
YYD3_k127_6862713_8 Phosphoribosyl transferase domain K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000004611 241.0
YYD3_k127_6862713_9 PFAM class II aldolase adducin family protein K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000001524 212.0
YYD3_k127_686708_0 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000004542 202.0
YYD3_k127_686708_1 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000000000001239 138.0
YYD3_k127_686708_2 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000502 120.0
YYD3_k127_686708_3 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.0002654 48.0
YYD3_k127_6882961_0 MatE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 570.0
YYD3_k127_69385_0 Putative glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 592.0
YYD3_k127_69385_1 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000003402 148.0
YYD3_k127_69385_2 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000005177 135.0
YYD3_k127_700494_0 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 328.0
YYD3_k127_700494_1 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 344.0
YYD3_k127_700494_2 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000002131 269.0
YYD3_k127_700494_3 Sigma-70, region 4 K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.00000000000000000000000000000001292 134.0
YYD3_k127_706318_0 Low affinity iron permease - - - 0.00000000000000000000000000000000000000000000929 168.0
YYD3_k127_706318_1 - - - - 0.00000000000000000000000000000001074 127.0
YYD3_k127_706318_2 - - - - 0.0000000000000003263 85.0
YYD3_k127_706318_3 - - - - 0.000000000000001146 85.0
YYD3_k127_706318_4 - - - - 0.0000008862 55.0
YYD3_k127_715888_0 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 3.34e-233 737.0
YYD3_k127_715888_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 567.0
YYD3_k127_715888_2 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 535.0
YYD3_k127_715888_3 Peptidase M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000006027 235.0
YYD3_k127_715888_4 TIGRFAM competence protein ComEA helix-hairpin-helix repeat K02237 - - 0.0000000000000002263 87.0
YYD3_k127_728459_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 491.0
YYD3_k127_728459_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004825 426.0
YYD3_k127_728459_2 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 371.0
YYD3_k127_728459_3 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000005069 271.0
YYD3_k127_736573_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003394 331.0
YYD3_k127_739128_0 DNA polymerase beta thumb K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 614.0
YYD3_k127_739128_1 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001651 255.0
YYD3_k127_739128_2 - - - - 0.000000000000000000000000000000000000000000000000000002455 196.0
YYD3_k127_739128_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000001891 116.0
YYD3_k127_739128_4 Uncharacterized conserved protein (DUF2277) - - - 0.00000000000000003206 83.0
YYD3_k127_752599_0 glyoxalase bleomycin resistance protein dioxygenase K15975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009663 454.0
YYD3_k127_752599_1 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 301.0
YYD3_k127_752599_2 - - - - 0.0000000000000000000000000000000000000000000000000000000009512 208.0
YYD3_k127_752599_3 L,D-transpeptidase catalytic domain K21470 - - 0.000000000000000000000000007015 122.0
YYD3_k127_752599_4 Protein conserved in bacteria - - - 0.00000000000000000005278 100.0
YYD3_k127_752599_5 Belongs to the universal stress protein A family - - - 0.00000000000001108 85.0
YYD3_k127_752599_6 OmpA family K02557,K03286 - - 0.0000006764 55.0
YYD3_k127_759179_0 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 456.0
YYD3_k127_759179_1 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00008055 49.0
YYD3_k127_77001_0 Protein conserved in bacteria - - - 1.717e-201 635.0
YYD3_k127_77001_1 ABC transporter substrate-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 437.0
YYD3_k127_790708_0 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009704 361.0
YYD3_k127_790708_1 Dihydrodipicolinate synthetase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005584 301.0
YYD3_k127_790708_2 Peptidase family M50 - - - 0.000000000000000000007423 96.0
YYD3_k127_796789_0 arylsulfatase A - - - 0.000000000000000000000000000000000000454 156.0
YYD3_k127_796789_1 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000006871 74.0
YYD3_k127_798348_0 Zinc carboxypeptidase K14054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008914 549.0
YYD3_k127_820229_0 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004059 252.0
YYD3_k127_820229_1 CcmB protein K02194 - - 0.0000000000000000000000000000000000000000000000000000003601 202.0
YYD3_k127_820229_2 PFAM ABC transporter K01990,K02193,K09697 - 3.6.3.41,3.6.3.7 0.0000000000000000000000000000000000000000000000008434 182.0
YYD3_k127_820541_0 Peptidase family M3 K08602 - - 1.557e-220 704.0
YYD3_k127_820541_1 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 381.0
YYD3_k127_820541_2 LmbE family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001115 298.0
YYD3_k127_872620_0 Sodium:solute symporter family K14393 - - 4.727e-219 694.0
YYD3_k127_872620_1 Protein of unknown function, DUF485 - - - 0.00000000000000000000006937 102.0
YYD3_k127_884604_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 6.153e-229 720.0
YYD3_k127_890621_0 Acetyl xylan esterase (AXE1) - - - 3.028e-219 689.0
YYD3_k127_890621_1 Cupin domain - - - 0.000000000000000000000000000000000001277 140.0
YYD3_k127_893813_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 2.393e-207 661.0
YYD3_k127_893813_1 PhoH-like protein K06217 - - 0.000000000000000000000000000000001381 134.0
YYD3_k127_896338_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 526.0
YYD3_k127_896338_1 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008148 320.0
YYD3_k127_896338_2 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003161 279.0
YYD3_k127_910421_0 proline dipeptidase activity - - - 4.649e-195 617.0
YYD3_k127_910421_1 PFAM Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000007118 246.0
YYD3_k127_910421_2 DinB family - - - 0.000000006317 64.0
YYD3_k127_952075_0 with chaperone activity ATP-binding K03696 - - 2.167e-309 968.0
YYD3_k127_952075_1 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 431.0
YYD3_k127_952075_2 MacB-like periplasmic core domain K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 327.0
YYD3_k127_952075_3 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000357 266.0
YYD3_k127_952075_4 UvrB/uvrC motif K19411 - - 0.000000000000000000000000000000000000115 147.0
YYD3_k127_952075_5 Surface antigen K07277 - - 0.00000000000000000000000000000000004172 147.0
YYD3_k127_959597_0 Sodium:solute symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 571.0
YYD3_k127_959994_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000007792 129.0
YYD3_k127_959994_1 phosphorelay signal transduction system - - - 0.0000000000000000000000000005277 117.0
YYD3_k127_959994_2 Gram-negative bacterial TonB protein C-terminal - - - 0.000001079 55.0
YYD3_k127_959994_3 Pfam:N_methyl_2 K10924 - - 0.0000365 55.0
YYD3_k127_973853_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 483.0
YYD3_k127_973853_1 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000001111 234.0
YYD3_k127_973853_2 Transcriptional regulator K07506 - - 0.00000000000000000000000000000000000000003132 162.0
YYD3_k127_973853_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000004681 82.0
YYD3_k127_985379_0 Periplasmic copper-binding protein (NosD) K07218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 387.0
YYD3_k127_985379_1 ATPase activity K01990,K19340 - - 0.00000000000000000000000000000000000000000000000000000000000006715 223.0
YYD3_k127_993846_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.0000000000000000000000000000000000000000000000000000000132 201.0
YYD3_k127_993846_1 Pkd domain containing protein - - - 0.0000000000000000000002746 109.0
YYD3_k127_994170_0 siderophore transport K02014 - - 1.961e-218 701.0
YYD3_k127_994170_1 Nicotinamide mononucleotide transporter K03811 - - 0.00000000000000000000000000000000000000000000000000000000009121 215.0
YYD3_k127_994170_2 Putative heavy-metal-binding - - - 0.0000000000000000000000000000000000000004888 151.0
YYD3_k127_994170_3 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000006165 136.0
YYD3_k127_994170_4 Peptidase dimerisation domain K12941 - - 0.0000000000000000001303 92.0