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Overview

ID MAG04658
Name YYD3_bin.8
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Bacteroidota
Class Bacteroidia
Order Chitinophagales
Family Saprospiraceae
Genus Opimibacter
Species
Assembly information
Completeness (%) 78.16
Contamination (%) 1.77
GC content (%) 45.0
N50 (bp) 4,828
Genome size (bp) 2,894,148

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2619

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_100684_0 PFAM Y_Y_Y domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 317.0
YYD3_k127_100684_1 Glycosyl hydrolases family 16 - - - 0.000000000000000001503 93.0
YYD3_k127_1019838_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 320.0
YYD3_k127_1019838_1 COGs COG3712 Fe2 -dicitrate sensor membrane component - - - 0.0000000000000000000000000000000000000000000000000000000001028 216.0
YYD3_k127_1019838_2 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000000000000000000000000000004391 225.0
YYD3_k127_1019838_3 - - - - 0.000000000000000000000000000000000004226 146.0
YYD3_k127_1019838_4 Sigma-70, region 4 - - - 0.000000000000000000000000000000007444 134.0
YYD3_k127_1019838_5 - - - - 0.000000000000000000000000002399 121.0
YYD3_k127_1019838_6 C-terminal domain of CHU protein family - - - 0.0009174 44.0
YYD3_k127_1027554_0 peptidase family M13 K01415,K07386 - 3.4.24.71 1.044e-200 644.0
YYD3_k127_1027554_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000829 332.0
YYD3_k127_1027554_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000003246 240.0
YYD3_k127_1027554_3 - - - - 0.0000000000000000000000000000009029 126.0
YYD3_k127_1027554_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000002404 72.0
YYD3_k127_1033515_0 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K01585 - 4.1.1.19 1.085e-215 678.0
YYD3_k127_1033515_1 Deoxyhypusine synthase K00809 - 2.5.1.46 1.954e-199 625.0
YYD3_k127_1033515_2 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 627.0
YYD3_k127_1033515_3 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005568 530.0
YYD3_k127_1033515_4 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 402.0
YYD3_k127_1033515_5 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000907 260.0
YYD3_k127_1033515_6 Glutamine amidotransferase, class I K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000002515 219.0
YYD3_k127_1033515_7 BlaR1 peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000000003096 224.0
YYD3_k127_1033515_8 Thiol peroxidase K03564 - 1.11.1.15 0.0000000000000000000000000000000000000001105 155.0
YYD3_k127_1033515_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000008308 82.0
YYD3_k127_1041961_0 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003743 393.0
YYD3_k127_1041961_1 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000136 286.0
YYD3_k127_1041961_2 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000006939 149.0
YYD3_k127_1041961_3 - - - - 0.0000000000000000000000000005464 121.0
YYD3_k127_1041961_4 regulation of circadian rhythm K06919 - - 0.0005735 53.0
YYD3_k127_1046360_0 metallocarboxypeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 418.0
YYD3_k127_1046360_1 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 375.0
YYD3_k127_1046360_2 ribonuclease BN K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009394 310.0
YYD3_k127_1046360_3 - - - - 0.00000000000000000000000000000000000000000000000000001847 193.0
YYD3_k127_1046360_4 Methyltransferase domain - - - 0.000000000000001561 82.0
YYD3_k127_1052773_0 arylsulfatase A K01130 - 3.1.6.1 1.179e-274 852.0
YYD3_k127_1052773_1 - - - - 0.000000000000000000000000000001079 128.0
YYD3_k127_1052773_2 Biogenesis protein - - - 0.0000000000000000000000002772 111.0
YYD3_k127_1052934_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001696 255.0
YYD3_k127_1052934_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000007949 206.0
YYD3_k127_1053430_0 Oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009635 508.0
YYD3_k127_1053430_1 flavoprotein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005226 416.0
YYD3_k127_1053430_2 VTC domain - - - 0.00000000000000000000007041 108.0
YYD3_k127_1054284_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 565.0
YYD3_k127_1054284_1 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 471.0
YYD3_k127_1054284_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 380.0
YYD3_k127_1054284_3 Belongs to the RimK family K05844 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016874,GO:0016879,GO:0016881,GO:0018169,GO:0018410,GO:0019538,GO:0031668,GO:0033554,GO:0036211,GO:0042802,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070739,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 304.0
YYD3_k127_1054284_4 Protein of unknown function (DUF1698) - - - 0.0000000000000000000000000000000000000000000000004826 184.0
YYD3_k127_1054284_5 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000002316 149.0
YYD3_k127_1054284_6 Glycosyl transferase family 2 - - - 0.0000000000000000000000006623 106.0
YYD3_k127_1054589_0 Cytochrome C assembly protein - - - 0.0 1195.0
YYD3_k127_1054589_1 TIGRFAM A G-specific adenine glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 291.0
YYD3_k127_1054589_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005003 244.0
YYD3_k127_1054589_3 - - - - 0.000000000000000001711 85.0
YYD3_k127_107416_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 387.0
YYD3_k127_1083194_0 Alpha amylase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 533.0
YYD3_k127_1083194_1 Oxidoreductase family, C-terminal alpha beta domain K13016 - 1.1.1.335 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 351.0
YYD3_k127_1083194_2 Belongs to the DegT DnrJ EryC1 family K02805,K18653 - 2.6.1.104,2.6.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000376 336.0
YYD3_k127_1083194_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000003726 129.0
YYD3_k127_1091670_0 Carbamoyl-phosphate synthase K01955 - 6.3.5.5 0.0 1569.0
YYD3_k127_1091670_1 Carboxypeptidase regulatory-like domain - - - 0.0 1125.0
YYD3_k127_1091670_10 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.00000000000000000000000000000000000001231 145.0
YYD3_k127_1091670_11 Protein of unknown function (DUF3299) K09950 - - 0.00000000000000000000000000000000000003266 149.0
YYD3_k127_1091670_12 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.00000000000000000002618 91.0
YYD3_k127_1091670_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 374.0
YYD3_k127_1091670_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 364.0
YYD3_k127_1091670_4 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 341.0
YYD3_k127_1091670_5 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006351 297.0
YYD3_k127_1091670_6 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000000000000000004308 205.0
YYD3_k127_1091670_7 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000003252 199.0
YYD3_k127_1091670_8 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001687 196.0
YYD3_k127_1091670_9 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000000000000005965 175.0
YYD3_k127_1103015_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 1.696e-302 942.0
YYD3_k127_1103015_1 ABC transporter K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 337.0
YYD3_k127_1103015_2 PFAM pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 321.0
YYD3_k127_1103015_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000001436 232.0
YYD3_k127_1103015_4 PFAM PfkB domain protein - - - 0.0000000000000000001435 93.0
YYD3_k127_1120659_0 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003921 274.0
YYD3_k127_1120659_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000002387 157.0
YYD3_k127_1120659_2 Protein of unknown function (DUF3455) - - - 0.0000000000000000000000000001866 122.0
YYD3_k127_1120659_3 PFAM Signal transduction histidine kinase, internal region - - - 0.000000000000000000831 90.0
YYD3_k127_1124199_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.684e-248 770.0
YYD3_k127_1124199_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 550.0
YYD3_k127_1124199_2 Protein of unknown function (DUF3347) - - - 0.00000000000000002596 81.0
YYD3_k127_1141810_0 Mur ligase middle domain K01924,K02558 - 6.3.2.45,6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003976 446.0
YYD3_k127_1141810_1 S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000005205 186.0
YYD3_k127_1147685_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 8.755e-230 716.0
YYD3_k127_1147685_1 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 1.134e-221 704.0
YYD3_k127_1147685_2 PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007508 516.0
YYD3_k127_1147685_3 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 511.0
YYD3_k127_1147685_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172 479.0
YYD3_k127_1147685_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009847 374.0
YYD3_k127_1147685_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000003884 257.0
YYD3_k127_1147685_7 peptide-methionine (R)-S-oxide reductase K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000008257 214.0
YYD3_k127_1147685_8 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000001137 167.0
YYD3_k127_1147685_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000002957 140.0
YYD3_k127_1148132_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639,K20967 - 4.1.99.22,4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007558 441.0
YYD3_k127_1148132_1 MoeA C-terminal region (domain IV) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 364.0
YYD3_k127_1148132_2 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001815 280.0
YYD3_k127_1151113_0 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 469.0
YYD3_k127_1151113_1 ribonucleoside-diphosphate reductase activity K00525,K21636 - 1.1.98.6,1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 444.0
YYD3_k127_1151113_2 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008298 330.0
YYD3_k127_1151801_0 Outer membrane protein assembly complex, YaeT protein K07277 - - 1.232e-294 927.0
YYD3_k127_1151801_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 389.0
YYD3_k127_1151801_2 Protein of unknown function (DUF3089) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 332.0
YYD3_k127_1151801_3 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000008403 228.0
YYD3_k127_1160667_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.847e-255 794.0
YYD3_k127_1160667_1 2-methylthioadenine synthetase K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 572.0
YYD3_k127_1160667_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 515.0
YYD3_k127_1160667_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 311.0
YYD3_k127_1160667_4 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000000000000000000000000000000000000000000000008238 233.0
YYD3_k127_1160667_5 Uroporphyrin-iii c tetrapyrrole (Corrin porphyrin) methyltransferase K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000006721 218.0
YYD3_k127_1160667_6 PFAM Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000001094 171.0
YYD3_k127_1160667_7 ATP synthase K02114 - - 0.0000000000000000002417 89.0
YYD3_k127_1160667_8 Lysine exporter protein (Lyse ygga) - - - 0.000000000000003484 81.0
YYD3_k127_1170313_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 3.896e-217 694.0
YYD3_k127_1170313_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 353.0
YYD3_k127_1170313_2 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.00000000000000000000000000001558 122.0
YYD3_k127_1170313_3 Cytochrome c - - - 0.000000000000000000843 90.0
YYD3_k127_1176076_0 PFAM Dynamin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 555.0
YYD3_k127_1176076_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 497.0
YYD3_k127_1176076_2 phosphoesterase RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 350.0
YYD3_k127_1176076_3 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 305.0
YYD3_k127_1176076_4 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003648 283.0
YYD3_k127_1176076_5 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000001994 233.0
YYD3_k127_1176076_6 PFAM FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03767,K03772 - 5.2.1.8 0.000000000000000000000000000000000000001345 158.0
YYD3_k127_1176076_7 WbqC-like protein family - - - 0.000000000000000000000000469 113.0
YYD3_k127_1176076_8 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000001919 74.0
YYD3_k127_1179226_0 Glutamate formimidoyltransferase K00603,K13990 - 2.1.2.5,4.3.1.4 1.38e-220 697.0
YYD3_k127_1179226_1 Glycogen debranching enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 338.0
YYD3_k127_1179226_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 309.0
YYD3_k127_1179226_3 peptidase - - - 0.00000000000000003451 88.0
YYD3_k127_1179226_4 isoleucine patch - - - 0.000000000001151 68.0
YYD3_k127_1179226_5 Putative beta-lactamase-inhibitor-like, PepSY-like - - - 0.0006044 48.0
YYD3_k127_1189356_0 COG1228 Imidazolonepropionase and related K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006013 492.0
YYD3_k127_1189356_1 SPTR CHU large protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 476.0
YYD3_k127_1200079_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 1.667e-248 786.0
YYD3_k127_1204022_0 SMART Metal-dependent phosphohydrolase, HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 315.0
YYD3_k127_1204022_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001484 284.0
YYD3_k127_1204022_2 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000002059 195.0
YYD3_k127_1204346_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 393.0
YYD3_k127_1204346_1 GIY-YIG catalytic domain K07461 - - 0.0000000000000000000000000000000000002818 143.0
YYD3_k127_1204346_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000008449 103.0
YYD3_k127_1204346_3 Lipopolysaccharide-assembly, LptC-related - - - 0.000000008949 61.0
YYD3_k127_1204346_4 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0001147 45.0
YYD3_k127_1211789_0 SprB repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 452.0
YYD3_k127_1211789_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006889 267.0
YYD3_k127_1211789_2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001886 233.0
YYD3_k127_1211789_3 protein related to plant photosystem II stability assembly factor - - - 0.000005264 58.0
YYD3_k127_1220031_0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K00346 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005288 475.0
YYD3_k127_1220031_1 NQR2, RnfD, RnfE family K00347 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 465.0
YYD3_k127_1220031_2 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005718 282.0
YYD3_k127_1220031_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000412 218.0
YYD3_k127_1220031_4 PFAM Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000007834 161.0
YYD3_k127_1220031_5 RF-1 domain K15034 - - 0.000000000000000000000000004529 115.0
YYD3_k127_1220031_6 chain release factor K15034 - - 0.000000000002318 72.0
YYD3_k127_1220031_7 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.00000748 52.0
YYD3_k127_1223597_0 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 540.0
YYD3_k127_1223597_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 533.0
YYD3_k127_1223597_2 PFAM peptidase M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003977 416.0
YYD3_k127_1223597_3 - - - - 0.000000000000000000000115 103.0
YYD3_k127_1223597_4 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.000007653 50.0
YYD3_k127_1241684_0 PFAM Cytochrome c assembly protein K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 589.0
YYD3_k127_1241684_1 ABC transporter, ATP-binding protein K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001075 245.0
YYD3_k127_1241684_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000003628 133.0
YYD3_k127_1269606_0 oxidoreductase activity - - - 0.0000009461 61.0
YYD3_k127_1275521_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.407e-292 902.0
YYD3_k127_1275521_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 351.0
YYD3_k127_1275521_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000004885 65.0
YYD3_k127_1278273_0 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007187 440.0
YYD3_k127_1278273_1 Peptidase family C25 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 421.0
YYD3_k127_1278273_2 AMP-binding enzyme C-terminal domain K00666 - - 0.00000000621 56.0
YYD3_k127_1298594_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 508.0
YYD3_k127_1298594_1 Ferredoxin--NADP reductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 466.0
YYD3_k127_1298594_2 Pfam Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000105 145.0
YYD3_k127_1298594_3 Domain of unknown function (DUF4252) - - - 0.0001475 44.0
YYD3_k127_1315757_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 409.0
YYD3_k127_1315757_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005256 275.0
YYD3_k127_1315757_2 TPR repeat - - - 0.0000000001491 69.0
YYD3_k127_1333046_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K00615 - 2.2.1.1 1.248e-194 620.0
YYD3_k127_1333046_1 PFAM Glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 337.0
YYD3_k127_1333046_2 arsenical-resistance protein K03325 - - 0.0000000000000003869 78.0
YYD3_k127_1359957_0 Cellulase N-terminal ig-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 426.0
YYD3_k127_1359957_1 transcriptional regulator - - - 0.00000000000000000000000000000000000000001503 157.0
YYD3_k127_1359957_2 nitric oxide reductase K04561 - 1.7.2.5 0.000000000000000000000000000000000000005848 148.0
YYD3_k127_136290_0 PFAM Cytochrome c assembly protein K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009634 369.0
YYD3_k127_136290_1 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 347.0
YYD3_k127_136290_2 PFAM Acyl-protein synthetase, LuxE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004578 289.0
YYD3_k127_136290_3 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000198 254.0
YYD3_k127_136290_4 PFAM Cytochrome c-type biogenesis protein CcmB K02194 - - 0.00000000000000000000000000000000000007568 151.0
YYD3_k127_1363448_0 Cell shape determining protein MreB Mrl K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 387.0
YYD3_k127_1363448_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001 379.0
YYD3_k127_1363448_2 Peptidase M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 296.0
YYD3_k127_1388587_1 regulator of chromosome condensation, RCC1 - - - 0.0000000000004651 76.0
YYD3_k127_1402686_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1076.0
YYD3_k127_1402686_1 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1028.0
YYD3_k127_1402686_2 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 588.0
YYD3_k127_1402686_3 chaperone-mediated protein folding K20543 - - 0.0000000000000000000000000000000000000000000000000000000003205 214.0
YYD3_k127_1402686_4 TonB family domain protein - - - 0.000000000000000000000000000000000000000000000000000002705 200.0
YYD3_k127_1402686_5 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000001782 192.0
YYD3_k127_1402686_6 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000004615 180.0
YYD3_k127_1402686_7 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.000002734 59.0
YYD3_k127_1402686_8 chaperone-mediated protein folding K08309 - - 0.00003865 49.0
YYD3_k127_1435135_0 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006559 592.0
YYD3_k127_1435135_1 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 453.0
YYD3_k127_1435135_2 heat shock protein binding - - - 0.00001376 51.0
YYD3_k127_1448977_0 Bestrophin, RFP-TM, chloride channel K08994 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004704 558.0
YYD3_k127_1448977_1 Domain of unknown function (DUF4111) - - - 0.0000000000000000000000000004546 124.0
YYD3_k127_1448977_2 - - - - 0.0000000000000000001776 91.0
YYD3_k127_1448999_0 - - - - 0.000000000000000000000000000000000000000001366 156.0
YYD3_k127_1448999_2 - - - - 0.00000000000000000000006714 99.0
YYD3_k127_1448999_3 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000001309 84.0
YYD3_k127_1448999_4 COG NOG15344 non supervised orthologous group - - - 0.0000000000000003292 78.0
YYD3_k127_1448999_6 COG NOG14600 non supervised orthologous group - - - 0.0000695 46.0
YYD3_k127_1459996_0 Peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 476.0
YYD3_k127_1459996_1 Belongs to the DegT DnrJ EryC1 family K20429 - 2.6.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 387.0
YYD3_k127_1459996_2 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000001215 200.0
YYD3_k127_1459996_3 tail collar domain protein - - - 0.00000000000000000000000000000000000000000001594 171.0
YYD3_k127_1459996_4 4-alpha-L-fucosyltransferase glycosyl transferase group 56 - - - 0.000000000000000000001433 108.0
YYD3_k127_1459996_5 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000003095 73.0
YYD3_k127_1459996_6 domain, Protein - - - 0.00000000005621 65.0
YYD3_k127_1485721_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2157.0
YYD3_k127_1485721_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1051.0
YYD3_k127_1485721_10 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000000000005462 73.0
YYD3_k127_1485721_11 Lipid-binding putative hydrolase - - - 0.0000000000005359 77.0
YYD3_k127_1485721_13 recombinase activity - - - 0.0006317 43.0
YYD3_k127_1485721_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 2.9e-218 681.0
YYD3_k127_1485721_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007336 338.0
YYD3_k127_1485721_4 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007299 301.0
YYD3_k127_1485721_5 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006617 283.0
YYD3_k127_1485721_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000005089 233.0
YYD3_k127_1485721_7 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000000000007899 197.0
YYD3_k127_1485721_8 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.000000000000000000000000000000000000000000000008115 174.0
YYD3_k127_1485721_9 PFAM Sigma 54 modulation protein S30EA ribosomal protein K05808 - - 0.000000000000000000000000000002824 123.0
YYD3_k127_1491195_0 Doxx family - - - 0.000000000001784 78.0
YYD3_k127_1504134_0 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 310.0
YYD3_k127_1504134_1 Protein of unknown function, DUF481 - - - 0.0000000000000000000000000000001522 136.0
YYD3_k127_1504134_2 PFAM Tetratricopeptide - - - 0.0000000000000000000000000001981 121.0
YYD3_k127_151207_0 C-terminal domain of CHU protein family - - - 1.647e-243 776.0
YYD3_k127_1521226_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009448 589.0
YYD3_k127_1522832_0 COG0659 Sulfate permease and related K03321 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 549.0
YYD3_k127_1522832_1 cellulose binding - - - 0.00000000000000000000000000000000000763 155.0
YYD3_k127_1528526_0 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000002519 220.0
YYD3_k127_1528526_1 IMG reference gene - - - 0.0000000000000000000000007958 122.0
YYD3_k127_1528526_2 Transcriptional regulator - - - 0.00000196 59.0
YYD3_k127_1528857_0 phosphorylase K00691 - 2.4.1.8 4.799e-231 729.0
YYD3_k127_1528857_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000006466 208.0
YYD3_k127_1528857_2 histidine kinase dimerisation and phosphoacceptor region - - - 0.0000000000000000000000000000000000000000000000000000001376 218.0
YYD3_k127_1547279_0 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000009918 256.0
YYD3_k127_1547279_1 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.000000000000000000000000000000000000000000000000000000003387 205.0
YYD3_k127_1547279_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000001727 187.0
YYD3_k127_1547279_3 IMG reference gene - - - 0.0000000000000000000000000000000000000000003083 181.0
YYD3_k127_1552403_0 Thioredoxin reductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 492.0
YYD3_k127_1552403_1 Fructose-bisphosphate aldolase K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 478.0
YYD3_k127_1552403_2 Subtilase family K08651 - 3.4.21.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 400.0
YYD3_k127_1552403_3 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - 0.0000000000000000000000000000000000000000000000000000000000007951 215.0
YYD3_k127_1552403_4 Shikimate kinase K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000000000004189 134.0
YYD3_k127_1552403_5 Fructose-bisphosphate aldolase K01624 - 4.1.2.13 0.00000000000000000000000000000002161 126.0
YYD3_k127_1552403_6 InterPro IPR011467 - - - 0.0000000000000000000000001574 111.0
YYD3_k127_1552403_7 Preprotein translocase subunit K03210 - - 0.00000000000000000005605 93.0
YYD3_k127_1572568_0 SprB repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 468.0
YYD3_k127_1572568_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 297.0
YYD3_k127_1572568_2 COGs COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000005146 217.0
YYD3_k127_1572568_3 Reeler domain - - - 0.0000000000000007164 87.0
YYD3_k127_1581053_0 Conserved repeat domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 517.0
YYD3_k127_1589696_0 DNA photolyase K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006241 369.0
YYD3_k127_1589696_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 319.0
YYD3_k127_1589696_2 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006035 263.0
YYD3_k127_1589696_3 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000008749 224.0
YYD3_k127_1589696_4 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000001433 205.0
YYD3_k127_1589696_5 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000414 184.0
YYD3_k127_1589696_6 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000738 160.0
YYD3_k127_1589696_7 Cytochrome C oxidase, cbb3-type, subunit III K00368,K00405 - 1.7.2.1 0.00000000000000000008979 93.0
YYD3_k127_1589696_8 - - - - 0.000000002195 64.0
YYD3_k127_1591761_0 Molybdopterin oxidoreductase Fe4S4 domain K00367 - 1.7.7.2 4.88e-260 811.0
YYD3_k127_1615421_0 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 399.0
YYD3_k127_1615421_1 Protein of unknown function (DUF1211) - - - 0.0000000000000000000000002018 114.0
YYD3_k127_1625767_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 473.0
YYD3_k127_1625767_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 371.0
YYD3_k127_1625767_2 ABC-2 type transporter K01992 - - 0.0004444 48.0
YYD3_k127_1643658_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 5.14e-322 1010.0
YYD3_k127_1643658_1 PFAM glycoside hydrolase family 3 - - - 3.667e-289 917.0
YYD3_k127_1643658_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 531.0
YYD3_k127_1643658_3 D-arabinono-1,4-lactone oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 493.0
YYD3_k127_1643658_4 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.000000000000000000000000000000000000000000000002041 180.0
YYD3_k127_1643658_5 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000001122 177.0
YYD3_k127_1643658_6 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.000408 43.0
YYD3_k127_1646060_0 amp-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000957 391.0
YYD3_k127_1646060_1 PFAM SPFH domain Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006777 377.0
YYD3_k127_1646060_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000001478 219.0
YYD3_k127_1646060_3 Histidine kinase - - - 0.000000000005866 69.0
YYD3_k127_1658977_0 PFAM Copper binding proteins, plastocyanin azurin family - - - 1.151e-250 782.0
YYD3_k127_1667450_0 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 614.0
YYD3_k127_1667450_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007496 486.0
YYD3_k127_1667450_2 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 441.0
YYD3_k127_1667450_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000003151 238.0
YYD3_k127_1667450_4 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000002994 195.0
YYD3_k127_1667450_5 PFAM Glycoside hydrolase, family 20, catalytic core K12373 - 3.2.1.52 0.000000000000000000000000000000000000000000000006067 173.0
YYD3_k127_1667450_6 Sugar nucleotidyl transferase - - - 0.000000000000162 71.0
YYD3_k127_1672914_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 335.0
YYD3_k127_1672914_1 Protein of unknown function (DUF4197) - - - 0.000000000000000000000000000000000000000000000000000000000000000000005978 242.0
YYD3_k127_1672914_2 spore germination - - - 0.000000000000000000000000000000000000008018 150.0
YYD3_k127_1672914_3 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.000000000000000000000000000000000001048 143.0
YYD3_k127_1679005_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 6.534e-240 759.0
YYD3_k127_1679005_1 PLD-like domain - - - 0.00000000000000000000000005507 109.0
YYD3_k127_1680359_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 5.79e-240 754.0
YYD3_k127_1680359_1 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 427.0
YYD3_k127_1680359_2 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005262 278.0
YYD3_k127_1680359_3 photosynthesis - - - 0.00000000000000000000000000000000000000000000000000002288 197.0
YYD3_k127_1680359_4 endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000008483 166.0
YYD3_k127_1680359_5 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000002502 88.0
YYD3_k127_1680359_6 Uncharacterized ACR, COG1399 - - - 0.0000000000000009577 84.0
YYD3_k127_1689162_0 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840 - 5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008808 462.0
YYD3_k127_1689162_1 PFAM aminotransferase class V K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 367.0
YYD3_k127_1758327_0 TIGRFAM ComEC Rec2-related protein K02238 - - 0.0000000000000000000000000000000000000004157 170.0
YYD3_k127_1783717_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 594.0
YYD3_k127_179808_0 Y_Y_Y domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001443 230.0
YYD3_k127_179808_1 - - - - 0.0000000000000000000000000001222 121.0
YYD3_k127_179808_2 Psort location Cytoplasmic, score 9.97 - - - 0.00000000001024 75.0
YYD3_k127_179808_3 Transposase IS200 like - - - 0.0002886 51.0
YYD3_k127_1798430_0 PA14 K08738 - - 2.514e-237 742.0
YYD3_k127_1798430_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009785 595.0
YYD3_k127_1798430_2 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 409.0
YYD3_k127_1798430_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 361.0
YYD3_k127_1798430_4 PAP2 superfamily - - - 0.00003657 46.0
YYD3_k127_1808876_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1049.0
YYD3_k127_1808876_1 AcrB/AcrD/AcrF family - - - 3.669e-233 726.0
YYD3_k127_1808876_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 303.0
YYD3_k127_1808876_3 mercury ion transmembrane transporter activity - - - 0.0000000000000000000000000006112 116.0
YYD3_k127_1810418_0 TonB-dependent Receptor Plug Domain - - - 5.554e-237 752.0
YYD3_k127_1810418_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005683 307.0
YYD3_k127_1814493_0 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 466.0
YYD3_k127_1814493_1 Histidine phosphatase superfamily (branch 1) - - - 0.0000000000001883 74.0
YYD3_k127_1816720_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 434.0
YYD3_k127_1816720_1 Succinylglutamate desuccinylase / Aspartoacylase family K05526 - 3.5.1.96 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000116 291.0
YYD3_k127_1816720_10 COG3209 Rhs family protein K01337 - 3.4.21.50 0.00000000000000001085 99.0
YYD3_k127_1816720_11 Transmembrane family 220, helix - - - 0.000000000007233 68.0
YYD3_k127_1816720_2 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000241 282.0
YYD3_k127_1816720_3 TIGRFAM Por secretion system C-terminal sorting domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007176 275.0
YYD3_k127_1816720_4 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000005794 249.0
YYD3_k127_1816720_5 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000005152 222.0
YYD3_k127_1816720_6 translation initiation factor activity K06996 - - 0.000000000000000000000000000000000000000001736 158.0
YYD3_k127_1816720_7 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000002504 137.0
YYD3_k127_1816720_8 regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000574 136.0
YYD3_k127_1816720_9 COGs COG2852 conserved - - - 0.00000000000000000000000007406 111.0
YYD3_k127_1825732_0 IMG reference gene - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004147 332.0
YYD3_k127_1825732_1 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000203 284.0
YYD3_k127_1825732_2 Caulimovirus viroplasmin K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000003566 243.0
YYD3_k127_1825732_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000002834 237.0
YYD3_k127_1825732_4 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000004768 121.0
YYD3_k127_1825732_5 Recombinase - - - 0.0000568 48.0
YYD3_k127_183106_0 chlorophyll binding K03640 - - 8.66e-247 817.0
YYD3_k127_183106_1 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000002877 151.0
YYD3_k127_183106_2 Phage derived protein Gp49-like (DUF891) - - - 0.000000000000000000000000000000000001192 141.0
YYD3_k127_183106_3 Outer membrane protein beta-barrel family - - - 0.00000000000000004444 89.0
YYD3_k127_183106_4 ABC transporter K01990 - - 0.000000000002702 75.0
YYD3_k127_1857168_0 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 480.0
YYD3_k127_1857168_1 Glutathione synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 472.0
YYD3_k127_1857168_10 Protein of unknown function (Porph_ging) - - - 0.0000000000000000000000000000000000000007582 158.0
YYD3_k127_1857168_11 TM2 domain - - - 0.00000000000000000000000000000000003622 151.0
YYD3_k127_1857168_12 Glycogen recognition site of AMP-activated protein kinase - - - 0.000000000000000000000000000000003239 131.0
YYD3_k127_1857168_2 Outer membrane protein beta-barrel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 441.0
YYD3_k127_1857168_3 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 422.0
YYD3_k127_1857168_4 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 411.0
YYD3_k127_1857168_5 esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 295.0
YYD3_k127_1857168_6 GMP synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005932 264.0
YYD3_k127_1857168_7 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000006135 260.0
YYD3_k127_1857168_8 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000131 243.0
YYD3_k127_1857168_9 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000002408 182.0
YYD3_k127_1857529_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007467 533.0
YYD3_k127_1857529_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000009428 112.0
YYD3_k127_1857529_2 Glycosyl transferases group 1 - - - 0.00000000000002438 74.0
YYD3_k127_1863283_0 ribonuclease, Rne Rng family K08301 - - 2.429e-226 711.0
YYD3_k127_1863283_1 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001518 257.0
YYD3_k127_1863283_2 glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003478 263.0
YYD3_k127_1863283_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000006539 244.0
YYD3_k127_1863283_4 Squalene--hopene cyclase - - - 0.000000000000000000000000000000000000000004182 160.0
YYD3_k127_1863283_5 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000226 141.0
YYD3_k127_1863283_6 Tetratricopeptide repeat - - - 0.000000000000000000001048 98.0
YYD3_k127_1863283_7 - - - - 0.00000008438 53.0
YYD3_k127_1870675_0 Sortilin, neurotensin receptor 3, - - - 0.0 1219.0
YYD3_k127_1870675_1 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 480.0
YYD3_k127_1870675_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 385.0
YYD3_k127_1870675_3 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 292.0
YYD3_k127_1871643_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 572.0
YYD3_k127_1871643_1 thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004466 277.0
YYD3_k127_1871643_2 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000006569 196.0
YYD3_k127_1871643_3 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000002335 83.0
YYD3_k127_1884177_0 RQC K03654 - 3.6.4.12 9.392e-203 653.0
YYD3_k127_1884177_1 Protein of unknown function, DUF255 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000278 250.0
YYD3_k127_1886947_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 419.0
YYD3_k127_1886947_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K07216,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000005335 99.0
YYD3_k127_1886947_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000002995 76.0
YYD3_k127_1887085_0 TIGRFAM dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 563.0
YYD3_k127_1887085_1 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 498.0
YYD3_k127_1887085_2 Ergosterol biosynthesis ERG4/ERG24 family K00213,K00223 - 1.3.1.21,1.3.1.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 488.0
YYD3_k127_1887085_3 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 398.0
YYD3_k127_1887085_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000001089 222.0
YYD3_k127_1887085_5 short-chain dehydrogenase K07124 - - 0.0000000000000000000000000000000000000000000000000000000000002598 222.0
YYD3_k127_1887085_7 - - - - 0.000000007456 57.0
YYD3_k127_1896644_0 Aromatic amino acid lyase K01745,K10774 - 4.3.1.23,4.3.1.3 1.279e-227 715.0
YYD3_k127_1896644_1 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 8.745e-205 642.0
YYD3_k127_1896644_2 AMP-binding enzyme K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 551.0
YYD3_k127_1896644_3 Bacterial lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 390.0
YYD3_k127_1896644_4 KR domain K00023,K00059 - 1.1.1.100,1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005749 352.0
YYD3_k127_1896644_5 dehydratase - - - 0.00000000000000000000000000000000001848 139.0
YYD3_k127_1896644_6 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000461 138.0
YYD3_k127_1896644_7 acyl carrier protein K02078 - - 0.000000000000000000000000000000005056 130.0
YYD3_k127_1896644_8 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.0000000000000000000000219 102.0
YYD3_k127_1899392_0 Cell shape determining protein MreB Mrl K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003422 395.0
YYD3_k127_1899392_1 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 315.0
YYD3_k127_1899392_2 shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000000000000000000000009811 201.0
YYD3_k127_1899392_3 rod shape-determining protein MreD - - - 0.00000000000000003032 88.0
YYD3_k127_1919931_0 COGs COG0737 5'-nucleotidase 2' 3'-cyclic phosphodiesterase and related esterase K01081,K11751 - 3.1.3.5,3.6.1.45 1.378e-272 847.0
YYD3_k127_1919931_1 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000307 133.0
YYD3_k127_1919931_2 outer membrane porin, OprD family - - - 0.000000000000001858 79.0
YYD3_k127_192677_0 Response regulator of the LytR AlgR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 286.0
YYD3_k127_192677_1 regulator of cell autolysis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002816 286.0
YYD3_k127_192677_2 TonB-dependent Receptor Plug K02014 - - 0.00000000000000000000000000000000000000522 151.0
YYD3_k127_192677_3 regulator of cell autolysis - - - 0.00000000000000000000000001631 112.0
YYD3_k127_192677_4 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.00000000000000000000002047 103.0
YYD3_k127_1927947_0 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007314 357.0
YYD3_k127_1927947_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000007882 183.0
YYD3_k127_1927947_2 Protein of unknown function (DUF3667) - - - 0.00000000000000000000000689 111.0
YYD3_k127_1934041_0 Fungalysin metallopeptidase (M36) - - - 1.026e-218 715.0
YYD3_k127_1934041_1 Fungalysin metallopeptidase (M36) - - - 0.0000000000009782 75.0
YYD3_k127_1936911_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 568.0
YYD3_k127_1936911_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000849 516.0
YYD3_k127_1936911_2 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009229 446.0
YYD3_k127_1936911_3 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000006799 237.0
YYD3_k127_1939598_0 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 483.0
YYD3_k127_1939598_1 LmbE family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005966 339.0
YYD3_k127_1939598_2 Sodium:solute symporter family - - - 0.0000000000000000000000000000000000000000000000000000000002284 205.0
YYD3_k127_1958288_0 TonB-linked outer membrane protein, SusC RagA family - - - 2.909e-306 962.0
YYD3_k127_1958288_1 Pfam:SusD K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 360.0
YYD3_k127_1963491_0 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 349.0
YYD3_k127_1963491_2 (ABC) transporter K06147 - - 0.000000000000000000209 100.0
YYD3_k127_1971122_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001267 291.0
YYD3_k127_1982557_0 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 494.0
YYD3_k127_1982557_1 TIGRFAM gliding motility-associated lipoprotein GldD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006695 276.0
YYD3_k127_1987558_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 460.0
YYD3_k127_1987558_1 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000009526 268.0
YYD3_k127_1987558_2 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000000000000000000000000000000136 222.0
YYD3_k127_1987558_3 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000006949 180.0
YYD3_k127_2085102_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 4.203e-214 672.0
YYD3_k127_2085102_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009272 609.0
YYD3_k127_2085102_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000000000000000000000000000007322 181.0
YYD3_k127_2085102_3 PFAM Uncharacterised protein family UPF0029, Impact, N-terminal - - - 0.000000000000000000000000000000000000000000003088 173.0
YYD3_k127_2085102_4 Domain of Unknown Function (DUF1599) - - - 0.000000000000000000000000000000000000004264 149.0
YYD3_k127_2085102_5 EamA-like transporter family - - - 0.0000000000000000000000000000000000006603 151.0
YYD3_k127_2099332_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 565.0
YYD3_k127_2099332_1 COGs COG2192 carbamoyl transferase NodU family K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 420.0
YYD3_k127_2099332_2 COGs COG0463 Glycosyltransferase involved in cell wall biogenesis K13002 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 320.0
YYD3_k127_2099332_3 COGs COG2192 carbamoyl transferase NodU family K00612 - - 0.00000000000000000000000000000000000000000004036 162.0
YYD3_k127_2099332_4 GDP-mannose 4,6 dehydratase K02377 - 1.1.1.271 0.000000000005994 69.0
YYD3_k127_2100217_0 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 1.459e-224 705.0
YYD3_k127_2100217_1 Oxygen tolerance - - - 0.0000000000000000000000000000000000000003392 167.0
YYD3_k127_2100217_2 - - - - 0.0000000000000005152 85.0
YYD3_k127_2100217_3 TPR repeat-containing protein - - - 0.00000000000003175 86.0
YYD3_k127_2100217_5 Ion channel K10716 - - 0.0002798 43.0
YYD3_k127_2101499_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 2.304e-227 712.0
YYD3_k127_2101499_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002057 250.0
YYD3_k127_2101499_2 amp-binding enzyme - - - 0.000000000000000000000000000000000000000000000002021 177.0
YYD3_k127_2101499_3 amp-binding enzyme - - - 0.00000000000000000000000000000000007906 135.0
YYD3_k127_2103075_0 AsmA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001311 280.0
YYD3_k127_2103075_1 Pkd domain containing protein - - - 0.000000000000000000001394 96.0
YYD3_k127_2105080_0 PFAM Alpha amylase, catalytic K01176,K01208 GO:0000272,GO:0000287,GO:0001871,GO:0003674,GO:0003824,GO:0004553,GO:0004556,GO:0005488,GO:0005509,GO:0005575,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0016020,GO:0016052,GO:0016160,GO:0016787,GO:0016798,GO:0019867,GO:0030246,GO:0030247,GO:0043167,GO:0043169,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046872,GO:0071704,GO:1901575,GO:2001070 3.2.1.1,3.2.1.133,3.2.1.135,3.2.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 507.0
YYD3_k127_2105080_1 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 448.0
YYD3_k127_2105080_2 PFAM RES domain - - - 0.0000000000000000000000000000000000000000000958 164.0
YYD3_k127_2105080_3 Protein of unknown function (DUF2384) - - - 0.00000000000000000000000000000000000002561 147.0
YYD3_k127_2105080_4 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000001401 107.0
YYD3_k127_2105080_5 - - - - 0.000000000000000000357 100.0
YYD3_k127_2105796_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1373.0
YYD3_k127_2105796_1 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000001001 124.0
YYD3_k127_2132581_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 9.544e-296 925.0
YYD3_k127_2132581_1 Predicted membrane protein (DUF2157) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006098 263.0
YYD3_k127_2132581_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000008776 164.0
YYD3_k127_2145742_0 Sulfatase K01130 - 3.1.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 376.0
YYD3_k127_2145742_2 Glycine-zipper domain - - - 0.000000000000000000000000000000000001016 145.0
YYD3_k127_2159625_0 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 2.906e-243 755.0
YYD3_k127_2159625_1 Protein of unknown function (DUF3089) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 337.0
YYD3_k127_2159625_2 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005966 258.0
YYD3_k127_2159625_3 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.000000000000000000000000000000000000000000000006231 175.0
YYD3_k127_2175020_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 349.0
YYD3_k127_2195075_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 319.0
YYD3_k127_2195075_1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004012 278.0
YYD3_k127_2195075_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001345 294.0
YYD3_k127_2199084_0 Concanavalin A-like lectin/glucanases superfamily - - - 0.0 1473.0
YYD3_k127_2199084_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000407 305.0
YYD3_k127_2267829_0 Gliding motility-associated protein GldM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 422.0
YYD3_k127_2267829_1 TIGRFAM gliding motility associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 297.0
YYD3_k127_2267829_2 TIGRFAM gliding motility-associated protein GldL - - - 0.00000000000000000000000000000000000000000000000000002484 196.0
YYD3_k127_2267829_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000003119 78.0
YYD3_k127_2279000_0 Protein conserved in bacteria - - - 0.0000000000000002485 93.0
YYD3_k127_2310465_0 Metallo-peptidase family M12 - - - 1.973e-209 682.0
YYD3_k127_2310465_1 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006274 245.0
YYD3_k127_2310465_2 PFAM RNA polymerase sigma factor 70, region 4 type 2 K03088 - - 0.000000000000000000000000000000000000000000000000003798 187.0
YYD3_k127_2310465_3 Thermolysin metallopeptidase, catalytic domain - - - 0.00000000000000000000000000000000000000005029 168.0
YYD3_k127_2310465_4 redox protein regulator of disulfide bond formation K07397 - - 0.000000000000000000000000000000000375 136.0
YYD3_k127_2310465_5 - - - - 0.00000000000000001528 90.0
YYD3_k127_2310732_0 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 464.0
YYD3_k127_2319308_0 COGs COG4995 conserved - - - 3.228e-281 897.0
YYD3_k127_2319308_1 Metallo-peptidase family M12 - - - 1.159e-208 680.0
YYD3_k127_2319308_2 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.00000000000000000000000000000000004713 142.0
YYD3_k127_2319308_3 DinB superfamily - - - 0.000000000000000000000000000006384 121.0
YYD3_k127_2319308_4 Putative metal-binding motif - - - 0.000000000000000000000000001355 126.0
YYD3_k127_2319680_0 Cation efflux family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 298.0
YYD3_k127_2319680_1 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000000000000000006468 218.0
YYD3_k127_2319680_2 Lipocalin-like domain - - - 0.00000000000000006432 85.0
YYD3_k127_2335044_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1212.0
YYD3_k127_2335044_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 411.0
YYD3_k127_2335044_10 TIGRFAM cytochrome C family protein - - - 0.0000000003214 61.0
YYD3_k127_2335044_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000886 379.0
YYD3_k127_2335044_3 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 299.0
YYD3_k127_2335044_4 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000003147 241.0
YYD3_k127_2335044_5 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000003122 199.0
YYD3_k127_2335044_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000001815 164.0
YYD3_k127_2335044_7 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000001068 151.0
YYD3_k127_2335044_8 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000000000009551 126.0
YYD3_k127_2335044_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000001768 123.0
YYD3_k127_2341228_0 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 356.0
YYD3_k127_2341228_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003737 294.0
YYD3_k127_2341228_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000158 239.0
YYD3_k127_2341228_3 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000007842 225.0
YYD3_k127_2341228_4 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000000000000000000000000000000000000000000003127 216.0
YYD3_k127_2341228_5 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000000000000000000000000000000000000000004706 207.0
YYD3_k127_2341228_6 ABC-type phosphate transport system periplasmic K02040 - - 0.000000000000000000000000000000000000000000003549 176.0
YYD3_k127_2341228_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000004126 125.0
YYD3_k127_2343518_0 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 297.0
YYD3_k127_2343518_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000000000000000003307 167.0
YYD3_k127_2343518_2 Phosphate acyltransferases - - - 0.000000000000000000000000000000000003511 145.0
YYD3_k127_2343518_3 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000001019 98.0
YYD3_k127_2350151_0 Oxidoreductase K00184 - - 0.0 1139.0
YYD3_k127_2350151_1 PFAM Polysulphide reductase, NrfD K00185 - - 2.151e-257 799.0
YYD3_k127_2350151_2 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 567.0
YYD3_k127_2350151_3 Quinol cytochrome c oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009389 507.0
YYD3_k127_2350151_4 cytochrome C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004327 276.0
YYD3_k127_2350151_5 Quinol cytochrome c oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001715 250.0
YYD3_k127_2350151_6 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000001245 103.0
YYD3_k127_2350151_7 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000002197 68.0
YYD3_k127_2354839_0 TraB family K09973 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002581 258.0
YYD3_k127_2354839_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000543 164.0
YYD3_k127_2354839_2 - - - - 0.0000000000000000000000002247 111.0
YYD3_k127_2360444_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 559.0
YYD3_k127_2360444_1 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000197 353.0
YYD3_k127_236901_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 341.0
YYD3_k127_236901_1 COG2373 Large extracellular alpha-helical protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008512 269.0
YYD3_k127_236901_2 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000001928 177.0
YYD3_k127_236901_3 YjbR - - - 0.00000000000000000000000000000000000000001577 155.0
YYD3_k127_236901_4 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 0.00000000000000000000000000000000001027 143.0
YYD3_k127_236901_5 Sterol-binding domain protein - - - 0.00000000000000000000000002172 111.0
YYD3_k127_2399055_0 TonB-dependent receptor plug domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 379.0
YYD3_k127_2399055_1 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007526 314.0
YYD3_k127_2408110_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 489.0
YYD3_k127_2408110_1 Protein of unknown function (DUF3109) - - - 0.0000000000000000000000000000000000000000000000000000000000000166 221.0
YYD3_k127_2408110_2 Type III secretion system lipoprotein chaperone (YscW) K09914 - - 0.00000003278 62.0
YYD3_k127_241048_0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 428.0
YYD3_k127_241048_1 Phage integrase, N-terminal SAM-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 304.0
YYD3_k127_241238_0 Polysaccharide deacetylase K22278 - 3.5.1.104 0.0000000000000000000000000000000000000000000000000000000000000001758 226.0
YYD3_k127_241238_1 PFAM O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000003668 207.0
YYD3_k127_241238_2 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000000000000000000000000000009683 197.0
YYD3_k127_241238_4 dehydratase K02372 - 4.2.1.59 0.0000000000000000000006735 99.0
YYD3_k127_2416472_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 7.314e-225 716.0
YYD3_k127_2416472_1 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 601.0
YYD3_k127_2416472_2 PFAM Bacterial protein of K06915 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005419 524.0
YYD3_k127_2416472_3 NAD-dependent epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006037 396.0
YYD3_k127_2416472_4 HupE / UreJ protein - - - 0.000000000000000000000000000000000000000000000000000000002529 206.0
YYD3_k127_2416472_5 - - - - 0.0000000008365 66.0
YYD3_k127_2416472_6 FeoA domain K04758 - - 0.00007723 49.0
YYD3_k127_2432803_0 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000744 448.0
YYD3_k127_2432803_1 Binding-protein-dependent transport system inner membrane component K02050,K15577 - - 0.0000000000000000000000000000000000000000000000002923 182.0
YYD3_k127_2440330_0 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 507.0
YYD3_k127_2440330_1 PFAM Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 299.0
YYD3_k127_2440330_2 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.00000000000000000000000000000000008694 134.0
YYD3_k127_2505528_0 TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003263 293.0
YYD3_k127_2505528_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000754 189.0
YYD3_k127_2505528_2 Protein of unknown function, DUF393 - - - 0.00000000000000000000002754 103.0
YYD3_k127_2505528_3 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.000000002574 58.0
YYD3_k127_2511691_0 Outer membrane protein beta-barrel domain - - - 4.206e-267 839.0
YYD3_k127_2511691_1 PFAM Uncharacterised protein family UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003741 387.0
YYD3_k127_2511691_10 - - - - 0.00000000000000005068 83.0
YYD3_k127_2511691_11 YtxH-like protein - - - 0.0000000000000474 75.0
YYD3_k127_2511691_12 - - - - 0.0000000002361 63.0
YYD3_k127_2511691_13 Belongs to the UPF0337 (CsbD) family - - - 0.00000005178 57.0
YYD3_k127_2511691_14 AraC family transcriptional regulator - - - 0.00002703 46.0
YYD3_k127_2511691_2 guanyl-nucleotide exchange factor activity K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002891 326.0
YYD3_k127_2511691_3 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000002697 184.0
YYD3_k127_2511691_4 Cupin domain protein - - - 0.00000000000000000000000000000000000000000001492 164.0
YYD3_k127_2511691_5 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000002462 166.0
YYD3_k127_2511691_6 - - - - 0.000000000000000000000000000001273 126.0
YYD3_k127_2511691_7 - - - - 0.00000000000000000000000000001946 123.0
YYD3_k127_2511691_8 - - - - 0.0000000000000000000000001282 111.0
YYD3_k127_2511691_9 - - - - 0.00000000000000001934 87.0
YYD3_k127_2518723_0 photoreceptor activity K06370 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 351.0
YYD3_k127_2518723_1 Regulator - - - 0.0000000000000002594 81.0
YYD3_k127_2518723_2 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000005246 72.0
YYD3_k127_2518723_3 Subtilase family - - - 0.000008527 55.0
YYD3_k127_2520691_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K01769 - 4.6.1.1,4.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001524 283.0
YYD3_k127_2520691_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000005532 152.0
YYD3_k127_2520691_2 Cytochrome c - - - 0.00000000000000000000000000000003028 130.0
YYD3_k127_2523867_0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002652 241.0
YYD3_k127_2523867_1 Amidohydrolase K10220 - 4.2.1.83 0.000000000000000000000000000000000002042 147.0
YYD3_k127_2523867_2 Cupin domain - - - 0.0000000000000000001051 94.0
YYD3_k127_2523867_3 Histidine kinase - - - 0.000003752 49.0
YYD3_k127_2524025_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 7.71e-253 793.0
YYD3_k127_2524025_2 Metallo-beta-lactamase - - - 0.00000000003415 66.0
YYD3_k127_2524025_3 Metallo-beta-lactamase - - - 0.0004293 44.0
YYD3_k127_2550512_0 cytochrome c oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007631 571.0
YYD3_k127_2550512_1 PFAM Cytochrome c, class I K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001655 253.0
YYD3_k127_2550512_2 Belongs to the heme-copper respiratory oxidase family K15862 - 1.9.3.1 0.0000000000000000000000000000000000000000000001242 169.0
YYD3_k127_2550512_3 Cbb3-type cytochrome oxidase component FixQ - - - 0.000000008631 57.0
YYD3_k127_2567648_0 protein conserved in bacteria (DUF2329) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 534.0
YYD3_k127_2567648_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002754 251.0
YYD3_k127_2567648_3 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002899 247.0
YYD3_k127_2567648_4 - K07275 - - 0.00000000000000000000000000000000000000000000000000000000005421 210.0
YYD3_k127_2567648_5 - - - - 0.0000000000000000000000000000000005434 137.0
YYD3_k127_2567648_6 protein conserved in bacteria (DUF2329) - - - 0.000001312 55.0
YYD3_k127_2567648_7 Endoglucanase K01179 - 3.2.1.4 0.00002533 48.0
YYD3_k127_2569454_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 541.0
YYD3_k127_2569454_1 Thermophilic metalloprotease (M29) K19689 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 430.0
YYD3_k127_2569454_2 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 341.0
YYD3_k127_2569454_3 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000001211 163.0
YYD3_k127_257345_0 Belongs to the ABC transporter superfamily K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 412.0
YYD3_k127_257345_1 Aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000001647 217.0
YYD3_k127_257345_2 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000004605 198.0
YYD3_k127_2574743_0 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 475.0
YYD3_k127_2574743_1 Dahp synthetase i kdsa K04516 - 5.4.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 440.0
YYD3_k127_2574743_2 outer membrane chaperone Skp (OmpH) K06142 - - 0.00000000000000000000000000000000000000000000000000000008148 200.0
YYD3_k127_2574743_3 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000001597 126.0
YYD3_k127_2574743_4 Metallo-peptidase family M12 - - - 0.000001603 59.0
YYD3_k127_2579488_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.0 1022.0
YYD3_k127_2579488_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 526.0
YYD3_k127_2579488_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004914 273.0
YYD3_k127_2579488_3 cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000002782 209.0
YYD3_k127_2588817_0 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 529.0
YYD3_k127_2588817_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000001071 151.0
YYD3_k127_2588817_2 YjbR - - - 0.00000000000000000000000000000000001255 139.0
YYD3_k127_2588817_3 methyltransferase - - - 0.000000000000000000000000001168 122.0
YYD3_k127_2588817_4 Anti-sigma-K factor rskA - - - 0.00000000000000000000007211 109.0
YYD3_k127_2588817_5 - - - - 0.00000000000000000008144 92.0
YYD3_k127_259372_0 K+ potassium transporter K03549 - - 4.874e-253 787.0
YYD3_k127_259372_1 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 357.0
YYD3_k127_2599010_0 PFAM Scaffold protein Nfu NifU N terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 316.0
YYD3_k127_2599010_1 PFAM FAD dependent oxidoreductase K15736 - - 0.000000000000000000000000000000000000000000000000000000000000003519 220.0
YYD3_k127_2599010_2 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000002989 141.0
YYD3_k127_2599010_3 cell adhesion involved in biofilm formation - - - 0.000255 47.0
YYD3_k127_2602684_0 N-acetyl-alpha-D-glucosaminyl L-malate synthase K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007797 559.0
YYD3_k127_2602684_1 involved in cell wall biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 401.0
YYD3_k127_2602684_2 Fatty acid desaturase K00496 - 1.14.15.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 341.0
YYD3_k127_2602684_3 2Fe-2S iron-sulfur cluster binding domain K02613 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 321.0
YYD3_k127_2602684_4 MerR family K22491 - - 0.00000000000000000000000000000000000000000000009464 179.0
YYD3_k127_2602684_5 YceI-like domain - - - 0.0000000000000000000000000000000000000000000003024 175.0
YYD3_k127_2602684_6 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000006266 149.0
YYD3_k127_2602684_7 Participates in the control of copper homeostasis K06201 - - 0.0000000000006524 72.0
YYD3_k127_2607749_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 573.0
YYD3_k127_2607749_1 Rnf-Nqr subunit, membrane protein K00349 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 312.0
YYD3_k127_2607749_2 COG1055 Na H antiporter NhaD and related arsenite - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 308.0
YYD3_k127_2607749_3 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009457 306.0
YYD3_k127_2607749_4 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00350 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006695 276.0
YYD3_k127_2607749_5 signal transduction protein with CBS domains - - - 0.0000000000000000000000000000000000000000000000000002048 188.0
YYD3_k127_2607749_6 FMN_bind K00348 - 1.6.5.8 0.0000000000000000000000000000001882 126.0
YYD3_k127_2607749_7 - - - - 0.0000000003574 62.0
YYD3_k127_261248_0 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 331.0
YYD3_k127_261248_1 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000003753 159.0
YYD3_k127_261248_2 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000003704 134.0
YYD3_k127_2612945_0 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 589.0
YYD3_k127_2612945_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 418.0
YYD3_k127_2612945_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000000000000000000007977 176.0
YYD3_k127_2612945_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000008195 146.0
YYD3_k127_2612945_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000003218 84.0
YYD3_k127_2615751_0 DNA polymerase X family - - - 9.811e-217 687.0
YYD3_k127_2615751_1 Erythromycin esterase K06880 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008232 574.0
YYD3_k127_2615751_2 Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000003496 226.0
YYD3_k127_2615751_3 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000009341 223.0
YYD3_k127_2615751_4 - - - - 0.00000000000000000000000000000000003348 141.0
YYD3_k127_2621611_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1242.0
YYD3_k127_2621611_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007366 300.0
YYD3_k127_2621611_2 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009011 258.0
YYD3_k127_2621611_3 regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000000008617 199.0
YYD3_k127_2621611_4 Pkd domain containing protein - - - 0.00000000000000000000000006476 127.0
YYD3_k127_2621611_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000002792 85.0
YYD3_k127_2621611_6 Kazal type serine protease inhibitors - - - 0.0000000000000001959 81.0
YYD3_k127_2621611_7 - - - - 0.0002737 51.0
YYD3_k127_263026_0 LacY proton/sugar symporter K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007411 537.0
YYD3_k127_263026_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006802 266.0
YYD3_k127_263026_2 DinB superfamily - - - 0.000000000007728 70.0
YYD3_k127_263409_0 Putative serine dehydratase domain K20757 - 4.3.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007432 373.0
YYD3_k127_263409_1 Ryanodine receptor Ryr - - - 0.000000000000000000000000000000000000003768 166.0
YYD3_k127_263409_2 TIR domain K12132 - 2.7.11.1 0.000000000000000000000000000003127 139.0
YYD3_k127_263409_3 protein serine/threonine phosphatase activity K20074 - 3.1.3.16 0.0000000000000002776 93.0
YYD3_k127_2647357_0 Doxx family - - - 0.00000000000000008984 88.0
YYD3_k127_2647357_1 Belongs to the ompA family K03286 - - 0.00000000123 70.0
YYD3_k127_2647357_2 C-terminal domain of CHU protein family - - - 0.00007294 55.0
YYD3_k127_2651305_0 Belongs to the peptidase M16 family K07263 - - 1.433e-227 734.0
YYD3_k127_2651305_1 - - - - 0.000000000000000000000000000271 126.0
YYD3_k127_2651305_2 - - - - 0.0000000000000000000006381 103.0
YYD3_k127_2666349_0 amino acid peptide transporter K03305 - - 5.284e-207 654.0
YYD3_k127_2666349_1 POT family K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001261 276.0
YYD3_k127_2666661_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 428.0
YYD3_k127_2666661_1 Rhodanese Homology Domain K06917 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 314.0
YYD3_k127_2666661_2 Exonuclease - - - 0.000000000000000000000000000000000000000000000009319 177.0
YYD3_k127_2666661_3 pilus organization - - - 0.000000000237 66.0
YYD3_k127_2666661_4 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.0000001576 56.0
YYD3_k127_2692889_0 COG0188 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) A subunit K02621 - - 1.608e-199 636.0
YYD3_k127_2692889_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 446.0
YYD3_k127_2692889_2 outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000001752 216.0
YYD3_k127_2692889_3 protein conserved in bacteria K09931 - - 0.0000000000000000000000000000000000000000001424 166.0
YYD3_k127_2692889_4 Domain of unknown function (DUF5103) - - - 0.000000000000000000000000005975 117.0
YYD3_k127_2692889_5 - - - - 0.00000000000000000002017 96.0
YYD3_k127_2692889_6 PFAM Anti-sigma-K factor RskA - - - 0.0000003382 61.0
YYD3_k127_2693990_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000004376 220.0
YYD3_k127_2693990_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000001477 196.0
YYD3_k127_2695722_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007087 348.0
YYD3_k127_2695722_1 ABC-2 family transporter protein K19341 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007532 319.0
YYD3_k127_2695722_2 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. - - - 0.000000000000000000000000000000000000000000000000000000000007623 212.0
YYD3_k127_2695722_3 cyclic nucleotide-binding - - - 0.000000000000000000000000000000000000000000000000000002732 197.0
YYD3_k127_2695722_4 COG2346, Truncated hemoglobins K06886 - - 0.000000000000000000000000000006051 123.0
YYD3_k127_2695722_5 Two component regulator three Y - - - 0.00000001055 57.0
YYD3_k127_2695722_6 Outer membrane protein beta-barrel domain - - - 0.000001122 58.0
YYD3_k127_2696497_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 8.113e-316 984.0
YYD3_k127_2696497_1 PFAM MazG nucleotide pyrophosphohydrolase K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000926 362.0
YYD3_k127_2696497_2 GTP cyclohydrolase II - - - 0.0000000000000000000000000000000000000000000000000000000000001406 218.0
YYD3_k127_2696497_3 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000003062 124.0
YYD3_k127_2696497_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000001119 80.0
YYD3_k127_2696534_0 Prolyl oligopeptidase family - - - 2.568e-272 855.0
YYD3_k127_2696534_1 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000001526 216.0
YYD3_k127_2696534_2 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000001873 208.0
YYD3_k127_2696534_3 - - - - 0.00000000007725 64.0
YYD3_k127_2705147_0 signal peptide peptidase SppA, 67K type K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000534 234.0
YYD3_k127_2705147_1 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000007301 201.0
YYD3_k127_2705147_2 YceI-like domain - - - 0.00000000000000000000000000000000000000000000000000000702 196.0
YYD3_k127_2706248_0 Glycosyl hydrolase family 46 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005013 271.0
YYD3_k127_2706248_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000000000000000000000000000000000003451 209.0
YYD3_k127_2706248_2 - - - - 0.00000000000000000000000000000000000000000000000000000006032 212.0
YYD3_k127_2706248_3 Belongs to the peptidase S8 family - - - 0.0000000002719 68.0
YYD3_k127_2717497_0 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 353.0
YYD3_k127_2717497_1 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008843 320.0
YYD3_k127_2717497_2 Surface antigen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003502 280.0
YYD3_k127_2717497_3 Iron dicitrate transport regulator FecR K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000002729 213.0
YYD3_k127_2717497_4 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270,K21749 - 2.7.7.43,2.7.7.92,3.1.3.45 0.0000000000000000000000000000000000000000000001081 173.0
YYD3_k127_2717497_5 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000148 179.0
YYD3_k127_2717497_6 glycerol acyltransferase - - - 0.00000000000000000000000000000000000000000004717 169.0
YYD3_k127_2717497_7 Acyl-transferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000001674 151.0
YYD3_k127_2717497_8 glycerol acyltransferase - - - 0.000000000000000000000003809 106.0
YYD3_k127_2717497_9 FtsZ-dependent cytokinesis - - - 0.00000000000000000000004777 111.0
YYD3_k127_2724917_0 ligase activity - - - 5.495e-201 636.0
YYD3_k127_2724917_1 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000002512 197.0
YYD3_k127_2724917_2 Prokaryotic glutathione synthetase, ATP-grasp domain K01920 - 6.3.2.3 0.00000000000006072 76.0
YYD3_k127_2730771_0 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005408 398.0
YYD3_k127_2730771_1 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001165 250.0
YYD3_k127_2730771_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000007183 175.0
YYD3_k127_2730771_3 - - - - 0.0000000007049 66.0
YYD3_k127_2739207_0 Outer membrane receptor for Fe3 -dicitrate K16091 - - 2.726e-207 666.0
YYD3_k127_2739207_1 Protein of unknown function (DUF3788) - - - 0.00000000000000000000000000000000000000000001813 166.0
YYD3_k127_2745130_0 Adenine deaminase C-terminal domain K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 593.0
YYD3_k127_2745130_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000003007 232.0
YYD3_k127_2745130_2 Protein of unknown function (DUF3467) - - - 0.000000000000000000000000000000002434 129.0
YYD3_k127_2745130_3 PFAM PspC domain - - - 0.000000000000004509 77.0
YYD3_k127_2748171_0 NhaP-type Na H and K H K03316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006354 407.0
YYD3_k127_2748171_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 419.0
YYD3_k127_2748171_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000001696 222.0
YYD3_k127_2748171_3 SnoaL-like domain - - - 0.000000000000000000000000000000000000002592 150.0
YYD3_k127_2748171_4 candidate b-glycosidase, glycoside hydrolase family 8 protein - - - 0.000000000000000000000000007224 120.0
YYD3_k127_2750430_0 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008925 482.0
YYD3_k127_2750430_1 Gliding motility protein, GldB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004443 285.0
YYD3_k127_2750430_2 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000007219 141.0
YYD3_k127_2758838_0 ASPIC and UnbV - - - 1.656e-249 792.0
YYD3_k127_2758838_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 427.0
YYD3_k127_2758838_2 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 359.0
YYD3_k127_2758838_3 diphosphomevalonate decarboxylase K01597 - 4.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 332.0
YYD3_k127_2758838_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 321.0
YYD3_k127_2758838_5 proteinase inhibitor I4 serpin K13963 - - 0.0000000000000000000000000000000000000000000000000000000000886 219.0
YYD3_k127_2758838_6 Domain of unknown function (DUF4294) - - - 0.00000000000000000000000000000000000000000000003186 176.0
YYD3_k127_2758838_7 lipopolysaccharide biosynthesis protein - - - 0.0000000003541 68.0
YYD3_k127_276598_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 502.0
YYD3_k127_276598_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 442.0
YYD3_k127_276598_2 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 304.0
YYD3_k127_2792197_0 Domain of unknown function (DUF4394) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 537.0
YYD3_k127_2792197_1 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000003767 173.0
YYD3_k127_2792197_2 Domain of unknown function (DUF4394) - - - 0.0000000000000000000000000000000000000000000001825 179.0
YYD3_k127_2798157_0 ABC-type polysaccharide polyol phosphate transport system ATPase component K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 321.0
YYD3_k127_2798157_1 ABC-2 type transporter K09690 - - 0.000000000000000000000000000000000000000000000000000000000000000000003356 243.0
YYD3_k127_2834053_0 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 599.0
YYD3_k127_2834053_1 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 560.0
YYD3_k127_2834053_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 304.0
YYD3_k127_2834053_3 Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001654 261.0
YYD3_k127_2834053_4 YceI-like domain - - - 0.00000000000000000000000000000002469 129.0
YYD3_k127_2834053_5 Protein conserved in bacteria - - - 0.000000000000000002895 91.0
YYD3_k127_2834053_6 PAP2 superfamily - - - 0.0001315 44.0
YYD3_k127_2865731_0 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000093 327.0
YYD3_k127_2865731_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000001952 192.0
YYD3_k127_2865731_2 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.000000000000000000000000000000000000000000000002166 178.0
YYD3_k127_2865731_3 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000000001378 173.0
YYD3_k127_2865731_4 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.0000000000000000000000000000000000008373 142.0
YYD3_k127_2865731_5 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000003223 91.0
YYD3_k127_2865731_6 C4-type zinc ribbon domain K07164 - - 0.00000000000000002085 83.0
YYD3_k127_2870921_0 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006055 415.0
YYD3_k127_2870921_1 Chaperone of endosialidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003843 306.0
YYD3_k127_2870921_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001044 235.0
YYD3_k127_2870921_3 Chaperone of endosialidase - - - 0.0000000000000000000000000000000000000004819 160.0
YYD3_k127_2870921_4 - - - - 0.0000000000000000003141 91.0
YYD3_k127_2870921_5 Hep Hag repeat protein - - - 0.00000000003665 78.0
YYD3_k127_2872056_0 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000000000000000000000000000002251 219.0
YYD3_k127_2872056_1 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000000000000000000008047 221.0
YYD3_k127_2874705_0 GTP-binding protein TypA K06207 - - 4.82e-321 990.0
YYD3_k127_2874705_1 - - - - 0.000000000000001178 89.0
YYD3_k127_2884657_0 Chaperone of endosialidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 456.0
YYD3_k127_2884657_1 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002779 286.0
YYD3_k127_2884657_2 PFAM GCN5-related N-acetyltransferase K00663 - 2.3.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000006577 244.0
YYD3_k127_2884657_3 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000003084 222.0
YYD3_k127_2884657_4 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000000000000000000000000000000000000000007416 166.0
YYD3_k127_2884657_5 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.0000000000000000000000000000000000000008215 148.0
YYD3_k127_2884657_6 tail collar domain protein - - - 0.0000000000000000001146 106.0
YYD3_k127_2884657_7 Protein of unknown function (DUF3010) - - - 0.0000000000000001633 85.0
YYD3_k127_2884657_8 Domain of unknown function (DU1801) - - - 0.0006911 42.0
YYD3_k127_2891058_0 protein secretion - - - 0.00000000000000000000000000000000000000000000000000225 207.0
YYD3_k127_2891058_1 metallopeptidase activity K13735 - - 0.0000000000000000000000000000000000000000005053 170.0
YYD3_k127_2891265_0 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 380.0
YYD3_k127_2891265_1 regulation of response to stimulus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007987 279.0
YYD3_k127_2908064_0 PFAM Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 610.0
YYD3_k127_2908064_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 278.0
YYD3_k127_2908064_2 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.000000000000000000000000000000000000000000000000000000000000000000001169 245.0
YYD3_k127_2908064_3 - - - - 0.000000000000000000000000000004183 124.0
YYD3_k127_2908064_4 Glycosyl transferases group 1 - - - 0.00000003119 59.0
YYD3_k127_2912249_0 TamB, inner membrane protein subunit of TAM complex - - - 6.131e-229 766.0
YYD3_k127_2912249_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 6.761e-205 646.0
YYD3_k127_2912249_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001109 275.0
YYD3_k127_2912249_3 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000002734 83.0
YYD3_k127_2912249_4 - - - - 0.0000000000003726 80.0
YYD3_k127_2912249_5 Peptidase family M23 - - - 0.0006466 48.0
YYD3_k127_2913807_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.074e-310 959.0
YYD3_k127_2913807_1 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000008189 225.0
YYD3_k127_2913807_2 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.000000000002865 67.0
YYD3_k127_2920915_0 Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01886 - 6.1.1.18 1.58e-240 754.0
YYD3_k127_2920915_1 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000002817 140.0
YYD3_k127_2920915_2 - - - - 0.000000000000000000000186 105.0
YYD3_k127_2923923_0 ABC transporter K15738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 399.0
YYD3_k127_2923923_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 378.0
YYD3_k127_292980_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 9.903e-243 754.0
YYD3_k127_292980_1 ABC transporter K06147,K11085 - - 9.706e-198 633.0
YYD3_k127_292980_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0071704 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 451.0
YYD3_k127_292980_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008266 269.0
YYD3_k127_292980_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000003682 177.0
YYD3_k127_292980_6 Pyridoxal-phosphate dependent enzyme K01505,K05396 - 3.5.99.7,4.4.1.15 0.00000000000002355 78.0
YYD3_k127_2930843_0 Zn_pept - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 504.0
YYD3_k127_2930843_1 Pkd domain containing protein - - - 0.0008157 54.0
YYD3_k127_2936383_0 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02622 - - 4.437e-203 641.0
YYD3_k127_2936383_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000000001414 178.0
YYD3_k127_2936383_3 toxin biosynthetic process K03558 - - 0.00000000000000388 82.0
YYD3_k127_2938342_0 OmpA MotB domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 611.0
YYD3_k127_2938342_1 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 458.0
YYD3_k127_2938342_2 Predicted periplasmic lipoprotein (DUF2279) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 296.0
YYD3_k127_2938342_3 long-chain fatty acid transporting porin activity K06076 - - 0.00000000000000000000000000000000000000000000000000004729 200.0
YYD3_k127_2938342_4 nicotinamide mononucleotide transporter K03811 - - 0.00000000000000000000000005941 115.0
YYD3_k127_2938342_5 amino acid K03294 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.00000257 50.0
YYD3_k127_2963724_0 TonB dependent receptor K02014 - - 1.441e-198 646.0
YYD3_k127_2963724_1 - - - - 0.000000000000000000000000000000000000000000009177 169.0
YYD3_k127_2963724_2 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.00000000000000000000000001122 113.0
YYD3_k127_29680_0 AAA ATPase domain - - - 6.664e-198 632.0
YYD3_k127_29680_1 catalase activity - - - 0.0000000000000000000000000000000000000000000804 168.0
YYD3_k127_2982403_0 Peptidase m28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 592.0
YYD3_k127_2982403_1 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004353 316.0
YYD3_k127_2982403_2 pyrroloquinoline quinone binding K01206,K01218 - 3.2.1.51,3.2.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000000008254 257.0
YYD3_k127_2982403_3 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000000676 221.0
YYD3_k127_2983760_0 Protein of unknown function (DUF3641) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 466.0
YYD3_k127_2983760_1 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 388.0
YYD3_k127_2983760_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 283.0
YYD3_k127_2983760_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000003299 214.0
YYD3_k127_2983760_4 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000188 166.0
YYD3_k127_2983760_5 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000001183 131.0
YYD3_k127_3001902_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006082 599.0
YYD3_k127_3001902_1 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000124 90.0
YYD3_k127_3001902_2 - - - - 0.0000000000000005892 87.0
YYD3_k127_3008345_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 459.0
YYD3_k127_3008345_1 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002065 277.0
YYD3_k127_3008345_2 PFAM Peptidase M1 membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000008052 263.0
YYD3_k127_3008345_3 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000002916 182.0
YYD3_k127_3008345_4 - - - - 0.000000000000000000114 94.0
YYD3_k127_3013775_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 4.329e-200 632.0
YYD3_k127_3013775_1 beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 421.0
YYD3_k127_3013775_2 DinB family - - - 0.000000000000000000000000000000000000000000000000000004205 194.0
YYD3_k127_3014868_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000003329 222.0
YYD3_k127_3014868_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000501 188.0
YYD3_k127_3014868_2 PFAM Bacterial regulatory protein, arsR family - - - 0.0000000000000000000000000000000000000000002592 160.0
YYD3_k127_3014868_3 Histidine phosphatase superfamily (branch 1) - - - 0.000000000000000000000000000003796 123.0
YYD3_k127_3014868_4 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000185 117.0
YYD3_k127_3016919_0 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008044 531.0
YYD3_k127_3016919_1 Protein of unknown function (DUF2459) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007116 247.0
YYD3_k127_3016919_2 Two component transcriptional regulator, LytTR family K02477 - - 0.00000000000000004885 85.0
YYD3_k127_3017523_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003479 602.0
YYD3_k127_3017523_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006042 344.0
YYD3_k127_3017523_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000001072 174.0
YYD3_k127_301779_0 Heat shock protein Hsp90 K04079 - - 8.428e-194 616.0
YYD3_k127_301779_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000002573 156.0
YYD3_k127_3027202_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007186 467.0
YYD3_k127_3027202_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007208 414.0
YYD3_k127_3028892_0 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 464.0
YYD3_k127_3028892_1 Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006618 256.0
YYD3_k127_3028892_2 YceI-like domain - - - 0.000000000000000000000000000000000000006939 149.0
YYD3_k127_3036807_0 PFAM Carbamoyl-phosphate synthase L chain, ATP binding K01961,K01965 - 6.3.4.14,6.4.1.2,6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004385 446.0
YYD3_k127_3036807_1 ATPase involved in DNA repair - - - 0.000000000000000005887 83.0
YYD3_k127_3036807_2 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 0.0000000000001071 73.0
YYD3_k127_3059180_0 Oxidoreductase domain protein - - - 1.105e-200 631.0
YYD3_k127_3059180_1 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 572.0
YYD3_k127_3059180_2 metallopeptidase activity - - - 0.00000000000000000000000002853 120.0
YYD3_k127_3081767_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 375.0
YYD3_k127_3081767_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002031 282.0
YYD3_k127_3084290_0 translation initiation factor activity K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 356.0
YYD3_k127_3084290_1 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000009025 220.0
YYD3_k127_3090761_0 TonB dependent receptor K16087 - - 3.015e-211 670.0
YYD3_k127_3090761_1 - - - - 0.0000000000000000000001485 105.0
YYD3_k127_3090761_2 sterol desaturase - - - 0.00002164 49.0
YYD3_k127_3091660_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 3.773e-249 788.0
YYD3_k127_3091660_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 359.0
YYD3_k127_3095395_0 Animal haem peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 389.0
YYD3_k127_3095395_1 Inward rectifier potassium channel K08715 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003286 254.0
YYD3_k127_3095395_2 Tricorn protease homolog K08676 - - 0.0000000000000000002886 91.0
YYD3_k127_3131289_0 Phosphate acyltransferases K07003 - - 1.2e-322 1016.0
YYD3_k127_3131289_1 Cupin domain - - - 0.0000000000000000000000000000000000001568 143.0
YYD3_k127_3131289_2 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.00000000000000003512 84.0
YYD3_k127_3147400_0 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004151 441.0
YYD3_k127_3147400_1 NAD dependent epimerase dehydratase family K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006807 286.0
YYD3_k127_3148322_0 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 355.0
YYD3_k127_3148322_1 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000452 308.0
YYD3_k127_3148322_2 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003002 259.0
YYD3_k127_3148322_3 KR domain K00038 - 1.1.1.53 0.000000000000000000000000000000000000000000005075 164.0
YYD3_k127_3148322_4 Acetyl-coenzyme A transporter 1 - - - 0.000000000000000000000000000000000000931 140.0
YYD3_k127_3152323_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002391 289.0
YYD3_k127_3152323_1 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000009997 229.0
YYD3_k127_316379_0 glycosyl transferase family 2 K07011 - - 4.934e-202 646.0
YYD3_k127_316379_1 Pseudouridine synthase K06179,K06180 - 5.4.99.23,5.4.99.24 0.00000000000000000000000000000000000007327 149.0
YYD3_k127_3178294_0 Glycosyl transferase family 21 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 442.0
YYD3_k127_3178294_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000003889 201.0
YYD3_k127_3187387_0 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 409.0
YYD3_k127_3187387_1 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 323.0
YYD3_k127_3187387_2 JAB/MPN domain K21140 - 3.13.1.6 0.000000000000000000000000000000008191 131.0
YYD3_k127_3195582_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 395.0
YYD3_k127_3195582_1 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000000000000000000754 193.0
YYD3_k127_3195582_2 PFAM Lipid polyisoprenoid-binding, YceI-like - - - 0.000000000000000000000000000000000000000000000000706 180.0
YYD3_k127_3195582_3 Cytochrome c - - - 0.000000000000000000000003024 106.0
YYD3_k127_3195939_0 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 550.0
YYD3_k127_3195939_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 359.0
YYD3_k127_3195939_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000001461 217.0
YYD3_k127_3195939_3 Cupin domain - - - 0.00000000000000000000000000009344 125.0
YYD3_k127_3195939_4 - - - - 0.0000005215 51.0
YYD3_k127_3224577_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD3_k127_3224577_1 Tetratricopeptide repeat - - - 0.000000107 64.0
YYD3_k127_3233712_0 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 6.193e-274 861.0
YYD3_k127_3233712_1 TonB dependent receptor - - - 1.403e-273 872.0
YYD3_k127_3233712_2 RagB SusD domain protein K21572 - - 0.000000000000000000000000000000000000000000000000000000001496 206.0
YYD3_k127_3245827_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 563.0
YYD3_k127_3245827_1 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000003231 213.0
YYD3_k127_3267524_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000008867 253.0
YYD3_k127_3267524_1 Pfam Bacterial regulatory proteins, luxR family - - - 0.000000000000000000000000000000006721 137.0
YYD3_k127_3271222_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 444.0
YYD3_k127_3271222_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 400.0
YYD3_k127_3271222_2 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004624 248.0
YYD3_k127_3271222_3 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000000000000000000000000001493 214.0
YYD3_k127_3275606_0 AhpC/TSA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004985 348.0
YYD3_k127_3275606_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.0000000000000000000000000000000000000000000000000000000000006104 217.0
YYD3_k127_327571_0 Proprotein convertase P-domain - - - 3.096e-234 764.0
YYD3_k127_327571_1 Putative esterase - - - 0.00000000000000000000000000003678 117.0
YYD3_k127_3292460_0 SPTR ATPase, P-type (Transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 484.0
YYD3_k127_3292460_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001234 270.0
YYD3_k127_3292460_2 IMP dehydrogenase activity K04767,K07182 - - 0.0000000000000000000000000000000000000000008043 160.0
YYD3_k127_3292460_3 PhoQ Sensor - - - 0.0000000000000001835 91.0
YYD3_k127_3292512_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 341.0
YYD3_k127_3292512_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000112 210.0
YYD3_k127_3292512_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0001425 47.0
YYD3_k127_3310725_0 FIST N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 569.0
YYD3_k127_3310725_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006303 467.0
YYD3_k127_3310725_2 FIST_C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 446.0
YYD3_k127_3310725_3 FIST N domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 343.0
YYD3_k127_3310725_4 FIST N domain - - - 0.00000000000000000000000173 102.0
YYD3_k127_3349300_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 8.655e-241 763.0
YYD3_k127_3349300_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006649 599.0
YYD3_k127_3349300_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 312.0
YYD3_k127_3349300_3 TIGRFAM Aspartate kinase K12524 - 1.1.1.3,2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 294.0
YYD3_k127_335434_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 310.0
YYD3_k127_335434_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004658 264.0
YYD3_k127_335434_2 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000456 246.0
YYD3_k127_335434_3 Head domain of trimeric autotransporter adhesin K21449 - - 0.00000000000000000000000000000000001688 151.0
YYD3_k127_3355802_0 PFAM Peptidase family M20 M25 M40 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 386.0
YYD3_k127_3355802_1 COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA K06169 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 302.0
YYD3_k127_3356945_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 455.0
YYD3_k127_3356945_1 flavin reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 320.0
YYD3_k127_3356945_2 Domain of unknown function (DUF4369) - - - 0.00000000000000000000000000000000000000000006038 167.0
YYD3_k127_3356945_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000008002 156.0
YYD3_k127_3373785_0 DNA helicase K03657 - 3.6.4.12 4.429e-215 683.0
YYD3_k127_3373785_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000729 200.0
YYD3_k127_3373785_2 - - - - 0.0000000000000000000000000001096 117.0
YYD3_k127_3373785_3 Galactose oxidase, central domain - - - 0.00004585 53.0
YYD3_k127_3387883_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000925 472.0
YYD3_k127_3387883_1 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 348.0
YYD3_k127_3387883_2 Tetratricopeptide - - - 0.0000000000000000000000000000000000000000000000000000000001346 211.0
YYD3_k127_3387883_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000000000000000005112 177.0
YYD3_k127_3387883_4 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000001004 174.0
YYD3_k127_3387883_5 - - - - 0.0000000000000000001206 99.0
YYD3_k127_3391436_0 polygalacturonase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000002029 237.0
YYD3_k127_3391436_1 Cellulase N-terminal ig-like domain - - - 0.0000000000000000000000000000000000000000000000000000000001048 217.0
YYD3_k127_3391436_2 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0005784 51.0
YYD3_k127_3407056_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 4.806e-318 984.0
YYD3_k127_3407056_1 Belongs to the HMG-CoA reductase family K00054 - 1.1.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 518.0
YYD3_k127_3407056_2 AMP-dependent synthetase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 402.0
YYD3_k127_3407056_3 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid K01823 - 5.3.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 368.0
YYD3_k127_3409664_0 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 1.223e-199 630.0
YYD3_k127_3409664_1 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004406 353.0
YYD3_k127_3409664_2 cellulase activity - - - 0.00000000000000000000000009384 119.0
YYD3_k127_3409664_3 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.00002557 46.0
YYD3_k127_3411566_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 6.243e-199 631.0
YYD3_k127_3411566_1 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 571.0
YYD3_k127_3411566_2 malonyl coa-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 323.0
YYD3_k127_3411566_3 acr, cog1678 K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000003854 224.0
YYD3_k127_3411566_4 SMART Nucleotide binding protein, PINc - - - 0.0000000000000000001538 89.0
YYD3_k127_3431308_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 584.0
YYD3_k127_3431308_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 365.0
YYD3_k127_3431308_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000001583 243.0
YYD3_k127_3438765_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000297 209.0
YYD3_k127_3438765_1 RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000002062 141.0
YYD3_k127_3444167_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000001344 253.0
YYD3_k127_3444167_1 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000002937 188.0
YYD3_k127_3444167_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000002074 175.0
YYD3_k127_3444167_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000004379 64.0
YYD3_k127_3455765_0 WD40 repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008631 502.0
YYD3_k127_3479942_0 Oxidoreductase, FAD FMN-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002181 411.0
YYD3_k127_3479942_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.000000000000000000000000000000000000000000000000063 185.0
YYD3_k127_3495374_0 Peptide-N-glycosidase F, C terminal - - - 1.064e-286 910.0
YYD3_k127_3504243_0 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 306.0
YYD3_k127_3504243_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000004834 213.0
YYD3_k127_3504243_2 Fibronectin, type III domain - - - 0.0004003 48.0
YYD3_k127_3515508_0 D-isomer specific 2-hydroxyacid dehydrogenase K00018,K00058 - 1.1.1.29,1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 367.0
YYD3_k127_3515508_1 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000003114 267.0
YYD3_k127_3515508_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000004852 194.0
YYD3_k127_3515508_3 PFAM EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000008263 198.0
YYD3_k127_3515508_4 Clp protease adaptor protein ClpS K06891 - - 0.000000000000000000000000331 111.0
YYD3_k127_352160_0 with chaperone activity ATP-binding subunit K03696 - - 1.261e-216 680.0
YYD3_k127_352160_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 481.0
YYD3_k127_352160_2 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004697 280.0
YYD3_k127_352160_3 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000002716 226.0
YYD3_k127_352160_4 transporter antisigma-factor antagonist STAS - - - 0.0000000000000000000000000000000000000000000000001075 180.0
YYD3_k127_3535533_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000008653 246.0
YYD3_k127_3535533_1 PFAM secretion protein HlyD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000075 238.0
YYD3_k127_3535533_2 Outer membrane protein beta-barrel domain - - - 0.000000000000000601 91.0
YYD3_k127_3535533_3 WD40-like Beta Propeller Repeat K03641 - - 0.0002061 44.0
YYD3_k127_3537753_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006482 594.0
YYD3_k127_3537753_1 CotH kinase protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 511.0
YYD3_k127_3537753_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008596 436.0
YYD3_k127_3537753_3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007696 312.0
YYD3_k127_3540577_0 DNA polymerase K02337,K14162 - 2.7.7.7 0.0 1077.0
YYD3_k127_3540577_1 peptide-methionine (S)-S-oxide reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004509 278.0
YYD3_k127_3540577_2 DNA photolyase K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000001532 251.0
YYD3_k127_3540577_3 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000000000001816 199.0
YYD3_k127_3541445_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 1.222e-302 943.0
YYD3_k127_3541445_1 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000007681 228.0
YYD3_k127_3541445_2 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.0000000000000000000000000000000000006182 144.0
YYD3_k127_3541445_3 - - - - 0.00004506 51.0
YYD3_k127_3551162_0 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 5.93e-197 619.0
YYD3_k127_3551162_1 Sugar (and other) transporter - - - 7.482e-194 612.0
YYD3_k127_3551162_2 Fumarylacetoacetase N-terminal K01555 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003138 554.0
YYD3_k127_3551162_3 homogentisate 12-dioxygenase K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004377 493.0
YYD3_k127_3551162_4 carboxymuconolactone decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008189 287.0
YYD3_k127_3551162_5 Penicillin-insensitive murein endopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000001087 233.0
YYD3_k127_3551162_6 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000001486 114.0
YYD3_k127_356558_0 BNR Asp-box repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004152 405.0
YYD3_k127_356558_1 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 293.0
YYD3_k127_356558_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000852 233.0
YYD3_k127_356558_3 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000002506 190.0
YYD3_k127_3568496_0 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 1.8e-220 713.0
YYD3_k127_3568496_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 327.0
YYD3_k127_3568496_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 304.0
YYD3_k127_3568496_3 Peptidyl-prolyl cis-trans isomerase K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000004913 241.0
YYD3_k127_3568496_4 PFAM Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000004142 209.0
YYD3_k127_3568496_5 - - - - 0.000000000000000000000000000000000000000005868 157.0
YYD3_k127_3568496_6 ROK family K00845,K00886 - 2.7.1.2,2.7.1.63 0.000000000000000000000000000000000001438 141.0
YYD3_k127_3568496_7 Sensor of ECF-type sigma factor - - - 0.0000000000000000003264 93.0
YYD3_k127_3568496_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000447 42.0
YYD3_k127_3589197_0 MoeZ MoeB domain K21029,K21147 - 2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 539.0
YYD3_k127_3589197_1 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009842 349.0
YYD3_k127_3589197_2 JAB/MPN domain K21140 - 3.13.1.6 0.000000000000000000000009703 103.0
YYD3_k127_3589197_3 TIGRFAM MoaD family protein K03636 - - 0.00000000000000001095 87.0
YYD3_k127_3589437_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 563.0
YYD3_k127_3589437_1 protein conserved in bacteria (DUF2179) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 369.0
YYD3_k127_3589437_2 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005234 272.0
YYD3_k127_3589437_3 steroid dehydrogenase activity, acting on the CH-CH group of donors K12343,K12344,K14570 GO:0000003,GO:0000166,GO:0001501,GO:0001505,GO:0001655,GO:0001889,GO:0003006,GO:0003674,GO:0003824,GO:0003865,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006091,GO:0006629,GO:0006694,GO:0006702,GO:0006706,GO:0006720,GO:0006721,GO:0006725,GO:0006805,GO:0006807,GO:0006950,GO:0007154,GO:0007267,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007530,GO:0007548,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008209,GO:0008406,GO:0008584,GO:0008610,GO:0009055,GO:0009056,GO:0009058,GO:0009267,GO:0009410,GO:0009605,GO:0009636,GO:0009719,GO:0009725,GO:0009917,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010817,GO:0012505,GO:0014070,GO:0014074,GO:0014823,GO:0014850,GO:0016020,GO:0016042,GO:0016101,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0016627,GO:0016999,GO:0017144,GO:0018879,GO:0018894,GO:0018958,GO:0018963,GO:0019752,GO:0021510,GO:0021536,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021794,GO:0021854,GO:0021983,GO:0021987,GO:0022410,GO:0022414,GO:0022900,GO:0023052,GO:0030283,GO:0030431,GO:0030539,GO:0030540,GO:0030900,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031984,GO:0032354,GO:0032355,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0033218,GO:0033554,GO:0033574,GO:0033764,GO:0033765,GO:0033993,GO:0034641,GO:0034698,GO:0034754,GO:0035270,GO:0035690,GO:0036094,GO:0036477,GO:0042133,GO:0042175,GO:0042180,GO:0042181,GO:0042221,GO:0042428,GO:0042430,GO:0042445,GO:0042446,GO:0042448,GO:0042493,GO:0042537,GO:0042594,GO:0042745,GO:0042747,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043627,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0046483,GO:0046546,GO:0046660,GO:0046661,GO:0046677,GO:0046683,GO:0048037,GO:0048471,GO:0048511,GO:0048512,GO:0048513,GO:0048545,GO:0048608,GO:0048731,GO:0048732,GO:0048806,GO:0048856,GO:0050661,GO:0050662,GO:0050802,GO:0050896,GO:0051384,GO:0051591,GO:0051716,GO:0055114,GO:0060322,GO:0060348,GO:0060416,GO:0060992,GO:0061008,GO:0061370,GO:0061458,GO:0065007,GO:0065008,GO:0070402,GO:0070848,GO:0070852,GO:0070887,GO:0071310,GO:0071320,GO:0071363,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071392,GO:0071394,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071496,GO:0071548,GO:0071549,GO:0071704,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071871,GO:0071872,GO:0097159,GO:0097164,GO:0097327,GO:0097458,GO:0098827,GO:0120025,GO:1901160,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701 1.3.1.22 0.000000000000000001259 85.0
YYD3_k127_3614324_0 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004734 561.0
YYD3_k127_3614324_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 538.0
YYD3_k127_3614324_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006798 293.0
YYD3_k127_3614324_3 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001023 258.0
YYD3_k127_3614324_4 Acyl carrier protein phosphodiesterase - - - 0.0000000000000000000000000000000000003801 147.0
YYD3_k127_3614324_5 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.000000000000000000001998 104.0
YYD3_k127_3614324_6 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000001962 70.0
YYD3_k127_3617493_0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K06169 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001035 246.0
YYD3_k127_3617493_1 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - 0.00000000000000000000000000000000000000171 149.0
YYD3_k127_3617493_2 CAAX protease self-immunity K07052 - - 0.000000000000000000000000002142 123.0
YYD3_k127_3617493_3 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.0001211 45.0
YYD3_k127_3619467_0 Purple acid Phosphatase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 474.0
YYD3_k127_3619467_1 Membrane - - - 0.0000000000000000000000000000000000001139 160.0
YYD3_k127_3624876_0 glutamate decarboxylase activity K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 452.0
YYD3_k127_3624876_1 DNA alkylation repair - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006233 368.0
YYD3_k127_3624876_2 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 299.0
YYD3_k127_3624876_3 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000008025 257.0
YYD3_k127_3624876_4 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000007196 217.0
YYD3_k127_3625974_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1273.0
YYD3_k127_3625974_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000297 150.0
YYD3_k127_3633474_0 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005451 428.0
YYD3_k127_3633474_1 acetyltransferase - - - 0.00000000000000000000000000000000000000008932 155.0
YYD3_k127_3643886_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000725 455.0
YYD3_k127_3643886_1 nuclear chromosome segregation K02557,K18376 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 381.0
YYD3_k127_3643886_2 Lamin Tail Domain - - - 0.000000000000000000000000002204 121.0
YYD3_k127_3678653_0 Alpha-amylase domain K21575 - 3.2.1.135 4.498e-200 634.0
YYD3_k127_3678653_1 Metal-dependent hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004509 262.0
YYD3_k127_3678653_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000004275 186.0
YYD3_k127_3684166_0 cytochrome C peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008554 515.0
YYD3_k127_3684166_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 454.0
YYD3_k127_3685630_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005279 339.0
YYD3_k127_3685630_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001164 282.0
YYD3_k127_3685630_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000001872 241.0
YYD3_k127_3708031_0 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008416 344.0
YYD3_k127_3708031_1 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.00000000000005062 71.0
YYD3_k127_3730746_0 PFAM YicC-like family, N-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000001166 247.0
YYD3_k127_3730746_1 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000003369 219.0
YYD3_k127_3730746_2 Belongs to the bacterial histone-like protein family K03530 - - 0.0000000000000000000000000000000000000003421 150.0
YYD3_k127_3730746_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.000000000000000000000000000000000000003295 153.0
YYD3_k127_3730746_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000006853 137.0
YYD3_k127_3730746_5 protein affecting Mg2 Co2 transport K06195 - - 0.000000000000000000000000000001674 125.0
YYD3_k127_3730746_6 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.00000000000000000077 87.0
YYD3_k127_3740590_0 Belongs to the proline racemase family K12658 - 5.1.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 518.0
YYD3_k127_3740590_1 Glycine D-amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 413.0
YYD3_k127_3740590_2 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000717 133.0
YYD3_k127_3748185_0 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009891 379.0
YYD3_k127_3748185_1 penicillin-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005491 262.0
YYD3_k127_3748185_2 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000002466 84.0
YYD3_k127_3748185_3 MORN repeat protein - - - 0.000000000005382 74.0
YYD3_k127_3749178_0 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 608.0
YYD3_k127_3749178_1 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000238 207.0
YYD3_k127_3749178_2 Sec-independent protein translocase protein TatA K03116 - - 0.0000000000000000001819 89.0
YYD3_k127_3749178_3 unfolded protein binding K06142 - - 0.0000000000000000168 89.0
YYD3_k127_3749178_4 Domain of unknown function (DUF4286) - - - 0.0000000002722 62.0
YYD3_k127_3756584_0 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 608.0
YYD3_k127_3756584_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000001633 248.0
YYD3_k127_3766033_0 Domain of unknown function (DUF4380) - - - 0.0000000000000000000000000000001146 127.0
YYD3_k127_3766033_1 - - - - 0.000000004063 69.0
YYD3_k127_3784533_0 Lamin Tail Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 401.0
YYD3_k127_3789905_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 534.0
YYD3_k127_3789905_1 mannose-1-phosphate guanylyltransferase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 367.0
YYD3_k127_3789905_2 COG0438 Glycosyltransferase K13004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008081 352.0
YYD3_k127_3789905_3 glycosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000003707 225.0
YYD3_k127_3789905_4 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000001217 169.0
YYD3_k127_3811519_0 RNA polymerase, sigma-54 factor K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 530.0
YYD3_k127_3811519_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 463.0
YYD3_k127_3811519_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 428.0
YYD3_k127_3811519_3 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676 389.0
YYD3_k127_3811519_4 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 383.0
YYD3_k127_3811519_5 DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 373.0
YYD3_k127_3811519_6 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000003926 201.0
YYD3_k127_3811519_7 - - - - 0.0000004075 55.0
YYD3_k127_3821291_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 358.0
YYD3_k127_3821291_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003074 246.0
YYD3_k127_3821291_2 tail collar domain protein - - - 0.0000000000000000000000000000000000000000000000000000000002255 219.0
YYD3_k127_3821291_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000002753 220.0
YYD3_k127_3821291_4 PFAM Lipid polyisoprenoid-binding, YceI-like - - - 0.0000000000000000000000000000000000000000000000000113 186.0
YYD3_k127_3821291_5 Cytochrome c - - - 0.00000000000000000000000009526 110.0
YYD3_k127_3821291_6 tRNA_anti-like - - - 0.000000000000000001691 91.0
YYD3_k127_3826401_0 Beta-eliminating lyase - - - 5.897e-240 748.0
YYD3_k127_3826401_2 TIGRFAM Por secretion system C-terminal sorting domain - - - 0.000000004435 63.0
YYD3_k127_3842254_0 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.000000000000000000000000000000000000000000000000001618 185.0
YYD3_k127_3860599_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 411.0
YYD3_k127_3860599_1 periplasmic protein kinase ArgK and related K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000003808 227.0
YYD3_k127_3860599_2 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000003622 173.0
YYD3_k127_3860599_3 Methylmalonyl-CoA mutase N-terminal domain subunit K01847 - 5.4.99.2 0.0000000000003938 81.0
YYD3_k127_3864875_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 575.0
YYD3_k127_3864875_1 Na+/Pi-cotransporter K03324 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 316.0
YYD3_k127_3864875_2 Collagen triple helix repeat (20 copies) - - - 0.000000000000000000000000000000000000000000007215 179.0
YYD3_k127_3864875_3 - - - - 0.00000000000000000002555 95.0
YYD3_k127_3866055_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.00000000000000000000000000000000000000000000000000001676 198.0
YYD3_k127_3866055_1 Polysaccharide biosynthesis C-terminal domain - - - 0.0000000000000000000000000000000000000001197 166.0
YYD3_k127_3866055_2 Fibronectin type 3 domain - - - 0.00000000000000395 83.0
YYD3_k127_3879384_0 of the AAA class - - - 1.906e-252 788.0
YYD3_k127_3879384_1 Protein of unknown function (DUF983) - - - 0.0000000000000000000000002611 110.0
YYD3_k127_3879384_2 PFAM D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000005085 85.0
YYD3_k127_3903469_0 - - - - 0.0 1364.0
YYD3_k127_3903733_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K17722 - 1.3.1.1 0.0 1001.0
YYD3_k127_3903733_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 1.383e-272 850.0
YYD3_k127_3903733_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009132 376.0
YYD3_k127_3903733_3 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 295.0
YYD3_k127_3914208_0 Sigma-54 interaction domain K03405 - 6.6.1.1 7.682e-206 650.0
YYD3_k127_3914208_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006932 614.0
YYD3_k127_3914208_2 von Willebrand factor, type A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000307 455.0
YYD3_k127_3914208_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 426.0
YYD3_k127_3914208_4 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000000000000004994 199.0
YYD3_k127_3914208_5 Beta-lactamase - - - 0.0000000000000000000000000000000000000001032 162.0
YYD3_k127_3926563_0 Heavy metal translocating P-type atpase K01533,K17686 - 3.6.3.4,3.6.3.54 0.0 1162.0
YYD3_k127_3926563_1 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 394.0
YYD3_k127_3926563_2 CorA-like Mg2+ transporter protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 323.0
YYD3_k127_3926563_3 PFAM Bacterial regulatory helix-turn-helix proteins, AraC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003222 273.0
YYD3_k127_3926563_4 Heavy-metal-associated domain - - - 0.000000000000000000000000000000001165 135.0
YYD3_k127_3926563_5 Protein of unknown function (DUF3347) - - - 0.0000000000000000000000000006517 120.0
YYD3_k127_3928669_0 Phosphoesterase PA-phosphatase related - - - 3.855e-233 727.0
YYD3_k127_3928669_2 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000313 99.0
YYD3_k127_3937425_0 Psort location OuterMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000877 554.0
YYD3_k127_3957320_0 PFAM GH3 auxin-responsive promoter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 495.0
YYD3_k127_3957320_1 IMG reference gene - - - 0.0000000000000000000000000000004846 128.0
YYD3_k127_3987938_0 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000001396 216.0
YYD3_k127_3988693_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 325.0
YYD3_k127_3988693_1 Protein of unknown function (DUF2442) - - - 0.000000000000000000002144 95.0
YYD3_k127_4001592_0 TonB dependent receptor - - - 2.035e-307 977.0
YYD3_k127_4001592_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 323.0
YYD3_k127_4001592_2 Starch-binding associating with outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 312.0
YYD3_k127_4001592_3 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000006585 222.0
YYD3_k127_4001592_4 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000001047 214.0
YYD3_k127_4001592_5 CAAX amino terminal protease family K07052 - - 0.00000000000000000000000000000000000000000000002448 181.0
YYD3_k127_4001592_6 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000002395 157.0
YYD3_k127_400408_0 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008324 569.0
YYD3_k127_400408_1 chlorophyll binding K03640 - - 0.0000000000000000000000000000000000000000000000000000006795 214.0
YYD3_k127_400408_2 Phage derived protein Gp49-like (DUF891) - - - 0.00000000000000000000000001075 113.0
YYD3_k127_400408_3 Helix-turn-helix domain - - - 0.00000000000000000000000002375 111.0
YYD3_k127_400408_4 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000007081 108.0
YYD3_k127_4008743_0 Amidophosphoribosyltransferase K00764 - 2.4.2.14 8.168e-289 899.0
YYD3_k127_4008743_1 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 571.0
YYD3_k127_4008743_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009569 469.0
YYD3_k127_4008743_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 348.0
YYD3_k127_4027246_0 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 430.0
YYD3_k127_4027246_1 Hep Hag repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 339.0
YYD3_k127_4030728_0 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000001188 136.0
YYD3_k127_4030728_1 - - - - 0.00000005129 64.0
YYD3_k127_4033354_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 599.0
YYD3_k127_4033354_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003483 248.0
YYD3_k127_4033354_2 Polysaccharide biosynthesis protein K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000003188 239.0
YYD3_k127_4033354_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003402 226.0
YYD3_k127_4033354_4 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000005069 217.0
YYD3_k127_4033354_5 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000002453 110.0
YYD3_k127_4033354_6 ATPase kinase involved in NAD metabolism - - - 0.000000000000000001872 93.0
YYD3_k127_4040962_0 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000006968 199.0
YYD3_k127_4040962_1 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000005678 161.0
YYD3_k127_4040962_2 Belongs to the peptidase S8 family - - - 0.0007031 47.0
YYD3_k127_4054035_0 GHMP kinases N terminal domain K07031 - 2.7.1.168 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 445.0
YYD3_k127_4054035_1 Nucleotidyl transferase K15669 - 2.7.7.71 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008099 419.0
YYD3_k127_4054035_2 B-1 B cell differentiation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 432.0
YYD3_k127_4054035_3 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001433 276.0
YYD3_k127_4054035_4 - - - - 0.000000000000000000000000000000000247 135.0
YYD3_k127_4054035_5 - - - - 0.00000000001167 72.0
YYD3_k127_4054035_6 Lipase (class 2) - - - 0.0000001325 66.0
YYD3_k127_4061244_0 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 443.0
YYD3_k127_4061244_1 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 416.0
YYD3_k127_4061244_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000001014 225.0
YYD3_k127_4061244_3 Domain of unknown function (DUF4397) - - - 0.0000000000000000000000000000000000000000000000783 195.0
YYD3_k127_4061244_4 - - - - 0.000000000000000000000000001794 113.0
YYD3_k127_4063520_0 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 344.0
YYD3_k127_4063520_1 Chloramphenicol acetyltransferase K19271 - 2.3.1.28 0.0000000000000000000000000000000000000000001902 161.0
YYD3_k127_4063520_2 - - - - 0.00000000000000000000000000000000004182 138.0
YYD3_k127_4063520_3 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000000000000000000000000001434 149.0
YYD3_k127_4064236_0 Sodium/hydrogen exchanger family K03316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007214 566.0
YYD3_k127_4064236_1 Protein of unknown function (DUF1706) - - - 0.000000000000000000000000000000000000000000000000000000000000003073 220.0
YYD3_k127_4064236_2 - - - - 0.0000000000000000000000002286 118.0
YYD3_k127_4068114_0 alginic acid biosynthetic process - - - 3.862e-261 823.0
YYD3_k127_4068114_1 Putative glucoamylase - - - 2.526e-197 624.0
YYD3_k127_4068114_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 417.0
YYD3_k127_4068114_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 398.0
YYD3_k127_4068114_4 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001694 242.0
YYD3_k127_4068114_5 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000001355 230.0
YYD3_k127_4092644_0 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007076 399.0
YYD3_k127_4092644_1 CBS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002752 236.0
YYD3_k127_4092644_2 TM2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000871 216.0
YYD3_k127_4092644_3 Permease, YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000003197 214.0
YYD3_k127_4092644_4 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000002633 200.0
YYD3_k127_4096580_0 peptidylprolyl isomerase K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000001874 217.0
YYD3_k127_4096580_1 Doxx family - - - 0.000000001012 71.0
YYD3_k127_4096580_2 Belongs to the ompA family - - - 0.000000003086 70.0
YYD3_k127_4096580_3 Alpha/beta hydrolase family - - - 0.00000565 54.0
YYD3_k127_4099247_0 Required for chromosome condensation and partitioning K03529 - - 3.535e-260 839.0
YYD3_k127_4099247_1 queuosine salvage K09125 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 331.0
YYD3_k127_4099247_2 peptidase activity K18988 - 3.4.16.4 0.0000000000002924 81.0
YYD3_k127_4102102_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 471.0
YYD3_k127_4102102_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 290.0
YYD3_k127_4102102_2 Psort location Extracellular, score K01173 - - 0.000000000262 65.0
YYD3_k127_4117522_0 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 492.0
YYD3_k127_4117522_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000598 409.0
YYD3_k127_4117522_2 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) K07094 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 310.0
YYD3_k127_4117522_3 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 302.0
YYD3_k127_4117522_4 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 294.0
YYD3_k127_4117522_5 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000004394 194.0
YYD3_k127_4117522_6 GHMP kinases N terminal domain K00869 - 2.7.1.36 0.00000000000000000000000000000000000000001087 164.0
YYD3_k127_4117522_7 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000001226 131.0
YYD3_k127_4117522_8 RecX family K03565 - - 0.0000000000000000000002722 103.0
YYD3_k127_4144277_0 PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 435.0
YYD3_k127_4144277_1 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 319.0
YYD3_k127_4144277_2 Phenylacetate-CoA oxygenase K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 300.0
YYD3_k127_4144277_3 Phenylacetic acid degradation protein K02612 GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 - 0.000000000000000000000000000000000000000000000002842 177.0
YYD3_k127_4144573_0 nuclear chromosome segregation K20444 - - 0.0000000000009715 79.0
YYD3_k127_4144573_1 IMG reference gene - - - 0.00000000004227 74.0
YYD3_k127_4144573_2 Involved in the tonB-independent uptake of proteins - - - 0.00002662 48.0
YYD3_k127_4159125_0 Peptidase S9, prolyl oligopeptidase, catalytic domain K01354 - 3.4.21.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007739 528.0
YYD3_k127_4159125_1 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004752 248.0
YYD3_k127_4172727_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000998 241.0
YYD3_k127_4172727_1 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000001391 199.0
YYD3_k127_4172727_2 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000007799 134.0
YYD3_k127_4172727_3 Belongs to the ompA family - - - 0.00000000000000001564 84.0
YYD3_k127_4197658_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005878 540.0
YYD3_k127_4197658_1 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 550.0
YYD3_k127_4197658_10 MraZ protein, putative antitoxin-like K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.00000000000000000000000000000000000000000004883 166.0
YYD3_k127_4197658_11 Cell division protein K03589 - - 0.0000000000000000000000000000000000000001895 159.0
YYD3_k127_4197658_12 - - - - 0.000000000002419 70.0
YYD3_k127_4197658_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 535.0
YYD3_k127_4197658_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 523.0
YYD3_k127_4197658_4 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 504.0
YYD3_k127_4197658_5 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004946 428.0
YYD3_k127_4197658_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006423 428.0
YYD3_k127_4197658_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 420.0
YYD3_k127_4197658_8 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008163 405.0
YYD3_k127_4197658_9 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006332 338.0
YYD3_k127_4201245_0 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000002056 175.0
YYD3_k127_4203260_0 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 417.0
YYD3_k127_4203260_1 Beta-ketoacyl synthase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 344.0
YYD3_k127_4203260_2 Polysaccharide deacetylase K22278 - 3.5.1.104 0.0000003572 56.0
YYD3_k127_4211710_0 TonB-dependent receptor plug domain K02014 - - 1.006e-265 846.0
YYD3_k127_4230172_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 7.966e-229 714.0
YYD3_k127_4230172_1 COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 469.0
YYD3_k127_4230172_2 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000002592 150.0
YYD3_k127_4230172_3 - - - - 0.00000000000000001401 89.0
YYD3_k127_4230172_4 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000005044 58.0
YYD3_k127_4245366_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 377.0
YYD3_k127_4245366_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000003786 122.0
YYD3_k127_4247292_0 COG1807 4-amino-4-deoxy-L-arabinose transferase and related K07264 - 2.4.2.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 372.0
YYD3_k127_4247292_1 Catalyzes the hydrolysis of K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000008865 204.0
YYD3_k127_4247292_2 Outer membrane protein beta-barrel domain - - - 0.0000000000002254 79.0
YYD3_k127_4251728_0 PFAM Integral membrane protein TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 308.0
YYD3_k127_4251728_1 NlpE N-terminal domain - - - 0.000000000000000000000000000000000003511 145.0
YYD3_k127_4251728_2 response to heat K03668,K09914 - - 0.0000000000000000000000000000001423 129.0
YYD3_k127_4251728_3 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - - 0.000000000000000000000000000002153 123.0
YYD3_k127_4251728_4 with different specificities (related to short-chain alcohol - - - 0.00000003873 55.0
YYD3_k127_4278632_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 1.017e-209 674.0
YYD3_k127_4278632_2 PFAM GlcNAc-PI de-N-acetylase - - - 0.000006384 57.0
YYD3_k127_428803_0 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005005 456.0
YYD3_k127_428803_1 Transcriptional regulator - - - 0.0000000000000000000000002591 107.0
YYD3_k127_428803_2 FG-GAP repeat - - - 0.0000009366 52.0
YYD3_k127_4291167_0 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009487 364.0
YYD3_k127_4291167_1 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 356.0
YYD3_k127_4291167_2 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000000001411 141.0
YYD3_k127_4327484_0 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004038 420.0
YYD3_k127_4327484_1 Cupin domain - - - 0.0000000000000003239 83.0
YYD3_k127_434122_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 371.0
YYD3_k127_434122_1 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000000000000000000000000000001434 231.0
YYD3_k127_434122_2 Cystathionine beta-synthase K01697 - 4.2.1.22 0.0000000000000000000000000000000006907 132.0
YYD3_k127_4374794_0 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000001219 168.0
YYD3_k127_4374794_1 Thioredoxin-like - - - 0.0000000000000000000000177 104.0
YYD3_k127_4406633_0 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004235 373.0
YYD3_k127_4406633_1 Paraquat-inducible protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 381.0
YYD3_k127_4406633_2 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 300.0
YYD3_k127_4406633_4 PFAM Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004194 261.0
YYD3_k127_4406633_5 Domain of unknown function (DUF892) - - - 0.00000000000000000000000000000000000000006453 160.0
YYD3_k127_4406633_6 PFAM surface antigen variable number repeat - - - 0.000000000000000000000000001718 120.0
YYD3_k127_4418253_0 glycosyltransferase 36 associated K00702,K13688 - 2.4.1.20 0.0 1326.0
YYD3_k127_4418253_1 Domain in cystathionine beta-synthase and other proteins. - - - 3.329e-267 836.0
YYD3_k127_4418253_3 aconitate hydratase K01681 - 4.2.1.3 0.0002356 43.0
YYD3_k127_4435746_0 NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008988 551.0
YYD3_k127_4435746_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 533.0
YYD3_k127_4435746_2 export protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 509.0
YYD3_k127_4435746_3 - - - - 0.000000000000000000000000000000005493 134.0
YYD3_k127_4446461_0 glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.0000000000000000000000000000000000000000000000000000000000000003773 222.0
YYD3_k127_4446461_1 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000001249 199.0
YYD3_k127_4446461_2 START domain - - - 0.00000000000000000005616 97.0
YYD3_k127_4446461_3 Rhodanese Homology Domain - - - 0.000000000000000007267 89.0
YYD3_k127_4446461_4 WG containing repeat - - - 0.000000001757 61.0
YYD3_k127_4446461_5 - - - - 0.00000008807 61.0
YYD3_k127_4446461_6 restriction endonuclease K07448 - - 0.0000009442 61.0
YYD3_k127_4447869_0 DNA polymerase K02347 - - 0.000000000000000000000000000000000000000000000000000000000004828 223.0
YYD3_k127_4447869_1 ABC-type uncharacterized transport system - - - 0.0000000000000000000000000000000000000000000000001921 182.0
YYD3_k127_4447869_2 Domain of unknown function (DUF4340) - - - 0.00000000000000002605 91.0
YYD3_k127_4447869_3 amidohydrolase - - - 0.00000001203 56.0
YYD3_k127_4451388_0 ABC transporter K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 393.0
YYD3_k127_4451388_1 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002497 244.0
YYD3_k127_4451388_2 COG1175 ABC-type sugar transport systems permease components K10233 - - 0.00000000000104 70.0
YYD3_k127_4451519_0 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006959 616.0
YYD3_k127_4451519_1 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 532.0
YYD3_k127_4468069_0 PFAM BNR Asp-box repeat - - - 0.0 1099.0
YYD3_k127_4468069_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 349.0
YYD3_k127_4468069_2 Domain of unknown function (DUF3817) - GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000001785 85.0
YYD3_k127_4472838_0 PFAM RNA polymerase sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008171 490.0
YYD3_k127_4472838_1 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 325.0
YYD3_k127_4472838_2 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000000000000000003732 218.0
YYD3_k127_4472838_3 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000006396 191.0
YYD3_k127_4472838_4 - - - - 0.00000000000000000000000000000000000001376 153.0
YYD3_k127_4481624_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 384.0
YYD3_k127_4481624_1 PFAM NAD dependent epimerase dehydratase family K07071 - - 0.000000000000000000000000000000001825 136.0
YYD3_k127_4481624_2 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000006537 86.0
YYD3_k127_4483035_0 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007097 351.0
YYD3_k127_4483035_1 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008337 301.0
YYD3_k127_4483035_2 hydrolase family 65, central catalytic K00691 - 2.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000002461 234.0
YYD3_k127_4483035_3 beta-phosphoglucomutase K01838 - 5.4.2.6 0.00000000000000000000000000000000000000000000000000000544 214.0
YYD3_k127_4483035_4 Phosphoglycerate mutase family K08296 - - 0.000000000000000000000000000000000000007531 150.0
YYD3_k127_448320_0 - - - - 1.194e-229 737.0
YYD3_k127_448320_1 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 392.0
YYD3_k127_448320_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000001342 210.0
YYD3_k127_448320_3 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family K02503 - - 0.00002812 46.0
YYD3_k127_4500933_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 8.863e-245 762.0
YYD3_k127_4500933_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005293 528.0
YYD3_k127_4500933_2 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 368.0
YYD3_k127_4500933_3 FeS assembly ATPase SufC K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006342 355.0
YYD3_k127_4500933_4 TIGRFAM FeS assembly protein SufD K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001701 261.0
YYD3_k127_4500933_5 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000007743 239.0
YYD3_k127_4500933_6 Fe-S metabolism associated domain protein K02426 - - 0.0000000000000000000000000000000000000000000001108 177.0
YYD3_k127_4500933_7 transcriptional regulator - - - 0.0000000000000000000000000000000000000001653 153.0
YYD3_k127_4527907_0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 349.0
YYD3_k127_4527907_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 320.0
YYD3_k127_4527907_2 HAD-superfamily hydrolase subfamily IA, variant 3 K20866 - 3.1.3.10 0.0000000000000000000000000000000000001472 149.0
YYD3_k127_4527907_3 Lysine exporter protein (Lyse ygga) - - - 0.0000008334 55.0
YYD3_k127_4545705_0 Belongs to the UbiD family K03182 - 4.1.1.98 1.501e-268 838.0
YYD3_k127_4545705_1 RNA-binding PUA-like domain of methyltransferase RsmF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 316.0
YYD3_k127_4545705_2 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.0000000000000000000000129 117.0
YYD3_k127_4545705_3 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000003059 83.0
YYD3_k127_4561323_0 Protein of unknown function, DUF481 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 297.0
YYD3_k127_4561323_1 - - - - 0.0000000000000000000000000000000000000009576 153.0
YYD3_k127_4561323_2 - - - - 0.0000000000000000000000000000003367 129.0
YYD3_k127_4561323_3 Uncharacterized protein family, UPF0114 - - - 0.00000000000000000002238 97.0
YYD3_k127_4561323_4 - - - - 0.00004872 46.0
YYD3_k127_4573575_0 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 372.0
YYD3_k127_4573575_1 protein secretion - - - 0.000000000000000000000000000000000000000000000001123 198.0
YYD3_k127_457530_0 Conserved Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 430.0
YYD3_k127_457530_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 369.0
YYD3_k127_457530_2 Surface antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 343.0
YYD3_k127_459220_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 392.0
YYD3_k127_459220_1 Fungalysin metallopeptidase (M36) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 373.0
YYD3_k127_459220_2 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.00000000000000001965 85.0
YYD3_k127_4592837_0 TIGRFAM N-terminal double-transmembrane domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 534.0
YYD3_k127_4592837_1 Carboxylesterase family - - - 0.00000000000000000000003668 108.0
YYD3_k127_4610589_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 9.757e-228 716.0
YYD3_k127_4610589_1 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007433 545.0
YYD3_k127_4610589_2 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000000000001108 206.0
YYD3_k127_4610589_3 Protein of unknown function (DUF2723) - - - 0.000000000000000000000000000001606 125.0
YYD3_k127_461845_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008113 462.0
YYD3_k127_461845_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000001921 152.0
YYD3_k127_461845_2 - - - - 0.0000000000000000000004976 107.0
YYD3_k127_461845_3 Type VI secretion system effector, Hcp1 K06887,K11903 - - 0.00009347 49.0
YYD3_k127_463382_0 Cell envelope biogenesis protein OmpA K02557 - - 0.000000000000000000000000000000000000000000000000000000000005925 224.0
YYD3_k127_463382_1 - - - - 0.00000000000000000000402 101.0
YYD3_k127_463382_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000002131 72.0
YYD3_k127_463382_3 Immunoglobulin - - - 0.000009836 57.0
YYD3_k127_4645826_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 476.0
YYD3_k127_4645826_1 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 375.0
YYD3_k127_4645826_2 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 325.0
YYD3_k127_4645826_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001795 242.0
YYD3_k127_4645826_4 2',5' RNA ligase - - - 0.0000000000000000000000000000002589 129.0
YYD3_k127_4658122_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 428.0
YYD3_k127_4658122_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 384.0
YYD3_k127_4658122_2 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K15460 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016426,GO:0016430,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.223 0.000000000000000000008431 97.0
YYD3_k127_4658122_3 - - - - 0.0000000000002429 82.0
YYD3_k127_4658122_4 Belongs to the leguminous lectin family - - - 0.00002384 56.0
YYD3_k127_4660302_0 COG0308 Aminopeptidase N - - - 0.0 1084.0
YYD3_k127_4660302_1 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009086 537.0
YYD3_k127_4660302_2 Belongs to the UPF0176 family K07146 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 438.0
YYD3_k127_4660302_3 COG0659 Sulfate permease and related transporters (MFS superfamily) K01673,K03321 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006393 437.0
YYD3_k127_4660302_4 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 308.0
YYD3_k127_4660302_5 D-ala-D-ala dipeptidase K08641 - 3.4.13.22 0.00000000000000000000000000000000000000000000000000000004842 206.0
YYD3_k127_4660302_6 Universal stress protein family - - - 0.00000000000000000000000000000000000000004582 162.0
YYD3_k127_4660302_7 Protein of unknown function (DUF1761) - - - 0.000000000000000000000000000003651 124.0
YYD3_k127_4660302_8 - K13652 - - 0.00000000000000000000000000001874 124.0
YYD3_k127_4660802_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 601.0
YYD3_k127_4660802_1 tRNA wobble adenosine to inosine editing - - - 0.00000000000000000000000000000000000000000000002514 171.0
YYD3_k127_4660802_2 Protein of unknown function (DUF1214) - - - 0.0000000000000000000000000000001378 136.0
YYD3_k127_4667143_0 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 285.0
YYD3_k127_4667143_1 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000000000000000001696 222.0
YYD3_k127_4667143_2 Thioredoxin K03671 - - 0.00000000000000000000000000000000001041 138.0
YYD3_k127_4667143_3 COGs COG0607 Rhodanese-related sulfurtransferase - - - 0.0000000000000000000000000000401 121.0
YYD3_k127_4667143_4 - - - - 0.0000000000000002567 80.0
YYD3_k127_4667143_5 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000007913 76.0
YYD3_k127_4667143_6 Protein of unknown function (DUF2892) - - - 0.00000000000003027 75.0
YYD3_k127_4667143_7 Sulfurtransferase - - - 0.00000000006934 64.0
YYD3_k127_466737_0 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 343.0
YYD3_k127_4680075_0 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 475.0
YYD3_k127_4680075_1 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009516 425.0
YYD3_k127_4680075_2 YceI-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009365 263.0
YYD3_k127_4680075_3 HxlR-like helix-turn-helix - - - 0.00000000000000000000000000000000000000000000001378 173.0
YYD3_k127_4680075_4 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000008999 92.0
YYD3_k127_4682670_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1702.0
YYD3_k127_4682670_1 NUDIX domain - - - 0.00000000000000000000000000000000000000000000002181 177.0
YYD3_k127_4682670_2 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000001599 160.0
YYD3_k127_4685191_0 COG3209 Rhs family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 578.0
YYD3_k127_4685191_1 protein of Photorhabdus and some similarities with - - - 0.000000000000000000000000000000000000000000000000000001215 200.0
YYD3_k127_4685453_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 3.933e-317 982.0
YYD3_k127_4685453_1 Legume lectin domain - - - 0.000000000000000000000000000000000000000000000000000000000002061 222.0
YYD3_k127_4685453_2 Peptide-N-glycosidase F, C terminal - - - 0.0000000000000000000000000000000003343 135.0
YYD3_k127_4685453_3 gliding motility-associated C-terminal domain - - - 0.0000000462 64.0
YYD3_k127_4706522_0 Conserved repeat domain - - - 0.000000000000000000000000000000000000000000000004527 192.0
YYD3_k127_4706522_1 Histidine kinase - - - 0.000000000000000000000000000000000001081 146.0
YYD3_k127_4706522_2 surface antigen - - - 0.0000000000000000116 96.0
YYD3_k127_4706522_3 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 0.0002658 53.0
YYD3_k127_471395_0 PFAM TonB-dependent Receptor Plug - - - 0.00000000000000000000000000000000000013 149.0
YYD3_k127_471395_1 Ricin-type beta-trefoil K01197,K01227 GO:0003674,GO:0003824,GO:0004553,GO:0004563,GO:0005488,GO:0005975,GO:0006464,GO:0006517,GO:0006807,GO:0008150,GO:0008152,GO:0009100,GO:0009987,GO:0015929,GO:0016231,GO:0016787,GO:0016798,GO:0019538,GO:0030246,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901135,GO:1901564 3.2.1.35,3.2.1.96 0.00001628 57.0
YYD3_k127_4719874_0 Protein of unknown function (DUF1254) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007452 607.0
YYD3_k127_4721336_0 - - - - 0.000000000000000000000000000000000000000000002065 175.0
YYD3_k127_4721336_1 Protein of unknown function (DUF998) - - - 0.0000005352 53.0
YYD3_k127_4721336_2 Fungalysin metallopeptidase (M36) - - - 0.0000007985 54.0
YYD3_k127_4721778_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 1.157e-281 872.0
YYD3_k127_4721778_1 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007462 421.0
YYD3_k127_4721778_10 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000004811 127.0
YYD3_k127_4721778_11 Preprotein translocase SecG subunit K03075 - - 0.000000000000000000000005438 102.0
YYD3_k127_4721778_12 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000002687 106.0
YYD3_k127_4721778_13 - - - - 0.0000000000000000000005121 100.0
YYD3_k127_4721778_14 small membrane protein - - - 0.000000000000000000004959 102.0
YYD3_k127_4721778_16 - - - - 0.0001017 52.0
YYD3_k127_4721778_2 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008691 350.0
YYD3_k127_4721778_3 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 301.0
YYD3_k127_4721778_4 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000002372 254.0
YYD3_k127_4721778_5 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.000000000000000000000000000000000000000000000000002605 188.0
YYD3_k127_4721778_6 COG1331 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000000000002429 178.0
YYD3_k127_4721778_7 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000000000001117 160.0
YYD3_k127_4721778_8 Protein of unknown function (DUF1573) - - - 0.000000000000000000000000000000000000000002051 162.0
YYD3_k127_4721778_9 Protein of unknown function (DUF420) - - - 0.0000000000000000000000000000000000006916 143.0
YYD3_k127_4729231_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 413.0
YYD3_k127_4729231_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000009295 211.0
YYD3_k127_4729231_2 amidohydrolase K13566 - 3.5.1.3 0.000000000000000000000000000000000000000000001019 168.0
YYD3_k127_4729231_3 COGs COG0791 Cell wall-associated hydrolase (invasion-associated protein) - - - 0.000000000000000000000000000175 123.0
YYD3_k127_4729231_4 SET domain K07117 - - 0.000000000000000000000001447 107.0
YYD3_k127_4730644_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.0 1026.0
YYD3_k127_4734381_0 PFAM Chloroplast import component protein (Tic20) - - - 0.00000000000000000000001015 103.0
YYD3_k127_4734381_1 Carboxypeptidase regulatory-like domain - - - 0.000000006207 68.0
YYD3_k127_4734390_0 Outer membrane protein beta-barrel family - - - 1.321e-249 795.0
YYD3_k127_4734390_1 metallophosphoesterase - - - 9.391e-201 660.0
YYD3_k127_4734390_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003595 278.0
YYD3_k127_4734390_3 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003659 261.0
YYD3_k127_4734390_4 Glutaminase K01425 - 3.5.1.2 0.0000000000000000000000000000000000000000000000000000368 191.0
YYD3_k127_4734390_5 - - - - 0.000000002589 62.0
YYD3_k127_4735056_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.909e-257 803.0
YYD3_k127_4735056_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 2.558e-252 786.0
YYD3_k127_4735056_2 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000422 120.0
YYD3_k127_4735056_3 HEPN domain - - - 0.00000000000006872 76.0
YYD3_k127_473756_0 PKD domain containing protein - - - 2.155e-229 736.0
YYD3_k127_473756_1 Belongs to the SUA5 family K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000003904 182.0
YYD3_k127_473756_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000004677 166.0
YYD3_k127_4745976_0 Ion channel K10716 - - 0.000000000000000000000000000000000000000000000000000000000000004046 222.0
YYD3_k127_4745976_1 Predicted membrane protein (DUF2157) - - - 0.000000000000000000000000000000000000000000000000001235 190.0
YYD3_k127_4745976_2 GDYXXLXY protein - - - 0.0000000000000000000000000000002555 130.0
YYD3_k127_4750379_0 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 476.0
YYD3_k127_4750379_1 Putative MetA-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000001484 155.0
YYD3_k127_4750379_2 PFAM TonB-dependent Receptor K16091 - - 0.000000000000003925 78.0
YYD3_k127_4774342_0 Belongs to the formate--tetrahydrofolate ligase family K01938 GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.3 4.481e-267 833.0
YYD3_k127_4774342_1 domain, Protein K07277,K07278,K21449 - - 0.000000147 58.0
YYD3_k127_4807413_0 Fungalysin metallopeptidase (M36) - - - 2.865e-197 647.0
YYD3_k127_4807413_1 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004028 292.0
YYD3_k127_4807413_2 - - - - 0.0000000000000000000000000000005046 128.0
YYD3_k127_4815862_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001097 278.0
YYD3_k127_4815862_1 Two component regulator propeller - - - 0.00003232 57.0
YYD3_k127_4820679_0 acyl-CoA dehydrogenase - - - 4.709e-230 726.0
YYD3_k127_4820679_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007884 576.0
YYD3_k127_4820679_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007407 457.0
YYD3_k127_4820679_3 domain protein K13735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 316.0
YYD3_k127_4820679_4 MOSC domain - - - 0.000000000000000000000000822 109.0
YYD3_k127_4820679_5 O-antigen ligase like membrane protein K02847 - - 0.0000000000000000007755 95.0
YYD3_k127_4842671_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003623 247.0
YYD3_k127_4842671_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000002682 234.0
YYD3_k127_4853670_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 412.0
YYD3_k127_4853670_1 Cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 293.0
YYD3_k127_4853670_2 - - - - 0.000000000000002506 85.0
YYD3_k127_485902_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 303.0
YYD3_k127_485902_1 - - - - 0.0000000000000000000000000000000000000000000000000001634 188.0
YYD3_k127_485902_2 Lanthionine synthetase C family protein - - - 0.00000000003225 67.0
YYD3_k127_485902_3 - - - - 0.00000005295 57.0
YYD3_k127_485902_4 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0000005215 51.0
YYD3_k127_4871737_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.136e-256 798.0
YYD3_k127_4871737_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 2.62e-232 730.0
YYD3_k127_4871737_2 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 493.0
YYD3_k127_4871737_3 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000006985 142.0
YYD3_k127_4871737_4 PFAM Receptor family ligand binding region - - - 0.0000000000000000001397 102.0
YYD3_k127_4871737_5 isomerase activity - - - 0.00000000004976 74.0
YYD3_k127_4891423_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1386.0
YYD3_k127_4891423_1 ABC transporter K15738 - - 6.437e-291 900.0
YYD3_k127_4891423_10 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000000000000000000000522 106.0
YYD3_k127_4891423_12 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000002372 74.0
YYD3_k127_4891423_13 - - - - 0.0000000000003766 71.0
YYD3_k127_4891423_14 secreted Zn-dependent protease - - - 0.0000000001216 69.0
YYD3_k127_4891423_2 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000572 508.0
YYD3_k127_4891423_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 369.0
YYD3_k127_4891423_4 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002636 267.0
YYD3_k127_4891423_5 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000002517 239.0
YYD3_k127_4891423_6 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000045 183.0
YYD3_k127_4891423_7 Bacterial low temperature requirement A protein (LtrA) - - - 0.00000000000000000000000000000000000000000000005134 184.0
YYD3_k127_4891423_8 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000005054 160.0
YYD3_k127_4891423_9 carbohydrate metabolic process - - - 0.00000000000000000000000000000000002393 146.0
YYD3_k127_4897829_0 PFAM TonB-dependent Receptor Plug - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 434.0
YYD3_k127_4897829_1 Glycosyl hydrolases family 32 K01193 - 3.2.1.26 0.00003292 49.0
YYD3_k127_4907222_0 synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000009475 176.0
YYD3_k127_4907222_1 Redoxin - - - 0.000000000000000000000000000000000000000000000481 185.0
YYD3_k127_4930664_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005265 442.0
YYD3_k127_4930664_1 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006562 259.0
YYD3_k127_4930664_2 acr, cog1399 - - - 0.0000000000000000000000000000000000000000000000000000000006126 204.0
YYD3_k127_4930664_3 Protein of unknown function (DUF2892) - - - 0.000000000000000000000000000000739 126.0
YYD3_k127_4930664_4 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.000000000000000000000000002759 112.0
YYD3_k127_4930771_0 Two component regulator three Y - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009005 415.0
YYD3_k127_4930771_1 Fibronectin type 3 domain - - - 0.0000000000000000000000005575 112.0
YYD3_k127_4930771_2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000001187 112.0
YYD3_k127_4930771_3 Hep Hag repeat protein K21449 - - 0.00000003676 63.0
YYD3_k127_4935791_0 - - - - 0.000000000000000000000000000000000000000000000005114 179.0
YYD3_k127_4935791_1 Surface antigen - - - 0.00000000000000004579 88.0
YYD3_k127_4954877_0 glycosyl transferase - - - 9.165e-220 688.0
YYD3_k127_4954877_1 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 593.0
YYD3_k127_4954877_10 AhpC/TSA family - - - 0.0000000000000000000000000002316 120.0
YYD3_k127_4954877_11 - - - - 0.0000000000000000000000004721 111.0
YYD3_k127_4954877_12 Protein of unknown function (DUF3606) - - - 0.00004269 48.0
YYD3_k127_4954877_2 Peptidase M16 inactive domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 588.0
YYD3_k127_4954877_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005479 554.0
YYD3_k127_4954877_4 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 380.0
YYD3_k127_4954877_5 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 371.0
YYD3_k127_4954877_6 Asparaginase, N-terminal K01424 - 3.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000668 252.0
YYD3_k127_4954877_7 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000000000000000000007607 190.0
YYD3_k127_4954877_8 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000004186 194.0
YYD3_k127_4954877_9 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000002527 145.0
YYD3_k127_4962912_0 Tetratricopeptide repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 557.0
YYD3_k127_4962912_1 protein CHP03519, membrane, Bacteroidetes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006469 377.0
YYD3_k127_4962912_2 D,D-heptose 1,7-bisphosphate phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001126 235.0
YYD3_k127_4962912_3 peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000001462 210.0
YYD3_k127_4962912_4 PFAM NAD dependent epimerase dehydratase family K07071 - - 0.0000000000000000000000000000000000000000000000000003442 192.0
YYD3_k127_4962912_5 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000009077 135.0
YYD3_k127_4962912_6 - - - - 0.000000000000000000000000000000002571 139.0
YYD3_k127_4962912_7 Acetyl propionyl-CoA carboxylase alpha subunit K01960 - 6.4.1.1 0.0000000000000000000000002136 111.0
YYD3_k127_4966888_0 oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 411.0
YYD3_k127_4966899_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006609 266.0
YYD3_k127_4966899_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000000002647 207.0
YYD3_k127_4980509_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 8.302e-204 646.0
YYD3_k127_4980509_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008385 275.0
YYD3_k127_4980509_2 PFAM Tetratricopeptide - - - 0.0000000000000000000000000000000000000000000000000000002552 214.0
YYD3_k127_4980509_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000000000006889 125.0
YYD3_k127_4980509_4 Domain of unknown function (DUF4292) - - - 0.0000000000000002125 89.0
YYD3_k127_4980509_5 Peptidase, M23 - - - 0.000000000000002558 86.0
YYD3_k127_4981800_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008947 438.0
YYD3_k127_4981800_1 Nucleotidyltransferase domain K07075 - - 0.0000000000000000000000000000000001072 134.0
YYD3_k127_4981800_2 Protein of unknown function DUF86 - - - 0.000000000000000000000000004073 113.0
YYD3_k127_4983681_0 Belongs to the BshC family K22136 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009076 456.0
YYD3_k127_4983681_1 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 447.0
YYD3_k127_4983681_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 394.0
YYD3_k127_4983681_3 BNR Asp-box repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001892 282.0
YYD3_k127_4983713_0 SprB repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 515.0
YYD3_k127_4983713_1 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003257 270.0
YYD3_k127_4983713_2 regulator of cell autolysis - - - 0.00000000000000000000000000000000000000000000000000000000006154 214.0
YYD3_k127_4985923_0 ATPase (AAA K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008362 558.0
YYD3_k127_4985923_1 SPTR CHU large protein - - - 0.0000000000003865 79.0
YYD3_k127_4985964_0 peptidase M42 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 522.0
YYD3_k127_4985964_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006895 337.0
YYD3_k127_4985964_2 deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 329.0
YYD3_k127_4985964_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762,K13421 - 2.4.2.10,4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000704 231.0
YYD3_k127_4985964_4 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000006533 221.0
YYD3_k127_4985964_5 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000006493 202.0
YYD3_k127_4985964_6 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000000000000000000000000003224 168.0
YYD3_k127_4985964_7 PFAM UbiA prenyltransferase family - - - 0.0000000000000000000000001295 117.0
YYD3_k127_4985964_8 - - - - 0.00000000000000005309 83.0
YYD3_k127_4985964_9 Endoribonuclease L-PSP - - - 0.0000006155 51.0
YYD3_k127_4988753_0 Sulfatase K01130 - 3.1.6.1 6.255e-265 822.0
YYD3_k127_4988753_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961,K01965,K01968 - 6.3.4.14,6.4.1.2,6.4.1.3,6.4.1.4 0.000000000000000000000000000000000000000000000000000000000007208 209.0
YYD3_k127_4988753_2 Biotin carboxyl carrier protein K01960 - 6.4.1.1 0.0000000000000000000000000000000000000000000000004615 180.0
YYD3_k127_4988753_3 Uncharacterized protein family, UPF0114 - - - 0.000000003938 64.0
YYD3_k127_5005967_0 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 7.338e-204 643.0
YYD3_k127_5005967_1 PFAM Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 519.0
YYD3_k127_5005967_2 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009125 424.0
YYD3_k127_5005967_3 Succinate dehydrogenase fumarate reductase Fe-S protein subunit K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005345 374.0
YYD3_k127_5005967_4 Amidohydrolase family - - - 0.00000000000006329 73.0
YYD3_k127_5008846_0 Carboxypeptidase regulatory-like domain - - - 8.179e-266 841.0
YYD3_k127_5008846_1 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 584.0
YYD3_k127_5008846_2 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 483.0
YYD3_k127_5008846_3 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005154 371.0
YYD3_k127_5008846_4 Permease, YjgP YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 365.0
YYD3_k127_5008846_5 Domain of unknown function (DUF4249) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 316.0
YYD3_k127_5008846_6 PFAM Methyltransferase type 12 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 297.0
YYD3_k127_5008846_7 NAD(P)H-binding - - - 0.00000000000000000000000000000000000000000000001074 179.0
YYD3_k127_5008846_8 TIGRFAM Gliding motility-associated protein, GldC - - - 0.000000000000000000000004797 105.0
YYD3_k127_5008846_9 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.000004761 53.0
YYD3_k127_5021550_0 Saccharopine dehydrogenase C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 452.0
YYD3_k127_5021550_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004215 416.0
YYD3_k127_5021550_2 Hydroxymethylglutaryl-CoA lyase K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 371.0
YYD3_k127_5021550_3 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000000000000000000006694 179.0
YYD3_k127_5021550_4 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.0000000000000000000000002319 109.0
YYD3_k127_5021550_5 Hydroxymethylglutaryl-CoA lyase K01640 - 4.1.3.4 0.000000002566 59.0
YYD3_k127_5021550_6 Protein of unknown function (DUF4199) - - - 0.000001052 57.0
YYD3_k127_5037180_0 Belongs to the glycosyl hydrolase 13 family - - - 7.025e-221 705.0
YYD3_k127_5037180_1 branched-chain-amino-acid transaminase activity K00824,K00826 - 2.6.1.21,2.6.1.42 0.000000000000000000000000000000000000000000000000000000000524 212.0
YYD3_k127_5037180_2 - - - - 0.000000001356 59.0
YYD3_k127_5048716_0 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008162 382.0
YYD3_k127_5048716_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000002348 223.0
YYD3_k127_5048716_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000000005622 186.0
YYD3_k127_5066277_0 Belongs to the peptidase S8 family K13276 GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 530.0
YYD3_k127_5066277_1 glyoxalase - - - 0.00000000000000000000000000000000000000000000000000646 183.0
YYD3_k127_5066277_2 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000002488 178.0
YYD3_k127_5066277_3 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000001324 156.0
YYD3_k127_5066277_4 - - - - 0.000000000000000000001393 101.0
YYD3_k127_5066277_5 Protein of unknown function (DUF3500) - - - 0.00000000338 64.0
YYD3_k127_5075125_0 Beta-glucanase Beta-glucan synthetase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 431.0
YYD3_k127_5075125_1 beta-lactamase K17838,K22351 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004202 292.0
YYD3_k127_5075125_2 alpha beta K06889 - - 0.00000000000000000000000000000000000000000000000008951 180.0
YYD3_k127_5075125_3 - - - - 0.000000000000000000000000000000000000131 146.0
YYD3_k127_5084481_0 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000686 589.0
YYD3_k127_5084481_1 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005926 353.0
YYD3_k127_5084481_2 PDZ DHR GLGF domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000658 299.0
YYD3_k127_5084481_3 flagellar motor protein MotB - - - 0.00000000000000000000000000000000000000000000003105 185.0
YYD3_k127_5084481_4 Pfam Phospholipase Carboxylesterase - - - 0.000000000000000000000000000000000000000000796 165.0
YYD3_k127_5084481_5 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000005819 138.0
YYD3_k127_5084481_6 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000000000000001333 131.0
YYD3_k127_5084481_7 - - - - 0.000000000000000000000000006069 121.0
YYD3_k127_5084481_8 Superfamily I DNA and RNA K10742 - 3.6.4.12 0.00000000001841 73.0
YYD3_k127_5084481_9 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00003453 46.0
YYD3_k127_5086709_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 401.0
YYD3_k127_5086709_1 COG1055 Na H antiporter NhaD and related arsenite - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 327.0
YYD3_k127_5088603_0 hemolysin activation secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 602.0
YYD3_k127_5089456_0 Bacterial PH domain K08981 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001467 264.0
YYD3_k127_5089456_1 Bacterial PH domain K09167 - - 0.000000000000000000000006017 107.0
YYD3_k127_5104202_0 YceI-like domain - - - 0.0000000000000000000000000000000000000000000000000000000001815 207.0
YYD3_k127_5104202_1 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000000004608 196.0
YYD3_k127_5104202_2 transcriptional regulator - - - 0.00000000000000000000000000000000000004072 146.0
YYD3_k127_5104202_3 - - - - 0.000000000000000000000001119 109.0
YYD3_k127_5104202_4 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000001251 100.0
YYD3_k127_5104202_5 - - - - 0.0000000000000000003835 89.0
YYD3_k127_5104202_6 Thioredoxin K01829 - 5.3.4.1 0.00000000000000006393 87.0
YYD3_k127_5104263_0 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 494.0
YYD3_k127_5104263_1 TonB-dependent receptor - - - 0.00000000000000000000000000000003881 128.0
YYD3_k127_5104263_2 AhpC/TSA family - - - 0.000000000000000007335 91.0
YYD3_k127_5104263_3 TonB-dependent receptor - - - 0.0000000000004221 74.0
YYD3_k127_5104263_4 - - - - 0.00005575 51.0
YYD3_k127_5105978_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 1.692e-305 952.0
YYD3_k127_5105978_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001982 228.0
YYD3_k127_5105978_2 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000186 188.0
YYD3_k127_5105978_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000001032 96.0
YYD3_k127_5111876_0 Belongs to the arginase family K01479 - 3.5.3.8 0.0000000000000000000000000000000000000003221 162.0
YYD3_k127_5111876_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000003192 133.0
YYD3_k127_5111876_2 OmpA MotB domain protein K03286 - - 0.000000000000004827 82.0
YYD3_k127_5112967_0 TonB dependent receptor - - - 2.632e-231 751.0
YYD3_k127_5112967_1 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 348.0
YYD3_k127_5112967_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000004865 140.0
YYD3_k127_5116273_0 Motility related/secretion protein - - - 0.0 2167.0
YYD3_k127_5116273_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000007191 168.0
YYD3_k127_5116273_2 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000001034 114.0
YYD3_k127_5116273_3 beta-galactosidase activity K01190,K01219,K12308 - 3.2.1.23,3.2.1.81 0.000000000002177 68.0
YYD3_k127_5140650_0 alpha-2-macroglobulin domain protein K06894 - - 4.387e-220 707.0
YYD3_k127_5143475_0 amidohydrolase - - - 2.253e-226 713.0
YYD3_k127_5143475_1 Patatin-like phospholipase - - - 0.00000000000000000002488 99.0
YYD3_k127_5143475_2 Opacity protein - - - 0.0000007538 59.0
YYD3_k127_5145844_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 1.117e-221 692.0
YYD3_k127_5145844_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 519.0
YYD3_k127_5145844_2 Phosphohydrolase - - - 0.00000000000000000000000000000000000000000006513 167.0
YYD3_k127_5145844_3 AsmA family - - - 0.00000000000000000000000000008884 120.0
YYD3_k127_5148135_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 464.0
YYD3_k127_5148135_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 398.0
YYD3_k127_5148135_2 YeeE YedE family K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000003484 228.0
YYD3_k127_5148135_3 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000008372 173.0
YYD3_k127_5149306_0 domain, Protein K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000002453 263.0
YYD3_k127_5149306_1 response regulator, receiver - - - 0.00000000000000000000000000000000000006379 151.0
YYD3_k127_5149306_2 Pasta domain K01921,K08884,K12132 - 2.7.11.1,6.3.2.4 0.0000000000000000000000002858 116.0
YYD3_k127_5149306_3 Rhodanese Homology Domain - - - 0.00000000000000000000004721 101.0
YYD3_k127_51517_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007243 437.0
YYD3_k127_51517_1 permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 400.0
YYD3_k127_51517_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 391.0
YYD3_k127_51517_3 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001309 280.0
YYD3_k127_51517_4 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000001622 189.0
YYD3_k127_5158147_0 Fungalysin metallopeptidase (M36) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 608.0
YYD3_k127_515951_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 422.0
YYD3_k127_515951_1 COGs COG5616 integral membrane protein - - - 0.00000000000000000000000000000000000005842 145.0
YYD3_k127_515951_2 Transglycosylase associated protein - - - 0.000000000000000000000000000001192 122.0
YYD3_k127_515951_3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.000000005189 67.0
YYD3_k127_5161358_0 ABC transporter K18889 - - 1.926e-223 708.0
YYD3_k127_5161358_1 SMART PUR-alpha beta gamma DNA RNA-binding - - - 0.00000000000000000000000000000000000000004069 154.0
YYD3_k127_5161358_2 rRNA binding - - - 0.0000000000000000001231 93.0
YYD3_k127_5161358_3 Di-haem oxidoreductase, putative peroxidase - - - 0.0000004463 52.0
YYD3_k127_5173340_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007914 468.0
YYD3_k127_5173340_1 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006877 255.0
YYD3_k127_5173340_2 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005223 243.0
YYD3_k127_5173340_3 - - - - 0.00000009015 61.0
YYD3_k127_5176140_0 peptidase S9 prolyl oligopeptidase active site domain protein - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 9.698e-275 858.0
YYD3_k127_5176140_1 Major Facilitator K16211 - - 0.00000000000000000000000000000000000000000007939 160.0
YYD3_k127_5176140_2 Pfam ORF6N domain - - - 0.000000387 56.0
YYD3_k127_5177493_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007608 349.0
YYD3_k127_5177493_1 SPTR Efflux transporter, RND family, MFP subunit K02005 - - 0.00000000000000000000000000000000000000005406 156.0
YYD3_k127_5179986_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 462.0
YYD3_k127_5179986_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 417.0
YYD3_k127_51844_0 Heat shock 70 kDa protein K04043 - - 1.275e-319 987.0
YYD3_k127_51844_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000004804 224.0
YYD3_k127_51844_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000005289 192.0
YYD3_k127_51844_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000008221 93.0
YYD3_k127_5194340_0 ASPIC and UnbV - - - 4.534e-229 732.0
YYD3_k127_5194340_1 tRNA wobble adenosine to inosine editing - - - 0.0000000000000000000000002097 105.0
YYD3_k127_5206031_0 Sulfotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002737 263.0
YYD3_k127_5206031_1 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000001621 146.0
YYD3_k127_5206031_2 PFAM Rhodanese-like domain - - - 0.0000000000000000000000000001181 120.0
YYD3_k127_5206031_3 VIT family - - - 0.00000000000000000003825 90.0
YYD3_k127_5206031_4 Belongs to the Dps family K04047 - - 0.0000001179 53.0
YYD3_k127_5207864_0 - - - - 6.844e-204 642.0
YYD3_k127_5207864_1 oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 581.0
YYD3_k127_5207864_2 transferase activity, transferring glycosyl groups K00754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008251 259.0
YYD3_k127_5207864_3 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.0000000000000000002762 88.0
YYD3_k127_5207864_4 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.0007787 50.0
YYD3_k127_5208495_0 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 522.0
YYD3_k127_5210166_0 Arginine deiminase K01478 - 3.5.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008695 542.0
YYD3_k127_5210166_1 Phage shock protein A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 423.0
YYD3_k127_5210166_2 ribonuclease BN K07058 - - 0.000000000000000000000000000000000000000000000000000000000000003798 228.0
YYD3_k127_5210166_3 thioesterase K07107 - - 0.0000000000000000000000000000000000000000002966 162.0
YYD3_k127_5210166_4 - - - - 0.000000000000000000000000000000000000000001906 164.0
YYD3_k127_5211153_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 5.04e-322 1004.0
YYD3_k127_5211153_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 296.0
YYD3_k127_5211153_2 PFAM PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001434 257.0
YYD3_k127_5211153_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000625 217.0
YYD3_k127_5211153_4 IMG reference gene - - - 0.0000000000000000000000000000000000000000000000000000001494 224.0
YYD3_k127_5216564_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 2.426e-199 629.0
YYD3_k127_5216564_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775,K01929 - 5.1.1.1,6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 602.0
YYD3_k127_5216564_2 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007827 402.0
YYD3_k127_5216564_3 O-Antigen ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009444 355.0
YYD3_k127_5216564_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000001634 218.0
YYD3_k127_5216564_5 Protein of unknown function (DUF2480) - - - 0.000000000000000000000000000000000000000000000000000000000002209 213.0
YYD3_k127_5216564_7 - - - - 0.00000004149 64.0
YYD3_k127_5239803_0 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 308.0
YYD3_k127_5239803_1 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000000000000000000008123 169.0
YYD3_k127_5239803_2 DDE domain - - - 0.0000000000000000000000000000000000000000005024 170.0
YYD3_k127_5239803_3 Transposase - - - 0.0000000000000000002296 93.0
YYD3_k127_5239803_4 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0002152 45.0
YYD3_k127_5258009_0 Alpha-L-rhamnosidase N-terminal domain K05989 - 3.2.1.40 4.809e-217 686.0
YYD3_k127_5263393_0 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 372.0
YYD3_k127_5263393_1 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000121 273.0
YYD3_k127_5263393_2 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000005378 210.0
YYD3_k127_5263393_3 Tyrosine recombinase XerC K04763 - - 0.000000000002866 66.0
YYD3_k127_5269730_0 alpha amylase, catalytic region - - - 7.737e-210 663.0
YYD3_k127_5269730_1 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000001925 206.0
YYD3_k127_5277600_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000009616 158.0
YYD3_k127_5277600_1 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000000000000000000000000000005626 145.0
YYD3_k127_5277600_2 Na dependent nucleoside transporter K03317 - - 0.00000000000827 66.0
YYD3_k127_5282656_0 ADP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 503.0
YYD3_k127_5282656_1 Signal transduction response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 350.0
YYD3_k127_5282656_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003826 239.0
YYD3_k127_5296602_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 2.313e-212 666.0
YYD3_k127_5296602_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009305 555.0
YYD3_k127_5299806_0 Serine protease, subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 338.0
YYD3_k127_5299806_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003164 241.0
YYD3_k127_5299806_2 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000003961 118.0
YYD3_k127_5299806_3 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000000000000007405 115.0
YYD3_k127_5299806_5 - - - - 0.00004872 46.0
YYD3_k127_5319170_0 alanine symporter K03310 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 388.0
YYD3_k127_5319170_1 Sodium:alanine symporter family K03310 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009251 277.0
YYD3_k127_5319170_2 Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001405 239.0
YYD3_k127_5319170_3 amino acid K03294 - - 0.0000000001699 62.0
YYD3_k127_5322693_0 asparagine synthase K01953 - 6.3.5.4 6.655e-283 872.0
YYD3_k127_5322693_1 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 6.016e-202 639.0
YYD3_k127_533562_0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006515 314.0
YYD3_k127_533562_1 alpha-2-macroglobulin domain protein K06894 - - 0.000000000000000000000000000000000000000000000000000000000000000441 237.0
YYD3_k127_533562_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000183 78.0
YYD3_k127_5335702_0 membrane protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 377.0
YYD3_k127_5335702_1 HAD-hyrolase-like K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000004236 172.0
YYD3_k127_5335702_2 D-alanyl-D-alanine carboxypeptidase - - - 0.0000000000000000000000000000000000000008086 158.0
YYD3_k127_5335702_4 Redoxin - - - 0.0000000000000001481 79.0
YYD3_k127_5335702_5 COG NOG17292 non supervised orthologous group - - - 0.00000000000006836 74.0
YYD3_k127_5337368_0 of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000001035 268.0
YYD3_k127_5337368_1 translation initiation factor activity - - - 0.000000000000000000000000005088 119.0
YYD3_k127_5337368_2 - - - - 0.0000000000000000000003138 98.0
YYD3_k127_5339865_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 459.0
YYD3_k127_5339865_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368 332.0
YYD3_k127_5339865_2 SprB repeat - - - 0.000001682 59.0
YYD3_k127_5339865_3 CotH kinase protein - - - 0.000005702 51.0
YYD3_k127_5339865_4 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.0007844 42.0
YYD3_k127_5346749_0 Mate efflux family protein K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 546.0
YYD3_k127_5374221_0 methylmalonyl-CoA mutase N-terminal domain K01847 - 5.4.99.2 3.059e-312 968.0
YYD3_k127_5374221_1 Peptidase M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 396.0
YYD3_k127_5374221_2 peptidase M1 K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000838 387.0
YYD3_k127_5374221_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 295.0
YYD3_k127_5374221_4 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000162 256.0
YYD3_k127_5374221_5 Protein of unknown function, DUF255 - - - 0.0002688 47.0
YYD3_k127_538844_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000411 606.0
YYD3_k127_538844_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000003001 214.0
YYD3_k127_538844_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000000000000000001556 185.0
YYD3_k127_538844_3 TonB-dependent receptor plug domain - - - 0.0000000000000000000000000000000000000000000001815 175.0
YYD3_k127_538844_4 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000007428 155.0
YYD3_k127_538844_5 heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.00000000000002536 76.0
YYD3_k127_5403049_0 Two component regulator propeller - - - 1.613e-239 775.0
YYD3_k127_5403049_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000004814 187.0
YYD3_k127_5419776_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 9.021e-276 857.0
YYD3_k127_5419776_1 formate dehydrogenase (NAD+) activity K00123,K05299 - 1.17.1.10,1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 293.0
YYD3_k127_5419776_2 FdhD/NarQ family K02379 - - 0.0000000000000000000000000000000005819 133.0
YYD3_k127_5432684_0 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 420.0
YYD3_k127_5432684_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000003364 220.0
YYD3_k127_5432684_2 Y_Y_Y domain - - - 0.0000000003275 70.0
YYD3_k127_543468_0 Amidohydrolase family - - - 1.62e-251 781.0
YYD3_k127_543468_1 PFAM peptidase T2 asparaginase 2 K01444,K13051 - 3.4.19.5,3.5.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 413.0
YYD3_k127_543468_2 TonB dependent receptor - - - 0.000000000000008867 78.0
YYD3_k127_5436330_0 nitric oxide reductase K04561 - 1.7.2.5 0.0 1071.0
YYD3_k127_5436330_1 exo-alpha-(2->6)-sialidase activity - - - 1.007e-217 686.0
YYD3_k127_5436330_2 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 446.0
YYD3_k127_5436330_3 ABC transporter K15738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006543 289.0
YYD3_k127_5437967_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 3.809e-203 659.0
YYD3_k127_5449125_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 421.0
YYD3_k127_5449125_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000003029 60.0
YYD3_k127_5450380_0 Belongs to the PdxA family K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 423.0
YYD3_k127_5450380_1 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007803 338.0
YYD3_k127_5450380_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003633 275.0
YYD3_k127_5450380_3 PKD domain - - - 0.00000000000000000000000000000000000000000001013 178.0
YYD3_k127_5450380_4 COG1705 Muramidase (flagellum-specific) - - - 0.000000000000000000000000000000000000000001287 164.0
YYD3_k127_5450380_5 Cytochrome c - - - 0.000000000000000000000000188 110.0
YYD3_k127_5456186_0 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006492 338.0
YYD3_k127_5456186_1 protein CHP03519, membrane, Bacteroidetes - - - 0.00000000000000000000000000000000000000000000000000000000000000000198 239.0
YYD3_k127_5456186_2 PKD domain containing protein - - - 0.00000000005825 64.0
YYD3_k127_5460887_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006159 578.0
YYD3_k127_5460887_1 self proteolysis K03404,K07114,K15125,K20276 - 6.6.1.1 0.0000000000000000000000000000000000000000709 164.0
YYD3_k127_5463113_0 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 397.0
YYD3_k127_5463113_1 - - - - 0.000000000000000000000001627 109.0
YYD3_k127_5463113_2 - - - - 0.000000000054 73.0
YYD3_k127_5465313_0 ADP binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004116 483.0
YYD3_k127_5465313_1 Mechanosensitive ion channel K05802 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005837 259.0
YYD3_k127_5465313_2 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000003566 229.0
YYD3_k127_5465313_3 Ketosteroid isomerase-related protein - - - 0.00000000000000000000000000000000000000000087 164.0
YYD3_k127_5465313_4 acetyltransferase - - - 0.00000000000000000000000000000000000001247 149.0
YYD3_k127_5465313_5 - - - - 0.0000000000000000000000000000000001416 138.0
YYD3_k127_5465313_6 GCN5-related N-acetyl-transferase K06975 - - 0.00000000000000000000000001446 111.0
YYD3_k127_5465313_7 transcriptional regulator K07729 - - 0.00000000000000000000006356 100.0
YYD3_k127_5465313_9 Protein of unknown function (DUF3667) - - - 0.0000000000000000000303 100.0
YYD3_k127_5467344_0 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 561.0
YYD3_k127_5467344_1 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 315.0
YYD3_k127_5467344_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000005289 55.0
YYD3_k127_547250_0 Domain of unknown function (DUF5122) beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000006807 249.0
YYD3_k127_547250_1 - - - - 0.0000000000000000000000000000000000000000000008827 169.0
YYD3_k127_5473001_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 3.946e-293 912.0
YYD3_k127_5473001_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 404.0
YYD3_k127_5473001_2 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000001147 113.0
YYD3_k127_5474521_0 PFAM Starch synthase, catalytic domain K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 342.0
YYD3_k127_5474521_1 Male sterility protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000006193 182.0
YYD3_k127_5474521_2 Domain of unknown function (DUF4270) - - - 0.000000000000000003196 93.0
YYD3_k127_5487509_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K08314 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 372.0
YYD3_k127_5487509_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009183 284.0
YYD3_k127_5487509_2 Pseudouridine synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000000000000000005996 227.0
YYD3_k127_5487509_3 COG1807 4-amino-4-deoxy-L-arabinose transferase and related - - - 0.0000000000000000000001366 108.0
YYD3_k127_5494147_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000001028 169.0
YYD3_k127_5494147_1 Peptidase S9 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000002137 161.0
YYD3_k127_5494147_2 - - - - 0.00000000000000000000000000002026 123.0
YYD3_k127_5502547_0 TIGRFAM formate dehydrogenase, alpha subunit, archaeal-type K00123,K18332 - 1.12.1.3,1.17.1.9 0.0 1262.0
YYD3_k127_5502547_1 Molybdenum cofactor biosynthesis protein K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 416.0
YYD3_k127_5502547_2 Sterol desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 334.0
YYD3_k127_5504139_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 287.0
YYD3_k127_5504139_1 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000000000000000001435 175.0
YYD3_k127_5504139_2 Protein of unknown function (DUF2851) - - - 0.000000000000000000000000000000006094 130.0
YYD3_k127_5515743_0 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 558.0
YYD3_k127_5515743_1 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000004392 76.0
YYD3_k127_5515743_2 - - - - 0.000000001268 64.0
YYD3_k127_5542980_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07239 - - 0.0 1435.0
YYD3_k127_5555853_0 Pyruvate phosphate dikinase K01007 - 2.7.9.2 3.147e-321 1014.0
YYD3_k127_5555853_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 496.0
YYD3_k127_5555853_2 TLC ATP/ADP transporter K03301 - - 0.00000000000000000000000000000000000000000000000000000000000004948 230.0
YYD3_k127_5558024_0 luxR family - - - 8.541e-214 677.0
YYD3_k127_5558024_1 - - - - 0.000000009356 63.0
YYD3_k127_5563108_0 Glycogen debranching enzyme - - - 1.468e-243 762.0
YYD3_k127_5563108_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002854 283.0
YYD3_k127_5565497_0 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005362 287.0
YYD3_k127_5565497_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000002058 115.0
YYD3_k127_5607661_0 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 358.0
YYD3_k127_5607661_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000000007568 187.0
YYD3_k127_5607661_2 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000006067 122.0
YYD3_k127_5607661_3 Psort location Cytoplasmic, score 8.87 - - - 0.0002743 47.0
YYD3_k127_561092_0 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 363.0
YYD3_k127_561092_1 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000297 202.0
YYD3_k127_561092_2 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000005666 186.0
YYD3_k127_5617528_0 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 1.872e-241 773.0
YYD3_k127_5617528_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 479.0
YYD3_k127_5617528_2 amidohydrolase K20810 - 3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 439.0
YYD3_k127_5617528_3 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 437.0
YYD3_k127_5617528_4 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 407.0
YYD3_k127_5617528_5 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 374.0
YYD3_k127_5617528_6 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000082 269.0
YYD3_k127_5617528_7 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000008162 235.0
YYD3_k127_5617528_8 chlorophyll binding - - - 0.000000000000000000000000000000000004202 145.0
YYD3_k127_5617528_9 Antibiotic biosynthesis monooxygenase - - - 0.000000000000004375 82.0
YYD3_k127_5622039_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006951 531.0
YYD3_k127_5622039_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 516.0
YYD3_k127_5622039_2 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 293.0
YYD3_k127_5622039_3 Excinuclease ABC subunit B - - - 0.00000000000000000000000000000000000000000166 167.0
YYD3_k127_5634082_0 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004153 266.0
YYD3_k127_5634082_1 COGs COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase) - - - 0.0000000000000000005369 94.0
YYD3_k127_5639222_0 Sulfate permease family K03321 - - 3.547e-206 653.0
YYD3_k127_5639222_1 Reversible hydration of carbon dioxide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 320.0
YYD3_k127_5639222_2 Protein of unknown function (DUF2490) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 302.0
YYD3_k127_5639222_3 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001758 277.0
YYD3_k127_5639222_4 CHAD domain - - - 0.00000000000000000000000000000000001358 147.0
YYD3_k127_5649534_0 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) K00382 - 1.8.1.4 1.577e-220 691.0
YYD3_k127_5649534_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 344.0
YYD3_k127_5649534_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 335.0
YYD3_k127_5649534_3 PFAM TonB-dependent Receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 292.0
YYD3_k127_5649534_4 secondary active sulfate transmembrane transporter activity - - - 0.000000000000000000000000000134 124.0
YYD3_k127_5649534_5 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000000000000000006067 99.0
YYD3_k127_5649534_6 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.000000001762 58.0
YYD3_k127_5653102_0 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000003915 241.0
YYD3_k127_5653102_1 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000007615 115.0
YYD3_k127_5655264_0 PKD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 538.0
YYD3_k127_5671138_0 Phosphoesterase PA-phosphatase related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 534.0
YYD3_k127_5671138_1 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 312.0
YYD3_k127_5671138_2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009878 277.0
YYD3_k127_5671138_3 PFAM Squalene phytoene synthase - - - 0.0000000000000000000000000000000000000000000000000000000000002324 215.0
YYD3_k127_5671138_4 Beta-carotene hydroxylase K15746 - 1.14.15.24 0.0000000000000000000000000000000000000000000000000000004053 197.0
YYD3_k127_5671138_5 TIGRFAM lycopene cyclase domain - - - 0.0000000000000000000000000000000000000000000000000000006964 203.0
YYD3_k127_5671853_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 4.143e-256 802.0
YYD3_k127_5671853_1 PFAM Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 308.0
YYD3_k127_5675414_0 PFAM Activator of Hsp90 ATPase - - - 0.00000000000000000000000000000000000000000000000000000000007181 212.0
YYD3_k127_5675414_2 PFAM 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000002661 138.0
YYD3_k127_5675414_3 Lipase (class 3) - - - 0.0000000000000000000000000000007873 126.0
YYD3_k127_5675414_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000001879 56.0
YYD3_k127_5683320_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005895 481.0
YYD3_k127_5683320_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 385.0
YYD3_k127_5683320_2 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.0000000000000000000000000000000000007555 141.0
YYD3_k127_5683320_3 Ribosomal RNA adenine dimethylase - - - 0.000000000000000000000005079 109.0
YYD3_k127_5683320_4 - - - - 0.00000000000114 74.0
YYD3_k127_5689432_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 7.992e-288 894.0
YYD3_k127_5689432_1 Domain of unknown function (DUF4290) - - - 0.000000000000000000000000000000000000000000001227 173.0
YYD3_k127_5689432_2 Domain of unknown function (DUF4270) - - - 0.00000000000001709 82.0
YYD3_k127_5694694_0 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 315.0
YYD3_k127_5694782_0 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008113 250.0
YYD3_k127_5694782_1 cephalosporin hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000321 222.0
YYD3_k127_5694782_2 Putative rhamnosyl transferase - - - 0.0000000000000000000000000000002417 134.0
YYD3_k127_5694782_3 ATPases associated with a variety of cellular activities K01990,K09689,K09691 - 3.6.3.38 0.0000001354 54.0
YYD3_k127_5703839_0 Belongs to the glutaminase family K01425 - 3.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008428 278.0
YYD3_k127_5703839_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000005994 247.0
YYD3_k127_5703839_2 Chaperone of endosialidase - - - 0.0000000000000000000000585 112.0
YYD3_k127_5703839_3 Chaperone of endosialidase - - - 0.0000000000000007413 90.0
YYD3_k127_5704525_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 1.089e-211 680.0
YYD3_k127_5704525_1 PFAM TonB-dependent Receptor Plug - - - 0.000000000000000000000000000001047 124.0
YYD3_k127_5709276_0 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 449.0
YYD3_k127_5709276_1 COG1233 Phytoene dehydrogenase and related K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 387.0
YYD3_k127_5709276_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000033 225.0
YYD3_k127_5709276_3 Protein of unknown function (DUF1304) K08987 - - 0.000000000000000000000000000000000000000000000000177 179.0
YYD3_k127_5709276_4 COG0076 Glutamate decarboxylase and related PLP-dependent proteins - - - 0.00000000000000000000000007575 110.0
YYD3_k127_5722337_0 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 420.0
YYD3_k127_5722337_1 Polyphosphate nucleotide phosphotransferase, PPK2 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005627 308.0
YYD3_k127_5722337_2 signal peptide peptidase SppA, 67K type K04773 - - 0.0000000000000000000000000000000000000000000000000000000000006722 222.0
YYD3_k127_5722337_3 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000001146 170.0
YYD3_k127_5736659_0 Belongs to the peptidase S8 family K20755 - 3.4.21.121 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 584.0
YYD3_k127_5736659_1 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000001877 91.0
YYD3_k127_5744537_0 COGs COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009155 327.0
YYD3_k127_5754146_0 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000005935 145.0
YYD3_k127_5754146_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000001685 120.0
YYD3_k127_5754146_2 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000002719 118.0
YYD3_k127_5754146_3 IMP dehydrogenase activity K04767,K07182 - - 0.0000000000000000000000009624 109.0
YYD3_k127_5761553_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009083 511.0
YYD3_k127_5761553_2 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000001108 206.0
YYD3_k127_576670_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 1.819e-201 634.0
YYD3_k127_576670_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 4.513e-196 620.0
YYD3_k127_576670_10 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001391 187.0
YYD3_k127_576670_11 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000009265 163.0
YYD3_k127_576670_12 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.00000000000000000000000000000000001062 136.0
YYD3_k127_576670_13 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000001004 76.0
YYD3_k127_576670_14 Septum formation inhibitor - - - 0.000000000000239 75.0
YYD3_k127_576670_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 545.0
YYD3_k127_576670_3 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 491.0
YYD3_k127_576670_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 464.0
YYD3_k127_576670_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 401.0
YYD3_k127_576670_6 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005315 347.0
YYD3_k127_576670_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 315.0
YYD3_k127_576670_8 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000007594 200.0
YYD3_k127_576670_9 ribosomal protein l17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001235 190.0
YYD3_k127_5769774_0 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 8.067e-211 661.0
YYD3_k127_5769774_1 Biogenesis protein K09792 - - 0.0000000000000000000000000000000000000000000000000000004727 201.0
YYD3_k127_5769774_2 FixH - - - 0.000000000000004682 79.0
YYD3_k127_5780421_0 beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000371 265.0
YYD3_k127_5780421_1 cellulase activity - - - 0.000000000000000000000000000000000000000002801 173.0
YYD3_k127_5780421_2 cellulose binding K09483 - 4.2.1.118 0.00000000000000000000000000000000000008187 158.0
YYD3_k127_5784891_0 catalase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 589.0
YYD3_k127_5784891_1 catalase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005664 486.0
YYD3_k127_5784891_2 fatty acid desaturase - - - 0.0000000000000000000000000000000000000000000008902 169.0
YYD3_k127_5788650_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 469.0
YYD3_k127_5788650_1 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000001711 215.0
YYD3_k127_5799224_0 Belongs to the glycosyl hydrolase 28 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 536.0
YYD3_k127_5799224_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 524.0
YYD3_k127_5799224_2 alpha-L-rhamnosidase - - - 0.000000000000000000000000000000000000000005243 176.0
YYD3_k127_5799224_3 PFAM Outer membrane efflux protein - - - 0.0000000000000000000003735 100.0
YYD3_k127_5799224_4 Pentapeptide repeats (9 copies) - - - 0.0000000000001878 77.0
YYD3_k127_5799224_6 - - - - 0.000000006316 68.0
YYD3_k127_5825505_0 heat shock protein binding - - - 6.901e-222 703.0
YYD3_k127_5825505_1 4fe-4S ferredoxin, iron-sulfur binding domain protein K00384,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 545.0
YYD3_k127_5825505_10 Ndr family - - - 0.0000000000000000000000000001484 124.0
YYD3_k127_5825505_2 PFAM Alanine dehydrogenase PNT K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 398.0
YYD3_k127_5825505_3 protein required for cytochrome oxidase assembly K02259 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 368.0
YYD3_k127_5825505_4 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001131 274.0
YYD3_k127_5825505_5 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001495 262.0
YYD3_k127_5825505_6 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000005626 202.0
YYD3_k127_5825505_7 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000007775 169.0
YYD3_k127_5825505_8 - - - - 0.000000000000000000000000000000000000009888 152.0
YYD3_k127_5825505_9 MazG nucleotide pyrophosphohydrolase domain - - - 0.000000000000000000000000000000000001712 140.0
YYD3_k127_5842033_0 Organic solvent tolerance protein OstA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 546.0
YYD3_k127_5842033_1 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000001458 224.0
YYD3_k127_5843950_0 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000159 275.0
YYD3_k127_5843950_1 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000001848 224.0
YYD3_k127_5845244_0 PFAM Family of - - - 0.000000000000000000000000000000000000000000000000000000000008992 222.0
YYD3_k127_5845244_1 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000002347 100.0
YYD3_k127_5852475_0 Peptidase family C25 - - - 8.053e-266 878.0
YYD3_k127_5852475_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003404 250.0
YYD3_k127_5914052_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 9.44e-210 660.0
YYD3_k127_5914052_1 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000001634 218.0
YYD3_k127_5914052_2 Transposase IS200 like - - - 0.000000000000000000000000000000000000000004341 162.0
YYD3_k127_5919068_0 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006062 332.0
YYD3_k127_5919068_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009085 304.0
YYD3_k127_5920461_0 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 373.0
YYD3_k127_5920461_1 - - - - 0.0000000000000000000000000000000000000000000007804 171.0
YYD3_k127_5920461_2 O-Methyltransferase - - - 0.000000000000000000000000000000000000000003948 166.0
YYD3_k127_5923213_0 Fatty acid desaturase K00508 - 1.14.19.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 518.0
YYD3_k127_5923213_1 Fatty acid desaturase K00508 - 1.14.19.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 516.0
YYD3_k127_5923213_2 Glycoside hydrolase family 16 K01216 - 3.2.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007077 342.0
YYD3_k127_5923213_3 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 316.0
YYD3_k127_593820_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.404e-221 702.0
YYD3_k127_593820_1 seryl-tRNA synthetase K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 558.0
YYD3_k127_593820_2 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 445.0
YYD3_k127_593820_3 PFAM Peptidase, membrane zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000248 267.0
YYD3_k127_593820_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000003056 228.0
YYD3_k127_593820_5 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000000000000000357 98.0
YYD3_k127_593820_6 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000000972 80.0
YYD3_k127_593820_7 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0003381 48.0
YYD3_k127_5938659_0 domain protein K01179,K01997,K04618 - 1.1.3.9,3.2.1.4 0.00000000000000000000000000000000000000000000000000138 198.0
YYD3_k127_5938659_1 metallopeptidase activity K12287 - - 0.000000000000001986 89.0
YYD3_k127_5946804_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 6.651e-285 893.0
YYD3_k127_5946804_1 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000001483 196.0
YYD3_k127_5946804_2 Trigger factor K03545 - - 0.0000000000000000000000000000000000001708 157.0
YYD3_k127_5946804_3 - - - - 0.0001427 48.0
YYD3_k127_5966878_1 arylsulfatase activity - - - 0.00000000000000000009251 103.0
YYD3_k127_5966878_3 - - - - 0.0009159 48.0
YYD3_k127_5978701_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009982 449.0
YYD3_k127_5978701_1 Two component transcriptional regulator, LytTR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000003949 224.0
YYD3_k127_5978701_2 cheY-homologous receiver domain - - - 0.00000000000000000001949 98.0
YYD3_k127_5978701_3 Hep Hag repeat protein - - - 0.0005837 52.0
YYD3_k127_5989244_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000001522 230.0
YYD3_k127_5989244_1 phosphoesterase, PA-phosphatase related - - - 0.000000000000000000000000000000000000005809 153.0
YYD3_k127_5989244_2 Protein of unknown function (DUF1572) - - - 0.000000000000000000000000000000000000438 144.0
YYD3_k127_599528_0 protein involved in exopolysaccharide biosynthesis - - - 0.0 1056.0
YYD3_k127_599528_1 Integral membrane protein TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 385.0
YYD3_k127_599528_2 PFAM FAD dependent oxidoreductase K15736 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 323.0
YYD3_k127_599528_3 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA - - - 0.00000000000000000000000000000001112 132.0
YYD3_k127_599528_4 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04757 - 2.7.11.1 0.0000000000000000000000000000001022 128.0
YYD3_k127_599528_5 Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04069 - 1.97.1.4 0.0000000001808 66.0
YYD3_k127_5997094_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 2.111e-225 709.0
YYD3_k127_5997094_1 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000000518 156.0
YYD3_k127_5999045_0 COG2373 Large extracellular alpha-helical protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008352 454.0
YYD3_k127_5999045_1 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.00003146 57.0
YYD3_k127_600683_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 391.0
YYD3_k127_600683_1 Mandelate racemase muconate lactonizing enzyme K02549,K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 4.2.1.113,5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006959 322.0
YYD3_k127_600683_2 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000001937 213.0
YYD3_k127_600683_3 COGs COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 - 3.4.16.4 0.0000000000000000000174 93.0
YYD3_k127_6008241_0 RagB SusD domain protein K21572 - - 3.381e-285 893.0
YYD3_k127_6008241_1 TonB dependent receptor K21573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901 385.0
YYD3_k127_6008241_2 SusE outer membrane protein K21571 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 300.0
YYD3_k127_6008241_3 Arabinogalactan endo-beta-1,4-galactanase K01224 - 3.2.1.89 0.0000000000003682 75.0
YYD3_k127_6033771_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 3.438e-252 800.0
YYD3_k127_6033771_1 Domain of unknown function (DUF802) - - - 0.000000000000000000000000000000000004529 138.0
YYD3_k127_6033771_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000001405 94.0
YYD3_k127_6037099_0 ATPases associated with a variety of cellular activities K06147 - - 5.349e-216 685.0
YYD3_k127_6054459_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004616 409.0
YYD3_k127_6054459_1 Exodeoxyribonuclease V, gamma subunit K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000988 356.0
YYD3_k127_6069915_0 Bacterial membrane protein YfhO - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 413.0
YYD3_k127_6069915_1 Polysaccharide biosynthesis C-terminal domain - - - 0.0000000000000317 81.0
YYD3_k127_6071947_0 regulator of cell autolysis - - - 0.00000000000000000000000000000000000000000000000000000000000000231 237.0
YYD3_k127_6071947_1 Response regulator of the LytR AlgR family K02477 - - 0.0000000000000000000000000000000000000000000000002783 184.0
YYD3_k127_607244_0 PFAM Peptidase M56, BlaR1 - - - 0.000000000000000000000000000000000000000000000000000004524 212.0
YYD3_k127_6073324_0 DNA mismatch repair protein MutT K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 463.0
YYD3_k127_6073324_1 Bacterial protein of unknown function (DUF853) K06915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 369.0
YYD3_k127_6073324_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009439 272.0
YYD3_k127_6073324_3 KR domain - - - 0.00000000000000000000000000000000000000000000000489 181.0
YYD3_k127_6073324_5 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00001378 50.0
YYD3_k127_6073648_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 539.0
YYD3_k127_6073648_1 Phage shock protein A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 407.0
YYD3_k127_6073648_2 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 379.0
YYD3_k127_6073648_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001626 246.0
YYD3_k127_6073648_4 - - - - 0.00000000000000000000000000000000003341 140.0
YYD3_k127_6102905_0 peptidase S9 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005399 546.0
YYD3_k127_6102905_1 GSCFA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001668 263.0
YYD3_k127_6102905_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005393 248.0
YYD3_k127_6102905_3 Belongs to the GbsR family - - - 0.00000000000000000000000000000000000000001896 158.0
YYD3_k127_6102905_4 Aldo/keto reductase family K19265 - - 0.0000000000000000099 85.0
YYD3_k127_6108924_0 PFAM TonB-dependent Receptor Plug - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 611.0
YYD3_k127_6108924_1 cytochrome C peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 335.0
YYD3_k127_6108924_2 SprB repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 325.0
YYD3_k127_6108924_3 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000003867 143.0
YYD3_k127_6108924_5 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000981 89.0
YYD3_k127_6108924_6 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000002754 91.0
YYD3_k127_6116533_0 beta-lactamase - - - 2.305e-264 821.0
YYD3_k127_6116533_1 Amidohydrolase family - - - 1.283e-205 654.0
YYD3_k127_6116533_2 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000696 389.0
YYD3_k127_6116533_3 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000002812 267.0
YYD3_k127_6133614_0 SPTR CHU large protein - - - 0.0000000000000000000000000000000001425 147.0
YYD3_k127_6133614_1 PFAM PKD domain - - - 0.000009172 57.0
YYD3_k127_6133614_2 Trypsin-like peptidase domain K04771 - 3.4.21.107 0.00009659 51.0
YYD3_k127_6135135_0 glucosamine N-acyltransferase K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 325.0
YYD3_k127_6135135_1 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002089 280.0
YYD3_k127_6135135_2 D-alanyl-D-alanine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003445 281.0
YYD3_k127_6135135_3 With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA K02610 - - 0.0000000000000000000000000001444 115.0
YYD3_k127_6135447_0 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000001062 212.0
YYD3_k127_6135447_1 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000006055 156.0
YYD3_k127_6135447_2 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000244 138.0
YYD3_k127_6135447_3 - - - - 0.000002218 51.0
YYD3_k127_6141981_0 Periplasmic component of the Tol biopolymer transport system - - - 2.956e-280 895.0
YYD3_k127_6141981_1 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000001489 120.0
YYD3_k127_6141981_2 alanine dehydrogenase K00259 - 1.4.1.1 0.00000000002385 64.0
YYD3_k127_6148044_0 TonB-dependent receptor plug K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000001249 256.0
YYD3_k127_6148581_0 Transketolase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 452.0
YYD3_k127_6148581_1 Transketolase K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 359.0
YYD3_k127_6148581_2 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006317 260.0
YYD3_k127_6148581_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000002728 145.0
YYD3_k127_6148581_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000006991 119.0
YYD3_k127_614973_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 334.0
YYD3_k127_614973_1 COGs COG2303 Choline dehydrogenase and related flavoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000001292 228.0
YYD3_k127_614973_2 Belongs to the DegT DnrJ EryC1 family K12452 - 1.17.1.1 0.0000002482 62.0
YYD3_k127_6158914_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 1.476e-290 952.0
YYD3_k127_6174834_0 COGs COG0659 Sulfate permease and related transporter (MFS superfamily) K01673,K03321 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 346.0
YYD3_k127_6174834_1 acetyltransferase - - - 0.000000000000000000000000000000000000000000116 162.0
YYD3_k127_6179805_0 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 370.0
YYD3_k127_6179805_1 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 325.0
YYD3_k127_6179805_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003429 304.0
YYD3_k127_6179805_3 Histidine kinase - - - 0.0000000000000000000000000000000002674 134.0
YYD3_k127_6183461_0 Participates in initiation and elongation during chromosome replication - - - 0.000000000000000000000000000000000000000000000000000002601 203.0
YYD3_k127_6183461_1 regulation of response to stimulus - - - 0.00000000000000008205 90.0
YYD3_k127_6188407_0 Saccharopine dehydrogenase C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 372.0
YYD3_k127_6188407_1 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 0.000000000000000000000000000000000001644 154.0
YYD3_k127_6188407_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000002475 121.0
YYD3_k127_6188407_3 YCII-related domain - - - 0.000000003523 57.0
YYD3_k127_6188516_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 2.408e-272 853.0
YYD3_k127_6188516_1 PFAM Aminotransferase class I and II K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 566.0
YYD3_k127_6188516_2 Pyridoxal-phosphate dependent enzyme K01697,K01738 - 2.5.1.47,4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 419.0
YYD3_k127_6188516_3 NAD dependent epimerase dehydratase family protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000001727 216.0
YYD3_k127_6188516_4 self proteolysis K20276 - - 0.0000000000000000000000000000000000338 143.0
YYD3_k127_6188516_5 Flavin reductase like domain - - - 0.000000003542 58.0
YYD3_k127_6200488_0 PFAM Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000225 207.0
YYD3_k127_6200488_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000007136 174.0
YYD3_k127_6200488_2 COG3279 Response regulator of the LytR AlgR family K02477 - - 0.0000000000000000002128 93.0
YYD3_k127_6205905_0 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 301.0
YYD3_k127_6205905_1 Tocopherol cyclase - - - 0.0000000000000001278 83.0
YYD3_k127_6205905_2 Domain of unknown function (DUF4271) - - - 0.000004316 58.0
YYD3_k127_6211798_0 with chaperone activity ATP-binding subunit K03696 - - 5.515e-199 625.0
YYD3_k127_6211798_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 564.0
YYD3_k127_6211798_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 440.0
YYD3_k127_6211798_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002813 271.0
YYD3_k127_6211798_4 OstA-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006508 271.0
YYD3_k127_6211798_5 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000003899 242.0
YYD3_k127_6211798_6 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000000006624 159.0
YYD3_k127_6211798_7 Protein of unknown function (DUF2795) - - - 0.000000000000000000000000000000000000003445 146.0
YYD3_k127_6211798_8 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000009948 92.0
YYD3_k127_6211798_9 Bacterial SH3 domain homologues - - - 0.000006488 57.0
YYD3_k127_6216507_0 Protein of unknown function (DUF2723) - - - 9.4e-323 1005.0
YYD3_k127_6239886_0 Tetratricopeptide repeat - - - 0.0000000000000003481 91.0
YYD3_k127_6239886_1 YtxH-like protein - - - 0.0000000000002072 77.0
YYD3_k127_6239886_2 - - - - 0.000000003612 61.0
YYD3_k127_6239886_3 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000005586 62.0
YYD3_k127_6239886_4 - - - - 0.0001312 50.0
YYD3_k127_624716_0 PFAM Cache K08738 - - 0.000000000000000000000000000000000000000000000000000000000000000000001069 258.0
YYD3_k127_624716_1 Single Cache domain 2 K07647 - 2.7.13.3 0.00000000000000000000000000000000000000000001439 182.0
YYD3_k127_624716_2 domain, Protein - - - 0.000000000000000000000000000001473 124.0
YYD3_k127_6258432_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 1.979e-244 775.0
YYD3_k127_6258432_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008237 509.0
YYD3_k127_6258432_2 Leucyl-tRNA synthetase, Domain 2 K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000002408 222.0
YYD3_k127_6259708_0 Tryptophan halogenase - - - 3.492e-203 638.0
YYD3_k127_6259708_1 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009578 461.0
YYD3_k127_6259708_2 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 394.0
YYD3_k127_6259708_3 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000000000004873 196.0
YYD3_k127_6259708_4 3-oxoacyl-ACP synthase - - - 0.0000000000000000000000000000000000000000000001818 175.0
YYD3_k127_6259708_5 - - - - 0.000000000000000000000000000000000000003836 153.0
YYD3_k127_6259708_6 Phosphopantetheine attachment site K02078 - - 0.000000000000000000000000000004979 121.0
YYD3_k127_6259708_7 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.000000000000000005583 89.0
YYD3_k127_6262821_0 TonB dependent receptor - - - 0.0 1116.0
YYD3_k127_6262821_1 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 464.0
YYD3_k127_6262821_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 389.0
YYD3_k127_6262821_3 beta-1,4-mannooligosaccharide phosphorylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007258 370.0
YYD3_k127_6262821_4 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026 346.0
YYD3_k127_6262821_5 AraC type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 336.0
YYD3_k127_6262821_6 Highly conserved protein containing a thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004503 329.0
YYD3_k127_6268112_0 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005274 371.0
YYD3_k127_6268112_1 PFAM Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000006899 192.0
YYD3_k127_6268112_2 Cation transporter K11741 - - 0.000000000000000000000000000000000000000000005914 166.0
YYD3_k127_6268112_3 Outer membrane protein beta-barrel domain - - - 0.0000000000009821 77.0
YYD3_k127_6271067_0 amine dehydrogenase activity - - - 4.738e-206 677.0
YYD3_k127_6271067_1 - - - - 0.000000000000000000000000000000000000000000001344 172.0
YYD3_k127_6271067_2 Protease prsW family - - - 0.000000000000000000000000000000000000000001606 164.0
YYD3_k127_6271067_3 Protease prsW family - - - 0.000000000000000000000000000000000001133 148.0
YYD3_k127_6271067_4 phosphohydrolase - - - 0.000000000000000000001019 102.0
YYD3_k127_6272783_0 COGs COG4591 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 581.0
YYD3_k127_6272783_1 SPTR Efflux transporter, RND family, MFP subunit K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 363.0
YYD3_k127_6272783_2 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 331.0
YYD3_k127_6277733_0 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007398 325.0
YYD3_k127_6277733_1 Belongs to the P-Pant transferase superfamily - - - 0.0000000000000000000000001023 112.0
YYD3_k127_6277733_2 - - - - 0.0001721 50.0
YYD3_k127_6290890_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 2.256e-243 758.0
YYD3_k127_6290890_1 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 529.0
YYD3_k127_6290890_2 membrane protein involved in aromatic hydrocarbon degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008835 293.0
YYD3_k127_6290890_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000005229 259.0
YYD3_k127_6290890_4 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000001444 205.0
YYD3_k127_6290890_5 Domain of unknown function (DUF3127) - - - 0.0000000000000000000000000000000003524 135.0
YYD3_k127_6290890_6 energy transducer activity K01181,K03832 - 3.2.1.8 0.00000000001952 76.0
YYD3_k127_6301842_0 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 456.0
YYD3_k127_6301842_1 - - - - 0.00006026 50.0
YYD3_k127_6307175_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 481.0
YYD3_k127_6307175_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 473.0
YYD3_k127_6307175_2 COGs COG3752 membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004871 315.0
YYD3_k127_6307175_3 Conserved repeat domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001214 271.0
YYD3_k127_6307175_4 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000001332 176.0
YYD3_k127_6307175_5 Orotidine 5''-phosphate decarboxylase K01591 GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.00000000000000000000000000000003238 128.0
YYD3_k127_6307175_6 NifU-like domain - - - 0.00000000000000000000000005115 109.0
YYD3_k127_6308952_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 389.0
YYD3_k127_6308952_1 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000003195 226.0
YYD3_k127_6308952_2 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000006912 164.0
YYD3_k127_6308952_3 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00007062 45.0
YYD3_k127_6308952_4 Maf-like protein K06287 - - 0.0002999 44.0
YYD3_k127_6323742_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 333.0
YYD3_k127_6323742_1 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004551 295.0
YYD3_k127_6326169_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 6.48e-229 711.0
YYD3_k127_6326169_1 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005993 271.0
YYD3_k127_6326169_2 PFAM Aldo keto reductase family K19265 - - 0.000000000000000000000000000007164 120.0
YYD3_k127_6326169_3 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000008071 110.0
YYD3_k127_6326169_4 chlorophyll binding - - - 0.0000000000000000004699 91.0
YYD3_k127_6333550_0 Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 481.0
YYD3_k127_6333550_1 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.0000000000000000000000003612 109.0
YYD3_k127_6333550_2 Sodium/hydrogen exchanger family - - - 0.00000009069 57.0
YYD3_k127_6339481_0 ABC-type Na efflux pump, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000132 188.0
YYD3_k127_6339481_1 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000004003 111.0
YYD3_k127_6339481_2 TIGRFAM Protein of - - - 0.0000000000704 65.0
YYD3_k127_634676_0 Endoribonuclease that initiates mRNA decay K18682 - - 1.791e-239 751.0
YYD3_k127_634676_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 4.907e-200 644.0
YYD3_k127_634676_2 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004681 348.0
YYD3_k127_634676_3 Transcriptional regulator K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004192 278.0
YYD3_k127_634676_4 self proteolysis - - - 0.000000000000002879 90.0
YYD3_k127_634676_5 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000009948 65.0
YYD3_k127_6346797_0 Histidine kinase - - - 0.000000000000000000000000000003941 136.0
YYD3_k127_6348303_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1226.0
YYD3_k127_6348303_1 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - 4.008e-199 631.0
YYD3_k127_6348303_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005014 251.0
YYD3_k127_6362048_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004431 276.0
YYD3_k127_6362048_1 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005948 266.0
YYD3_k127_6362048_10 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000005811 124.0
YYD3_k127_6362048_11 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000003151 115.0
YYD3_k127_6362048_12 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000001055 104.0
YYD3_k127_6362048_13 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000007035 78.0
YYD3_k127_6362048_2 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001263 254.0
YYD3_k127_6362048_3 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000004295 217.0
YYD3_k127_6362048_4 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000001521 214.0
YYD3_k127_6362048_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000001031 181.0
YYD3_k127_6362048_6 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000006014 149.0
YYD3_k127_6362048_7 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000002828 137.0
YYD3_k127_6362048_8 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000003241 137.0
YYD3_k127_6362048_9 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000002912 126.0
YYD3_k127_6375299_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007895 294.0
YYD3_k127_6375299_1 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000046 222.0
YYD3_k127_63788_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000002976 138.0
YYD3_k127_63788_1 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.000000000000000000000000003769 116.0
YYD3_k127_63788_2 - - - - 0.0000000000001102 75.0
YYD3_k127_6387381_0 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.0000000000000000000000000005717 119.0
YYD3_k127_6387381_1 Endonuclease I - - - 0.00003936 56.0
YYD3_k127_6392202_0 PFAM ROK family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 389.0
YYD3_k127_6392202_1 IMG reference gene - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 405.0
YYD3_k127_6392202_2 Glycosyl transferase, family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 358.0
YYD3_k127_6392202_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009426 330.0
YYD3_k127_6392202_4 fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 318.0
YYD3_k127_6392202_5 AAA domain, putative AbiEii toxin, Type IV TA system K02003 - - 0.0000000000000000000000000000000000000000000000000023 186.0
YYD3_k127_6392202_6 OsmC-like protein K07397 - - 0.00000000000000000000000000000000000000307 150.0
YYD3_k127_6434334_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 2033.0
YYD3_k127_6460005_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1254.0
YYD3_k127_6460005_1 Transporter associated domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 507.0
YYD3_k127_6460005_2 GHMP Kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000005008 243.0
YYD3_k127_6460005_3 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000007639 234.0
YYD3_k127_6460005_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000001174 220.0
YYD3_k127_6468389_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 442.0
YYD3_k127_6468389_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002796 276.0
YYD3_k127_6468389_2 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001355 269.0
YYD3_k127_6468408_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 7.319e-206 647.0
YYD3_k127_6468408_1 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006984 244.0
YYD3_k127_6468408_2 Transcriptional regulator, asnc family K03719,K05800 - - 0.00000000000000000000000000000000000000000000000000000000000000002349 226.0
YYD3_k127_6468408_3 GumN protein K09973 - - 0.000000000000000000000000000000000546 141.0
YYD3_k127_6484075_0 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 393.0
YYD3_k127_6484075_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000001194 192.0
YYD3_k127_6484075_2 - - - - 0.000000000000000000000000002239 120.0
YYD3_k127_6486091_0 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000003681 98.0
YYD3_k127_6486091_1 TamB, inner membrane protein subunit of TAM complex - - - 0.0000001976 62.0
YYD3_k127_6486091_2 PFAM Family of - - - 0.000001615 60.0
YYD3_k127_6496117_0 Phage late control gene D protein (GPD) - - - 8.39e-231 726.0
YYD3_k127_6496117_1 positive regulation of growth rate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002641 262.0
YYD3_k127_6514345_0 phenazine biosynthesis protein PhzF - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 314.0
YYD3_k127_6514345_1 POT family K03305 - - 0.000000000000000000000000000000000000000000000000000000000000000001987 230.0
YYD3_k127_6514345_2 Protein of unknown function (DUF3108) - - - 0.00000002945 55.0
YYD3_k127_6519882_0 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 474.0
YYD3_k127_6519882_1 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 372.0
YYD3_k127_6519882_2 DNA polymerase III K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007952 275.0
YYD3_k127_6524349_0 Serine protease, subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 625.0
YYD3_k127_6524349_1 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 430.0
YYD3_k127_6524349_2 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 315.0
YYD3_k127_6524349_3 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000002225 205.0
YYD3_k127_6524349_4 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000002732 190.0
YYD3_k127_6524349_5 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000001616 113.0
YYD3_k127_6524349_6 Tetratricopeptide repeat - - - 0.00008038 53.0
YYD3_k127_6539234_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006292 380.0
YYD3_k127_6539234_1 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 283.0
YYD3_k127_6539234_2 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003198 274.0
YYD3_k127_6539234_3 Domain of unknown function (DUF5122) beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000007233 246.0
YYD3_k127_6539234_4 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.0000000000000000000000000001473 119.0
YYD3_k127_6539234_5 Domain of unknown function (DUF4142) K08995 - - 0.0000000000000000001942 96.0
YYD3_k127_653939_0 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003517 456.0
YYD3_k127_653939_1 Protein conserved in bacteria K09950 - - 0.00000000000000000000000000000000000000000000000000000003563 199.0
YYD3_k127_653939_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000001093 103.0
YYD3_k127_6578434_0 Glutaminase K01425 GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 3.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 525.0
YYD3_k127_6578434_1 COG NOG10142 non supervised orthologous group - - - 0.0000000000000000004082 88.0
YYD3_k127_6578434_2 Tfp pilus assembly protein FimV - - - 0.000000000009046 70.0
YYD3_k127_6583938_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1052.0
YYD3_k127_6583938_1 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000008251 193.0
YYD3_k127_6583938_2 Protein of unknown function (DUF1648) - - - 0.000945 43.0
YYD3_k127_659310_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.381e-291 908.0
YYD3_k127_659310_1 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 364.0
YYD3_k127_659310_2 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000007505 157.0
YYD3_k127_659310_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000006082 149.0
YYD3_k127_660708_0 ASPIC UnbV domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000879 494.0
YYD3_k127_660708_1 magnesium chelatase K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004732 308.0
YYD3_k127_6608654_0 Zinc-uptake complex component A periplasmic K09815,K11707 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 346.0
YYD3_k127_6608654_1 Major Facilitator K16211 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 292.0
YYD3_k127_6608654_2 Iron dependent repressor, metal binding and dimerisation domain K03709 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002885 244.0
YYD3_k127_6609446_0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008786 245.0
YYD3_k127_6609446_1 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000003901 187.0
YYD3_k127_6609446_2 HRDC domain - - - 0.0000000000000000000000000000000000000002028 156.0
YYD3_k127_6612512_0 Belongs to the group II decarboxylase family K01580,K01634 - 4.1.1.15,4.1.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 579.0
YYD3_k127_6612512_2 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 0.000000000000000000000000000000000000000000000000000000000003209 214.0
YYD3_k127_6612512_3 - - - - 0.00000000000003429 78.0
YYD3_k127_6631462_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 4.085e-249 776.0
YYD3_k127_6631462_1 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004982 522.0
YYD3_k127_6631462_10 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K03088 - - 0.0001645 51.0
YYD3_k127_6631462_2 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 407.0
YYD3_k127_6631462_3 PDZ domain (Also known as DHR or GLGF) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 301.0
YYD3_k127_6631462_4 Single-stranded DNA-binding protein K03111 - - 0.00000000000000000000000000000000000000000000000317 176.0
YYD3_k127_6631462_5 TIGRFAM gliding motility-associated lipoprotein GldD - - - 0.0000000000000000000000000000000000000000000259 167.0
YYD3_k127_6631462_6 ribonuclease BN K07058 - - 0.0000000000000000000000000000000000002566 145.0
YYD3_k127_6631462_7 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.000000000000000000000000000000003408 133.0
YYD3_k127_6631462_8 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.00000000000000000000000000000003021 130.0
YYD3_k127_6631462_9 Signal peptide protein - - - 0.000000000000000000000000000001171 125.0
YYD3_k127_6660628_0 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000005425 216.0
YYD3_k127_6660628_1 Domain of unknown function (DUF1905) - - - 0.00000000000000000000000000000000000000000000000000000002721 200.0
YYD3_k127_6660628_2 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000004108 198.0
YYD3_k127_6660628_3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.00000000000000000000000000000000000000000000000000001302 191.0
YYD3_k127_6660628_4 Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) K00849 - 2.7.1.6 0.0000000000000000000000000000000000000000000000001171 184.0
YYD3_k127_6660628_5 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000000000000000000007796 174.0
YYD3_k127_6670123_0 Sulfatase K01130 - 3.1.6.1 3.57e-286 886.0
YYD3_k127_6670123_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001702 243.0
YYD3_k127_6670123_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000003192 154.0
YYD3_k127_6670123_3 Cytochrome c K17222 - - 0.0000000000000000000000000000000008864 135.0
YYD3_k127_6685575_0 GH3 auxin-responsive promoter - - - 3.005e-198 629.0
YYD3_k127_6685575_1 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000001452 235.0
YYD3_k127_6685575_2 outer membrane assembly lipoprotein YfiO K05807 - - 0.0000000000000000000000000000000000000000000000000000007278 199.0
YYD3_k127_6685575_3 PFAM Outer membrane lipoprotein carrier protein LolA K03634 - - 0.00000000000001473 82.0
YYD3_k127_6686101_0 PFAM sulfatase - - - 3.817e-216 680.0
YYD3_k127_6686101_1 glyoxalase - - - 0.000000000000000000000000000000000000000000000000000000005476 200.0
YYD3_k127_6686101_2 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000002177 162.0
YYD3_k127_6696218_0 Aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 2.583e-225 706.0
YYD3_k127_6696218_1 Peptidase S46 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005171 385.0
YYD3_k127_6696218_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000001248 224.0
YYD3_k127_6696218_3 Integral membrane protein (intg_mem_TP0381) - - - 0.00000000000000000000000000000000001238 145.0
YYD3_k127_6718069_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004054 372.0
YYD3_k127_6718069_1 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000007974 234.0
YYD3_k127_6718069_2 - - - - 0.000000000000000000000000003961 118.0
YYD3_k127_6724470_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000001828 190.0
YYD3_k127_6724470_1 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000008832 74.0
YYD3_k127_6724470_2 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000001142 63.0
YYD3_k127_6728356_0 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009112 291.0
YYD3_k127_6728356_1 Pkd domain containing protein - - - 0.000000000000000000000000004311 130.0
YYD3_k127_6728356_2 AsmA-like C-terminal region K07289 - - 0.00000008887 65.0
YYD3_k127_6729420_0 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000001206 261.0
YYD3_k127_6729420_1 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000006868 188.0
YYD3_k127_6756837_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1441.0
YYD3_k127_6756837_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003884 257.0
YYD3_k127_6756837_2 Thioredoxin - - - 0.0000000000000000000000000000000000000000002122 164.0
YYD3_k127_6756837_3 COG NOG17292 non supervised orthologous group - - - 0.00000002047 56.0
YYD3_k127_6769091_0 Natural resistance-associated macrophage protein - - - 3.205e-204 642.0
YYD3_k127_6769091_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 613.0
YYD3_k127_6769091_2 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005467 590.0
YYD3_k127_6769091_3 SprB repeat - - - 0.000000000002555 74.0
YYD3_k127_6769091_4 isomerase activity - - - 0.0000411 52.0
YYD3_k127_6779472_0 Elongation factor G, domain IV K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 457.0
YYD3_k127_6779472_1 heme binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 420.0
YYD3_k127_6779472_2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003403 268.0
YYD3_k127_6780979_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 408.0
YYD3_k127_6780979_1 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 312.0
YYD3_k127_6780979_2 - - - - 0.00000000000000000000271 98.0
YYD3_k127_6785888_0 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 310.0
YYD3_k127_6785888_1 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000008578 208.0
YYD3_k127_6785888_2 PFAM Cupin 2, conserved barrel - - - 0.00000000000000000000000000000000001078 141.0
YYD3_k127_6790938_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541 467.0
YYD3_k127_6790938_1 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 300.0
YYD3_k127_6790938_2 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000006094 178.0
YYD3_k127_6791182_0 Leukotriene A4 hydrolase, C-terminal - - - 7.517e-214 677.0
YYD3_k127_6791182_1 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006784 430.0
YYD3_k127_6791182_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 331.0
YYD3_k127_6791182_3 - - - - 0.00000000000000000000000000000000000000000007939 160.0
YYD3_k127_6792766_0 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 507.0
YYD3_k127_6792766_1 PFAM PSP1 C-terminal conserved region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 460.0
YYD3_k127_6792766_2 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 409.0
YYD3_k127_6792766_3 Hexapeptide repeat of succinyl-transferase K02617,K08279 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 284.0
YYD3_k127_6792766_4 COG2812 DNA polymerase III, gamma tau subunits K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000001062 229.0
YYD3_k127_6792766_5 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000001944 186.0
YYD3_k127_6793787_0 Alpha/beta hydrolase family K01563,K22318 - 3.8.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009141 337.0
YYD3_k127_6793787_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000003653 207.0
YYD3_k127_6793787_2 Histidine kinase - - - 0.000000000000000008376 97.0
YYD3_k127_6793876_0 tRNA nucleotidyltransferase K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006334 601.0
YYD3_k127_6793876_1 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007656 416.0
YYD3_k127_6801397_0 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 291.0
YYD3_k127_6801397_1 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000002175 156.0
YYD3_k127_6801397_2 - - - - 0.0000000000000000000000000000000000000001373 163.0
YYD3_k127_6801397_3 - - - - 0.00000000000000000000000231 109.0
YYD3_k127_6812567_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000008783 229.0
YYD3_k127_6812567_1 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 0.00000000000001589 76.0
YYD3_k127_681443_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 3.766e-221 691.0
YYD3_k127_681443_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 4.358e-214 691.0
YYD3_k127_681443_2 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 590.0
YYD3_k127_681443_3 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004813 548.0
YYD3_k127_681443_4 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003733 260.0
YYD3_k127_681443_5 - - - - 0.00000000000000000000000000000000000000000001433 173.0
YYD3_k127_681443_6 RNA recognition motif - - - 0.000000000000000000006643 98.0
YYD3_k127_681443_7 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000006651 72.0
YYD3_k127_681443_8 PFAM conserved - - - 0.0000004932 51.0
YYD3_k127_681443_9 resolvase domain protein - - - 0.0004132 43.0
YYD3_k127_6826322_0 outer membrane porin, OprD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005204 473.0
YYD3_k127_6826322_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000007143 228.0
YYD3_k127_6826322_2 Acetyltransferase (GNAT) domain K00657 - 2.3.1.57 0.000000000000000000000000000000000000000001803 160.0
YYD3_k127_6826322_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000006869 129.0
YYD3_k127_6828220_0 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003496 505.0
YYD3_k127_6828220_1 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 377.0
YYD3_k127_6828220_2 Peptidase family M28 - - - 0.0000000000000000000001394 99.0
YYD3_k127_6846045_0 Mycolic acid cyclopropane synthetase K00574,K20238 - 2.1.1.317,2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 488.0
YYD3_k127_6846045_1 PFAM Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004371 243.0
YYD3_k127_6846045_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000004741 174.0
YYD3_k127_6877873_0 Two component regulator propeller domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 610.0
YYD3_k127_6877873_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000000000000000007952 250.0
YYD3_k127_6877873_2 PFAM Endonuclease Exonuclease phosphatase K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000004005 177.0
YYD3_k127_6877873_3 Divergent 4Fe-4S mono-cluster - - - 0.000000000000000000000000000000000009509 141.0
YYD3_k127_6877873_4 - - - - 0.0000292 51.0
YYD3_k127_6879585_0 of the AAA class - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006467 606.0
YYD3_k127_6879585_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 411.0
YYD3_k127_6879585_2 - - - - 0.000000000000000000000000000000000000000000000000000001205 198.0
YYD3_k127_6879585_3 Acetyltransferase (GNAT) domain K22441 - 2.3.1.57 0.000000000000000000000000000000000000000000001183 170.0
YYD3_k127_6879585_5 Acetyltransferase (GNAT) domain K03828 - - 0.00000000000000000000000000000001244 132.0
YYD3_k127_6885560_0 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000137 248.0
YYD3_k127_6885560_1 - - - - 0.0000000000000000000000000000000000000001875 154.0
YYD3_k127_6885560_2 - - - - 0.000000000000000000000000000007139 134.0
YYD3_k127_6885560_3 FR47-like protein - - - 0.00000000000000000000000008728 112.0
YYD3_k127_6885560_4 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.0000000000000124 77.0
YYD3_k127_695437_0 Carboxypeptidase regulatory-like domain - - - 2.799e-291 910.0
YYD3_k127_695437_1 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000001482 85.0
YYD3_k127_708692_0 PA14 K08738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 532.0
YYD3_k127_708692_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003739 446.0
YYD3_k127_708692_2 glyoxalase III activity K01425,K13652 - 3.5.1.2 0.0000000000000000000000000000000000000000000004911 180.0
YYD3_k127_708692_3 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000000000000000000002062 113.0
YYD3_k127_708692_4 Antibiotic resistance protein VanZ - - - 0.0000001603 58.0
YYD3_k127_711620_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1385.0
YYD3_k127_711620_1 - - - - 0.0000000000000000000002508 98.0
YYD3_k127_711620_2 Peptide-N-glycosidase F, C terminal - - - 0.00000000000000003545 86.0
YYD3_k127_717319_0 Belongs to the aldehyde dehydrogenase family K10217 - 1.2.1.32,1.2.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 611.0
YYD3_k127_717319_1 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 430.0
YYD3_k127_717319_2 Endoribonuclease L-PSP K15067 - 3.5.99.5 0.000000000000000000000000000000000000000007654 158.0
YYD3_k127_764114_0 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 349.0
YYD3_k127_764114_1 Transmembrane and tetratricopeptide repeat containing 3 - GO:0001763,GO:0002009,GO:0003401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009887,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010604,GO:0012505,GO:0019222,GO:0030154,GO:0030162,GO:0030323,GO:0030324,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0040007,GO:0042176,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048286,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048729,GO:0048731,GO:0048747,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0055001,GO:0055002,GO:0060255,GO:0060425,GO:0060429,GO:0060441,GO:0060447,GO:0060541,GO:0060560,GO:0060562,GO:0060602,GO:0061061,GO:0061136,GO:0061138,GO:0065007,GO:0080090,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364 - 0.0000000000000000000000000000000000000000000000003463 196.0
YYD3_k127_764114_2 Putative auto-transporter adhesin, head GIN domain - - - 0.0000000000000004041 87.0
YYD3_k127_771464_0 LVIVD repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 357.0
YYD3_k127_771464_1 - - - - 0.000000000000000000000000000004026 126.0
YYD3_k127_771464_3 DNA-templated transcription, initiation K03088 - - 0.00000001946 57.0
YYD3_k127_771464_4 Pfam Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 0.0003116 44.0
YYD3_k127_777201_0 Uncharacterized protein conserved in bacteria (DUF2179) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 367.0
YYD3_k127_777201_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009686 278.0
YYD3_k127_777201_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000002111 188.0
YYD3_k127_777201_3 - - - - 0.0000000000000003777 85.0
YYD3_k127_799090_0 LytTr DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009139 314.0
YYD3_k127_799090_1 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000006421 154.0
YYD3_k127_799090_2 - - - - 0.000000000000000000001543 100.0
YYD3_k127_801379_0 S1 P1 Nuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007487 376.0
YYD3_k127_801379_1 transport system involved in gliding motility, auxiliary component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008705 355.0
YYD3_k127_801379_2 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.0000000000000000000000000000000000000000002283 161.0
YYD3_k127_801379_3 - - - - 0.0000000000000000000000000000000000000000005111 171.0
YYD3_k127_801379_4 Domain of unknown function (DUF3817) - - - 0.0000000000000000005811 90.0
YYD3_k127_803817_0 ABC-type transport system involved in lipoprotein release permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 355.0
YYD3_k127_803817_1 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 347.0
YYD3_k127_803817_2 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000001775 97.0
YYD3_k127_841931_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007377 419.0
YYD3_k127_841931_1 - - - - 0.00000000000000000000000000000000000000000002511 169.0
YYD3_k127_853251_0 Protein of unknown function (DUF3078) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000784 409.0
YYD3_k127_853251_1 Belongs to the DapA family K01714,K21062 - 3.5.4.22,4.3.3.7 0.00000000000000000000000000000000000000000004078 163.0
YYD3_k127_853251_2 Domain of unknown function (DUF1905) - - - 0.000000000000000000000000000000000000000002314 162.0
YYD3_k127_853251_3 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.00000000000000000000000000000000000000008212 160.0
YYD3_k127_853251_4 PFAM glycosyl hydrolase 53 domain protein K01224 - 3.2.1.89 0.00000000000000000005004 92.0
YYD3_k127_858958_0 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 331.0
YYD3_k127_858958_1 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005961 269.0
YYD3_k127_858958_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000000000000000000000000000000000000000000000001738 197.0
YYD3_k127_858958_3 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000003694 193.0
YYD3_k127_858958_4 Putative zincin peptidase - - - 0.00000000000000000000000000000000001681 143.0
YYD3_k127_858958_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000002629 145.0
YYD3_k127_858958_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000001916 122.0
YYD3_k127_858958_7 Cytochrome c K00406,K12263 - - 0.00000000000000000002172 94.0
YYD3_k127_858958_8 Hsp20/alpha crystallin family K13993 - - 0.000000000000001167 82.0
YYD3_k127_860281_0 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 478.0
YYD3_k127_860281_1 Formate nitrite K02598,K06212 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 282.0
YYD3_k127_860281_2 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000000000001944 186.0
YYD3_k127_867723_0 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005947 416.0
YYD3_k127_867723_1 Belongs to the SEDS family K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008099 353.0
YYD3_k127_867723_2 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.0000000000000000000000000000000000000000000000002299 184.0
YYD3_k127_872599_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006535 547.0
YYD3_k127_872599_1 Belongs to the peptidase S8 family K13275 - - 0.000000000000000000000000000001013 135.0
YYD3_k127_872599_2 Putative peptidoglycan binding domain - - - 0.000008002 56.0
YYD3_k127_891237_0 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 413.0
YYD3_k127_891237_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 304.0
YYD3_k127_891237_2 Cytochrome c - - - 0.0000000000000000000000000000000000003844 144.0
YYD3_k127_891520_0 SusD family K21572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008036 595.0
YYD3_k127_891520_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 308.0
YYD3_k127_891520_2 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003928 248.0
YYD3_k127_921896_0 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009938 419.0
YYD3_k127_921896_1 Dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000004464 211.0
YYD3_k127_921896_2 ABC transporter K02003 - - 0.0000000000000000001362 89.0
YYD3_k127_945925_0 AdoMet dependent proline di-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 325.0
YYD3_k127_945925_1 Outer membrane lipoprotein-sorting protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 325.0
YYD3_k127_945925_2 - - - - 0.0000000000000000000000000000000000000000000000000000000002358 211.0
YYD3_k127_945925_3 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000008927 177.0
YYD3_k127_951269_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 1.877e-266 827.0
YYD3_k127_951269_1 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000438 246.0
YYD3_k127_951269_2 PFAM PspC domain K03973 - - 0.00000000000000000000000000000000000000000000000000001887 197.0
YYD3_k127_951269_3 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000001328 167.0
YYD3_k127_951269_4 Transcriptional regulator PadR-like family K10947 - - 0.000000000000000000000000000000000004397 141.0
YYD3_k127_95198_0 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008832 498.0
YYD3_k127_95198_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 363.0
YYD3_k127_95198_2 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 331.0
YYD3_k127_95198_3 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009933 297.0
YYD3_k127_95198_4 Eukaryotic translation initiation factor eIF2A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002578 260.0
YYD3_k127_95198_5 membrane organization - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001431 248.0
YYD3_k127_95198_6 - - - - 0.0000000000001704 74.0
YYD3_k127_95198_7 Tryptophan halogenase K16033 - - 0.00000000005773 70.0
YYD3_k127_95198_8 geranylgeranyl reductase - - - 0.00004886 53.0
YYD3_k127_95817_0 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004985 402.0
YYD3_k127_95817_1 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007873 336.0
YYD3_k127_95817_2 TIGRFAM phosphoesterase, MJ0936 family K07095 - - 0.00000000000000000000000000000000000000000000000000000000000004587 217.0
YYD3_k127_95817_3 isomerase activity - - - 0.000000000000000000000000000000000000003606 170.0
YYD3_k127_980394_0 PFAM von Willebrand factor type A domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006034 252.0
YYD3_k127_980394_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000005507 220.0
YYD3_k127_980394_2 FMN-dependent dehydrogenase K00467 - 1.13.12.4 0.000000000000000000000000000000000000000000000000000001717 199.0
YYD3_k127_980394_3 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000000000000104 158.0
YYD3_k127_980394_4 DinB family - - - 0.00000000000000000000000000000000000001106 151.0