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Overview

ID MAG04659
Name YYD3_bin.9
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order CACIAM-22H2
Family CACIAM-22H2
Genus DATFES01
Species DATFES01 sp035457725
Assembly information
Completeness (%) 91.56
Contamination (%) 0.25
GC content (%) 65.0
N50 (bp) 21,106
Genome size (bp) 3,679,883

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3547

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1031612_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 5.683e-215 685.0
YYD3_k127_1031612_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 599.0
YYD3_k127_1031612_10 Protein of unknown function, DUF547 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 301.0
YYD3_k127_1031612_11 Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate K00598 - 2.1.1.144 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 287.0
YYD3_k127_1031612_12 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007706 264.0
YYD3_k127_1031612_13 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000000004649 234.0
YYD3_k127_1031612_14 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000002192 170.0
YYD3_k127_1031612_15 PFAM Ion transport 2 domain protein - - - 0.00000000000000000000000000000000003898 140.0
YYD3_k127_1031612_16 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000005683 110.0
YYD3_k127_1031612_17 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000006195 100.0
YYD3_k127_1031612_18 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000001462 78.0
YYD3_k127_1031612_2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 589.0
YYD3_k127_1031612_3 Peptidase dimerisation domain K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 576.0
YYD3_k127_1031612_4 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 484.0
YYD3_k127_1031612_5 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 474.0
YYD3_k127_1031612_6 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 461.0
YYD3_k127_1031612_7 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 449.0
YYD3_k127_1031612_8 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 421.0
YYD3_k127_1031612_9 Pyrimidine-specific ribonucleoside hydrolase RihA K01239 - 3.2.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 329.0
YYD3_k127_1045069_0 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002153 279.0
YYD3_k127_1045069_1 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001354 270.0
YYD3_k127_1045069_2 - - - - 0.000000000000000000000000000000000000000000000003253 193.0
YYD3_k127_1045069_3 Protein of unknown function (DUF2459) - - - 0.000000000000000000000000000000000000000000002136 175.0
YYD3_k127_1045069_4 - - - - 0.0001808 48.0
YYD3_k127_1045069_5 Abc transporter K11004 - - 0.0007654 48.0
YYD3_k127_1069017_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter - - - 2.646e-309 975.0
YYD3_k127_1069017_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 4.252e-276 860.0
YYD3_k127_1069017_10 Predicted integral membrane protein (DUF2189) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000012 291.0
YYD3_k127_1069017_11 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004552 274.0
YYD3_k127_1069017_12 Phenylacetic acid degradation protein PaaY K02617 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004256 261.0
YYD3_k127_1069017_13 Universal stress protein UspA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005168 246.0
YYD3_k127_1069017_14 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.00000000000000000000000000000000000000000000000000000000002182 210.0
YYD3_k127_1069017_15 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000006252 192.0
YYD3_k127_1069017_16 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000001061 189.0
YYD3_k127_1069017_17 Shikimate kinase K00851 - 2.7.1.12 0.0000000000000000000000000000000000000000000009787 172.0
YYD3_k127_1069017_18 FtsZ-dependent cytokinesis - - - 0.000000000000000000000000000000000004691 146.0
YYD3_k127_1069017_19 FixH - - - 0.000000000000000000000000000006914 127.0
YYD3_k127_1069017_2 COG2217 Cation transport ATPase K01533 - 3.6.3.4 2.234e-275 869.0
YYD3_k127_1069017_20 cytochrome oxidase maturation protein - - - 0.00000000000002807 78.0
YYD3_k127_1069017_21 PFAM Cbb3-type cytochrome oxidase component K00407 - - 0.00000000001548 65.0
YYD3_k127_1069017_22 - - - - 0.00000003359 62.0
YYD3_k127_1069017_3 phenylacetic acid degradation protein paaN - - - 1.181e-226 716.0
YYD3_k127_1069017_4 Nitrogen fixation protein fixG - - - 2.554e-202 640.0
YYD3_k127_1069017_5 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 576.0
YYD3_k127_1069017_6 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 393.0
YYD3_k127_1069017_7 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 389.0
YYD3_k127_1069017_8 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007974 379.0
YYD3_k127_1069017_9 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007581 350.0
YYD3_k127_1099700_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 2350.0
YYD3_k127_1099700_1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 8.098e-237 741.0
YYD3_k127_1099700_10 COG4584 Transposase and inactivated derivatives - - - 0.0000000000000000000000005315 109.0
YYD3_k127_1099700_11 SNARE associated Golgi protein - - - 0.000000000000000000003165 102.0
YYD3_k127_1099700_12 Exopolysaccharide synthesis ExoD - - - 0.000000000000000000003355 105.0
YYD3_k127_1099700_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005005 456.0
YYD3_k127_1099700_3 ABC transporter, ATP-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 422.0
YYD3_k127_1099700_4 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 405.0
YYD3_k127_1099700_5 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 374.0
YYD3_k127_1099700_6 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 355.0
YYD3_k127_1099700_7 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 316.0
YYD3_k127_1099700_8 OstA-like protein K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000008189 247.0
YYD3_k127_1099700_9 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000000000000000000000001538 201.0
YYD3_k127_1152641_0 Zn-dependent protease, contains TPR repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 453.0
YYD3_k127_1161112_0 Adenylate and Guanylate cyclase catalytic domain - - - 1.104e-263 830.0
YYD3_k127_1161112_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005771 528.0
YYD3_k127_1161112_2 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 409.0
YYD3_k127_1161112_3 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 415.0
YYD3_k127_1161112_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 334.0
YYD3_k127_1161112_5 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 300.0
YYD3_k127_1161112_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 308.0
YYD3_k127_1161112_7 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003661 268.0
YYD3_k127_1161112_8 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000267 121.0
YYD3_k127_118385_0 PFAM AMP-dependent synthetase and ligase K04110 - 6.2.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 559.0
YYD3_k127_118385_1 benzoyl-CoA oxygenase K15511 - 1.14.13.208 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 509.0
YYD3_k127_118385_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 501.0
YYD3_k127_118385_3 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 440.0
YYD3_k127_118385_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 353.0
YYD3_k127_118385_5 Branched-chain amino acid ATP-binding cassette transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 339.0
YYD3_k127_118385_6 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 331.0
YYD3_k127_118385_7 PFAM ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 316.0
YYD3_k127_118385_8 Coenzyme A transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002415 278.0
YYD3_k127_118385_9 - - - - 0.0000000000000000000000000000000000000000000001338 174.0
YYD3_k127_1195976_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K03520 - 1.2.5.3 0.0 1431.0
YYD3_k127_1195976_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 1.917e-224 754.0
YYD3_k127_1195976_10 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003223 227.0
YYD3_k127_1195976_11 Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - - 0.0000000000000000000000000000000000000000000000000000000002205 208.0
YYD3_k127_1195976_12 cheY-homologous receiver domain K11443 - - 0.0000000000000000000000000000000000000000000000000000004029 201.0
YYD3_k127_1195976_13 Peptidase S24-like - - - 0.00000000000000000000000000000001529 133.0
YYD3_k127_1195976_14 - - - - 0.000000000000000000009907 97.0
YYD3_k127_1195976_2 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 469.0
YYD3_k127_1195976_3 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 463.0
YYD3_k127_1195976_4 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 451.0
YYD3_k127_1195976_5 VWA domain containing CoxE-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 439.0
YYD3_k127_1195976_6 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 416.0
YYD3_k127_1195976_7 Carbon monoxide dehydrogenase operon C protein K21696 GO:0006355,GO:0006808,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 372.0
YYD3_k127_1195976_8 COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 364.0
YYD3_k127_1195976_9 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 285.0
YYD3_k127_1222912_0 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 415.0
YYD3_k127_1222912_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 343.0
YYD3_k127_1222912_2 Predicted permease YjgP/YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 333.0
YYD3_k127_1222912_3 Chaperone SurA K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 333.0
YYD3_k127_1222912_4 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 304.0
YYD3_k127_1222912_5 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000008938 139.0
YYD3_k127_1236435_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 7.232e-229 722.0
YYD3_k127_1236435_1 Belongs to the DNA photolyase family K01669 - 4.1.99.3 5.523e-196 622.0
YYD3_k127_1236435_10 Aminoglycoside 3-N-acetyltransferase - - - 0.000000000000000000000000000818 125.0
YYD3_k127_1236435_11 Parallel beta-helix repeats - - - 0.0000000000000000000000001847 121.0
YYD3_k127_1236435_12 PRC-barrel domain - - - 0.0000000000000000003985 96.0
YYD3_k127_1236435_13 Pkd domain containing protein - - - 0.000000001257 72.0
YYD3_k127_1236435_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 556.0
YYD3_k127_1236435_3 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008355 398.0
YYD3_k127_1236435_4 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000887 375.0
YYD3_k127_1236435_5 NAD-dependent epimerase dehydratase K01784,K08678,K12454 - 4.1.1.35,5.1.3.10,5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 365.0
YYD3_k127_1236435_6 C-terminal domain of 1-Cys peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 349.0
YYD3_k127_1236435_7 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003964 280.0
YYD3_k127_1236435_8 NAD FAD-binding protein K06954 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004881 274.0
YYD3_k127_1236435_9 Sirohaem biosynthesis protein central K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000000001534 174.0
YYD3_k127_1241428_0 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA - - - 4.591e-288 903.0
YYD3_k127_1241428_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000001939 266.0
YYD3_k127_1243302_0 PFAM Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 537.0
YYD3_k127_1243302_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 417.0
YYD3_k127_1243302_2 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001678 241.0
YYD3_k127_1243302_3 Transcriptional regulator K09017 - - 0.00000000000000000000000000000000000000000000000000001814 196.0
YYD3_k127_1243302_4 - - - - 0.0000000000000000000000000006644 119.0
YYD3_k127_1243302_5 Belongs to the GST superfamily K11209 - - 0.000000000000000000004305 94.0
YYD3_k127_1246511_0 Proton-conducting membrane transporter - - - 1.601e-240 763.0
YYD3_k127_1246511_1 Proton-conducting membrane transporter K12141 - - 4.155e-212 668.0
YYD3_k127_1246511_10 Phenylacetic acid catabolic protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 356.0
YYD3_k127_1246511_11 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232 340.0
YYD3_k127_1246511_12 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 328.0
YYD3_k127_1246511_13 COG4237 Hydrogenase 4 membrane component (E) K12140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 288.0
YYD3_k127_1246511_14 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000001178 128.0
YYD3_k127_1246511_15 - - - - 0.00000000000000000000000003183 115.0
YYD3_k127_1246511_16 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000888 81.0
YYD3_k127_1246511_2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 3.288e-205 652.0
YYD3_k127_1246511_3 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 503.0
YYD3_k127_1246511_4 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 494.0
YYD3_k127_1246511_5 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 465.0
YYD3_k127_1246511_6 oxidoreductase FAD NAD(P)-binding domain protein K14581 - 1.18.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008494 436.0
YYD3_k127_1246511_7 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 426.0
YYD3_k127_1246511_8 COG1840 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 415.0
YYD3_k127_1246511_9 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 411.0
YYD3_k127_1247202_0 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 604.0
YYD3_k127_1247202_1 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 461.0
YYD3_k127_1247202_10 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001855 275.0
YYD3_k127_1247202_11 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000005839 254.0
YYD3_k127_1247202_12 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000007168 195.0
YYD3_k127_1247202_13 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.0000000000000000000000000000000000004065 143.0
YYD3_k127_1247202_14 ABC-type spermidine putrescine transport system, permease component I K11075 - - 0.00000003861 56.0
YYD3_k127_1247202_2 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 427.0
YYD3_k127_1247202_3 Required for the activity of the bacterial periplasmic transport system of putrescine K11069,K11073 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 409.0
YYD3_k127_1247202_4 Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 394.0
YYD3_k127_1247202_5 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 380.0
YYD3_k127_1247202_6 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 341.0
YYD3_k127_1247202_7 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 331.0
YYD3_k127_1247202_8 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 304.0
YYD3_k127_1247202_9 KR domain K00034 - 1.1.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000598 298.0
YYD3_k127_1282637_0 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 499.0
YYD3_k127_1282637_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 420.0
YYD3_k127_1282637_2 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000005189 229.0
YYD3_k127_1329388_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1054.0
YYD3_k127_1329388_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 6.114e-225 704.0
YYD3_k127_1329388_10 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000003346 222.0
YYD3_k127_1329388_11 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000000000000000000000000000000001209 202.0
YYD3_k127_1329388_12 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000003863 190.0
YYD3_k127_1329388_13 Phosphohistidine phosphatase SixA K08296 - - 0.000000000000000000000000000000000000004618 151.0
YYD3_k127_1329388_14 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000009694 143.0
YYD3_k127_1329388_2 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 541.0
YYD3_k127_1329388_3 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 488.0
YYD3_k127_1329388_4 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 476.0
YYD3_k127_1329388_5 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 380.0
YYD3_k127_1329388_6 CYTH - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 310.0
YYD3_k127_1329388_7 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003083 274.0
YYD3_k127_1329388_8 Uncharacterized protein conserved in bacteria (DUF2066) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001091 258.0
YYD3_k127_1329388_9 COG0593 ATPase involved in DNA replication initiation - - - 0.00000000000000000000000000000000000000000000000000000000000000001149 231.0
YYD3_k127_1340153_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1127.0
YYD3_k127_1340153_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001022 247.0
YYD3_k127_1340153_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000001781 229.0
YYD3_k127_1340153_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000006643 82.0
YYD3_k127_135343_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 511.0
YYD3_k127_135343_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 356.0
YYD3_k127_135343_2 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 347.0
YYD3_k127_135343_3 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 338.0
YYD3_k127_135343_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003544 327.0
YYD3_k127_135343_5 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007343 277.0
YYD3_k127_135343_6 Putative bacterial sensory transduction regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008971 240.0
YYD3_k127_135343_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000005537 119.0
YYD3_k127_135343_8 Membrane fusogenic activity K09806 - - 0.000000000000000001067 93.0
YYD3_k127_136371_0 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 369.0
YYD3_k127_136371_1 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 308.0
YYD3_k127_136371_2 Carbonic anhydrase K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004778 278.0
YYD3_k127_136371_3 Belongs to the GST superfamily K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000103 247.0
YYD3_k127_136371_4 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000000000000000000000000000000000000000001266 201.0
YYD3_k127_136371_5 CHRD domain - - - 0.0000000000000000000000000000000000005904 147.0
YYD3_k127_1392051_0 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 428.0
YYD3_k127_1392051_1 Belongs to the enoyl-CoA hydratase isomerase family K01692,K11264 - 4.1.1.41,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 391.0
YYD3_k127_1392051_2 With different specificities (related to short-chain alcohol - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 352.0
YYD3_k127_1392051_3 Phage plasmid primase P4 family K06919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 346.0
YYD3_k127_1392051_4 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000554 297.0
YYD3_k127_1392051_5 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005803 297.0
YYD3_k127_1392051_6 III protein, CoA-transferase family - - - 0.0000000000000000000000000000000000000000000001588 170.0
YYD3_k127_1417641_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008515 453.0
YYD3_k127_1417641_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 444.0
YYD3_k127_1417641_2 Chain length determinant protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 354.0
YYD3_k127_1417641_3 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001465 250.0
YYD3_k127_1417641_4 PFAM CobQ CobB MinD ParA nucleotide binding domain - - - 0.0000000000007383 74.0
YYD3_k127_1465943_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 608.0
YYD3_k127_1465943_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 563.0
YYD3_k127_1465943_10 acid transport K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 431.0
YYD3_k127_1465943_11 PFAM ABC transporter K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 424.0
YYD3_k127_1465943_12 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 369.0
YYD3_k127_1465943_13 sulfate adenylyltransferase (ATP) activity K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 369.0
YYD3_k127_1465943_14 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003363 344.0
YYD3_k127_1465943_15 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 332.0
YYD3_k127_1465943_16 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 300.0
YYD3_k127_1465943_17 Binding-protein-dependent transport system inner membrane component K02029,K10019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 295.0
YYD3_k127_1465943_18 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003642 276.0
YYD3_k127_1465943_19 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005119 282.0
YYD3_k127_1465943_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 537.0
YYD3_k127_1465943_20 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005646 270.0
YYD3_k127_1465943_21 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005286 259.0
YYD3_k127_1465943_22 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004408 244.0
YYD3_k127_1465943_23 COG0725 ABC-type molybdate transport system, periplasmic component K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000000002801 244.0
YYD3_k127_1465943_24 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000000000002073 227.0
YYD3_k127_1465943_25 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000004472 199.0
YYD3_k127_1465943_26 COG3267 Type II secretory pathway, component ExeA K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000006611 151.0
YYD3_k127_1465943_27 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.00000000000000000000000000001518 123.0
YYD3_k127_1465943_28 - - - - 0.00000000000007489 79.0
YYD3_k127_1465943_29 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.000000000001517 81.0
YYD3_k127_1465943_3 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009131 528.0
YYD3_k127_1465943_4 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 526.0
YYD3_k127_1465943_5 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009201 504.0
YYD3_k127_1465943_6 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01760 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 482.0
YYD3_k127_1465943_7 acid transport system permease K09970 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 478.0
YYD3_k127_1465943_8 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 465.0
YYD3_k127_1465943_9 Adenylylsulphate kinase K00955 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 453.0
YYD3_k127_1471460_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 3.004e-262 824.0
YYD3_k127_1471460_1 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 430.0
YYD3_k127_1471460_2 transcriptional regulators K22042 - - 0.000000000000000000000000000006971 122.0
YYD3_k127_1515518_0 N-methylhydantoinase B acetone carboxylase, alpha subunit K01474 - 3.5.2.14 5.974e-280 869.0
YYD3_k127_1515518_1 N-methylhydantoinase A acetone carboxylase, beta subunit K01473 - 3.5.2.14 7.739e-279 872.0
YYD3_k127_1515518_10 Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 467.0
YYD3_k127_1515518_11 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 462.0
YYD3_k127_1515518_12 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005707 477.0
YYD3_k127_1515518_13 2-oxoacid dehydrogenases acyltransferase (catalytic domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 441.0
YYD3_k127_1515518_14 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007985 430.0
YYD3_k127_1515518_15 Dehydrogenase E1 component K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 427.0
YYD3_k127_1515518_16 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 394.0
YYD3_k127_1515518_17 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 392.0
YYD3_k127_1515518_18 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 394.0
YYD3_k127_1515518_19 S-Adenosylmethionine synthetase K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 376.0
YYD3_k127_1515518_2 His Kinase A (phosphoacceptor) domain - - - 9.733e-263 844.0
YYD3_k127_1515518_20 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009502 361.0
YYD3_k127_1515518_21 Isocitrate lyase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 367.0
YYD3_k127_1515518_22 amino acid K01996,K11958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 323.0
YYD3_k127_1515518_23 abc transporter K01995,K10822 - 3.6.3.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 302.0
YYD3_k127_1515518_24 COG0811 Biopolymer transport proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 302.0
YYD3_k127_1515518_25 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 300.0
YYD3_k127_1515518_26 Isochorismatase family K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 284.0
YYD3_k127_1515518_27 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001041 288.0
YYD3_k127_1515518_28 Secreted protein, containing von Willebrand factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006062 295.0
YYD3_k127_1515518_29 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005619 267.0
YYD3_k127_1515518_3 Belongs to the RtcB family K14415,K18148 - 6.5.1.3 1.494e-212 669.0
YYD3_k127_1515518_30 von Willebrand factor (VWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006471 270.0
YYD3_k127_1515518_31 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000117 259.0
YYD3_k127_1515518_32 UTRA K03710 - - 0.00000000000000000000000000000000000000000000000000000000000000000001972 245.0
YYD3_k127_1515518_33 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000004375 233.0
YYD3_k127_1515518_34 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000001442 234.0
YYD3_k127_1515518_35 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000006212 219.0
YYD3_k127_1515518_36 - - - - 0.00000000000000000000000000000000000000000000000000000000000123 227.0
YYD3_k127_1515518_37 Response regulator receiver K11443 - - 0.00000000000000000000000000000000000000000000000000000000003011 208.0
YYD3_k127_1515518_38 'Cold-shock' DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000002784 192.0
YYD3_k127_1515518_39 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000002482 188.0
YYD3_k127_1515518_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 1.864e-195 623.0
YYD3_k127_1515518_40 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000003931 200.0
YYD3_k127_1515518_41 BON domain - - - 0.00000000000000000000000000000000000000000000002845 179.0
YYD3_k127_1515518_42 Haemolysin-III related K11068 - - 0.000000000000000000000000000000000000000000001639 179.0
YYD3_k127_1515518_43 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000004616 163.0
YYD3_k127_1515518_44 Protein of unknown function (DUF3775) - - - 0.0000000000000000000000000000000000000000187 157.0
YYD3_k127_1515518_45 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000004013 169.0
YYD3_k127_1515518_46 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000007469 149.0
YYD3_k127_1515518_47 - - - - 0.00000000000000000000005125 102.0
YYD3_k127_1515518_48 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000004776 89.0
YYD3_k127_1515518_49 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000009455 93.0
YYD3_k127_1515518_5 FAD dependent oxidoreductase K00244 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 574.0
YYD3_k127_1515518_50 Protein of unknown function (DUF4242) - - - 0.00000000000000004201 83.0
YYD3_k127_1515518_51 Polysaccharide deacetylase - - - 0.0000000000000001657 83.0
YYD3_k127_1515518_52 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions - - - 0.00000000000004047 73.0
YYD3_k127_1515518_53 AMP binding - - - 0.0000000000001072 78.0
YYD3_k127_1515518_54 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000002637 77.0
YYD3_k127_1515518_55 - - - - 0.0000007423 60.0
YYD3_k127_1515518_56 EF hand - - - 0.0004539 52.0
YYD3_k127_1515518_6 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 511.0
YYD3_k127_1515518_7 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 504.0
YYD3_k127_1515518_8 Extracellular liganD-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 486.0
YYD3_k127_1515518_9 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006955 468.0
YYD3_k127_1538582_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 508.0
YYD3_k127_1538582_1 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 497.0
YYD3_k127_1538582_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 428.0
YYD3_k127_1538582_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 406.0
YYD3_k127_1538582_4 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009026 385.0
YYD3_k127_1538582_5 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 388.0
YYD3_k127_1538582_6 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 338.0
YYD3_k127_1538582_7 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003335 251.0
YYD3_k127_1538582_8 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000001545 215.0
YYD3_k127_1538582_9 FG-GAP repeat - - - 0.0000000000000000000000000000000000000000000000000677 188.0
YYD3_k127_1538762_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 2.888e-278 862.0
YYD3_k127_1538762_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 1.574e-258 801.0
YYD3_k127_1538762_10 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 9.862e-202 637.0
YYD3_k127_1538762_11 Psort location Cytoplasmic, score 7.50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004244 559.0
YYD3_k127_1538762_12 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 543.0
YYD3_k127_1538762_13 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 512.0
YYD3_k127_1538762_14 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 507.0
YYD3_k127_1538762_15 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 498.0
YYD3_k127_1538762_16 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 506.0
YYD3_k127_1538762_17 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006464 486.0
YYD3_k127_1538762_18 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 459.0
YYD3_k127_1538762_19 Belongs to the KdsA family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 457.0
YYD3_k127_1538762_2 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 3.109e-251 797.0
YYD3_k127_1538762_20 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 436.0
YYD3_k127_1538762_21 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 437.0
YYD3_k127_1538762_22 TRAP transporter solute receptor TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005548 427.0
YYD3_k127_1538762_23 3-Hydroxyisobutyrate dehydrogenase K00020,K00042 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 376.0
YYD3_k127_1538762_24 Amino-transferase class IV K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 370.0
YYD3_k127_1538762_25 DNA polymerase III subunit delta K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005188 364.0
YYD3_k127_1538762_26 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 328.0
YYD3_k127_1538762_27 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 328.0
YYD3_k127_1538762_28 Belongs to the short-chain dehydrogenases reductases (SDR) family K16066 - 1.1.1.381 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006724 332.0
YYD3_k127_1538762_29 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 313.0
YYD3_k127_1538762_3 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 5.122e-246 779.0
YYD3_k127_1538762_30 Succinylglutamate desuccinylase aspartoacylase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 309.0
YYD3_k127_1538762_31 Beta-lactamase superfamily domain K06167 - 3.1.4.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 295.0
YYD3_k127_1538762_32 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005989 267.0
YYD3_k127_1538762_33 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000007396 244.0
YYD3_k127_1538762_34 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000005934 237.0
YYD3_k127_1538762_35 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000004204 244.0
YYD3_k127_1538762_36 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.000000000000000000000000000000000000000000000000000000000000000009594 228.0
YYD3_k127_1538762_37 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000414 188.0
YYD3_k127_1538762_38 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000002418 181.0
YYD3_k127_1538762_39 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000009621 151.0
YYD3_k127_1538762_4 transport system fused permease components - - - 2.079e-244 771.0
YYD3_k127_1538762_40 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000000001381 150.0
YYD3_k127_1538762_41 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000000134 153.0
YYD3_k127_1538762_42 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000003558 116.0
YYD3_k127_1538762_43 Septum formation initiator - - - 0.0000000000000000000000001097 109.0
YYD3_k127_1538762_44 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000007014 101.0
YYD3_k127_1538762_45 PAS domain - - - 0.00000000000000365 82.0
YYD3_k127_1538762_46 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000171 78.0
YYD3_k127_1538762_5 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 9.829e-242 754.0
YYD3_k127_1538762_6 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 2.111e-221 696.0
YYD3_k127_1538762_7 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 1.808e-215 681.0
YYD3_k127_1538762_8 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 2.321e-209 659.0
YYD3_k127_1538762_9 Potassium transporter peripheral membrane component K03499 - - 2.167e-203 642.0
YYD3_k127_1601747_0 CoA binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 596.0
YYD3_k127_1601747_1 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 502.0
YYD3_k127_1601747_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 464.0
YYD3_k127_1601747_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 383.0
YYD3_k127_1601747_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 335.0
YYD3_k127_1601747_5 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003285 326.0
YYD3_k127_1602718_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1097.0
YYD3_k127_1602718_1 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 2.71e-239 747.0
YYD3_k127_1602718_10 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000005038 139.0
YYD3_k127_1602718_11 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.00003852 47.0
YYD3_k127_1602718_2 Cysteine-rich domain - - - 1.189e-209 659.0
YYD3_k127_1602718_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 534.0
YYD3_k127_1602718_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 352.0
YYD3_k127_1602718_5 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 252.0
YYD3_k127_1602718_6 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000002024 245.0
YYD3_k127_1602718_7 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000002407 240.0
YYD3_k127_1602718_8 protein conserved in bacteria K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000181 201.0
YYD3_k127_1602718_9 Belongs to the Fur family K09826 - - 0.0000000000000000000000000000000000000000000000000000007994 196.0
YYD3_k127_1636978_0 Catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive - - - 2.649e-293 909.0
YYD3_k127_1636978_1 COG1012 NAD-dependent aldehyde dehydrogenases K13922,K15515 - 1.2.1.81,1.2.1.87 1.36e-238 753.0
YYD3_k127_1636978_2 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 353.0
YYD3_k127_1636978_3 Xylose isomerase domain protein TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 306.0
YYD3_k127_1636978_4 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000005317 168.0
YYD3_k127_1636978_5 HMGL-like K01640 - 4.1.3.4 0.00001274 55.0
YYD3_k127_1674945_0 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 514.0
YYD3_k127_1674945_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 445.0
YYD3_k127_1674945_2 HlyD family K01993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000161 258.0
YYD3_k127_1674945_3 COG0517 FOG CBS domain - - - 0.00000000000000000008763 90.0
YYD3_k127_1709770_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 522.0
YYD3_k127_1709770_1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 351.0
YYD3_k127_1709770_10 RibD C-terminal domain - - - 0.0000000000000000000000008939 105.0
YYD3_k127_1709770_11 - - - - 0.00000001102 66.0
YYD3_k127_1709770_2 sulfuric ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002017 273.0
YYD3_k127_1709770_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000033 248.0
YYD3_k127_1709770_4 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000005297 237.0
YYD3_k127_1709770_5 6-pyruvoyl tetrahydropterin synthase - - - 0.000000000000000000000000000000000000000000000009317 174.0
YYD3_k127_1709770_6 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.00000000000000000000000000000000000000000000005196 179.0
YYD3_k127_1709770_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.00000000000000000000000000000000000000000003269 172.0
YYD3_k127_1709770_8 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000009434 158.0
YYD3_k127_1709770_9 conserved protein, contains double-stranded beta-helix domain - - - 0.00000000000000000000000001599 110.0
YYD3_k127_1714816_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1123.0
YYD3_k127_1714816_1 Amidohydrolase K07045 - - 5.402e-247 771.0
YYD3_k127_1714816_10 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 520.0
YYD3_k127_1714816_11 amp-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 508.0
YYD3_k127_1714816_12 Peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 486.0
YYD3_k127_1714816_13 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K18661 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 492.0
YYD3_k127_1714816_14 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008518 482.0
YYD3_k127_1714816_15 Metal-dependent hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 458.0
YYD3_k127_1714816_16 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 447.0
YYD3_k127_1714816_17 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 430.0
YYD3_k127_1714816_18 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 415.0
YYD3_k127_1714816_19 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 416.0
YYD3_k127_1714816_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.545e-217 681.0
YYD3_k127_1714816_20 Belongs to the DapA family K21062 - 3.5.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004094 415.0
YYD3_k127_1714816_21 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 404.0
YYD3_k127_1714816_22 ABC-type spermidine putrescine transport system, permease component II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 394.0
YYD3_k127_1714816_23 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 385.0
YYD3_k127_1714816_24 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 366.0
YYD3_k127_1714816_25 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007051 350.0
YYD3_k127_1714816_26 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 345.0
YYD3_k127_1714816_27 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 316.0
YYD3_k127_1714816_28 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 316.0
YYD3_k127_1714816_29 isochorismatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 301.0
YYD3_k127_1714816_3 transport system fused permease components - - - 8.501e-212 670.0
YYD3_k127_1714816_30 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004084 278.0
YYD3_k127_1714816_31 Fumarylacetoacetate (FAA) hydrolase family K01617 - 4.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000004346 253.0
YYD3_k127_1714816_32 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001159 244.0
YYD3_k127_1714816_33 COG4665 TRAP-type mannitol chloroaromatic compound transport system small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000001201 235.0
YYD3_k127_1714816_34 COG2346, Truncated hemoglobins K03406,K06886 GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008941,GO:0009056,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016491,GO:0016705,GO:0016708,GO:0017144,GO:0019825,GO:0020012,GO:0020037,GO:0030682,GO:0034641,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043207,GO:0044237,GO:0044248,GO:0044270,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046210,GO:0046906,GO:0048037,GO:0050896,GO:0051213,GO:0051410,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:0075136,GO:0097159,GO:0098754,GO:1901363,GO:1901698,GO:2001057 - 0.0000000000000000000000000000000000000003728 152.0
YYD3_k127_1714816_35 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000003476 140.0
YYD3_k127_1714816_36 - - - - 0.000000001107 65.0
YYD3_k127_1714816_4 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 3.006e-195 628.0
YYD3_k127_1714816_5 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 597.0
YYD3_k127_1714816_6 Proline racemase K12658 - 5.1.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 562.0
YYD3_k127_1714816_7 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 559.0
YYD3_k127_1714816_8 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 559.0
YYD3_k127_1714816_9 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 535.0
YYD3_k127_1725199_0 Predicted Permease Membrane Region K07085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 467.0
YYD3_k127_1725199_1 C4-dicarboxylate ABC transporter substrate-binding protein K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001566 282.0
YYD3_k127_1725199_2 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000000007825 200.0
YYD3_k127_1725199_3 Protein conserved in bacteria - - - 0.00000000000004883 85.0
YYD3_k127_1725199_4 Adenylate cyclase K01768 - 4.6.1.1 0.0000009785 59.0
YYD3_k127_1759397_0 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 0.0 1115.0
YYD3_k127_1759397_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 4.689e-314 990.0
YYD3_k127_1759397_10 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 489.0
YYD3_k127_1759397_11 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 471.0
YYD3_k127_1759397_12 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 431.0
YYD3_k127_1759397_13 Ornithine cyclodeaminase/mu-crystallin family K01750,K19743 - 1.5.1.1,4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007353 407.0
YYD3_k127_1759397_14 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 405.0
YYD3_k127_1759397_15 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 394.0
YYD3_k127_1759397_16 Sarcosine oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 393.0
YYD3_k127_1759397_17 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007095 370.0
YYD3_k127_1759397_18 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K14981 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 364.0
YYD3_k127_1759397_19 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 364.0
YYD3_k127_1759397_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.921e-298 929.0
YYD3_k127_1759397_20 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 333.0
YYD3_k127_1759397_21 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 301.0
YYD3_k127_1759397_22 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 287.0
YYD3_k127_1759397_23 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001405 280.0
YYD3_k127_1759397_24 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001407 252.0
YYD3_k127_1759397_25 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000001828 235.0
YYD3_k127_1759397_26 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000000009336 229.0
YYD3_k127_1759397_27 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.0000000000000000000000000000000000000000000000000000000006466 208.0
YYD3_k127_1759397_28 Probable cobalt transporter subunit (CbtA) - - - 0.00000000000000000000000000000000000000000000000000000001722 207.0
YYD3_k127_1759397_29 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000008269 194.0
YYD3_k127_1759397_3 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.145e-252 786.0
YYD3_k127_1759397_30 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000002768 180.0
YYD3_k127_1759397_31 COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 - - 0.0000000000000000000000000000000000000000003435 163.0
YYD3_k127_1759397_32 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000007688 156.0
YYD3_k127_1759397_33 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000004177 153.0
YYD3_k127_1759397_34 YHS domain protein - - - 0.0000000000000000000000000000000000005238 145.0
YYD3_k127_1759397_35 COG1925 Phosphotransferase system, HPr-related proteins K11189 - - 0.00000000000000000000000001413 113.0
YYD3_k127_1759397_36 2'-5' RNA ligase superfamily - - - 0.0000000000000000001564 95.0
YYD3_k127_1759397_37 Pfam:DUF1049 - - - 0.00000000002218 69.0
YYD3_k127_1759397_4 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 1.247e-223 698.0
YYD3_k127_1759397_5 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 4e-220 698.0
YYD3_k127_1759397_6 PAS PAC domain-containing protein - - - 1.835e-207 666.0
YYD3_k127_1759397_7 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008 602.0
YYD3_k127_1759397_8 Stimulus-sensing domain K14980 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 543.0
YYD3_k127_1759397_9 reductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 511.0
YYD3_k127_1764090_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1149.0
YYD3_k127_1764090_1 Belongs to the peptidase S11 family K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 332.0
YYD3_k127_1764090_2 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000000000000000243 182.0
YYD3_k127_1764090_3 - - - - 0.000000000000000000000000000000000000000006238 165.0
YYD3_k127_1764090_4 Phasin protein - - - 0.000000000000000000000000000000000000005151 150.0
YYD3_k127_1764090_5 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.0000000000000000000006507 101.0
YYD3_k127_1787364_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 5.059e-255 796.0
YYD3_k127_1787364_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.726e-213 670.0
YYD3_k127_1787364_10 Aldehyde-activating protein - - - 0.0000000000000000000000000000000000000000000000008203 178.0
YYD3_k127_1787364_11 Stringent starvation protein B K09985 - - 0.0000000000000000000000000000000000000000000001109 173.0
YYD3_k127_1787364_12 phosphoserine phosphatase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000002854 168.0
YYD3_k127_1787364_13 Bacterial protein of unknown function (DUF899) - - - 0.0000000000000000000000009373 104.0
YYD3_k127_1787364_14 TfoX N-terminal domain K07343 GO:0006355,GO:0006810,GO:0007154,GO:0008150,GO:0009290,GO:0009292,GO:0009294,GO:0009605,GO:0009889,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0015931,GO:0019219,GO:0019222,GO:0030420,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031668,GO:0044087,GO:0044089,GO:0044093,GO:0044764,GO:0048518,GO:0048522,GO:0050657,GO:0050789,GO:0050794,GO:0050896,GO:0051027,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051704,GO:0051716,GO:0060255,GO:0060491,GO:0065007,GO:0065009,GO:0071496,GO:0071702,GO:0071705,GO:0080090,GO:0098657,GO:1903506,GO:1903656,GO:1903658,GO:2000112,GO:2001141 - 0.00000000000000000000001136 111.0
YYD3_k127_1787364_15 Ribbon-helix-helix domain - - - 0.0000000000000000006871 88.0
YYD3_k127_1787364_16 localization factor protein PodJ K07126,K13582 - - 0.0000000000000001981 84.0
YYD3_k127_1787364_18 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00005622 48.0
YYD3_k127_1787364_19 resolvase domain - - - 0.00009136 53.0
YYD3_k127_1787364_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 607.0
YYD3_k127_1787364_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 530.0
YYD3_k127_1787364_4 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007577 479.0
YYD3_k127_1787364_5 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007979 442.0
YYD3_k127_1787364_6 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 314.0
YYD3_k127_1787364_7 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003491 285.0
YYD3_k127_1787364_8 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006814 244.0
YYD3_k127_1787364_9 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000004173 181.0
YYD3_k127_1792914_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.633e-242 760.0
YYD3_k127_1792914_1 TRAP transporter solute receptor TAXI family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 432.0
YYD3_k127_1792914_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000000000000000000001652 227.0
YYD3_k127_1792914_3 Carbon monoxide dehydrogenase subunit G (CoxG) K09386 - - 0.0000000000000000000000000000009113 122.0
YYD3_k127_1800021_0 Aerotolerance regulator N-terminal - - - 5.308e-283 896.0
YYD3_k127_1800021_1 membrane - - - 1.78e-236 752.0
YYD3_k127_1800021_10 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000002325 227.0
YYD3_k127_1800021_11 Protein of unknown function (DUF1285) K09986 - - 0.00000000000000000000000000000000000000000000000000000000002229 215.0
YYD3_k127_1800021_12 Predicted membrane protein (DUF2339) - - - 0.0000000000000000000000000000000000000000000000000000000297 209.0
YYD3_k127_1800021_13 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000002384 199.0
YYD3_k127_1800021_14 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000000000000005076 188.0
YYD3_k127_1800021_15 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0000000000000000000000000000000000001074 151.0
YYD3_k127_1800021_16 DNA-binding transcription factor activity - - - 0.000000000000000000000003419 111.0
YYD3_k127_1800021_17 - - - - 0.000000000006094 75.0
YYD3_k127_1800021_18 LTXXQ motif family protein - - - 0.0007329 49.0
YYD3_k127_1800021_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 1.756e-208 669.0
YYD3_k127_1800021_3 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 516.0
YYD3_k127_1800021_4 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 - 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 456.0
YYD3_k127_1800021_5 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 462.0
YYD3_k127_1800021_6 poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 444.0
YYD3_k127_1800021_7 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009814 363.0
YYD3_k127_1800021_8 Cytochrome C1 family K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 323.0
YYD3_k127_1800021_9 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004493 280.0
YYD3_k127_1838027_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.0 1022.0
YYD3_k127_1838027_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1020.0
YYD3_k127_1838027_10 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 529.0
YYD3_k127_1838027_11 COG0515 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 517.0
YYD3_k127_1838027_12 Binding-protein-dependent transport system inner membrane component K12369 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 501.0
YYD3_k127_1838027_13 COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 495.0
YYD3_k127_1838027_14 Tripartite tricarboxylate transporter TctA K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009963 497.0
YYD3_k127_1838027_15 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005944 468.0
YYD3_k127_1838027_16 Belongs to the ABC transporter superfamily K02031,K12371 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 464.0
YYD3_k127_1838027_17 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 456.0
YYD3_k127_1838027_18 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 480.0
YYD3_k127_1838027_19 2-Hydroxy-3-oxopropionate reductase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 440.0
YYD3_k127_1838027_2 Tripartite tricarboxylate transporter TctA family K07793 - - 2.028e-260 809.0
YYD3_k127_1838027_20 Oligopeptide/dipeptide transporter, C-terminal region K02032,K12372 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 439.0
YYD3_k127_1838027_21 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 431.0
YYD3_k127_1838027_22 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 407.0
YYD3_k127_1838027_23 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034,K12370,K13891 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 407.0
YYD3_k127_1838027_24 Protocatechuate 3,4-dioxygenase beta subunit N terminal K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 398.0
YYD3_k127_1838027_25 homoserine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 398.0
YYD3_k127_1838027_26 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009867 368.0
YYD3_k127_1838027_27 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 373.0
YYD3_k127_1838027_28 Domain of unknown function DUF108 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 346.0
YYD3_k127_1838027_29 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009986 346.0
YYD3_k127_1838027_3 Bacterial extracellular solute-binding proteins, family 5 Middle K12368 - - 1.733e-257 806.0
YYD3_k127_1838027_30 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006493 338.0
YYD3_k127_1838027_31 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 324.0
YYD3_k127_1838027_32 Selenocysteine synthase (Seryl-tRNASer selenium transferase) K01042 - 2.9.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 329.0
YYD3_k127_1838027_33 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 323.0
YYD3_k127_1838027_35 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 306.0
YYD3_k127_1838027_36 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003404 297.0
YYD3_k127_1838027_37 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 300.0
YYD3_k127_1838027_38 Dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 291.0
YYD3_k127_1838027_39 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 288.0
YYD3_k127_1838027_4 belongs to the aldehyde dehydrogenase family K22187 - - 8.686e-234 731.0
YYD3_k127_1838027_40 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001661 287.0
YYD3_k127_1838027_41 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000368 257.0
YYD3_k127_1838027_42 - - - - 0.000000000000000000000000000000000000000000000000000000000000002498 228.0
YYD3_k127_1838027_43 Ankyrin repeats (3 copies) - - - 0.000000000000000000000000000000000000000000000000000000000001443 218.0
YYD3_k127_1838027_44 Hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000001443 218.0
YYD3_k127_1838027_45 SMART protein phosphatase 2C domain protein K01090 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000009863 216.0
YYD3_k127_1838027_46 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000000002715 207.0
YYD3_k127_1838027_47 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000000000000000000000000000000000000000008789 201.0
YYD3_k127_1838027_48 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000005403 198.0
YYD3_k127_1838027_49 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000003611 184.0
YYD3_k127_1838027_5 Cys/Met metabolism PLP-dependent enzyme K01739,K01761 - 2.5.1.48,4.4.1.11 1.279e-200 635.0
YYD3_k127_1838027_50 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K19802 - 5.1.1.20 0.00000000000000000000000000000000000000000000009352 185.0
YYD3_k127_1838027_51 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000001317 138.0
YYD3_k127_1838027_52 transport system small permease component - - - 0.00000000000000000000000000009642 124.0
YYD3_k127_1838027_53 Lysin motif - - - 0.0000000000000000000001951 111.0
YYD3_k127_1838027_54 alpha/beta hydrolase fold - - - 0.00000000000000000005836 94.0
YYD3_k127_1838027_55 UPF0391 membrane protein - - - 0.00000000000001905 74.0
YYD3_k127_1838027_56 Ndr family - - - 0.0000000000005102 84.0
YYD3_k127_1838027_57 Tripartite tricarboxylate transporter TctB family - - - 0.000000003888 67.0
YYD3_k127_1838027_58 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000008368 57.0
YYD3_k127_1838027_59 - - - - 0.00003134 48.0
YYD3_k127_1838027_6 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 591.0
YYD3_k127_1838027_7 amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 573.0
YYD3_k127_1838027_8 Putative serine dehydratase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 534.0
YYD3_k127_1838027_9 Adenylosuccinate lyase C-terminus K01857 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007388 524.0
YYD3_k127_1845041_0 Lysophospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005641 291.0
YYD3_k127_1845041_1 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001001 274.0
YYD3_k127_1874069_0 GTP cyclohydrolase N terminal - - - 1.281e-212 668.0
YYD3_k127_1874069_1 Protein of unknown function (DUF1688) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 502.0
YYD3_k127_1874069_10 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.00000000000000000000000000000000000000000000000000000000000000000002752 236.0
YYD3_k127_1874069_11 NlpE C-terminal OB domain - - - 0.0000000000000000000000000000000000000000000000000000000000001797 229.0
YYD3_k127_1874069_12 Hemimethylated DNA-binding protein YccV like K11940 - - 0.000000000000000000000000000000000000000004013 173.0
YYD3_k127_1874069_14 - - - - 0.000000000000623 73.0
YYD3_k127_1874069_2 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 441.0
YYD3_k127_1874069_3 ATPase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 355.0
YYD3_k127_1874069_4 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 305.0
YYD3_k127_1874069_5 transcriptional regulator K04761 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 309.0
YYD3_k127_1874069_6 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 289.0
YYD3_k127_1874069_7 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005231 291.0
YYD3_k127_1874069_8 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 274.0
YYD3_k127_1874069_9 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004599 254.0
YYD3_k127_1905791_0 ABC-type Fe3 transport system permease component K02011 - - 1.129e-313 975.0
YYD3_k127_1905791_1 Na phosphate symporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 561.0
YYD3_k127_1905791_2 Bacterial extracellular solute-binding protein K02012,K11081 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 533.0
YYD3_k127_1905791_3 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02049 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 482.0
YYD3_k127_1905791_4 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000823 452.0
YYD3_k127_1905791_5 Belongs to the TPP enzyme family K03336 - 3.7.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 436.0
YYD3_k127_1905791_6 Xylose isomerase-like TIM barrel K03335 - 4.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004096 429.0
YYD3_k127_1905791_7 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000001065 201.0
YYD3_k127_1905791_8 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000007775 169.0
YYD3_k127_1981331_0 AAA domain - - - 1.326e-195 636.0
YYD3_k127_1981331_1 NfeD-like C-terminal, partner-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 454.0
YYD3_k127_1981331_2 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 432.0
YYD3_k127_1981331_3 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 353.0
YYD3_k127_1981331_4 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002447 280.0
YYD3_k127_1981331_5 thiamine-containing compound biosynthetic process K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001496 271.0
YYD3_k127_1981331_6 beta-lactamase activity K07126 - - 0.000000000000000000000000000000000000002442 159.0
YYD3_k127_1981661_0 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 3.499e-243 765.0
YYD3_k127_1981661_1 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 469.0
YYD3_k127_1981661_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 453.0
YYD3_k127_1981661_3 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008002 417.0
YYD3_k127_1981661_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 422.0
YYD3_k127_1981661_5 asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 332.0
YYD3_k127_1981661_6 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 315.0
YYD3_k127_1981661_7 hemolysin activation secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002365 286.0
YYD3_k127_1981661_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000015 231.0
YYD3_k127_1981661_9 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000005239 181.0
YYD3_k127_1982989_0 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 7.881e-262 824.0
YYD3_k127_1982989_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 576.0
YYD3_k127_1982989_2 Acyl-CoA dehydrogenase, middle domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004331 497.0
YYD3_k127_1982989_3 AMP-binding enzyme C-terminal domain K00666,K20034 - 6.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 310.0
YYD3_k127_2001944_0 Histidine kinase A domain protein - - - 0.0 1154.0
YYD3_k127_2001944_1 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 594.0
YYD3_k127_2001944_10 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 0.000000000000000000000000000000000000000000000000000001717 194.0
YYD3_k127_2001944_11 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000005698 175.0
YYD3_k127_2001944_12 Ribosomal protein L11 methyltransferase K02687 - - 0.00000002956 61.0
YYD3_k127_2001944_13 - - - - 0.0000001112 61.0
YYD3_k127_2001944_2 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 555.0
YYD3_k127_2001944_3 EXOIII K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 556.0
YYD3_k127_2001944_4 cobalamin synthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007807 439.0
YYD3_k127_2001944_5 Binding-protein-dependent transport system inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 429.0
YYD3_k127_2001944_6 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 422.0
YYD3_k127_2001944_7 Belongs to the ABC transporter superfamily K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 391.0
YYD3_k127_2001944_8 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 326.0
YYD3_k127_2001944_9 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 301.0
YYD3_k127_2046888_0 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 501.0
YYD3_k127_2046888_1 COG1253 Hemolysins and related proteins containing CBS domains K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 315.0
YYD3_k127_2046888_2 transcriptional - - - 0.0000000000000000000000000000000000000000000000001212 183.0
YYD3_k127_2058842_0 Bacterial protein of unknown function (DUF853) K06915 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 526.0
YYD3_k127_2058842_1 Pfam:Kce - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 329.0
YYD3_k127_2058842_2 transporter component K07112 - - 0.0000000000000000000000000000000000000000000483 165.0
YYD3_k127_2058842_3 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000007099 156.0
YYD3_k127_2058842_4 Tetratricopeptide repeat - - - 0.000000000000000000215 102.0
YYD3_k127_2058842_5 homoserine dehydrogenase - - - 0.00002741 48.0
YYD3_k127_2098047_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0 1288.0
YYD3_k127_2098047_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 2.058e-202 643.0
YYD3_k127_2098047_10 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000911 126.0
YYD3_k127_2098047_11 Protein conserved in bacteria K09991 - - 0.0000000000000001708 87.0
YYD3_k127_2098047_12 Histidine kinase K14986 - 2.7.13.3 0.00000179 59.0
YYD3_k127_2098047_2 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 613.0
YYD3_k127_2098047_3 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 437.0
YYD3_k127_2098047_4 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 434.0
YYD3_k127_2098047_5 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 341.0
YYD3_k127_2098047_6 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 322.0
YYD3_k127_2098047_7 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 312.0
YYD3_k127_2098047_8 COG2518 Protein-L-isoaspartate carboxylmethyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000006993 245.0
YYD3_k127_2098047_9 SOS response K14160 - - 0.000000000000000000000000000000000009999 146.0
YYD3_k127_2099116_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 1.023e-301 937.0
YYD3_k127_2099116_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 1.804e-229 715.0
YYD3_k127_2099116_10 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 337.0
YYD3_k127_2099116_11 GMC oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 346.0
YYD3_k127_2099116_12 ATPases associated with a variety of cellular activities K11963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 331.0
YYD3_k127_2099116_13 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 323.0
YYD3_k127_2099116_14 CobW/HypB/UreG, nucleotide-binding domain K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 327.0
YYD3_k127_2099116_15 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001215 259.0
YYD3_k127_2099116_16 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002182 263.0
YYD3_k127_2099116_17 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000001431 244.0
YYD3_k127_2099116_18 Domain of unknown function (DUF4340) - - - 0.000000000000000000000000000000000000000000000000000000000000007586 229.0
YYD3_k127_2099116_19 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.0000000000000000000000000000000000000000000000000000000001594 212.0
YYD3_k127_2099116_2 Periplasmic binding protein domain K11959 - - 8.927e-217 679.0
YYD3_k127_2099116_20 dioxygenase K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000001038 216.0
YYD3_k127_2099116_21 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000001073 192.0
YYD3_k127_2099116_22 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000000002087 174.0
YYD3_k127_2099116_23 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000002414 160.0
YYD3_k127_2099116_24 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.00000000000000000000000000000000000002105 149.0
YYD3_k127_2099116_25 Glycosyl transferase family group 2 K07011 - - 0.00000000000000000000000000000000000103 153.0
YYD3_k127_2099116_26 Ribonuclease B OB domain K03704 - - 0.00000000000000000000000000000002652 132.0
YYD3_k127_2099116_27 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000001473 123.0
YYD3_k127_2099116_28 Protein of unknown function (DUF1622) - - - 0.00000000000000000000000004479 113.0
YYD3_k127_2099116_29 Cold shock K03704 - - 0.0000000000000000000004325 98.0
YYD3_k127_2099116_3 ABC-type uncharacterized transport system - - - 1.299e-206 661.0
YYD3_k127_2099116_31 Trap-type c4-dicarboxylate transport system, small permease component - - - 0.0000000000000000004883 86.0
YYD3_k127_2099116_32 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.000000000002457 78.0
YYD3_k127_2099116_33 Protein of unknown function (FYDLN_acid) - - - 0.00000000008016 66.0
YYD3_k127_2099116_34 - - - - 0.000001351 52.0
YYD3_k127_2099116_35 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00007329 54.0
YYD3_k127_2099116_4 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 535.0
YYD3_k127_2099116_5 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 507.0
YYD3_k127_2099116_6 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 395.0
YYD3_k127_2099116_7 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 368.0
YYD3_k127_2099116_8 ABC transporter K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 351.0
YYD3_k127_2099116_9 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007238 346.0
YYD3_k127_2130153_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.915e-309 954.0
YYD3_k127_2130153_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 3.581e-249 784.0
YYD3_k127_2130153_10 COG1994 Zn-dependent proteases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009403 257.0
YYD3_k127_2130153_11 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000001998 223.0
YYD3_k127_2130153_12 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000003291 167.0
YYD3_k127_2130153_13 - - - - 0.000000000000000000000000000000000000001894 158.0
YYD3_k127_2130153_14 Belongs to the HesB IscA family K15724 - - 0.0000000000000000000000000000000000002524 149.0
YYD3_k127_2130153_15 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000003807 135.0
YYD3_k127_2130153_16 Sporulation related domain - - - 0.00000000000000000000000000000001415 140.0
YYD3_k127_2130153_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000003194 110.0
YYD3_k127_2130153_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000009324 87.0
YYD3_k127_2130153_2 inner membrane component K02011 - - 3.359e-207 658.0
YYD3_k127_2130153_3 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000981 584.0
YYD3_k127_2130153_4 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 537.0
YYD3_k127_2130153_5 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 478.0
YYD3_k127_2130153_6 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 404.0
YYD3_k127_2130153_7 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 387.0
YYD3_k127_2130153_8 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 355.0
YYD3_k127_2130153_9 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007411 330.0
YYD3_k127_2161005_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 322.0
YYD3_k127_2161005_1 phosphoribosylanthranilate isomerase activity K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000305 250.0
YYD3_k127_2161005_2 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000003799 222.0
YYD3_k127_2161005_3 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.00000000000000000000000000000000000000006794 164.0
YYD3_k127_2175677_0 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003651 482.0
YYD3_k127_2175677_1 Belongs to the HpcH HpaI aldolase family K01630,K02510 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0008150,GO:0008152,GO:0016829,GO:0016830,GO:0016832,GO:0044238,GO:0044424,GO:0044464,GO:0071704 4.1.2.20,4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 324.0
YYD3_k127_2175677_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008907 323.0
YYD3_k127_2175677_3 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01029,K01032 GO:0001666,GO:0006950,GO:0008150,GO:0009628,GO:0036293,GO:0050896,GO:0070482 2.8.3.5,2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 314.0
YYD3_k127_2175677_4 Coenzyme A transferase K01031 - 2.8.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599 304.0
YYD3_k127_2175677_5 PFAM thioesterase superfamily protein K07107 - - 0.00000000000000000000000005466 122.0
YYD3_k127_2175677_6 surface antigen - - - 0.0000000000001566 77.0
YYD3_k127_2191830_0 transport system fused permease components - - - 5.562e-194 616.0
YYD3_k127_2191830_1 transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 544.0
YYD3_k127_2191830_2 AMP-binding enzyme C-terminal domain K00666,K20034 - 6.2.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 350.0
YYD3_k127_2216149_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1279.0
YYD3_k127_2216149_1 cell division K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 318.0
YYD3_k127_2216149_2 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000105 231.0
YYD3_k127_2216149_3 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000002663 218.0
YYD3_k127_2216149_4 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000000525 179.0
YYD3_k127_2216149_5 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000008835 171.0
YYD3_k127_2216149_6 TIGRFAM MJ0042 family finger-like protein - - - 0.000000000000000000000001287 114.0
YYD3_k127_2216149_7 Helix-turn-helix XRE-family like proteins - - - 0.0000007855 53.0
YYD3_k127_2216149_8 Tetratricopeptide TPR_2 repeat protein - - - 0.0000743 53.0
YYD3_k127_2286130_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1440.0
YYD3_k127_2286130_1 COG0437 Fe-S-cluster-containing hydrogenase components 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007193 423.0
YYD3_k127_2286130_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 340.0
YYD3_k127_2286130_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 350.0
YYD3_k127_2286130_4 DMSO reductase anchor subunit K21309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 337.0
YYD3_k127_2286130_5 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 317.0
YYD3_k127_2286130_6 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000003348 197.0
YYD3_k127_2286130_7 Belongs to the phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000002775 162.0
YYD3_k127_2294403_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.596e-286 887.0
YYD3_k127_2294403_1 Belongs to the UbiD family K03182 - 4.1.1.98 3.096e-281 869.0
YYD3_k127_2294403_10 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 398.0
YYD3_k127_2294403_11 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 392.0
YYD3_k127_2294403_12 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 414.0
YYD3_k127_2294403_13 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008831 370.0
YYD3_k127_2294403_14 CorA-like Mg2+ transporter protein K03284,K16074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 354.0
YYD3_k127_2294403_15 Glycosyltransferase family 10 (fucosyltransferase) C-term - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 352.0
YYD3_k127_2294403_16 COG1560 Lauroyl myristoyl acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 329.0
YYD3_k127_2294403_17 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 322.0
YYD3_k127_2294403_18 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 325.0
YYD3_k127_2294403_19 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 316.0
YYD3_k127_2294403_2 peptidase U62, modulator of DNA gyrase K03568 - - 7.292e-230 719.0
YYD3_k127_2294403_20 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 314.0
YYD3_k127_2294403_21 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 301.0
YYD3_k127_2294403_22 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001289 278.0
YYD3_k127_2294403_23 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004236 278.0
YYD3_k127_2294403_24 protein conserved in bacteria K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003273 265.0
YYD3_k127_2294403_25 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000456 271.0
YYD3_k127_2294403_26 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000000000002627 258.0
YYD3_k127_2294403_27 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001833 248.0
YYD3_k127_2294403_28 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000000000000000000000000000000000000006087 242.0
YYD3_k127_2294403_29 PFAM Peptidase family M20 M25 M40 K01436 - - 0.00000000000000000000000000000000000000000000000000000000000000000009709 246.0
YYD3_k127_2294403_3 ABC-type multidrug transport system, ATPase and permease K06147,K11085 - - 9.926e-223 708.0
YYD3_k127_2294403_30 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000003459 234.0
YYD3_k127_2294403_31 PFAM CMP dCMP deaminase zinc-binding K01487 - 3.5.4.3 0.00000000000000000000000000000000000000000000000000000000000006014 217.0
YYD3_k127_2294403_32 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000000000000003392 213.0
YYD3_k127_2294403_33 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.00000000000000000000000000000000000000000000000000001048 197.0
YYD3_k127_2294403_34 methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000001586 191.0
YYD3_k127_2294403_35 Protein of unknown function (DUF1295) - - - 0.00000000000000000000000000000000000000000000000584 181.0
YYD3_k127_2294403_36 Protein of unknown function (DUF983) - - - 0.000000000000000000000000000000000000000000297 163.0
YYD3_k127_2294403_37 - - - - 0.00003087 48.0
YYD3_k127_2294403_4 glutamate--cysteine ligase K01919 - 6.3.2.2 2.549e-218 684.0
YYD3_k127_2294403_5 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 3.596e-206 653.0
YYD3_k127_2294403_6 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 617.0
YYD3_k127_2294403_7 Zn-dependent proteases and their inactivated homologs K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004426 568.0
YYD3_k127_2294403_8 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 539.0
YYD3_k127_2294403_9 cytochrome c oxidase K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 423.0
YYD3_k127_237151_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1382.0
YYD3_k127_237151_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1272.0
YYD3_k127_237151_10 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 407.0
YYD3_k127_237151_11 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 413.0
YYD3_k127_237151_12 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 411.0
YYD3_k127_237151_13 COG0437 Fe-S-cluster-containing hydrogenase components 1 K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 390.0
YYD3_k127_237151_14 Sulphur transport K07112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007514 372.0
YYD3_k127_237151_15 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000782 361.0
YYD3_k127_237151_16 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 347.0
YYD3_k127_237151_17 WD domain, G-beta repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 342.0
YYD3_k127_237151_18 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 325.0
YYD3_k127_237151_19 ABC-type tungstate transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 303.0
YYD3_k127_237151_2 4Fe-4S binding domain - - - 4.392e-285 894.0
YYD3_k127_237151_20 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 304.0
YYD3_k127_237151_21 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 295.0
YYD3_k127_237151_22 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 296.0
YYD3_k127_237151_23 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001228 291.0
YYD3_k127_237151_24 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002545 287.0
YYD3_k127_237151_25 protein containing LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003791 280.0
YYD3_k127_237151_26 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000004344 256.0
YYD3_k127_237151_27 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000002372 232.0
YYD3_k127_237151_28 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000001379 230.0
YYD3_k127_237151_29 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000005134 207.0
YYD3_k127_237151_3 signal transduction histidine kinase K13587 - 2.7.13.3 5.398e-249 793.0
YYD3_k127_237151_30 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000002091 202.0
YYD3_k127_237151_31 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000001466 186.0
YYD3_k127_237151_32 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08234 - - 0.000000000000000000000000000000000000000000000000278 179.0
YYD3_k127_237151_33 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.000000000000000000000000000000000000000000163 170.0
YYD3_k127_237151_34 ankyrin repeat K15503 - - 0.00000000000000000000000000000000000001111 158.0
YYD3_k127_237151_35 NfeD-like C-terminal, partner-binding K07340 - - 0.00000000000000000000000000000000000003621 147.0
YYD3_k127_237151_36 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000402 151.0
YYD3_k127_237151_37 Protein of unknown function (DUF3305) - - - 0.0000000000000000000000000000008183 128.0
YYD3_k127_237151_38 Protein of unknown function (DUF1153) - - - 0.00000000000000000000000000007311 119.0
YYD3_k127_237151_39 electron transfer activity K02977,K06927,K08738,K08770 GO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244 6.3.1.14 0.000000000000000000000000001974 119.0
YYD3_k127_237151_4 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 5.308e-224 700.0
YYD3_k127_237151_40 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000002374 114.0
YYD3_k127_237151_41 signal transduction histidine kinase K13588 - - 0.00000000000000000000000105 112.0
YYD3_k127_237151_42 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000444 98.0
YYD3_k127_237151_43 Cytochrome C' - - - 0.000000000000000002199 91.0
YYD3_k127_237151_44 Protein of unknown function (DUF3553) - - - 0.0000000000000002294 84.0
YYD3_k127_237151_45 Protein of unknown function (DUF3306) - - - 0.0000000000000006955 87.0
YYD3_k127_237151_46 Polymer-forming cytoskeletal - - - 0.0000000000000381 76.0
YYD3_k127_237151_47 cytochrome - - - 0.0000000000001665 77.0
YYD3_k127_237151_48 Membrane transport protein MerF K19058 - - 0.000000001542 61.0
YYD3_k127_237151_49 Thioredoxin - - - 0.00006094 49.0
YYD3_k127_237151_5 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 578.0
YYD3_k127_237151_6 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 546.0
YYD3_k127_237151_7 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 443.0
YYD3_k127_237151_8 Bacterial extracellular solute-binding protein K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 421.0
YYD3_k127_237151_9 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009245 419.0
YYD3_k127_2373892_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 3.682e-200 636.0
YYD3_k127_2373892_1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 567.0
YYD3_k127_2373892_2 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 403.0
YYD3_k127_2373892_3 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 378.0
YYD3_k127_2373892_4 COG3540 Phosphodiesterase alkaline phosphatase D K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526 370.0
YYD3_k127_2373892_5 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 326.0
YYD3_k127_2373892_6 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006516 278.0
YYD3_k127_2373892_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000001349 143.0
YYD3_k127_2528937_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 589.0
YYD3_k127_2528937_1 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 419.0
YYD3_k127_2528937_2 BioY family K03523 - - 0.00000000000000000000000000000000000000000000000000000000000000009778 227.0
YYD3_k127_2528937_3 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000002262 193.0
YYD3_k127_2547358_0 Adenylate cyclase - - - 1.023e-243 767.0
YYD3_k127_2547358_1 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 432.0
YYD3_k127_2547358_2 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000564 404.0
YYD3_k127_2547358_3 phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 360.0
YYD3_k127_2547358_4 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000000000002264 117.0
YYD3_k127_2548412_0 heavy metal translocating P-type ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 5.667e-254 808.0
YYD3_k127_2548412_1 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 410.0
YYD3_k127_2548412_2 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 400.0
YYD3_k127_2548412_3 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 319.0
YYD3_k127_2548412_4 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005716 277.0
YYD3_k127_2548412_5 MerR, DNA binding K19591,K19592 - - 0.0000000000000000000000000000000000000000000000007619 179.0
YYD3_k127_2548412_6 Preprotein translocase SecG subunit K03075 - - 0.000000000000000004067 91.0
YYD3_k127_2548412_7 - - - - 0.0000000000000001489 88.0
YYD3_k127_2548412_8 mercury ion transmembrane transporter activity K07213 - - 0.0000000000004809 71.0
YYD3_k127_2548412_9 TOBE domain K11072 - 3.6.3.31 0.0000006047 52.0
YYD3_k127_2571488_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 1.24e-256 821.0
YYD3_k127_2571488_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.141e-211 676.0
YYD3_k127_2571488_10 oxidation-reduction process - - - 0.000000000000000000000000000000000000000000778 162.0
YYD3_k127_2571488_11 Belongs to the Nudix hydrolase family - - - 0.0000000000000000000000000000000000000000271 157.0
YYD3_k127_2571488_12 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000003404 130.0
YYD3_k127_2571488_13 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K05712 - 1.14.13.127 0.0000000000000000000002022 102.0
YYD3_k127_2571488_14 ABC transporter substrate binding protein K01989 - - 0.000000000000000000001394 96.0
YYD3_k127_2571488_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 1.784e-199 657.0
YYD3_k127_2571488_3 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004582 482.0
YYD3_k127_2571488_4 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 486.0
YYD3_k127_2571488_5 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 443.0
YYD3_k127_2571488_6 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 426.0
YYD3_k127_2571488_7 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 336.0
YYD3_k127_2571488_8 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007972 317.0
YYD3_k127_2571488_9 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 315.0
YYD3_k127_2598095_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1133.0
YYD3_k127_2598095_1 PAS fold K01768 - 4.6.1.1 9.608e-263 833.0
YYD3_k127_2598095_10 COG1960 Acyl-CoA dehydrogenases K19966 - 3.13.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005131 397.0
YYD3_k127_2598095_11 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 370.0
YYD3_k127_2598095_12 SMP-30/Gluconolaconase/LRE-like region K14274 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 334.0
YYD3_k127_2598095_13 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 317.0
YYD3_k127_2598095_14 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001836 286.0
YYD3_k127_2598095_15 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000206 279.0
YYD3_k127_2598095_16 COG0784 FOG CheY-like receiver K11443 - - 0.00000000000000000000000000000000000000000000000000000000000000002533 225.0
YYD3_k127_2598095_17 Domain of unknown function (DUF1849) - - - 0.0000000000000000000000000000000000000000000000000000000000003773 221.0
YYD3_k127_2598095_18 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000001289 219.0
YYD3_k127_2598095_19 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000005396 173.0
YYD3_k127_2598095_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 8.242e-234 746.0
YYD3_k127_2598095_20 Protein of unknown function (DUF983) - - - 0.000000000000000000000000000000000009149 139.0
YYD3_k127_2598095_22 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000001602 90.0
YYD3_k127_2598095_23 Adenylate cyclase - - - 0.00000000000000000111 87.0
YYD3_k127_2598095_24 - K07341 - - 0.0000000000000001247 83.0
YYD3_k127_2598095_25 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000001175 55.0
YYD3_k127_2598095_26 - - - - 0.0003834 46.0
YYD3_k127_2598095_3 acyl-CoA transferases carnitine dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 537.0
YYD3_k127_2598095_4 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 533.0
YYD3_k127_2598095_5 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 525.0
YYD3_k127_2598095_6 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 501.0
YYD3_k127_2598095_7 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 440.0
YYD3_k127_2598095_8 MarR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 404.0
YYD3_k127_2598095_9 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 403.0
YYD3_k127_2657258_0 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 514.0
YYD3_k127_2657258_1 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006636 425.0
YYD3_k127_2657258_2 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 412.0
YYD3_k127_2657258_3 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 330.0
YYD3_k127_2657258_4 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000000000000000000000000000000000000003474 218.0
YYD3_k127_2657258_5 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000271 199.0
YYD3_k127_268011_0 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1714.0
YYD3_k127_268011_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.074e-235 739.0
YYD3_k127_268011_10 epimerase - - - 0.000185 46.0
YYD3_k127_268011_2 Polysaccharide biosynthesis protein K13013 - - 2.438e-223 710.0
YYD3_k127_268011_3 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009564 479.0
YYD3_k127_268011_4 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 418.0
YYD3_k127_268011_5 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 383.0
YYD3_k127_268011_6 NYN domain - - - 0.000000000000000000000000000000000000000000000007064 183.0
YYD3_k127_268011_7 ligase and related enzymes - - - 0.0000000000000000000000000000000000001209 157.0
YYD3_k127_268011_8 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000005396 121.0
YYD3_k127_268011_9 Vibrio cholerae RfbT protein - - - 0.000000000000000000003478 103.0
YYD3_k127_2700617_0 orn lys arg decarboxylase K01583 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 558.0
YYD3_k127_2700617_1 Catalyzes the sodium-dependent transport of glutamate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002897 267.0
YYD3_k127_2700617_2 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030,K10001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004921 258.0
YYD3_k127_2705783_0 de-polymerase K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 532.0
YYD3_k127_2705783_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 507.0
YYD3_k127_2705783_2 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007554 443.0
YYD3_k127_2705783_3 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 425.0
YYD3_k127_2705783_4 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 404.0
YYD3_k127_2705783_5 protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000009393 194.0
YYD3_k127_2705783_6 Precorrin-6x reductase CbiJ/CobK K05895 - 1.3.1.106,1.3.1.54 0.0000000000000000000000000002194 119.0
YYD3_k127_2705783_7 4Fe-4S single cluster domain of Ferredoxin I - - - 0.000000000000000001287 89.0
YYD3_k127_2746066_0 Adenylate cyclase - - - 1.949e-222 703.0
YYD3_k127_2746066_1 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 593.0
YYD3_k127_2746066_2 COG3540 Phosphodiesterase alkaline phosphatase D K01113 - 3.1.3.1 0.0000000000000000000000000000000003814 137.0
YYD3_k127_2746066_3 Transcriptional regulator - - - 0.000000003915 64.0
YYD3_k127_2746066_4 PFAM Extensin family protein - - - 0.0001671 49.0
YYD3_k127_2752523_0 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 447.0
YYD3_k127_2752523_1 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 417.0
YYD3_k127_2752523_2 Pfam:AmoA K07120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 338.0
YYD3_k127_2752523_3 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000005288 232.0
YYD3_k127_2752523_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000001169 159.0
YYD3_k127_2756990_0 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007609 459.0
YYD3_k127_2756990_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00758 - 2.4.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007776 454.0
YYD3_k127_2756990_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 342.0
YYD3_k127_2756990_3 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000191 292.0
YYD3_k127_2756990_4 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000004842 256.0
YYD3_k127_2756990_5 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000000000000000000000000000000000000000000000002105 179.0
YYD3_k127_2809518_0 Succinyl-CoA ligase like flavodoxin domain - - - 0.0 1345.0
YYD3_k127_2809518_1 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 2.671e-252 792.0
YYD3_k127_2809518_10 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001548 263.0
YYD3_k127_2809518_11 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000002593 201.0
YYD3_k127_2809518_12 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000004552 169.0
YYD3_k127_2809518_13 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000000000001367 156.0
YYD3_k127_2809518_14 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000006992 153.0
YYD3_k127_2809518_15 ETC complex I subunit conserved region - - - 0.000000000000000000000000000004812 121.0
YYD3_k127_2809518_16 - - - - 0.0000000000000002858 83.0
YYD3_k127_2809518_2 protein conserved in bacteria K07793 - - 5.316e-239 746.0
YYD3_k127_2809518_3 ATP citrate lyase citrate-binding - - - 9.294e-222 705.0
YYD3_k127_2809518_4 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 507.0
YYD3_k127_2809518_5 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K15598 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 413.0
YYD3_k127_2809518_6 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 384.0
YYD3_k127_2809518_7 ABC transporter K15600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 303.0
YYD3_k127_2809518_8 COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component K15599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 295.0
YYD3_k127_2809518_9 PFAM O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005061 284.0
YYD3_k127_2811928_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 486.0
YYD3_k127_2811928_1 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 376.0
YYD3_k127_2811928_2 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 366.0
YYD3_k127_2811928_3 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 311.0
YYD3_k127_2811928_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002086 262.0
YYD3_k127_2811928_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000007681 228.0
YYD3_k127_2811928_6 Phenazine biosynthesis-like protein K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000000000000005826 227.0
YYD3_k127_2811928_7 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.0000000000000000002025 90.0
YYD3_k127_2811928_8 Domain of unknown function (DUF1127) - - - 0.00000004968 57.0
YYD3_k127_2813219_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 565.0
YYD3_k127_2813219_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 432.0
YYD3_k127_2813219_2 Cobalamin-independent synthase, Catalytic domain K00549,K22363 - 2.1.1.14,4.4.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008116 367.0
YYD3_k127_2813219_3 17 kDa outer membrane surface antigen - - - 0.00000000000000000000000000000000000000000000000000008295 190.0
YYD3_k127_2813219_4 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000001101 64.0
YYD3_k127_2821784_0 Formate dehydrogenase subunit alpha - - - 0.0 1436.0
YYD3_k127_2821784_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 3.954e-308 959.0
YYD3_k127_2821784_10 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007651 417.0
YYD3_k127_2821784_11 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151 413.0
YYD3_k127_2821784_12 Belongs to the amidase family K01426,K19795 - 3.5.1.4,3.5.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006756 389.0
YYD3_k127_2821784_13 TRAP transporter solute receptor TAXI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 382.0
YYD3_k127_2821784_14 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003904 389.0
YYD3_k127_2821784_15 Histidine kinase K07716,K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 321.0
YYD3_k127_2821784_16 amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 302.0
YYD3_k127_2821784_17 Xanthine and CO dehydrogenases maturation factor XdhC CoxF family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004509 278.0
YYD3_k127_2821784_18 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000001681 263.0
YYD3_k127_2821784_19 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001351 248.0
YYD3_k127_2821784_2 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 2.63e-287 895.0
YYD3_k127_2821784_20 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008881 245.0
YYD3_k127_2821784_21 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase UDP-N-acetylglucosamine-1-phosphate transferase K02851,K13007 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000005665 233.0
YYD3_k127_2821784_22 Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma- L-glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine - - - 0.000000000000000000000000000000000000000000000000001787 196.0
YYD3_k127_2821784_23 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000005665 113.0
YYD3_k127_2821784_3 transport system fused permease components - - - 2.442e-283 883.0
YYD3_k127_2821784_4 Dehydrogenase K00122 - 1.17.1.9 2.55e-280 870.0
YYD3_k127_2821784_5 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.567e-251 790.0
YYD3_k127_2821784_6 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 544.0
YYD3_k127_2821784_7 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 533.0
YYD3_k127_2821784_8 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 499.0
YYD3_k127_2821784_9 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006715 451.0
YYD3_k127_2852611_0 GSCFA domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 424.0
YYD3_k127_2852611_1 - - - - 0.0000000000000000000000000000000000001718 154.0
YYD3_k127_2852611_2 EamA-like transporter family - - - 0.0000000008426 60.0
YYD3_k127_2852611_3 beta-lactamase domain protein - - - 0.000000007456 57.0
YYD3_k127_294829_0 Glycosyltransferase family 28 C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 550.0
YYD3_k127_294829_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 484.0
YYD3_k127_294829_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 417.0
YYD3_k127_294829_3 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000007688 226.0
YYD3_k127_294829_4 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000004064 190.0
YYD3_k127_2965101_0 ABC transporter, substrate-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 612.0
YYD3_k127_2965101_1 AMP-binding enzyme C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 597.0
YYD3_k127_2965101_10 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007931 248.0
YYD3_k127_2965101_11 SapC - - - 0.00000000000000000000000000000000000000000000000000000000000000000002016 241.0
YYD3_k127_2965101_12 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.00000000000000002006 87.0
YYD3_k127_2965101_13 Antibiotic biosynthesis monooxygenase - - - 0.00000000006939 69.0
YYD3_k127_2965101_14 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000003939 58.0
YYD3_k127_2965101_2 MlrC C-terminus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 565.0
YYD3_k127_2965101_3 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 500.0
YYD3_k127_2965101_4 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 510.0
YYD3_k127_2965101_5 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 462.0
YYD3_k127_2965101_6 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 462.0
YYD3_k127_2965101_7 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 360.0
YYD3_k127_2965101_8 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 327.0
YYD3_k127_2965101_9 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000005063 266.0
YYD3_k127_2967301_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1189.0
YYD3_k127_2967301_1 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01895 - 6.2.1.1 2.424e-241 758.0
YYD3_k127_2967301_10 2-hydroxychromene-2-carboxylate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000002018 224.0
YYD3_k127_2967301_11 monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000006566 184.0
YYD3_k127_2967301_12 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000004052 187.0
YYD3_k127_2967301_13 Cupin domain - - - 0.0000000000000000000000000000000000000000000000001976 184.0
YYD3_k127_2967301_14 Protein of unknown function (DUF1489) - - - 0.0000000000000000000000000000000000000001548 155.0
YYD3_k127_2967301_15 Domain of unknown function (DUF4114) - - - 0.000000000000003152 83.0
YYD3_k127_2967301_2 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 2.054e-233 728.0
YYD3_k127_2967301_3 Biotin carboxylase C-terminal domain K01965,K01968,K13777 - 6.4.1.3,6.4.1.4,6.4.1.5 4.561e-228 718.0
YYD3_k127_2967301_4 Aldehyde dehydrogenase family - - - 5.362e-220 695.0
YYD3_k127_2967301_5 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 547.0
YYD3_k127_2967301_6 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 498.0
YYD3_k127_2967301_7 COG0119 Isopropylmalate homocitrate citramalate synthases K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006764 426.0
YYD3_k127_2967301_8 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 394.0
YYD3_k127_2967301_9 N-terminal domain of oxidoreductase K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008113 356.0
YYD3_k127_300784_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038,K21977 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 513.0
YYD3_k127_300784_1 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 513.0
YYD3_k127_300784_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000115 276.0
YYD3_k127_3045378_0 COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases K02230 - 6.6.1.2 0.0 1499.0
YYD3_k127_3045378_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 1.437e-200 636.0
YYD3_k127_3045378_10 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 315.0
YYD3_k127_3045378_11 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001548 286.0
YYD3_k127_3045378_12 PFAM Precorrin-8X methylmutase CbiC CobH K06042 - 5.4.99.60,5.4.99.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000009762 265.0
YYD3_k127_3045378_13 PFAM Response regulator receiver domain K15012 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000003452 252.0
YYD3_k127_3045378_14 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000000000000000002321 230.0
YYD3_k127_3045378_15 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.0000000000000000000000000000000000000000000000000000006697 199.0
YYD3_k127_3045378_16 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000468 193.0
YYD3_k127_3045378_17 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.00000000000000000000000000000000000000000000000004354 189.0
YYD3_k127_3045378_18 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00433,K01055 - 1.11.1.10,3.1.1.24 0.00000000000000000000000000000004345 134.0
YYD3_k127_3045378_2 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004485 487.0
YYD3_k127_3045378_3 Cobalamin synthesis protein cobW C-terminal domain K02234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 456.0
YYD3_k127_3045378_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 433.0
YYD3_k127_3045378_5 CbiX - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 424.0
YYD3_k127_3045378_6 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606,K20997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 380.0
YYD3_k127_3045378_7 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 354.0
YYD3_k127_3045378_8 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005766 356.0
YYD3_k127_3045378_9 Precorrin-6Y C5,15-methyltransferase K00595 - 2.1.1.132 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 334.0
YYD3_k127_3098883_0 transport system fused permease components - - - 0.0 1099.0
YYD3_k127_3098883_1 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 479.0
YYD3_k127_3098883_2 Methyltransferase K06968 - 2.1.1.186 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007374 422.0
YYD3_k127_3098883_3 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000004865 228.0
YYD3_k127_3098883_4 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000001352 216.0
YYD3_k127_3098883_5 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000002499 226.0
YYD3_k127_3098883_6 transcriptional regulator - - - 0.0000000000000000000000000000000003493 138.0
YYD3_k127_3099415_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1250.0
YYD3_k127_3099415_1 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1009.0
YYD3_k127_3099415_10 Belongs to the complex I subunit 6 family K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001194 273.0
YYD3_k127_3099415_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000004637 174.0
YYD3_k127_3099415_12 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000001471 122.0
YYD3_k127_3099415_13 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00002618 48.0
YYD3_k127_3099415_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 7e-239 749.0
YYD3_k127_3099415_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.141e-225 702.0
YYD3_k127_3099415_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 555.0
YYD3_k127_3099415_5 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 535.0
YYD3_k127_3099415_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006876 324.0
YYD3_k127_3099415_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 313.0
YYD3_k127_3099415_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008238 303.0
YYD3_k127_3099415_9 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001128 289.0
YYD3_k127_3125646_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 5.485e-238 740.0
YYD3_k127_3125646_1 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 557.0
YYD3_k127_3125646_2 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007119 559.0
YYD3_k127_3125646_3 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008074 518.0
YYD3_k127_3125646_4 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 422.0
YYD3_k127_3125646_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 348.0
YYD3_k127_3141181_0 ABC transporter transmembrane region K02021 - - 3.069e-298 940.0
YYD3_k127_3141181_1 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 6.588e-247 769.0
YYD3_k127_3141181_10 Alpha beta hydrolase - - - 0.000005001 59.0
YYD3_k127_3141181_2 COG0708 Exonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 365.0
YYD3_k127_3141181_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007401 331.0
YYD3_k127_3141181_4 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 296.0
YYD3_k127_3141181_5 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000004831 194.0
YYD3_k127_3141181_6 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000004271 181.0
YYD3_k127_3141181_7 S-adenosyl-L-methionine methyltransferase - - - 0.00000000000000000000000000000000005995 147.0
YYD3_k127_3141181_8 protein conserved in bacteria K09796 - - 0.00000000000000000000000002037 114.0
YYD3_k127_3141181_9 Pfam:DUF461 K09796 - - 0.00000000006096 69.0
YYD3_k127_314911_0 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005052 489.0
YYD3_k127_314911_1 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000994 351.0
YYD3_k127_314911_2 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000442 311.0
YYD3_k127_314911_3 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000009021 213.0
YYD3_k127_314911_4 periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000000003862 190.0
YYD3_k127_314911_5 RES - - - 0.0000000000000000000000000000000000000000000006979 175.0
YYD3_k127_314911_6 Extensin-like protein C-terminus - - - 0.0000000000000000000000000000000000000000249 155.0
YYD3_k127_314911_7 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000001043 138.0
YYD3_k127_314911_8 Protein of unknown function (DUF2384) - - - 0.000000000000000000000001642 111.0
YYD3_k127_3179540_0 TIGRFAM acetylornithine and succinylornithine aminotransferase K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 520.0
YYD3_k127_3179540_1 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 493.0
YYD3_k127_3179540_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 436.0
YYD3_k127_3179540_3 COG0842 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 360.0
YYD3_k127_3179540_4 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007269 324.0
YYD3_k127_3179540_5 restriction endonuclease K07448 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008355 284.0
YYD3_k127_3179540_6 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000000003928 155.0
YYD3_k127_3179540_7 transcriptional regulator - - - 0.000000000000000000000000000000003 133.0
YYD3_k127_3181495_0 FAD dependent oxidoreductase - - - 0.0 1238.0
YYD3_k127_3181495_1 Adenosine/AMP deaminase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 417.0
YYD3_k127_3181495_2 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 291.0
YYD3_k127_3181495_3 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000001936 272.0
YYD3_k127_3181495_4 PFAM regulatory protein DeoR K02444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001204 252.0
YYD3_k127_3181495_5 radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000001432 253.0
YYD3_k127_3181495_6 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000001248 185.0
YYD3_k127_3181495_7 Transcriptional regulator, TetR family - - - 0.0000000000000000000000000000000000000000000232 168.0
YYD3_k127_3181495_8 PFAM glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000252 142.0
YYD3_k127_3181495_9 DNA-binding transcription factor activity - - - 0.000000000000000000000006211 108.0
YYD3_k127_31942_0 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 490.0
YYD3_k127_31942_1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000975 362.0
YYD3_k127_31942_10 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0003061 43.0
YYD3_k127_31942_2 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 351.0
YYD3_k127_31942_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 319.0
YYD3_k127_31942_4 lipopolysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 313.0
YYD3_k127_31942_5 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001002 265.0
YYD3_k127_31942_6 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002928 252.0
YYD3_k127_31942_7 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000004747 195.0
YYD3_k127_31942_8 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000005965 194.0
YYD3_k127_31942_9 methyltransferase - - - 0.00000008098 59.0
YYD3_k127_3196276_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 7.815e-252 794.0
YYD3_k127_3196276_1 esterase lipase - - - 9.542e-221 735.0
YYD3_k127_3196276_10 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 354.0
YYD3_k127_3196276_11 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001688 278.0
YYD3_k127_3196276_12 Bacterial periplasmic substrate-binding proteins K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006866 290.0
YYD3_k127_3196276_13 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000004946 254.0
YYD3_k127_3196276_14 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003947 245.0
YYD3_k127_3196276_15 COG0765 ABC-type amino acid transport system, permease component K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000004266 241.0
YYD3_k127_3196276_16 Belongs to the thiolase family K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000001861 214.0
YYD3_k127_3196276_17 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000009115 179.0
YYD3_k127_3196276_2 proline dipeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 582.0
YYD3_k127_3196276_3 Binding-protein-dependent transport system inner membrane component K02053,K02054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006537 598.0
YYD3_k127_3196276_4 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003408 544.0
YYD3_k127_3196276_5 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 548.0
YYD3_k127_3196276_6 AMP-binding enzyme K02182 - 6.2.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 511.0
YYD3_k127_3196276_7 fad dependent oxidoreductase K09471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 467.0
YYD3_k127_3196276_8 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 419.0
YYD3_k127_3196276_9 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 358.0
YYD3_k127_3197387_0 FAD binding domain K05712 - 1.14.13.127 1.519e-215 685.0
YYD3_k127_3197387_1 Thiolase, C-terminal domain K00626,K00632,K07823 - 2.3.1.16,2.3.1.174,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009062 585.0
YYD3_k127_3197387_10 phenylacetic acid degradation protein PaaD K02614 GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790 - 0.000000000000000000000000000002805 122.0
YYD3_k127_3197387_11 Protein of unknown function (DUF2783) - - - 0.000000000003915 73.0
YYD3_k127_3197387_12 PD-(D/E)XK nuclease superfamily - - - 0.000000000005295 67.0
YYD3_k127_3197387_13 PD-(D/E)XK nuclease superfamily - - - 0.000003188 52.0
YYD3_k127_3197387_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000723 535.0
YYD3_k127_3197387_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 442.0
YYD3_k127_3197387_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 386.0
YYD3_k127_3197387_5 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004931 358.0
YYD3_k127_3197387_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007836 359.0
YYD3_k127_3197387_7 branched-chain amino acid transport K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 336.0
YYD3_k127_3197387_8 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 332.0
YYD3_k127_3197387_9 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000001916 233.0
YYD3_k127_326295_0 Tripartite tricarboxylate transporter TctA family K07793 - - 2.013e-230 723.0
YYD3_k127_326295_1 MmgE/PrpD family - - - 1.603e-196 646.0
YYD3_k127_326295_2 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 560.0
YYD3_k127_326295_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000694 445.0
YYD3_k127_326295_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01856 - 5.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 372.0
YYD3_k127_326295_5 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005197 329.0
YYD3_k127_326295_6 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007774 263.0
YYD3_k127_326295_7 Tripartite tricarboxylate transporter TctB family - - - 0.000000000001867 73.0
YYD3_k127_3288105_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 2.204e-241 753.0
YYD3_k127_3288105_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 491.0
YYD3_k127_3288105_2 Protein of unknown function (DUF3800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006793 325.0
YYD3_k127_3288105_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001757 278.0
YYD3_k127_3288105_4 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.0000000000000000000001966 103.0
YYD3_k127_3288105_5 restriction endonuclease K07448 - - 0.000000000000000002124 87.0
YYD3_k127_3307862_0 Sulfide dehydrogenase K17229 - 1.8.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 509.0
YYD3_k127_3307862_1 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000752 387.0
YYD3_k127_3307862_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 394.0
YYD3_k127_3307862_3 - - - - 0.00000000000000000000000000000000000000003597 162.0
YYD3_k127_3307862_4 Glutathione S-transferase, N-terminal domain - - - 0.0000000000000000000000000000000003759 141.0
YYD3_k127_3307862_5 Sulphur oxidation protein SoxZ K17227 - - 0.0000000000000000000000000000004129 132.0
YYD3_k127_3307862_6 sulfur oxidation protein (SoxY) K17226 - - 0.00000000000000000000000000002471 124.0
YYD3_k127_3307862_7 Sulphur transport K07112 - - 0.0000000000000000000000001542 107.0
YYD3_k127_3307862_8 cytochrome - - - 0.0000000000000038 83.0
YYD3_k127_3341802_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1219.0
YYD3_k127_3341802_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000005811 124.0
YYD3_k127_3346475_0 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 550.0
YYD3_k127_3346475_1 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 415.0
YYD3_k127_3346475_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007423 353.0
YYD3_k127_3346475_3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 295.0
YYD3_k127_3346475_4 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005893 258.0
YYD3_k127_3346475_5 FCD K11475 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001346 254.0
YYD3_k127_3346475_6 Hemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000000000000000000000000000000000000000000000001492 248.0
YYD3_k127_3346475_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000003856 102.0
YYD3_k127_3353503_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0 1551.0
YYD3_k127_3353503_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 536.0
YYD3_k127_3353503_10 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000002562 121.0
YYD3_k127_3353503_2 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006121 483.0
YYD3_k127_3353503_3 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 474.0
YYD3_k127_3353503_4 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 348.0
YYD3_k127_3353503_5 metal-dependent hydrolase of the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 311.0
YYD3_k127_3353503_6 Protein of unknown function (DUF2848) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001371 283.0
YYD3_k127_3353503_7 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000001411 233.0
YYD3_k127_3353503_8 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000005117 194.0
YYD3_k127_3353503_9 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000000000005764 190.0
YYD3_k127_3426114_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 371.0
YYD3_k127_3426114_1 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 311.0
YYD3_k127_3426114_2 Adenylate cyclase - - - 0.0000000000001996 74.0
YYD3_k127_3426114_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.00001155 48.0
YYD3_k127_3426114_4 His Kinase A (phosphoacceptor) domain - - - 0.0003641 43.0
YYD3_k127_3521933_0 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 419.0
YYD3_k127_3521933_1 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 362.0
YYD3_k127_3521933_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003619 255.0
YYD3_k127_3521933_3 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006455 250.0
YYD3_k127_3521933_4 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000002239 234.0
YYD3_k127_3521933_5 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000004031 231.0
YYD3_k127_3522121_0 ABC-type dipeptide transport system, periplasmic component K02035 - - 6.516e-253 792.0
YYD3_k127_3522121_1 Ketopantoate reductase PanE/ApbA C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004 449.0
YYD3_k127_3522121_2 Creatinine amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 354.0
YYD3_k127_3522121_3 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 341.0
YYD3_k127_3522121_4 Catalyzes the NAD( )-dependent oxidation of L-carnitine to 3-dehydrocarnitine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 346.0
YYD3_k127_3522121_5 helix_turn_helix ASNC type K05800 - - 0.0000000000000000000000000000000000000000000000000000000000000000008714 230.0
YYD3_k127_3522121_6 PFAM acyl-CoA dehydrogenase domain protein - - - 0.00000000000000000000000000000000000000000000000002513 183.0
YYD3_k127_3522121_7 - - - - 0.00000000000001093 80.0
YYD3_k127_3564899_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1330.0
YYD3_k127_3564899_1 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 2.387e-317 988.0
YYD3_k127_3564899_10 Carbon-nitrogen hydrolase K11206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005322 354.0
YYD3_k127_3564899_11 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 346.0
YYD3_k127_3564899_12 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009185 332.0
YYD3_k127_3564899_13 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 305.0
YYD3_k127_3564899_14 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002858 278.0
YYD3_k127_3564899_15 MOSC N-terminal beta barrel domain K07140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003516 271.0
YYD3_k127_3564899_16 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000008688 255.0
YYD3_k127_3564899_17 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000001384 243.0
YYD3_k127_3564899_18 PFAM Methyltransferase type - - - 0.00000000000000000000000000000000000000000000000000000000000000003484 228.0
YYD3_k127_3564899_19 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000004014 220.0
YYD3_k127_3564899_2 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 4.681e-265 826.0
YYD3_k127_3564899_20 Domain of unknown function (DUF4115) K15539 - - 0.0000000000000000000000000000000000000000000000000105 196.0
YYD3_k127_3564899_21 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000000000000007548 152.0
YYD3_k127_3564899_22 AraC-like ligand binding domain - - - 0.000000000000000000000000000000002019 136.0
YYD3_k127_3564899_23 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000001178 123.0
YYD3_k127_3564899_24 Domain of unknown function (DUF4167) - - - 0.0000000000000000000000000159 115.0
YYD3_k127_3564899_3 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.514e-205 645.0
YYD3_k127_3564899_4 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 610.0
YYD3_k127_3564899_5 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 553.0
YYD3_k127_3564899_6 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 521.0
YYD3_k127_3564899_7 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
YYD3_k127_3564899_8 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008004 487.0
YYD3_k127_3564899_9 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 364.0
YYD3_k127_3577123_0 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 7.794e-248 784.0
YYD3_k127_3577123_1 Cobaltochelatase CobS subunit N terminal K09882 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 564.0
YYD3_k127_3577123_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 490.0
YYD3_k127_3577123_3 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 402.0
YYD3_k127_3577123_4 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008091 342.0
YYD3_k127_3577123_5 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000005452 235.0
YYD3_k127_3577123_6 Esterase-like activity of phytase - - - 0.0000000000000000000000000000000000000000000000000000000001721 216.0
YYD3_k127_3577123_7 Molecular chaperone - - - 0.000000000000000000000000000000000000000000000005536 179.0
YYD3_k127_3577123_8 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.000000000000000000000000000000000000008884 149.0
YYD3_k127_3577123_9 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000000000000000000001297 136.0
YYD3_k127_3657490_0 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 530.0
YYD3_k127_3657490_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 377.0
YYD3_k127_3657490_2 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007058 382.0
YYD3_k127_3657490_3 Putrescine transport system permease K11075 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 313.0
YYD3_k127_3657490_4 PFAM binding-protein-dependent transport systems inner membrane component K11070,K11074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 325.0
YYD3_k127_3657490_5 GTP cyclohydrolase K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 308.0
YYD3_k127_3657490_6 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 306.0
YYD3_k127_3657490_7 Spondin_N - - - 0.00000000000000000000000000000000000000000000000000000000000004178 220.0
YYD3_k127_3657490_8 integral membrane protein - - - 0.000000000000000000000000000000000000000001884 161.0
YYD3_k127_3659286_0 Pilus formation protein N terminal region K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 441.0
YYD3_k127_3659286_1 Flp pilus assembly protein RcpC/CpaB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000785 265.0
YYD3_k127_3659286_2 Outer membrane efflux protein K12543 - - 0.000000000000000000000000000000003712 134.0
YYD3_k127_3659286_4 Ribbon-helix-helix domain - - - 0.00000003194 64.0
YYD3_k127_3659286_5 - - - - 0.0005947 49.0
YYD3_k127_3677764_0 adenosylmethionine-8-amino-7-oxononanoate transaminase activity K00822 - 2.6.1.18 3.125e-216 681.0
YYD3_k127_3677764_1 Belongs to the thiolase family K00626 - 2.3.1.9 5.889e-211 661.0
YYD3_k127_3677764_10 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 350.0
YYD3_k127_3677764_11 prephenate dehydrogenase K00220 - 1.3.1.12,1.3.1.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006098 351.0
YYD3_k127_3677764_12 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 341.0
YYD3_k127_3677764_13 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000623 314.0
YYD3_k127_3677764_14 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 308.0
YYD3_k127_3677764_15 methionine biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007068 272.0
YYD3_k127_3677764_16 Polyhydroxyalkanoate synthesis repressor - - - 0.000000000000000000000000000000000000000000000000000000000000000000005804 241.0
YYD3_k127_3677764_17 Cupin superfamily (DUF985) K09705 - - 0.000000000000000000000000000000000000000000000000000000000002415 213.0
YYD3_k127_3677764_18 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000002839 211.0
YYD3_k127_3677764_19 chorismate mutase - - - 0.0000000000000000000000000000000000000000000000000000000001493 216.0
YYD3_k127_3677764_2 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 1.251e-198 628.0
YYD3_k127_3677764_20 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000000000000000000004091 207.0
YYD3_k127_3677764_21 Protein of unknown function (DUF3105) - - - 0.0000000000000000000000000000000000000000000000000006926 191.0
YYD3_k127_3677764_22 Uncharacterized protein conserved in bacteria (DUF2125) - - - 0.00000000000000000000000000000002038 141.0
YYD3_k127_3677764_23 Cysteine-rich CWC - - - 0.000000004009 65.0
YYD3_k127_3677764_3 COG3263 NhaP-type Na H and K H antiporters with a unique C-terminal domain K11105 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 577.0
YYD3_k127_3677764_4 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 566.0
YYD3_k127_3677764_5 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 455.0
YYD3_k127_3677764_6 alpha/beta hydrolase fold K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003034 442.0
YYD3_k127_3677764_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 416.0
YYD3_k127_3677764_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023,K00059 - 1.1.1.100,1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006232 409.0
YYD3_k127_3677764_9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008421 403.0
YYD3_k127_3678845_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 1.435e-204 642.0
YYD3_k127_3678845_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 517.0
YYD3_k127_3678845_10 Alginate lyase - - - 0.000000000000000000000000000009823 132.0
YYD3_k127_3678845_11 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000001336 85.0
YYD3_k127_3678845_12 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000003401 80.0
YYD3_k127_3678845_2 Phytanoyl-CoA dioxygenase (PhyH) K10674 - 1.14.11.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007865 475.0
YYD3_k127_3678845_3 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 431.0
YYD3_k127_3678845_4 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007214 367.0
YYD3_k127_3678845_5 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006003 250.0
YYD3_k127_3678845_6 Asp Glu hydantoin racemase - - - 0.00000000000000000000000000000000000000000000000000001785 195.0
YYD3_k127_3678845_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000002431 190.0
YYD3_k127_3678845_8 COG0346 Lactoylglutathione lyase and related lyases K07032 - - 0.000000000000000000000000000000000000000000000000001211 188.0
YYD3_k127_3678845_9 Putative stress-induced transcription regulator - - - 0.0000000000000000000000000000000000000000000000007115 181.0
YYD3_k127_3734044_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 2.736e-225 709.0
YYD3_k127_3734044_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 478.0
YYD3_k127_3734044_2 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 - 3.5.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000134 277.0
YYD3_k127_3734044_3 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005006 266.0
YYD3_k127_3734044_4 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000000000000000001569 193.0
YYD3_k127_3734044_5 protein conserved in bacteria - - - 0.000000000000000000000000000004776 123.0
YYD3_k127_3754858_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1056.0
YYD3_k127_3754858_1 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 450.0
YYD3_k127_3754858_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 375.0
YYD3_k127_3754858_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 350.0
YYD3_k127_3754858_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000006184 216.0
YYD3_k127_3754858_5 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000002152 186.0
YYD3_k127_3754858_6 Involved in the TonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000009801 161.0
YYD3_k127_3754858_7 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.00000000000000000000000000000000000000002621 162.0
YYD3_k127_3754858_8 - - - - 0.00001349 55.0
YYD3_k127_3762002_0 Precorrin-3B K05934,K13541 - 2.1.1.131,3.7.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 597.0
YYD3_k127_3762002_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 294.0
YYD3_k127_3762002_2 Precorrin-2 K03394 - 2.1.1.130,2.1.1.151 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002065 280.0
YYD3_k127_3762002_3 Tetrapyrrole (Corrin/Porphyrin) Methylases K00595 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.1.1.132 0.000000000000000000000000000000000000000000004295 166.0
YYD3_k127_3764896_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 568.0
YYD3_k127_3764896_1 ATPase (AAA K06923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 431.0
YYD3_k127_3764896_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 328.0
YYD3_k127_3764896_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 301.0
YYD3_k127_3764896_4 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003138 302.0
YYD3_k127_3764896_5 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 295.0
YYD3_k127_3775254_0 FAD linked oxidases, C-terminal domain K18930 - - 0.0 1333.0
YYD3_k127_3775254_1 Belongs to the IlvD Edd family K13875 - 4.2.1.25 2.105e-301 932.0
YYD3_k127_3775254_10 5-aminolevulinic acid synthase K00643 - 2.3.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006511 556.0
YYD3_k127_3775254_11 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 530.0
YYD3_k127_3775254_12 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 535.0
YYD3_k127_3775254_13 ABC transporter K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 517.0
YYD3_k127_3775254_14 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 511.0
YYD3_k127_3775254_15 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 506.0
YYD3_k127_3775254_16 Mannitol dehydrogenase K00040 - 1.1.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 516.0
YYD3_k127_3775254_17 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 505.0
YYD3_k127_3775254_18 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 491.0
YYD3_k127_3775254_19 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007843 478.0
YYD3_k127_3775254_2 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 8.587e-237 748.0
YYD3_k127_3775254_20 N-terminal TM domain of oligopeptide transport permease C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 467.0
YYD3_k127_3775254_21 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 454.0
YYD3_k127_3775254_22 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 439.0
YYD3_k127_3775254_23 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007198 421.0
YYD3_k127_3775254_24 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 398.0
YYD3_k127_3775254_25 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 396.0
YYD3_k127_3775254_26 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 388.0
YYD3_k127_3775254_27 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 375.0
YYD3_k127_3775254_28 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 352.0
YYD3_k127_3775254_29 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 339.0
YYD3_k127_3775254_3 Belongs to the TPP enzyme family K01652 - 2.2.1.6 2.058e-229 723.0
YYD3_k127_3775254_30 Enoyl-(Acyl carrier protein) reductase K00019,K18335 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003806 332.0
YYD3_k127_3775254_31 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 321.0
YYD3_k127_3775254_32 Phosphoribosyl transferase domain K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 308.0
YYD3_k127_3775254_33 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 296.0
YYD3_k127_3775254_34 Belongs to the hyi family K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 286.0
YYD3_k127_3775254_35 Cupin 2, conserved barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001996 261.0
YYD3_k127_3775254_36 Extracellular solute-binding protein, family 5 middle family protein K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001009 252.0
YYD3_k127_3775254_37 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000002479 255.0
YYD3_k127_3775254_38 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000001453 255.0
YYD3_k127_3775254_39 KR domain K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000002335 250.0
YYD3_k127_3775254_4 Bacterial extracellular solute-binding protein K02027 - - 2.885e-222 696.0
YYD3_k127_3775254_40 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000004648 224.0
YYD3_k127_3775254_41 COG1335 Amidases related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000002304 219.0
YYD3_k127_3775254_42 - - - - 0.00000000000000000000000000000000000000000000000000000002239 212.0
YYD3_k127_3775254_43 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000721 203.0
YYD3_k127_3775254_44 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000006263 199.0
YYD3_k127_3775254_45 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000001407 186.0
YYD3_k127_3775254_46 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000003093 165.0
YYD3_k127_3775254_47 6-phosphogluconate dehydrogenase, NAD-binding K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000002386 161.0
YYD3_k127_3775254_48 TOBE domain K02052 - - 0.00000000000000000000000000158 113.0
YYD3_k127_3775254_49 response to cobalt ion - - - 0.000001493 56.0
YYD3_k127_3775254_5 PFAM D-galactarate dehydratase Altronate hydrolase, C terminus K01685 - 4.2.1.7 5.754e-215 679.0
YYD3_k127_3775254_6 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 3.799e-201 637.0
YYD3_k127_3775254_7 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 1.418e-198 625.0
YYD3_k127_3775254_8 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007233 603.0
YYD3_k127_3775254_9 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 586.0
YYD3_k127_3780655_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1037.0
YYD3_k127_3780655_1 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 2.532e-222 694.0
YYD3_k127_3780655_10 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 470.0
YYD3_k127_3780655_11 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009092 466.0
YYD3_k127_3780655_12 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 456.0
YYD3_k127_3780655_13 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 420.0
YYD3_k127_3780655_14 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 390.0
YYD3_k127_3780655_15 Enoyl-CoA hydratase/isomerase K01692,K05605 - 3.1.2.4,4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 387.0
YYD3_k127_3780655_16 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 388.0
YYD3_k127_3780655_17 branched-chain amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 358.0
YYD3_k127_3780655_18 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009959 354.0
YYD3_k127_3780655_19 alpha/beta hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 350.0
YYD3_k127_3780655_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 2.825e-219 686.0
YYD3_k127_3780655_20 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 342.0
YYD3_k127_3780655_21 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000988 253.0
YYD3_k127_3780655_22 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001236 247.0
YYD3_k127_3780655_23 Riboflavin synthase K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000003232 240.0
YYD3_k127_3780655_24 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000003507 216.0
YYD3_k127_3780655_25 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000006798 208.0
YYD3_k127_3780655_26 COG0698 Ribose 5-phosphate isomerase RpiB K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000862 197.0
YYD3_k127_3780655_27 COG1846 Transcriptional regulators - - - 0.0000000000000000000000000000000000000000000000000002532 189.0
YYD3_k127_3780655_28 Belongs to the aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000992 186.0
YYD3_k127_3780655_29 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000000000007331 188.0
YYD3_k127_3780655_3 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007363 587.0
YYD3_k127_3780655_30 ROS/MUCR transcriptional regulator protein - - - 0.00000000000000000000000000000000000000000000000002122 183.0
YYD3_k127_3780655_31 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000000002502 164.0
YYD3_k127_3780655_32 Ubiquinol-cytochrome C chaperone K17662 - - 0.0000000000000000000000000000000000000000001205 168.0
YYD3_k127_3780655_33 transcriptional regulator, MerR - - - 0.0000000000000000000000000000000000000001228 156.0
YYD3_k127_3780655_34 COG2913 Small protein A (tmRNA-binding) - - - 0.00000000000000000000000000000000000009971 149.0
YYD3_k127_3780655_35 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000003065 158.0
YYD3_k127_3780655_36 thioesterase K01075 - 3.1.2.23 0.00000000000000000000000000000000000114 143.0
YYD3_k127_3780655_37 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000002184 150.0
YYD3_k127_3780655_38 - - - - 0.000000000000000000000000000000002043 134.0
YYD3_k127_3780655_39 Uncharacterized ACR, COG1399 - - - 0.00000000000000000000000003075 115.0
YYD3_k127_3780655_4 acyl-CoA transferases carnitine dehydratase K18702 - 2.8.3.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 577.0
YYD3_k127_3780655_40 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000000000000003942 109.0
YYD3_k127_3780655_5 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 550.0
YYD3_k127_3780655_6 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 514.0
YYD3_k127_3780655_7 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
YYD3_k127_3780655_8 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 483.0
YYD3_k127_3780655_9 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 482.0
YYD3_k127_3883618_0 Amidohydrolase family K01464 - 3.5.2.2 1.362e-228 715.0
YYD3_k127_3883618_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.686e-214 674.0
YYD3_k127_3883618_10 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000004359 139.0
YYD3_k127_3883618_11 Domain of unknown function (DUF1476) - - - 0.0000000000000000000000000000006781 126.0
YYD3_k127_3883618_12 Putative zinc- or iron-chelating domain - - - 0.000000000000000000000000006398 122.0
YYD3_k127_3883618_13 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000000008798 109.0
YYD3_k127_3883618_14 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000000000000000003475 90.0
YYD3_k127_3883618_15 Glycosyl transferase - - - 0.000000004918 68.0
YYD3_k127_3883618_16 Ethanolamine utilisation protein EutQ - - - 0.00000001377 63.0
YYD3_k127_3883618_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 446.0
YYD3_k127_3883618_3 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006485 447.0
YYD3_k127_3883618_4 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 344.0
YYD3_k127_3883618_5 Asp Glu hydantoin racemase K01799 - 5.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 314.0
YYD3_k127_3883618_6 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 302.0
YYD3_k127_3883618_7 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008919 278.0
YYD3_k127_3883618_8 Nitrile hydratase, alpha chain K01721,K20807 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000001929 244.0
YYD3_k127_3883618_9 FCD - - - 0.00000000000000000000000000000000000000000000000001543 188.0
YYD3_k127_388408_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004741 602.0
YYD3_k127_388408_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005773 416.0
YYD3_k127_388408_2 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 370.0
YYD3_k127_388408_3 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006473 361.0
YYD3_k127_388408_4 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 331.0
YYD3_k127_388408_5 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.000000000000000000000000000000000000000000000000000000000000000329 226.0
YYD3_k127_388408_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000002126 228.0
YYD3_k127_388408_7 Domain of unknown function (DUF4864) - - - 0.00000000000000000000000000000006909 126.0
YYD3_k127_388408_8 - - - - 0.00000000000009303 82.0
YYD3_k127_388408_9 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000000006571 56.0
YYD3_k127_4076349_0 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 440.0
YYD3_k127_4076349_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 325.0
YYD3_k127_4076349_2 - - - - 0.0000000000001418 72.0
YYD3_k127_4077175_0 HELICc2 K03722 - 3.6.4.12 0.0 1144.0
YYD3_k127_4077175_1 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K01847 - 5.4.99.2 0.0 1097.0
YYD3_k127_4077175_10 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 355.0
YYD3_k127_4077175_11 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 300.0
YYD3_k127_4077175_12 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 300.0
YYD3_k127_4077175_13 sugar phosphatases of the HAD superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000484 276.0
YYD3_k127_4077175_14 Peptidase S24-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001341 247.0
YYD3_k127_4077175_15 Protein of unknown function (DUF952) - - - 0.0000000000000000000000000000000000000000000007282 168.0
YYD3_k127_4077175_16 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000001693 161.0
YYD3_k127_4077175_17 - - - - 0.00000000000000000000000000000000000000006927 157.0
YYD3_k127_4077175_18 lytic transglycosylase activity - - - 0.0000000000000000000000000000000007061 144.0
YYD3_k127_4077175_19 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000009318 134.0
YYD3_k127_4077175_2 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 1.656e-246 770.0
YYD3_k127_4077175_20 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000002084 131.0
YYD3_k127_4077175_21 Membrane transport protein K07088 - - 0.00000000000000001778 94.0
YYD3_k127_4077175_22 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000003792 87.0
YYD3_k127_4077175_23 PAS domain - - - 0.0000000000000003729 85.0
YYD3_k127_4077175_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 8.386e-230 719.0
YYD3_k127_4077175_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 1.78e-208 666.0
YYD3_k127_4077175_5 TRAP transporter, 4TM 12TM fusion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 596.0
YYD3_k127_4077175_6 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 430.0
YYD3_k127_4077175_7 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006939 422.0
YYD3_k127_4077175_8 4,5-dihydroxyphthalate decarboxylase K04102 - 4.1.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 404.0
YYD3_k127_4077175_9 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 347.0
YYD3_k127_4109626_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 8.547e-222 694.0
YYD3_k127_4109626_1 phosphomannomutase K01840 - 5.4.2.8 3.274e-198 632.0
YYD3_k127_4109626_2 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 433.0
YYD3_k127_4109626_3 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077 325.0
YYD3_k127_4109626_4 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 299.0
YYD3_k127_4109626_5 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000000000000006652 202.0
YYD3_k127_4110492_0 malic enzyme K00029 - 1.1.1.40 0.0 1044.0
YYD3_k127_4110492_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 8.662e-294 907.0
YYD3_k127_4110492_10 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 492.0
YYD3_k127_4110492_11 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009571 442.0
YYD3_k127_4110492_12 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007584 401.0
YYD3_k127_4110492_13 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 374.0
YYD3_k127_4110492_14 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 336.0
YYD3_k127_4110492_15 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 345.0
YYD3_k127_4110492_16 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004401 309.0
YYD3_k127_4110492_17 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 306.0
YYD3_k127_4110492_18 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001107 282.0
YYD3_k127_4110492_19 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003478 279.0
YYD3_k127_4110492_2 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 8.022e-291 901.0
YYD3_k127_4110492_20 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000001294 245.0
YYD3_k127_4110492_21 DSBA-like thioredoxin domain K14584 - 5.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000745 230.0
YYD3_k127_4110492_22 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000001299 226.0
YYD3_k127_4110492_23 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000006232 224.0
YYD3_k127_4110492_24 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000003334 234.0
YYD3_k127_4110492_25 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000001201 217.0
YYD3_k127_4110492_26 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000006674 221.0
YYD3_k127_4110492_27 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000003379 207.0
YYD3_k127_4110492_28 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000008102 214.0
YYD3_k127_4110492_29 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000000004259 199.0
YYD3_k127_4110492_3 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01965 - 6.4.1.3 1.525e-279 876.0
YYD3_k127_4110492_30 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000000000000000000000000000000000000000000001825 200.0
YYD3_k127_4110492_31 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000001485 194.0
YYD3_k127_4110492_32 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000000000000000000003819 195.0
YYD3_k127_4110492_33 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000102 198.0
YYD3_k127_4110492_34 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000000000572 181.0
YYD3_k127_4110492_35 Uncharacterized ACR, COG1993 K09137 - - 0.00000000000000000000000000000000000000000000000002329 180.0
YYD3_k127_4110492_36 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000001886 175.0
YYD3_k127_4110492_37 translation initiation inhibitor - - - 0.0000000000000000000000000000000000000000000003444 172.0
YYD3_k127_4110492_38 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000000000001154 162.0
YYD3_k127_4110492_39 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000001175 164.0
YYD3_k127_4110492_4 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 7.27e-231 728.0
YYD3_k127_4110492_40 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 0.0000000000000000000000000000000000000000001591 162.0
YYD3_k127_4110492_41 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000000001941 165.0
YYD3_k127_4110492_42 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000009756 156.0
YYD3_k127_4110492_43 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000003111 143.0
YYD3_k127_4110492_44 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000000000000000000000001503 126.0
YYD3_k127_4110492_45 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000006268 117.0
YYD3_k127_4110492_46 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000007785 104.0
YYD3_k127_4110492_47 2TM domain - - - 0.0000000000000000000004599 96.0
YYD3_k127_4110492_48 Ribosomal protein L30 K02907 - - 0.00000000000000000001275 92.0
YYD3_k127_4110492_49 Protein conserved in bacteria K09984 - - 0.000000000000000003731 94.0
YYD3_k127_4110492_5 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 3.857e-215 672.0
YYD3_k127_4110492_50 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000126 82.0
YYD3_k127_4110492_51 - - - - 0.000000000003848 73.0
YYD3_k127_4110492_52 - K01611 - 4.1.1.50 0.00000000001561 69.0
YYD3_k127_4110492_53 Uncharacterized protein conserved in bacteria (DUF2059) - - - 0.0004736 50.0
YYD3_k127_4110492_6 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 1.96e-211 665.0
YYD3_k127_4110492_7 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 610.0
YYD3_k127_4110492_8 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 579.0
YYD3_k127_4110492_9 Belongs to the peptidase S1C family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 535.0
YYD3_k127_4134407_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 3.538e-280 876.0
YYD3_k127_4134407_1 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 419.0
YYD3_k127_4134407_10 epimerase - - - 0.0000000000000000000000000000000000007806 156.0
YYD3_k127_4134407_11 Transport permease protein K09688,K09690,K09692 - - 0.00000000000000000000000000000006732 136.0
YYD3_k127_4134407_12 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000007953 133.0
YYD3_k127_4134407_13 - - - - 0.0000000000001014 84.0
YYD3_k127_4134407_14 Asparagine synthase K01953 - 6.3.5.4 0.0000000004524 64.0
YYD3_k127_4134407_2 PFAM Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007057 371.0
YYD3_k127_4134407_3 pfam abc K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 363.0
YYD3_k127_4134407_4 Ribosomal protein L11 methyltransferase (PrmA) K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004126 342.0
YYD3_k127_4134407_5 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 349.0
YYD3_k127_4134407_6 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 308.0
YYD3_k127_4134407_7 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003569 253.0
YYD3_k127_4134407_8 peptidoglycan biosynthetic process K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000006358 246.0
YYD3_k127_4134407_9 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000001507 226.0
YYD3_k127_4139874_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 563.0
YYD3_k127_4139874_1 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 335.0
YYD3_k127_4139874_2 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005718 270.0
YYD3_k127_4139874_3 Dodecin K09165 - - 0.000000000000000000000000000004115 121.0
YYD3_k127_4139874_4 Thioesterase superfamily K02614 - - 0.00000000000000000000000000002038 131.0
YYD3_k127_4139874_5 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0005155 46.0
YYD3_k127_414523_0 Thiamine pyrophosphate enzyme, central domain - - - 1.497e-248 788.0
YYD3_k127_414523_1 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 402.0
YYD3_k127_414523_2 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003448 364.0
YYD3_k127_414523_3 ABC transporter, phosphonate, periplasmic substrate-binding protein K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 344.0
YYD3_k127_414523_4 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 332.0
YYD3_k127_414523_5 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000102 255.0
YYD3_k127_4197520_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.102e-226 708.0
YYD3_k127_4197520_1 transhydrogenase subunit alpha K00324 GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 445.0
YYD3_k127_4197520_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004244 443.0
YYD3_k127_4197520_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 318.0
YYD3_k127_4197520_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000001719 235.0
YYD3_k127_4197520_5 AIR carboxylase K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000008642 223.0
YYD3_k127_4197520_6 COQ9 K18587 - - 0.000000000000000000000000000000000000000000000000000000000000001043 225.0
YYD3_k127_4197520_7 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.000000000000000000000000000000000000001024 153.0
YYD3_k127_4197520_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000007665 111.0
YYD3_k127_4222167_0 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 351.0
YYD3_k127_4222167_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 335.0
YYD3_k127_4222167_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 312.0
YYD3_k127_4222167_3 - - - - 0.0000000000000000000000000000000000004822 152.0
YYD3_k127_4238153_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 2.045e-244 766.0
YYD3_k127_4238153_1 ABC-type sugar transport system periplasmic component K02027,K05813,K17244 - - 6.547e-213 668.0
YYD3_k127_4238153_10 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000001253 260.0
YYD3_k127_4238153_11 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000002241 254.0
YYD3_k127_4238153_12 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000001203 241.0
YYD3_k127_4238153_13 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002452 249.0
YYD3_k127_4238153_14 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000001109 228.0
YYD3_k127_4238153_15 Protein conserved in bacteria K09931 - - 0.0000000000000000000000000000000000000000000000000000003495 199.0
YYD3_k127_4238153_16 CoA-transferase family III - - - 0.0000000000000000000000000000000001056 133.0
YYD3_k127_4238153_2 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 538.0
YYD3_k127_4238153_3 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003586 460.0
YYD3_k127_4238153_4 COG3839 ABC-type sugar transport systems, ATPase components K05816 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 462.0
YYD3_k127_4238153_5 Binding-protein-dependent transport system inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 436.0
YYD3_k127_4238153_6 Binding-protein-dependent transport system inner membrane component K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 436.0
YYD3_k127_4238153_7 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007507 432.0
YYD3_k127_4238153_8 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 404.0
YYD3_k127_4238153_9 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
YYD3_k127_4239505_0 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 2.396e-264 854.0
YYD3_k127_4239505_1 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 2.167e-226 712.0
YYD3_k127_4239505_10 COG4608 ABC-type oligopeptide transport system, ATPase component K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 445.0
YYD3_k127_4239505_11 Peptidase family M28 K02083 - 3.5.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 449.0
YYD3_k127_4239505_12 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008285 444.0
YYD3_k127_4239505_13 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 411.0
YYD3_k127_4239505_14 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 406.0
YYD3_k127_4239505_15 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 413.0
YYD3_k127_4239505_16 Bacterial extracellular solute-binding protein K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 386.0
YYD3_k127_4239505_17 PFAM ABC transporter K02052,K11072 - 3.6.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 374.0
YYD3_k127_4239505_18 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 351.0
YYD3_k127_4239505_19 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 347.0
YYD3_k127_4239505_2 Peptidase family M20/M25/M40 - - - 2.598e-219 690.0
YYD3_k127_4239505_20 ABC-type nitrate sulfonate bicarbonate transport system, permease component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 343.0
YYD3_k127_4239505_21 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006345 351.0
YYD3_k127_4239505_22 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 319.0
YYD3_k127_4239505_23 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008025 314.0
YYD3_k127_4239505_24 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002657 287.0
YYD3_k127_4239505_25 PFAM 20S proteasome, A and B subunits K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001263 279.0
YYD3_k127_4239505_26 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004743 250.0
YYD3_k127_4239505_27 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000009399 243.0
YYD3_k127_4239505_28 Bacterial lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002994 248.0
YYD3_k127_4239505_29 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000008835 224.0
YYD3_k127_4239505_3 Circularly permuted ATP-grasp type 2 - - - 6.359e-217 682.0
YYD3_k127_4239505_30 Beta-ketoacyl synthase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000123 229.0
YYD3_k127_4239505_31 allantoin biosynthetic process K13485 - 4.1.1.97 0.000000000000000000000000000000000000000000000281 181.0
YYD3_k127_4239505_32 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.0000000000000000000000000000000000000000514 162.0
YYD3_k127_4239505_33 Histidine kinase - - - 0.0000000000000000000000000000000000003202 163.0
YYD3_k127_4239505_34 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000002843 143.0
YYD3_k127_4239505_35 dehydratase - - - 0.0000000000000000000000000000002515 133.0
YYD3_k127_4239505_36 HIUase/Transthyretin family K07127 - 3.5.2.17 0.00000000000000000000000000006864 130.0
YYD3_k127_4239505_37 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000001014 121.0
YYD3_k127_4239505_38 Phosphopantetheine attachment site K02078 - - 0.000000000000000000000000003256 113.0
YYD3_k127_4239505_39 - - - - 0.0000000000000000000000001803 110.0
YYD3_k127_4239505_4 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K00830,K00839 - 2.6.1.112,2.6.1.44,2.6.1.45,2.6.1.51 8.796e-194 616.0
YYD3_k127_4239505_40 DUF218 domain - - - 0.00000000000000000000009266 110.0
YYD3_k127_4239505_41 AMP-binding enzyme - - - 0.00000000000002471 77.0
YYD3_k127_4239505_42 - - - - 0.000000000003026 70.0
YYD3_k127_4239505_43 Acetyltransferase (GNAT) family - - - 0.000000006421 67.0
YYD3_k127_4239505_44 beta-lactamase activity K07126 GO:0006950,GO:0006979,GO:0008150,GO:0050896 - 0.00000005973 63.0
YYD3_k127_4239505_5 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 511.0
YYD3_k127_4239505_6 Polysaccharide deacetylase K01452 - 3.5.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 491.0
YYD3_k127_4239505_7 MMPL family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 505.0
YYD3_k127_4239505_8 Tryptophan halogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 453.0
YYD3_k127_4239505_9 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003902 452.0
YYD3_k127_4249928_0 Bacterial protein of unknown function (DUF839) K07093 - - 3.042e-242 771.0
YYD3_k127_4249928_1 Bacterial protein of unknown function (DUF839) K07093 - - 1.419e-239 758.0
YYD3_k127_4249928_2 COG1042 Acyl-CoA synthetase (NDP forming) K09181 - - 0.000000000001315 69.0
YYD3_k127_4311077_0 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 588.0
YYD3_k127_4311077_1 Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 389.0
YYD3_k127_4311077_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007857 357.0
YYD3_k127_4311077_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 317.0
YYD3_k127_4311077_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.00000000000000000000000000000000000000000000000000000003399 202.0
YYD3_k127_4311077_5 transcriptional regulator - - - 0.00000000000000000000000000000000001327 141.0
YYD3_k127_4311077_6 - - - - 0.00000000000000000000000006839 115.0
YYD3_k127_4311077_7 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000001055 69.0
YYD3_k127_4313203_0 DEAD/H associated K03724 - - 0.0 1087.0
YYD3_k127_4313203_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 3.727e-232 732.0
YYD3_k127_4313203_10 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004261 587.0
YYD3_k127_4313203_11 Amidase, hydantoinase carbamoylase family K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 568.0
YYD3_k127_4313203_12 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 592.0
YYD3_k127_4313203_13 Acetamidase/Formamidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 560.0
YYD3_k127_4313203_14 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 563.0
YYD3_k127_4313203_15 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 539.0
YYD3_k127_4313203_16 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 514.0
YYD3_k127_4313203_17 Pirin K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 496.0
YYD3_k127_4313203_18 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004621 502.0
YYD3_k127_4313203_19 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009553 491.0
YYD3_k127_4313203_2 Tripartite tricarboxylate transporter TctA family - - - 9.473e-200 633.0
YYD3_k127_4313203_20 Peptidase family M20/M25/M40 K06016 - 3.5.1.6,3.5.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005525 511.0
YYD3_k127_4313203_21 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 493.0
YYD3_k127_4313203_22 Putative sugar-binding N-terminal domain K21948 - 2.7.1.217 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 483.0
YYD3_k127_4313203_23 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 471.0
YYD3_k127_4313203_24 CoA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 484.0
YYD3_k127_4313203_25 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 464.0
YYD3_k127_4313203_26 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007965 461.0
YYD3_k127_4313203_27 ubiquitin protein ligase binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 464.0
YYD3_k127_4313203_28 Pyridoxal-phosphate dependent enzyme K01751 - 4.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 459.0
YYD3_k127_4313203_29 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009425 437.0
YYD3_k127_4313203_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.441e-198 627.0
YYD3_k127_4313203_30 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 446.0
YYD3_k127_4313203_31 Dihydrodipicolinate synthetase family K01707 - 4.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 425.0
YYD3_k127_4313203_32 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 422.0
YYD3_k127_4313203_33 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009657 421.0
YYD3_k127_4313203_34 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 412.0
YYD3_k127_4313203_35 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase K01826 - 5.3.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 407.0
YYD3_k127_4313203_36 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 400.0
YYD3_k127_4313203_37 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 400.0
YYD3_k127_4313203_38 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 389.0
YYD3_k127_4313203_39 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 385.0
YYD3_k127_4313203_4 Protein of unknown function (DUF1116) - - - 1.544e-195 621.0
YYD3_k127_4313203_40 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 384.0
YYD3_k127_4313203_41 Helix-turn-helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 383.0
YYD3_k127_4313203_42 3-beta hydroxysteroid dehydrogenase/isomerase family K18981 - 1.1.1.203 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 375.0
YYD3_k127_4313203_43 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000374 380.0
YYD3_k127_4313203_44 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 368.0
YYD3_k127_4313203_45 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 348.0
YYD3_k127_4313203_46 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 340.0
YYD3_k127_4313203_47 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 334.0
YYD3_k127_4313203_48 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 334.0
YYD3_k127_4313203_49 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 335.0
YYD3_k127_4313203_5 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 608.0
YYD3_k127_4313203_50 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008223 319.0
YYD3_k127_4313203_51 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004584 316.0
YYD3_k127_4313203_52 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006179 317.0
YYD3_k127_4313203_53 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 306.0
YYD3_k127_4313203_54 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002986 287.0
YYD3_k127_4313203_55 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001559 281.0
YYD3_k127_4313203_56 Class II Aldolase and Adducin N-terminal domain K22130 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0019321,GO:0019323,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0071704,GO:1901575 4.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004807 275.0
YYD3_k127_4313203_57 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000281 275.0
YYD3_k127_4313203_58 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001099 275.0
YYD3_k127_4313203_59 Pfam Major Facilitator Superfamily K08223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005228 279.0
YYD3_k127_4313203_6 ABC-type oligopeptide transport system, periplasmic component K02035,K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 613.0
YYD3_k127_4313203_60 Calcineurin-like phosphoesterase K06953 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002449 261.0
YYD3_k127_4313203_61 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005304 261.0
YYD3_k127_4313203_62 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004557 246.0
YYD3_k127_4313203_63 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.000000000000000000000000000000000000000000000000007435 186.0
YYD3_k127_4313203_64 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000005714 180.0
YYD3_k127_4313203_65 - - - - 0.000000000000000000000000000000000000000000001444 176.0
YYD3_k127_4313203_66 Protein of unknown function (DUF2877) - - - 0.0000000000000000000000000000000000000000001418 171.0
YYD3_k127_4313203_67 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000000000000000000000000000000000003884 164.0
YYD3_k127_4313203_68 Restriction endonuclease - - - 0.00000000000000000000000007843 114.0
YYD3_k127_4313203_69 - - - - 0.000000000000000006231 90.0
YYD3_k127_4313203_7 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 599.0
YYD3_k127_4313203_70 - - - - 0.00000000003807 72.0
YYD3_k127_4313203_71 - - - - 0.0000000272 63.0
YYD3_k127_4313203_8 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 586.0
YYD3_k127_4313203_9 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 582.0
YYD3_k127_4321390_0 COG1960 Acyl-CoA dehydrogenases K14448 - 1.3.8.12 4.931e-216 683.0
YYD3_k127_4321390_1 Dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 462.0
YYD3_k127_4321390_10 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000004862 134.0
YYD3_k127_4321390_11 Barstar (barnase inhibitor) K03623 - - 0.0000000000001056 76.0
YYD3_k127_4321390_12 Hypoxia induced protein conserved region - - - 0.000000001015 62.0
YYD3_k127_4321390_13 Glycosyl transferase family 21 - - - 0.00000006154 56.0
YYD3_k127_4321390_2 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 442.0
YYD3_k127_4321390_3 Electron transfer flavoprotein, beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 397.0
YYD3_k127_4321390_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 383.0
YYD3_k127_4321390_5 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 332.0
YYD3_k127_4321390_6 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007635 275.0
YYD3_k127_4321390_7 Bacterial protein of unknown function (DUF898) - - - 0.0000000000000000000000000000000000000000000000002722 190.0
YYD3_k127_4321390_8 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000004475 178.0
YYD3_k127_4321390_9 ribonuclease - GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000009954 158.0
YYD3_k127_4327389_0 argininosuccinate lyase K01755 - 4.3.2.1 1.269e-198 629.0
YYD3_k127_4327389_1 Domain of unknown function (DUF4175) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006098 606.0
YYD3_k127_4327389_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006793 494.0
YYD3_k127_4327389_3 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009779 281.0
YYD3_k127_4327389_4 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000002608 174.0
YYD3_k127_4327389_5 - - - - 0.00000000000000000000000000000000000000000000911 168.0
YYD3_k127_4327389_6 SCO1/SenC K07152 - - 0.0000000000000000000000000000000000000127 155.0
YYD3_k127_4327389_7 - - - - 0.00000000000000000000000000000000000001856 151.0
YYD3_k127_4327389_8 Glycosyl transferase, family 2 K00786 - - 0.000000000000000000000000000000000001285 145.0
YYD3_k127_4327389_9 cytochrome K08738 - - 0.0000000000000000000000003039 109.0
YYD3_k127_4330192_0 Creatinase/Prolidase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 579.0
YYD3_k127_4330192_1 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 572.0
YYD3_k127_4330192_10 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000000003314 151.0
YYD3_k127_4330192_11 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000001059 147.0
YYD3_k127_4330192_12 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000006521 121.0
YYD3_k127_4330192_2 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 519.0
YYD3_k127_4330192_3 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 488.0
YYD3_k127_4330192_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 441.0
YYD3_k127_4330192_5 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 406.0
YYD3_k127_4330192_6 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 395.0
YYD3_k127_4330192_7 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 381.0
YYD3_k127_4330192_8 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 310.0
YYD3_k127_4351937_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.834e-210 667.0
YYD3_k127_4351937_1 COG0768 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 1.09e-200 641.0
YYD3_k127_4351937_10 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007748 385.0
YYD3_k127_4351937_11 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 362.0
YYD3_k127_4351937_12 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 351.0
YYD3_k127_4351937_13 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily K15268 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 315.0
YYD3_k127_4351937_14 COG3023 Negative regulator of beta-lactamase expression K01447 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000001882 283.0
YYD3_k127_4351937_15 Cell division protein FtsQ K03589 - - 0.00000000000000000000000000000000000000000000000000000000000000002036 233.0
YYD3_k127_4351937_16 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000003048 158.0
YYD3_k127_4351937_17 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000001659 142.0
YYD3_k127_4351937_18 - - - - 0.000000000000000000000004653 110.0
YYD3_k127_4351937_2 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K15738 - - 8.896e-198 634.0
YYD3_k127_4351937_20 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000002025 60.0
YYD3_k127_4351937_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 563.0
YYD3_k127_4351937_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 559.0
YYD3_k127_4351937_5 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 532.0
YYD3_k127_4351937_6 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 527.0
YYD3_k127_4351937_7 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 496.0
YYD3_k127_4351937_8 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 479.0
YYD3_k127_4351937_9 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 422.0
YYD3_k127_4355644_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1148.0
YYD3_k127_4355644_1 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.0 1019.0
YYD3_k127_4355644_10 ABC transporter permease protein yehY K05846 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000834 320.0
YYD3_k127_4355644_11 PFAM binding-protein-dependent transport systems inner membrane component K05846 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0072337 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006753 285.0
YYD3_k127_4355644_12 Domain of unknown function (DUF4863) - - - 0.0000000000000000000000000000000000000000000000000000000007547 206.0
YYD3_k127_4355644_13 Low molecular weight phosphatase family K03741,K03892 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000002887 189.0
YYD3_k127_4355644_14 Pyroglutamyl peptidase K01304 - 3.4.19.3 0.0000000000000000000000000000000000000000000000001497 185.0
YYD3_k127_4355644_15 Thioesterase - - - 0.000000000000000000000000000000000000004796 150.0
YYD3_k127_4355644_16 Thioesterase superfamily K01075 - 3.1.2.23 0.00000000000000000000000000000006431 132.0
YYD3_k127_4355644_17 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000006594 126.0
YYD3_k127_4355644_18 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000005824 106.0
YYD3_k127_4355644_19 - - - - 0.00000000000000000000005703 109.0
YYD3_k127_4355644_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 2.001e-213 673.0
YYD3_k127_4355644_20 Rhodanese Homology Domain - - - 0.0000000000000000000002111 105.0
YYD3_k127_4355644_21 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000002908 100.0
YYD3_k127_4355644_22 Substrate-binding region of ABC-type glycine betaine transport system K05845 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0033554,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0071214,GO:0071470,GO:0071474,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0104004 - 0.00000000000006174 79.0
YYD3_k127_4355644_23 - - - - 0.000008046 56.0
YYD3_k127_4355644_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 528.0
YYD3_k127_4355644_4 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 511.0
YYD3_k127_4355644_5 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 413.0
YYD3_k127_4355644_6 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 411.0
YYD3_k127_4355644_7 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 381.0
YYD3_k127_4355644_8 Substrate binding domain of ABC-type glycine betaine transport system K05845 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0016020,GO:0031460,GO:0033554,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0071214,GO:0071470,GO:0071474,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0104004 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 332.0
YYD3_k127_4355644_9 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006644 327.0
YYD3_k127_4371064_0 Chloride channel protein K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000132 263.0
YYD3_k127_4371064_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000006187 168.0
YYD3_k127_4397029_0 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 3.984e-319 995.0
YYD3_k127_4397029_1 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 606.0
YYD3_k127_4397029_10 - - - - 0.00000000000000000000006465 103.0
YYD3_k127_4397029_2 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008725 490.0
YYD3_k127_4397029_3 Biopterin-dependent aromatic amino acid hydroxylase K00500 - 1.14.16.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 374.0
YYD3_k127_4397029_4 Subtilase family K17734 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 377.0
YYD3_k127_4397029_5 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003124 276.0
YYD3_k127_4397029_6 LTXXQ motif family protein - - - 0.00000000000000000000000000000000000008144 151.0
YYD3_k127_4397029_7 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000003613 142.0
YYD3_k127_4397029_8 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K00058 - 1.1.1.26,1.1.1.399,1.1.1.95 0.000000000000000000000000000000003855 138.0
YYD3_k127_4397029_9 YHS domain - - - 0.000000000000000000000000000000005023 132.0
YYD3_k127_4402565_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 6.914e-227 719.0
YYD3_k127_4402565_1 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 556.0
YYD3_k127_4402565_10 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.0000000000000000000000001206 108.0
YYD3_k127_4402565_2 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 479.0
YYD3_k127_4402565_3 Dicarboxylate transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 448.0
YYD3_k127_4402565_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 341.0
YYD3_k127_4402565_5 HpcH/HpaI aldolase/citrate lyase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 339.0
YYD3_k127_4402565_6 N-formylglutamate amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007531 271.0
YYD3_k127_4402565_7 Protein of unknown function (DUF429) - - - 0.0000000000000000000000000000000000000000000000000003798 194.0
YYD3_k127_4402565_8 Protein of unknown function (DUF1244) K09948 - - 0.000000000000000000000000000000000000000003963 156.0
YYD3_k127_4402565_9 Protein of unknown function (DUF1318) - - - 0.0000000000000000000000000000000000007644 144.0
YYD3_k127_440738_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 9.968e-303 945.0
YYD3_k127_440738_1 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 4.135e-245 772.0
YYD3_k127_440738_10 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008024 400.0
YYD3_k127_440738_11 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 404.0
YYD3_k127_440738_12 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007806 370.0
YYD3_k127_440738_13 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 346.0
YYD3_k127_440738_14 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 351.0
YYD3_k127_440738_15 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 322.0
YYD3_k127_440738_16 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 297.0
YYD3_k127_440738_17 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 294.0
YYD3_k127_440738_18 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 289.0
YYD3_k127_440738_19 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007225 267.0
YYD3_k127_440738_2 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K08295 - 6.2.1.32 1.171e-227 717.0
YYD3_k127_440738_20 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002792 256.0
YYD3_k127_440738_21 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000004729 226.0
YYD3_k127_440738_22 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000000000000004692 211.0
YYD3_k127_440738_23 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000000000000000005184 202.0
YYD3_k127_440738_24 Thioesterase superfamily K10806 - - 0.000000000000000000000000000000000000000000000000000007201 192.0
YYD3_k127_440738_25 COG0346 Lactoylglutathione lyase and related lyases - - - 0.000000000000000000000000000000000000000000000000001585 190.0
YYD3_k127_440738_26 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000000000000001046 183.0
YYD3_k127_440738_27 glutamine synthetase K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000631 172.0
YYD3_k127_440738_28 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000001903 163.0
YYD3_k127_440738_29 COG1335 Amidases related to nicotinamidase - - - 0.0000000000000000000000000000000000000002235 158.0
YYD3_k127_440738_3 Belongs to the DEAD box helicase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 589.0
YYD3_k127_440738_30 COG1522 Transcriptional regulators - - - 0.0000000000000000000000000000000006096 132.0
YYD3_k127_440738_31 - - - - 0.000000000000000000000000000000001849 139.0
YYD3_k127_440738_32 - - - - 0.0000000000002365 78.0
YYD3_k127_440738_33 - - - - 0.00000000565 63.0
YYD3_k127_440738_34 Heavy-metal resistance - - - 0.00001138 54.0
YYD3_k127_440738_4 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 560.0
YYD3_k127_440738_5 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 513.0
YYD3_k127_440738_6 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 472.0
YYD3_k127_440738_7 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 456.0
YYD3_k127_440738_8 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 435.0
YYD3_k127_440738_9 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 411.0
YYD3_k127_4410826_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 2.03e-205 653.0
YYD3_k127_4410826_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 577.0
YYD3_k127_4410826_10 MreB/Mbl protein K04044 - - 0.000000000000000000000001453 106.0
YYD3_k127_4410826_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 414.0
YYD3_k127_4410826_3 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 386.0
YYD3_k127_4410826_4 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007362 325.0
YYD3_k127_4410826_5 hydrolase of the alpha beta superfamily K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 324.0
YYD3_k127_4410826_6 transcriptional regulator K13643 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005809 247.0
YYD3_k127_4410826_7 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488,K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000002021 234.0
YYD3_k127_4410826_8 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.00000000000000000000000000000000000000000000000000009319 193.0
YYD3_k127_4410826_9 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000008071 190.0
YYD3_k127_4431671_0 Fumarate reductase flavoprotein C-term - - - 1.082e-234 735.0
YYD3_k127_4431671_1 D-galactarate dehydratase / Altronate hydrolase, C terminus - - - 7.441e-220 691.0
YYD3_k127_4431671_10 SAF - - - 0.00000000000000000000000000000000000000000003427 164.0
YYD3_k127_4431671_11 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.0000000000000000000000000000000000000003478 155.0
YYD3_k127_4431671_12 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.00000000000000000000000000046 121.0
YYD3_k127_4431671_13 Gamma-glutamyl cyclotransferase, AIG2-like K19761 - - 0.00000000000000000000007297 105.0
YYD3_k127_4431671_2 Fumarate hydratase (Fumerase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 472.0
YYD3_k127_4431671_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 426.0
YYD3_k127_4431671_4 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 405.0
YYD3_k127_4431671_5 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 406.0
YYD3_k127_4431671_6 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 364.0
YYD3_k127_4431671_7 Fumarase C-terminus K01678,K03780 - 4.2.1.2,4.2.1.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 310.0
YYD3_k127_4431671_8 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 295.0
YYD3_k127_4431671_9 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000000000000000006314 224.0
YYD3_k127_4458747_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0 1089.0
YYD3_k127_4458747_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 370.0
YYD3_k127_4458747_10 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000003587 82.0
YYD3_k127_4458747_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 332.0
YYD3_k127_4458747_3 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 307.0
YYD3_k127_4458747_4 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001157 282.0
YYD3_k127_4458747_5 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000001551 276.0
YYD3_k127_4458747_6 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000001248 245.0
YYD3_k127_4458747_7 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000000000000000001911 186.0
YYD3_k127_4458747_8 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000001906 164.0
YYD3_k127_4458747_9 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000000000009656 134.0
YYD3_k127_4464826_0 Thiol disulfide interchange protein K04084,K08344 - 1.8.1.8 5.848e-194 628.0
YYD3_k127_4464826_1 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007712 492.0
YYD3_k127_4464826_2 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 332.0
YYD3_k127_4464826_3 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002194 260.0
YYD3_k127_4464826_4 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000001073 240.0
YYD3_k127_4464826_5 RNase H K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000006944 226.0
YYD3_k127_4464826_6 Protein of unknown function (DUF541) - - - 0.000000000000000000000000000000000000000000000003228 188.0
YYD3_k127_4464826_7 Threonine synthase K01733 - 4.2.3.1 0.0000009448 51.0
YYD3_k127_451824_0 Methionine synthase K00548 - 2.1.1.13 0.0 1805.0
YYD3_k127_451824_1 DNA helicase K03657 - 3.6.4.12 0.0 1014.0
YYD3_k127_451824_10 ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000000000000000000000002378 223.0
YYD3_k127_451824_11 Sodium Bile acid symporter family - - - 0.00000000000000000000000000000000000000000000000000000003424 208.0
YYD3_k127_451824_12 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000003094 182.0
YYD3_k127_451824_13 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000000000000000000000000000000000000000000000001841 181.0
YYD3_k127_451824_14 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000004654 169.0
YYD3_k127_451824_15 CGNR zinc finger - - - 0.00000000000000000000002484 108.0
YYD3_k127_451824_16 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.0000000000000000005111 93.0
YYD3_k127_451824_17 Major facilitator superfamily - - - 0.00000006709 64.0
YYD3_k127_451824_19 Domain of unknown function (DUF1127) - - - 0.0004154 50.0
YYD3_k127_451824_2 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 3.555e-253 786.0
YYD3_k127_451824_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 6.065e-252 797.0
YYD3_k127_451824_4 aminopeptidase K01262 - 3.4.11.9 3.896e-250 790.0
YYD3_k127_451824_5 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 441.0
YYD3_k127_451824_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 374.0
YYD3_k127_451824_7 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002957 313.0
YYD3_k127_451824_8 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004462 270.0
YYD3_k127_451824_9 (Lipo)protein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000001243 235.0
YYD3_k127_4541463_0 ABC-type oligopeptide transport system, periplasmic component K02035,K13893 - - 1.771e-241 760.0
YYD3_k127_4541463_1 Belongs to the ABC transporter superfamily K13896 - - 6.663e-235 739.0
YYD3_k127_4541463_10 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 388.0
YYD3_k127_4541463_11 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 377.0
YYD3_k127_4541463_12 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 376.0
YYD3_k127_4541463_13 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 372.0
YYD3_k127_4541463_14 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 355.0
YYD3_k127_4541463_15 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 337.0
YYD3_k127_4541463_16 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 309.0
YYD3_k127_4541463_17 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 300.0
YYD3_k127_4541463_18 NMT1-like family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 308.0
YYD3_k127_4541463_19 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004044 297.0
YYD3_k127_4541463_2 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007307 606.0
YYD3_k127_4541463_20 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000001795 242.0
YYD3_k127_4541463_21 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000001508 239.0
YYD3_k127_4541463_22 Domain of unknown function (DUF4439) - - - 0.000000000000000000000000000000000000000000000000000000000000001521 224.0
YYD3_k127_4541463_23 COG3474 Cytochrome c2 K08738 - - 0.00000000000000000000000000000000000000000000001103 177.0
YYD3_k127_4541463_24 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000000000000000000000000000000000000001187 153.0
YYD3_k127_4541463_25 Cytochrome c - - - 0.000000000000000000000000000000000000005008 150.0
YYD3_k127_4541463_26 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000001204 151.0
YYD3_k127_4541463_27 Anti-sigma-K factor rskA - - - 0.00000000000000000000000252 109.0
YYD3_k127_4541463_28 DsrE/DsrF-like family K06039 - - 0.00000000000000000111 87.0
YYD3_k127_4541463_29 DsrE/DsrF-like family K06039 - - 0.00003161 49.0
YYD3_k127_4541463_3 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 602.0
YYD3_k127_4541463_30 PAS domain - - - 0.0002535 50.0
YYD3_k127_4541463_4 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 585.0
YYD3_k127_4541463_5 transport system, permease component K13894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 573.0
YYD3_k127_4541463_6 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 571.0
YYD3_k127_4541463_7 transport system, permease component K13895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 562.0
YYD3_k127_4541463_8 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 517.0
YYD3_k127_4541463_9 SMP-30/Gluconolaconase/LRE-like region K02352 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 408.0
YYD3_k127_4598316_0 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007154 609.0
YYD3_k127_4598316_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007055 294.0
YYD3_k127_4598316_2 Aminoacyl-tRNA editing domain - - - 0.00000000000000000000000000000000000000000000000000000000813 203.0
YYD3_k127_4598316_3 - - - - 0.00000000000000000000000000000000000000000000000003499 189.0
YYD3_k127_4598316_4 transcriptional regulator - - - 0.00000000000000000000000000000000000000005496 159.0
YYD3_k127_4598316_5 Phasin protein - - - 0.0000000000000000000000000000000000001429 148.0
YYD3_k127_4598316_6 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000001279 86.0
YYD3_k127_4667999_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 402.0
YYD3_k127_4667999_1 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 340.0
YYD3_k127_4667999_2 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.0000000000000000000000000000000000000000000000001646 181.0
YYD3_k127_4667999_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000001317 157.0
YYD3_k127_4667999_4 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.0000000000000000000000000000000000006671 142.0
YYD3_k127_4667999_5 Putative cyclase - - - 0.0000000000000000000000000000002043 129.0
YYD3_k127_4667999_6 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000009257 79.0
YYD3_k127_4676188_0 Belongs to the GcvT family K19191 - 1.5.3.19 1.323e-320 1000.0
YYD3_k127_4676188_1 ABC-type Fe3 transport system permease component K02011 - - 2.247e-217 688.0
YYD3_k127_4676188_10 Choline/ethanolamine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 360.0
YYD3_k127_4676188_11 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 360.0
YYD3_k127_4676188_12 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 349.0
YYD3_k127_4676188_13 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001699 274.0
YYD3_k127_4676188_14 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001942 268.0
YYD3_k127_4676188_15 Transcriptional regulator, LysR family K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000007618 242.0
YYD3_k127_4676188_16 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000007705 199.0
YYD3_k127_4676188_17 spore germination - - - 0.00000000000000000000000000000000000000000000000000008515 197.0
YYD3_k127_4676188_18 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000000000000000000000000000001694 163.0
YYD3_k127_4676188_19 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000002779 93.0
YYD3_k127_4676188_2 Prolyl oligopeptidase family - - - 3.806e-211 679.0
YYD3_k127_4676188_20 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000009077 83.0
YYD3_k127_4676188_21 - - - - 0.000004554 52.0
YYD3_k127_4676188_3 Aminotransferase class-III K00823 - 2.6.1.19 3.45e-210 662.0
YYD3_k127_4676188_4 Aldehyde dehydrogenase family - - - 3.32e-208 659.0
YYD3_k127_4676188_5 phosphonoacetate hydrolase K19670 - 3.11.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 567.0
YYD3_k127_4676188_6 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 515.0
YYD3_k127_4676188_7 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005393 509.0
YYD3_k127_4676188_8 TOBE domain K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 464.0
YYD3_k127_4676188_9 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 414.0
YYD3_k127_4724884_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.283e-226 707.0
YYD3_k127_4724884_1 LUD domain K18929 - - 7.223e-222 710.0
YYD3_k127_4724884_10 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 368.0
YYD3_k127_4724884_11 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 340.0
YYD3_k127_4724884_12 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007702 320.0
YYD3_k127_4724884_13 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 315.0
YYD3_k127_4724884_14 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 284.0
YYD3_k127_4724884_15 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 284.0
YYD3_k127_4724884_16 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001213 290.0
YYD3_k127_4724884_17 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006136 246.0
YYD3_k127_4724884_18 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000009229 237.0
YYD3_k127_4724884_19 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000005694 229.0
YYD3_k127_4724884_2 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 1.671e-212 668.0
YYD3_k127_4724884_20 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000001576 227.0
YYD3_k127_4724884_21 LUD domain K00782 - - 0.00000000000000000000000000000000000000000000000000000000000001575 230.0
YYD3_k127_4724884_22 Belongs to the phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000348 211.0
YYD3_k127_4724884_23 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000001113 196.0
YYD3_k127_4724884_24 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000000000000000342 172.0
YYD3_k127_4724884_25 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000009926 156.0
YYD3_k127_4724884_26 PAS domain - - - 0.0000000000000000000000000000002114 130.0
YYD3_k127_4724884_27 protein conserved in bacteria - - - 0.0000000000000000000000000000004525 132.0
YYD3_k127_4724884_28 PFAM Transglycosylase-associated protein - - - 0.0000000000000000001617 91.0
YYD3_k127_4724884_29 Belongs to the short-chain dehydrogenases reductases (SDR) family K04786,K13611,K13612,K13613,K13614,K16216 - 1.1.1.320 0.000000000000000001842 96.0
YYD3_k127_4724884_3 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.763e-197 621.0
YYD3_k127_4724884_30 nUDIX hydrolase - - - 0.00000000000000001875 86.0
YYD3_k127_4724884_31 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000547 75.0
YYD3_k127_4724884_32 Protein of unknown function (DUF2628) - - - 0.000000000003979 78.0
YYD3_k127_4724884_33 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000006406 59.0
YYD3_k127_4724884_4 membrane-bound lytic murein transglycosylase K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 503.0
YYD3_k127_4724884_5 Pfam:DUF955 K07110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 498.0
YYD3_k127_4724884_6 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 430.0
YYD3_k127_4724884_7 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 424.0
YYD3_k127_4724884_8 (Fe-S) oxidoreductase K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 396.0
YYD3_k127_4724884_9 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008902 370.0
YYD3_k127_4727235_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 GO:0003674,GO:0003824,GO:0004474,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044464,GO:0046487,GO:0046912,GO:0071704 2.3.3.9 1.248e-242 763.0
YYD3_k127_4727235_1 Adenylate cyclase - - - 7.667e-232 732.0
YYD3_k127_4727235_2 HpcH/HpaI aldolase/citrate lyase family K08691 - 4.1.3.24,4.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 477.0
YYD3_k127_4727235_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004248 457.0
YYD3_k127_4727235_4 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004489 392.0
YYD3_k127_4727235_5 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001909 260.0
YYD3_k127_4727235_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000000000000000000000000000000000001504 231.0
YYD3_k127_4727235_7 - - - - 0.000000000000000000000000000000000000000000000000000001773 213.0
YYD3_k127_4779021_0 Ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 558.0
YYD3_k127_4779021_1 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005084 472.0
YYD3_k127_4779021_10 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 0.0000000000000000000000000000000000000003757 163.0
YYD3_k127_4779021_11 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000004903 154.0
YYD3_k127_4779021_12 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000007547 143.0
YYD3_k127_4779021_13 Belongs to the UPF0434 family K09791 - - 0.0000000000000000000000000997 107.0
YYD3_k127_4779021_14 - - - - 0.000579 49.0
YYD3_k127_4779021_2 COG0436 Aspartate tyrosine aromatic aminotransferase K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 462.0
YYD3_k127_4779021_3 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 398.0
YYD3_k127_4779021_4 Thioredoxin K05838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 358.0
YYD3_k127_4779021_5 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 353.0
YYD3_k127_4779021_6 Flavodoxin-like fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007551 247.0
YYD3_k127_4779021_7 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000005975 235.0
YYD3_k127_4779021_8 Protein of unknown function (DUF971) - - - 0.000000000000000000000000000000000000000000000000000147 191.0
YYD3_k127_4779021_9 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000000006821 187.0
YYD3_k127_4782574_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 3.244e-229 715.0
YYD3_k127_4782574_1 sequence-specific DNA binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000701 476.0
YYD3_k127_4782574_2 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 330.0
YYD3_k127_4782574_3 COG3806 Anti-sigma factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 329.0
YYD3_k127_4782574_4 NnrU protein - - - 0.000000000000000000000000000000000000000000000000000000025 205.0
YYD3_k127_4782574_5 YHS domain protein - - - 0.00000000000000000000000000000000000000000004412 168.0
YYD3_k127_4782574_6 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000000000000000008771 152.0
YYD3_k127_4782574_7 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000001623 62.0
YYD3_k127_4814601_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2316.0
YYD3_k127_4814601_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2245.0
YYD3_k127_4840323_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 519.0
YYD3_k127_4840323_1 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001 502.0
YYD3_k127_4840323_2 COG0811 Biopolymer transport proteins K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 322.0
YYD3_k127_4840323_3 biopolymer transport protein K03559,K03560 - - 0.00000000000000000000000000000000000000000000005206 175.0
YYD3_k127_4840323_4 Cell division and transport-associated protein TolA - - - 0.00000000000000000000000000000000000000001775 165.0
YYD3_k127_4840323_5 thioesterase' K07107 - - 0.0000000000000000000000000000000006296 138.0
YYD3_k127_4840323_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000162 73.0
YYD3_k127_4849664_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 5.066e-314 972.0
YYD3_k127_4849664_1 Na+ dependent nucleoside transporter C-terminus K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 530.0
YYD3_k127_4849664_2 Mate efflux family protein K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008544 464.0
YYD3_k127_4849664_3 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 373.0
YYD3_k127_4849664_4 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006446 339.0
YYD3_k127_4849664_5 COG0620 Methionine synthase II (cobalamin-independent) K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000002996 218.0
YYD3_k127_4849664_6 domain, Protein - - - 0.00000000000000000000000000000000000000141 148.0
YYD3_k127_485517_0 CoA binding domain - - - 0.0 1081.0
YYD3_k127_485517_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 8.506e-279 870.0
YYD3_k127_485517_10 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000116 84.0
YYD3_k127_485517_2 Tripartite tricarboxylate transporter TctA family K07793 - - 3.244e-250 783.0
YYD3_k127_485517_3 CoA-transferase family III K07544,K07749 - 2.8.3.15,2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 608.0
YYD3_k127_485517_4 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 602.0
YYD3_k127_485517_5 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 497.0
YYD3_k127_485517_6 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 400.0
YYD3_k127_485517_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 328.0
YYD3_k127_485517_8 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 304.0
YYD3_k127_485517_9 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000000000000000001124 176.0
YYD3_k127_4856415_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 469.0
YYD3_k127_4856415_1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005125 381.0
YYD3_k127_4856415_10 Domain of unknown function (DUF3576) - - - 0.0000000000000000000000000000000000000000000000000000001165 200.0
YYD3_k127_4856415_11 Gram-negative porin K08720 - - 0.000000000000000000000000000000000000000000000000001761 199.0
YYD3_k127_4856415_12 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000759 166.0
YYD3_k127_4856415_2 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 365.0
YYD3_k127_4856415_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 315.0
YYD3_k127_4856415_4 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 306.0
YYD3_k127_4856415_5 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 302.0
YYD3_k127_4856415_6 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001202 275.0
YYD3_k127_4856415_7 Sulfotransferase domain K01014 - 2.8.2.1 0.000000000000000000000000000000000000000000000000000000000000000001205 237.0
YYD3_k127_4856415_8 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000000000000001205 219.0
YYD3_k127_4856415_9 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000001177 206.0
YYD3_k127_4903827_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.366e-254 794.0
YYD3_k127_4903827_1 Uncharacterized protein conserved in bacteria (DUF2090) K03338 - 2.7.1.92 1.098e-227 724.0
YYD3_k127_4903827_2 KduI/IolB family K03337 - 5.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 346.0
YYD3_k127_4903827_3 Sugar isomerase (SIS) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003676 252.0
YYD3_k127_4903827_4 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000002022 238.0
YYD3_k127_4903827_5 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000001312 202.0
YYD3_k127_4917358_0 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 2.8e-316 975.0
YYD3_k127_4917358_1 Major facilitator Superfamily - - - 0.00000000000000000000004885 113.0
YYD3_k127_4917358_2 Fe-S protein K06938 - - 0.000001606 50.0
YYD3_k127_5006998_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 1.099e-243 759.0
YYD3_k127_5006998_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 612.0
YYD3_k127_5006998_10 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 401.0
YYD3_k127_5006998_11 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 378.0
YYD3_k127_5006998_12 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007049 364.0
YYD3_k127_5006998_13 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 355.0
YYD3_k127_5006998_14 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 357.0
YYD3_k127_5006998_15 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 353.0
YYD3_k127_5006998_16 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 352.0
YYD3_k127_5006998_17 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 349.0
YYD3_k127_5006998_18 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 325.0
YYD3_k127_5006998_19 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 315.0
YYD3_k127_5006998_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 596.0
YYD3_k127_5006998_20 PFAM ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 324.0
YYD3_k127_5006998_21 Alternative oxidase K17893 - 1.10.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 302.0
YYD3_k127_5006998_22 CHASE2 K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 321.0
YYD3_k127_5006998_23 COG0524 Sugar kinases, ribokinase family K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006289 297.0
YYD3_k127_5006998_24 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 293.0
YYD3_k127_5006998_25 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003278 289.0
YYD3_k127_5006998_26 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001267 284.0
YYD3_k127_5006998_27 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002037 287.0
YYD3_k127_5006998_28 GDP-mannose mannosyl hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002366 254.0
YYD3_k127_5006998_29 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.000000000000000000000000000000000000000000000000000000000004617 218.0
YYD3_k127_5006998_3 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 537.0
YYD3_k127_5006998_30 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000001717 199.0
YYD3_k127_5006998_31 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000005036 192.0
YYD3_k127_5006998_32 Phospholipid N-methyltransferase K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000001323 192.0
YYD3_k127_5006998_33 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000002391 176.0
YYD3_k127_5006998_34 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000000000000000000000000000001784 176.0
YYD3_k127_5006998_35 Cold shock protein domain K03704 - - 0.00000000000000000000000000000000000000000000151 172.0
YYD3_k127_5006998_36 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000003382 162.0
YYD3_k127_5006998_37 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000008841 161.0
YYD3_k127_5006998_38 Cyclophilin-like K09143 - - 0.0000000000000000000000000000000000004657 143.0
YYD3_k127_5006998_39 Ring hydroxylating subunit beta family protein 1 - - - 0.00000000000000000000000002755 115.0
YYD3_k127_5006998_4 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 529.0
YYD3_k127_5006998_40 PFAM FecR protein - - - 0.000000000000000000000002582 111.0
YYD3_k127_5006998_41 Cytochrome c - - - 0.000000000000000001176 92.0
YYD3_k127_5006998_42 ChaB K06197 - - 0.000000000000000007597 86.0
YYD3_k127_5006998_43 - - - - 0.00000000000000001831 88.0
YYD3_k127_5006998_44 pfam rdd - - - 0.00000000000002116 82.0
YYD3_k127_5006998_45 - - - - 0.0000000000001541 78.0
YYD3_k127_5006998_46 Transcriptional regulator - - - 0.000000000005194 74.0
YYD3_k127_5006998_47 Putative esterase - - - 0.000001171 51.0
YYD3_k127_5006998_48 Bacterial extracellular solute-binding protein K02027 - - 0.000003056 49.0
YYD3_k127_5006998_49 Transcriptional regulator - - - 0.0006324 48.0
YYD3_k127_5006998_5 amino acid K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 524.0
YYD3_k127_5006998_6 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 481.0
YYD3_k127_5006998_7 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 456.0
YYD3_k127_5006998_8 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008654 455.0
YYD3_k127_5006998_9 Rieske 2Fe-2S domain protein K14748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 431.0
YYD3_k127_50553_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006076 268.0
YYD3_k127_50553_1 FecR protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001159 255.0
YYD3_k127_50553_10 - - - - 0.000047 50.0
YYD3_k127_50553_2 - - - - 0.000000000000000000000000000000006403 132.0
YYD3_k127_50553_3 - - - - 0.0000000000000000000000000003741 122.0
YYD3_k127_50553_4 Psort location Extracellular, score - - - 0.0000000000000008186 84.0
YYD3_k127_50553_5 - - - - 0.000000000009519 76.0
YYD3_k127_50553_6 Type III secretion system lipoprotein chaperone (YscW) K09914 - - 0.00000000003006 75.0
YYD3_k127_50553_7 FOG TPR repeat, SEL1 subfamily K07126,K13582 - - 0.00001355 51.0
YYD3_k127_50553_8 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00001451 55.0
YYD3_k127_50553_9 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00001451 55.0
YYD3_k127_5056018_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 578.0
YYD3_k127_5056018_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 550.0
YYD3_k127_5056018_10 - - - - 0.0004737 49.0
YYD3_k127_5056018_2 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 422.0
YYD3_k127_5056018_3 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000002527 239.0
YYD3_k127_5056018_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000005445 204.0
YYD3_k127_5056018_5 - - - - 0.000000000000000000000000000000000000000000000000002542 190.0
YYD3_k127_5056018_6 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000005811 164.0
YYD3_k127_5056018_7 ABC-type multidrug transport system, ATPase and permease K18890 - - 0.0000000000000000000000000000000000005283 159.0
YYD3_k127_5056018_9 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000003356 51.0
YYD3_k127_5061021_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007134 602.0
YYD3_k127_5061021_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 397.0
YYD3_k127_5061021_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 359.0
YYD3_k127_5061021_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 346.0
YYD3_k127_5107636_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 2.816e-238 743.0
YYD3_k127_5107636_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 9.494e-207 656.0
YYD3_k127_5107636_10 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009296 363.0
YYD3_k127_5107636_11 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 358.0
YYD3_k127_5107636_12 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003894 355.0
YYD3_k127_5107636_13 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 325.0
YYD3_k127_5107636_14 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 319.0
YYD3_k127_5107636_15 protein conserved in bacteria K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 302.0
YYD3_k127_5107636_16 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000008631 235.0
YYD3_k127_5107636_17 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000005828 228.0
YYD3_k127_5107636_18 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000006192 196.0
YYD3_k127_5107636_19 COG2825 Outer membrane protein - - - 0.000000000000000000000000000002296 128.0
YYD3_k127_5107636_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009327 586.0
YYD3_k127_5107636_3 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 563.0
YYD3_k127_5107636_4 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 512.0
YYD3_k127_5107636_5 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006686 492.0
YYD3_k127_5107636_6 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 437.0
YYD3_k127_5107636_7 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 427.0
YYD3_k127_5107636_8 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 409.0
YYD3_k127_5107636_9 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 411.0
YYD3_k127_5122233_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000004703 239.0
YYD3_k127_5122233_1 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000004864 202.0
YYD3_k127_5122233_2 ubiquinone menaquinone biosynthesis methyltransferase - - - 0.00000000000000000000000000000000000000000000000000005952 196.0
YYD3_k127_5122233_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000005207 186.0
YYD3_k127_5122233_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000004106 161.0
YYD3_k127_5122233_5 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000002853 170.0
YYD3_k127_5122233_6 Tellurite resistance protein TerB - - - 0.00000000000004552 81.0
YYD3_k127_5122233_7 - - - - 0.00000003399 60.0
YYD3_k127_5122233_8 - - - - 0.0000006531 55.0
YYD3_k127_5122233_9 PilZ domain - - - 0.0002045 50.0
YYD3_k127_5132964_0 Protein of unknown function (DUF521) K09123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 535.0
YYD3_k127_5132964_1 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 527.0
YYD3_k127_5132964_2 racemase activity, acting on amino acids and derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 373.0
YYD3_k127_5132964_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000021 157.0
YYD3_k127_5132964_4 Protein of unknown function DUF126 K09128 - - 0.0000000000000000000000000001711 119.0
YYD3_k127_5214586_0 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 2.083e-275 859.0
YYD3_k127_5214586_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 9.788e-249 790.0
YYD3_k127_5214586_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 534.0
YYD3_k127_5214586_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 495.0
YYD3_k127_5214586_4 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000002242 230.0
YYD3_k127_5214586_5 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000002656 112.0
YYD3_k127_5214586_6 - - - - 0.0000000000000000000000002314 116.0
YYD3_k127_5273882_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 6.442e-282 872.0
YYD3_k127_5273882_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 2.543e-251 782.0
YYD3_k127_5273882_10 ABC transporter substrate binding protein K01989 - - 0.0000000000002151 71.0
YYD3_k127_5273882_2 RESPONSE REGULATOR receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 567.0
YYD3_k127_5273882_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 490.0
YYD3_k127_5273882_4 Bacterial protein of unknown function (DUF899) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 401.0
YYD3_k127_5273882_5 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 386.0
YYD3_k127_5273882_6 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 367.0
YYD3_k127_5273882_7 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000003453 258.0
YYD3_k127_5273882_8 - - - - 0.000000000000000000000000000000000000000000000005194 176.0
YYD3_k127_5273882_9 FR47-like protein - - - 0.000000000000000000000000000000000001333 145.0
YYD3_k127_5278963_0 DNA polymerase K02337 - 2.7.7.7 0.0 1490.0
YYD3_k127_5278963_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 1.696e-272 848.0
YYD3_k127_5278963_10 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004219 273.0
YYD3_k127_5278963_11 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008965 264.0
YYD3_k127_5278963_12 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000001138 276.0
YYD3_k127_5278963_13 COG0346 Lactoylglutathione lyase and related lyases K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000208 236.0
YYD3_k127_5278963_14 Protein of unknown function (DUF1467) - - - 0.00000000000000000000002263 103.0
YYD3_k127_5278963_15 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000007376 98.0
YYD3_k127_5278963_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 3.908e-237 742.0
YYD3_k127_5278963_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 1.29e-216 692.0
YYD3_k127_5278963_4 hydrolase of the metallo-beta-lactamase superfamily K12574 - - 1.119e-205 661.0
YYD3_k127_5278963_5 Permease family K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 595.0
YYD3_k127_5278963_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 596.0
YYD3_k127_5278963_7 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 558.0
YYD3_k127_5278963_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 374.0
YYD3_k127_5278963_9 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 304.0
YYD3_k127_5291241_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 8.819e-317 1000.0
YYD3_k127_5291241_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 4.818e-311 964.0
YYD3_k127_5291241_10 transcriptional - - - 0.00000000000000000000000000000000009286 139.0
YYD3_k127_5291241_11 Diguanylate cyclase K13590 - 2.7.7.65 0.0000000000000000000000006036 112.0
YYD3_k127_5291241_12 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000611 106.0
YYD3_k127_5291241_13 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000003571 81.0
YYD3_k127_5291241_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 553.0
YYD3_k127_5291241_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 454.0
YYD3_k127_5291241_4 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 343.0
YYD3_k127_5291241_5 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008563 268.0
YYD3_k127_5291241_6 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001012 244.0
YYD3_k127_5291241_7 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000003468 209.0
YYD3_k127_5291241_8 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000001248 192.0
YYD3_k127_5291241_9 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000002716 172.0
YYD3_k127_5293575_0 Transport of potassium into the cell K03549 - - 1.927e-209 669.0
YYD3_k127_5293575_1 Phage portal protein - - - 0.0000000000000000000000000000000000000217 150.0
YYD3_k127_5293575_2 Phage prohead protease, HK97 family - - - 0.0000000000000000000000000000000000001316 156.0
YYD3_k127_5293575_3 GYD domain - - - 0.000000000000000000000000000005115 123.0
YYD3_k127_5293575_4 domain, Protein - - - 0.0005002 48.0
YYD3_k127_5310000_0 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 604.0
YYD3_k127_5310000_1 COG5285 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 417.0
YYD3_k127_5310000_2 ABC transporter substrate binding protein K01989 - - 0.000006978 48.0
YYD3_k127_5310000_3 Transposase DDE domain - - - 0.00001043 51.0
YYD3_k127_5327538_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 2.637e-319 984.0
YYD3_k127_5327538_1 oligoendopeptidase F K08602 - - 9.372e-270 843.0
YYD3_k127_5327538_2 ABC1 family - - - 2.472e-211 664.0
YYD3_k127_5327538_3 chorismate binding enzyme K13503 - 4.1.3.27 7.723e-209 673.0
YYD3_k127_5327538_4 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 1.736e-206 659.0
YYD3_k127_5327538_5 PFAM NAD dependent epimerase dehydratase family K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 436.0
YYD3_k127_5327538_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000005433 123.0
YYD3_k127_5327538_7 dTDP-4-dehydrorhamnose reductase K00067 - 1.1.1.133 0.00000003227 61.0
YYD3_k127_5327538_8 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0003772 48.0
YYD3_k127_535089_0 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008544 533.0
YYD3_k127_535089_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 497.0
YYD3_k127_535089_2 Linear amide C-N hydrolases, choloylglycine hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000171 266.0
YYD3_k127_535089_3 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000004078 135.0
YYD3_k127_535089_4 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000000002766 137.0
YYD3_k127_535089_5 Aldehyde dehydrogenase family K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.000000000000001003 80.0
YYD3_k127_5351234_0 Cache domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 496.0
YYD3_k127_5351234_1 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007563 324.0
YYD3_k127_5351234_10 PFAM RNA binding S1 domain protein K08301 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008996,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 - 0.0000000000000000000000000000000000000000000009069 182.0
YYD3_k127_5351234_11 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000000149 140.0
YYD3_k127_5351234_12 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000004829 69.0
YYD3_k127_5351234_13 - - - - 0.000003373 51.0
YYD3_k127_5351234_2 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001204 259.0
YYD3_k127_5351234_3 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002308 258.0
YYD3_k127_5351234_4 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002834 250.0
YYD3_k127_5351234_5 Uncharacterised protein family (UPF0262) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008227 232.0
YYD3_k127_5351234_6 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000002402 227.0
YYD3_k127_5351234_7 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000003301 232.0
YYD3_k127_5351234_8 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000002238 201.0
YYD3_k127_5351234_9 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000001781 191.0
YYD3_k127_5364495_0 Protein of unknown function (DUF3141) - - - 6.399e-287 899.0
YYD3_k127_5364495_1 PFAM Xanthine uracil vitamin C permease K02824 - - 9.445e-195 615.0
YYD3_k127_5364495_10 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 380.0
YYD3_k127_5364495_11 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 313.0
YYD3_k127_5364495_12 mandelate racemase muconate lactonizing K01684 - 4.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 325.0
YYD3_k127_5364495_13 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 310.0
YYD3_k127_5364495_14 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 302.0
YYD3_k127_5364495_15 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001159 284.0
YYD3_k127_5364495_16 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001782 274.0
YYD3_k127_5364495_17 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001785 266.0
YYD3_k127_5364495_18 Short-chain dehydrogenase reductase SDR K00059,K18337 - 1.1.1.100,1.1.1.173,1.1.1.377,1.1.1.378 0.000000000000000000000000000000000000000000000000000000000000000004324 233.0
YYD3_k127_5364495_19 IMP dehydrogenase activity - - - 0.0000000000000000000000000000000000000000008043 160.0
YYD3_k127_5364495_2 (ABC) transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 602.0
YYD3_k127_5364495_20 IMP dehydrogenase activity - - - 0.0000000000000000000000000000000000000002542 154.0
YYD3_k127_5364495_21 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.000000000000000000000000000000000005176 144.0
YYD3_k127_5364495_22 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000001575 124.0
YYD3_k127_5364495_23 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000005314 100.0
YYD3_k127_5364495_24 PRC-barrel domain - - - 0.0000000000000000009571 94.0
YYD3_k127_5364495_25 - - - - 0.000000000000001923 87.0
YYD3_k127_5364495_26 - - - - 0.0000004135 56.0
YYD3_k127_5364495_3 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 564.0
YYD3_k127_5364495_4 Methionine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004975 522.0
YYD3_k127_5364495_5 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 504.0
YYD3_k127_5364495_6 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 460.0
YYD3_k127_5364495_7 Phosphate acetyl/butaryl transferase K00625,K00634 - 2.3.1.19,2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 439.0
YYD3_k127_5364495_8 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005208 420.0
YYD3_k127_5364495_9 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 400.0
YYD3_k127_5414164_0 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 413.0
YYD3_k127_5414164_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 329.0
YYD3_k127_5414164_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002016 297.0
YYD3_k127_5414164_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007171 282.0
YYD3_k127_5414164_4 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003004 261.0
YYD3_k127_5414164_5 dolichol-phosphate mannosyltransferase - - - 0.000000000000000008646 87.0
YYD3_k127_541699_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1185.0
YYD3_k127_541699_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 6.162e-317 989.0
YYD3_k127_541699_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 352.0
YYD3_k127_541699_3 transcriptional regulator - - - 0.00000000000000000000000000000000000001532 153.0
YYD3_k127_541699_4 Helix-turn-helix domain K07497 - - 0.0000000000000000001325 90.0
YYD3_k127_541699_5 - - - - 0.0000000000000000005491 91.0
YYD3_k127_541699_6 Recombinase zinc beta ribbon domain - - - 0.000000003995 61.0
YYD3_k127_541699_7 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000000004155 62.0
YYD3_k127_5437927_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain K13482 - 1.17.1.4 1.101e-308 964.0
YYD3_k127_5437927_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 1.505e-202 639.0
YYD3_k127_5437927_10 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 241.0
YYD3_k127_5437927_11 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000003804 172.0
YYD3_k127_5437927_12 TRAP transporter solute receptor K07080 - - 0.000000000000000000000000000003459 121.0
YYD3_k127_5437927_13 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000000003149 112.0
YYD3_k127_5437927_2 Xanthine dehydrogenase iron-sulfur cluster and FAD-binding subunit A K13481 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 531.0
YYD3_k127_5437927_3 Alcohol dehydrogenase GroES-like domain K00098 - 1.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009419 442.0
YYD3_k127_5437927_4 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007231 434.0
YYD3_k127_5437927_5 ATPase with chaperone activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 416.0
YYD3_k127_5437927_6 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000411 361.0
YYD3_k127_5437927_7 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 349.0
YYD3_k127_5437927_8 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007196 313.0
YYD3_k127_5437927_9 Dihydrodipicolinate synthetase family K13876 - 4.2.1.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 306.0
YYD3_k127_5438730_0 Glycosyl hydrolases family 15 - - - 6.947e-235 742.0
YYD3_k127_5438730_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02035 - - 3.318e-227 715.0
YYD3_k127_5438730_10 ABC transporter K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008721 339.0
YYD3_k127_5438730_11 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 312.0
YYD3_k127_5438730_12 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001105 295.0
YYD3_k127_5438730_13 haloacid dehalogenase, type II K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000003379 271.0
YYD3_k127_5438730_14 spore germination - - - 0.000000000000000000000000000000000000000000000000000000000000000000003968 244.0
YYD3_k127_5438730_15 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000000000000000000000004384 217.0
YYD3_k127_5438730_16 Oxidoreductase FAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000001933 213.0
YYD3_k127_5438730_17 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000000000000000000003184 197.0
YYD3_k127_5438730_18 Bacterial regulatory proteins, tetR family K09017 - - 0.00000000000000000000000000000000000000000000000354 181.0
YYD3_k127_5438730_19 Short-chain dehydrogenase reductase sdr - - - 0.000000000000002347 76.0
YYD3_k127_5438730_2 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 564.0
YYD3_k127_5438730_20 PFAM CBS domain containing protein - - - 0.00000000000002991 76.0
YYD3_k127_5438730_21 - - - - 0.0000004792 57.0
YYD3_k127_5438730_22 Sel1-like repeats. - - - 0.0001293 53.0
YYD3_k127_5438730_3 Binding-protein-dependent transport system inner membrane component K02033 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 515.0
YYD3_k127_5438730_4 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 511.0
YYD3_k127_5438730_5 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 440.0
YYD3_k127_5438730_6 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 442.0
YYD3_k127_5438730_7 P-aminobenzoate N-oxygenase AurF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 407.0
YYD3_k127_5438730_8 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 398.0
YYD3_k127_5438730_9 ATPases associated with a variety of cellular activities K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 400.0
YYD3_k127_5466707_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.27e-278 870.0
YYD3_k127_5466707_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 510.0
YYD3_k127_5466707_2 Catalyzes the formation of succinate from succinate semialdehyde K00135 GO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004777,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006105,GO:0006520,GO:0006536,GO:0006538,GO:0006540,GO:0006807,GO:0008150,GO:0008152,GO:0009013,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009448,GO:0009450,GO:0009987,GO:0016054,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0019752,GO:0032787,GO:0036094,GO:0042133,GO:0042135,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 383.0
YYD3_k127_5466707_3 Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress K01091 - 3.1.3.18 0.000000004258 59.0
YYD3_k127_5466765_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1636.0
YYD3_k127_5466765_1 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 4.764e-260 807.0
YYD3_k127_5466765_10 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 499.0
YYD3_k127_5466765_11 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 471.0
YYD3_k127_5466765_12 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 466.0
YYD3_k127_5466765_13 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 476.0
YYD3_k127_5466765_14 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 443.0
YYD3_k127_5466765_15 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 426.0
YYD3_k127_5466765_16 Protein of unknown function (DUF2817) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 392.0
YYD3_k127_5466765_17 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00065 - 1.1.1.127 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 357.0
YYD3_k127_5466765_18 Iron/manganese superoxide dismutases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 348.0
YYD3_k127_5466765_19 Chromate resistance exported protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565 349.0
YYD3_k127_5466765_2 formate hydrogenlyase subunit 3 multisubunit Na H antiporter, MnhD subunit K05568,K12137 - - 3.384e-228 719.0
YYD3_k127_5466765_20 Domain of unknown function (DUF4347) K21449 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 370.0
YYD3_k127_5466765_21 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 352.0
YYD3_k127_5466765_22 nucleoside-diphosphate sugar epimerase K07276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 317.0
YYD3_k127_5466765_23 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488 330.0
YYD3_k127_5466765_24 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008873 277.0
YYD3_k127_5466765_25 COG1522 Transcriptional regulators - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000462 265.0
YYD3_k127_5466765_26 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002566 247.0
YYD3_k127_5466765_27 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000093 239.0
YYD3_k127_5466765_28 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001518 243.0
YYD3_k127_5466765_29 Domain of unknown function (DUF4040) K05566 - - 0.0000000000000000000000000000000000000000000000000000000000001152 223.0
YYD3_k127_5466765_3 Proton-conducting membrane transporter - - - 9.341e-206 651.0
YYD3_k127_5466765_30 - - - - 0.0000000000000000000000000000000000000000000000000000000000002224 217.0
YYD3_k127_5466765_31 Domain related to MnhB subunit of Na+/H+ antiporter K05566 - - 0.000000000000000000000000000000000000000000000000002192 194.0
YYD3_k127_5466765_32 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000409 186.0
YYD3_k127_5466765_33 COG1006 Multisubunit Na H antiporter, MnhC subunit K05567 - - 0.00000000000000000000000000000000000000000000000005683 180.0
YYD3_k127_5466765_34 COG1863 Multisubunit Na H antiporter MnhE subunit K05569 - - 0.000000000000000000000000000000000000000000000006518 178.0
YYD3_k127_5466765_35 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000001489 176.0
YYD3_k127_5466765_36 monovalent cation:proton antiporter activity K05571 - - 0.0000000000000000000000000000000000001244 143.0
YYD3_k127_5466765_37 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000009296 134.0
YYD3_k127_5466765_38 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000000003079 122.0
YYD3_k127_5466765_39 Protein of unknown function (DUF2927) - - - 0.0000000000000000000000005065 116.0
YYD3_k127_5466765_4 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 610.0
YYD3_k127_5466765_40 - - - - 0.00000000000000000004418 95.0
YYD3_k127_5466765_41 - - - - 0.000000000000002994 78.0
YYD3_k127_5466765_42 Dodecin K09165 - - 0.000000000000009605 77.0
YYD3_k127_5466765_43 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000001473 77.0
YYD3_k127_5466765_5 Cysteine-rich domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 608.0
YYD3_k127_5466765_6 Proton-conducting membrane transporter K00343,K05568 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 581.0
YYD3_k127_5466765_7 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 539.0
YYD3_k127_5466765_8 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 510.0
YYD3_k127_5466765_9 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009535 534.0
YYD3_k127_5466946_0 Branched-chain amino acid transport system / permease component K01997,K01998 - - 5.642e-266 831.0
YYD3_k127_5466946_1 Amidohydrolase family K15358 - 3.5.2.18 8.742e-205 643.0
YYD3_k127_5466946_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003114 380.0
YYD3_k127_5466946_3 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 350.0
YYD3_k127_5466946_4 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 343.0
YYD3_k127_5466946_5 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 319.0
YYD3_k127_5466946_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000000000000000001847 186.0
YYD3_k127_5466946_7 Usg-like family - - - 0.00000000000000000000000000000000004051 139.0
YYD3_k127_5466946_8 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000002464 114.0
YYD3_k127_5466946_9 Sigma-54 interaction domain - - - 0.0001428 53.0
YYD3_k127_5484779_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1773.0
YYD3_k127_5484779_1 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 3.611e-223 700.0
YYD3_k127_5484779_10 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006986 285.0
YYD3_k127_5484779_11 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002819 264.0
YYD3_k127_5484779_12 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000001145 229.0
YYD3_k127_5484779_13 Chlorite dismutase - - - 0.0000000000000000000000000000000000000000000000000000000000009078 217.0
YYD3_k127_5484779_14 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000000000001758 205.0
YYD3_k127_5484779_15 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000002169 185.0
YYD3_k127_5484779_16 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000002668 184.0
YYD3_k127_5484779_17 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000004181 169.0
YYD3_k127_5484779_18 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000005495 160.0
YYD3_k127_5484779_19 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000001954 157.0
YYD3_k127_5484779_2 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 569.0
YYD3_k127_5484779_20 NADH ubiquinone oxidoreductase 17.2 kD subunit - - - 0.0000000000000000000000000000000000000005751 153.0
YYD3_k127_5484779_21 protein conserved in bacteria - - - 0.00000000000000000000000000000000000002032 152.0
YYD3_k127_5484779_22 - - - - 0.000000000000000000000000000008293 123.0
YYD3_k127_5484779_23 transport - - - 0.00000000000000000004929 98.0
YYD3_k127_5484779_24 Sel1-like repeats. K13582 - - 0.000001196 59.0
YYD3_k127_5484779_3 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007529 556.0
YYD3_k127_5484779_4 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 525.0
YYD3_k127_5484779_5 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 468.0
YYD3_k127_5484779_6 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 456.0
YYD3_k127_5484779_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 433.0
YYD3_k127_5484779_8 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 408.0
YYD3_k127_5484779_9 ornithine cyclodeaminase activity K01750,K18258,K19244 - 1.4.1.1,1.5.1.25,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 342.0
YYD3_k127_5489549_0 Asp/Glu/Hydantoin racemase K01779 - 5.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 397.0
YYD3_k127_5489549_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 295.0
YYD3_k127_5489549_2 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001972 263.0
YYD3_k127_5489549_3 Saccharopine dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000001497 205.0
YYD3_k127_5489549_4 - - - - 0.00000000000000005089 94.0
YYD3_k127_5489549_5 acyl-CoA transferase - - - 0.0000000000001075 79.0
YYD3_k127_5489549_6 - - - - 0.0000000000152 66.0
YYD3_k127_5499970_0 synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 469.0
YYD3_k127_5499970_1 COG4531 ABC-type Zn2 transport system, periplasmic component surface adhesin K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 328.0
YYD3_k127_5499970_10 SnoaL-like domain - - - 0.00000000000000000000000001679 124.0
YYD3_k127_5499970_2 ABC transporter K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 318.0
YYD3_k127_5499970_3 COG1108 ABC-type Mn2 Zn2 transport systems permease components K09816 GO:0000006,GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0042221,GO:0044464,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 315.0
YYD3_k127_5499970_4 Protein of unknown function (DUF1365) K09701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 304.0
YYD3_k127_5499970_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006701 278.0
YYD3_k127_5499970_6 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006667 255.0
YYD3_k127_5499970_7 NAD FAD-binding protein K06954 - - 0.0000000000000000000000000000000000000000000000000000000001469 211.0
YYD3_k127_5499970_8 Belongs to the Fur family K09823 - - 0.000000000000000000000000000000000000000000000000000001231 198.0
YYD3_k127_5499970_9 HupE / UreJ protein K03192 - - 0.0000000000000000000000000000000000000000000007148 173.0
YYD3_k127_5501030_0 Penicillin amidase K01434 - 3.5.1.11 9.609e-228 730.0
YYD3_k127_5501030_1 Belongs to the aldehyde dehydrogenase family - - - 2.36e-210 658.0
YYD3_k127_5501030_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 475.0
YYD3_k127_5501030_3 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 444.0
YYD3_k127_5501030_4 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007774 276.0
YYD3_k127_5501030_5 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000001067 238.0
YYD3_k127_5501030_6 Class II aldolase K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000006938 203.0
YYD3_k127_5501030_7 RDD family - - - 0.00008035 51.0
YYD3_k127_5583487_0 COG1194 A G-specific DNA glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 433.0
YYD3_k127_5583487_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 364.0
YYD3_k127_5583487_2 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.000000000000000000000000000000000000000000000000000001091 196.0
YYD3_k127_5583487_3 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000008918 188.0
YYD3_k127_5583487_4 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000002654 154.0
YYD3_k127_5583487_5 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives - - - 0.000000000000001185 83.0
YYD3_k127_5583487_6 - - - - 0.00000000000000189 85.0
YYD3_k127_5583487_7 - - - - 0.000000000002998 73.0
YYD3_k127_5583487_8 Transposase DDE domain - - - 0.00000000001986 69.0
YYD3_k127_5583487_9 Transposase DDE domain - - - 0.0000000004285 65.0
YYD3_k127_5599059_0 Adenylate - - - 1.437e-310 987.0
YYD3_k127_5599059_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.278e-293 918.0
YYD3_k127_5599059_10 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000000001406 192.0
YYD3_k127_5599059_11 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000009273 158.0
YYD3_k127_5599059_12 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000537 141.0
YYD3_k127_5599059_13 FCD - - - 0.00000000000000007447 89.0
YYD3_k127_5599059_14 transcription regulator containing HTH domain K18831 - - 0.0000000000000124 77.0
YYD3_k127_5599059_15 Sterol carrier protein - - - 0.00000000000005771 79.0
YYD3_k127_5599059_16 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000001064 58.0
YYD3_k127_5599059_2 Lipoprotein releasing system transmembrane protein LolC K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0098796,GO:0098797 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 556.0
YYD3_k127_5599059_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 518.0
YYD3_k127_5599059_4 Protein conserved in bacteria K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 397.0
YYD3_k127_5599059_5 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 325.0
YYD3_k127_5599059_6 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit K15751 - 1.14.12.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007846 325.0
YYD3_k127_5599059_7 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K05685,K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 305.0
YYD3_k127_5599059_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000636 274.0
YYD3_k127_5599059_9 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000001949 218.0
YYD3_k127_5601258_0 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 0.0 2126.0
YYD3_k127_5601258_1 ABC-type dipeptide transport system periplasmic component K02035 - - 1.454e-305 942.0
YYD3_k127_5601258_10 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 507.0
YYD3_k127_5601258_11 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 436.0
YYD3_k127_5601258_12 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 434.0
YYD3_k127_5601258_13 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 431.0
YYD3_k127_5601258_14 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 418.0
YYD3_k127_5601258_15 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 416.0
YYD3_k127_5601258_16 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 398.0
YYD3_k127_5601258_17 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 394.0
YYD3_k127_5601258_18 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007196 372.0
YYD3_k127_5601258_19 Nitrate reductase gamma subunit K00374 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 326.0
YYD3_k127_5601258_2 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 1.632e-297 939.0
YYD3_k127_5601258_20 Nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 325.0
YYD3_k127_5601258_21 protein involved in response to NO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 317.0
YYD3_k127_5601258_22 phosphohistidine phosphatase, SixA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004293 258.0
YYD3_k127_5601258_23 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004402 246.0
YYD3_k127_5601258_24 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000004076 246.0
YYD3_k127_5601258_25 DNA RNA non-specific endonuclease K01173 - - 0.000000000000000000000000000000000000000000000000000000000002117 220.0
YYD3_k127_5601258_26 - - - - 0.0000000000000000000000000000000000000000000000000000000002563 221.0
YYD3_k127_5601258_27 Nitrate reductase delta subunit K00373 - - 0.0000000000000000000000000000000000000000000000000000002026 204.0
YYD3_k127_5601258_28 AraC-binding-like domain - - - 0.0000000000000000000000000000000000000000000000278 183.0
YYD3_k127_5601258_29 - - - - 0.0000000000000000000000000000000000000975 147.0
YYD3_k127_5601258_3 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 9.809e-279 863.0
YYD3_k127_5601258_30 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K13642 - - 0.0000000000000000000000000000000000002146 150.0
YYD3_k127_5601258_31 - - - - 0.000000000000000000000000000000000252 139.0
YYD3_k127_5601258_32 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000002421 134.0
YYD3_k127_5601258_33 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.0000000000000000000000004479 107.0
YYD3_k127_5601258_34 Belongs to the ABC transporter superfamily K10823 - - 0.00000000002567 70.0
YYD3_k127_5601258_4 Major Facilitator Superfamily K02575 - - 5.665e-221 695.0
YYD3_k127_5601258_5 Major Facilitator Superfamily K02575 - - 2.458e-219 687.0
YYD3_k127_5601258_6 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 8.729e-212 671.0
YYD3_k127_5601258_7 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 582.0
YYD3_k127_5601258_8 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000561 551.0
YYD3_k127_5601258_9 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 541.0
YYD3_k127_5675582_0 protein related to plant photosystem II stability assembly factor - - - 1.123e-217 680.0
YYD3_k127_5675582_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000005407 235.0
YYD3_k127_5675582_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000005915 170.0
YYD3_k127_5675582_3 ThiS family K03636 - - 0.000000000000000000000000000000008063 132.0
YYD3_k127_5675582_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000003437 88.0
YYD3_k127_5681476_0 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 9.097e-244 767.0
YYD3_k127_5681476_1 Rod shape-determining protein MreB K03569 - - 9.087e-203 633.0
YYD3_k127_5681476_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 408.0
YYD3_k127_5681476_3 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006814 267.0
YYD3_k127_5681476_4 shape-determining protein K03571 - - 0.0000000000000000000000000000001163 140.0
YYD3_k127_5681476_5 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000003218 114.0
YYD3_k127_5763505_0 COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family K18459 - 3.5.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 496.0
YYD3_k127_5763505_1 Mg2 and Co2 transporter CorB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 489.0
YYD3_k127_5763505_10 Oxidoreductase FAD-binding domain K15765 - 1.18.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001443 275.0
YYD3_k127_5763505_11 MlaD protein K02067,K06192 - - 0.00000000000000000000000000000000000000000000000000000000000000000001639 244.0
YYD3_k127_5763505_12 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000000000000000000000000000000000000139 204.0
YYD3_k127_5763505_13 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000001008 197.0
YYD3_k127_5763505_14 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000005423 201.0
YYD3_k127_5763505_15 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000000000000006454 168.0
YYD3_k127_5763505_16 Haem-degrading - - - 0.000000000000000000000000000000000000000000002601 175.0
YYD3_k127_5763505_17 LysE type translocator - - - 0.000000000000000000000000000000000000000004874 162.0
YYD3_k127_5763505_18 Belongs to the BolA IbaG family K05527,K22066 - - 0.0000000000000000000000000000002241 126.0
YYD3_k127_5763505_19 Sterol carrier protein - - - 0.00000000000000000000000008681 123.0
YYD3_k127_5763505_2 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit K15751 - 1.14.12.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 481.0
YYD3_k127_5763505_20 Rieske-like [2Fe-2S] domain - - - 0.000000000000000000000006541 117.0
YYD3_k127_5763505_22 Ankyrin repeats (3 copies) K06867 - - 0.000000001559 64.0
YYD3_k127_5763505_23 Ribbon-helix-helix domain - - - 0.00000002255 59.0
YYD3_k127_5763505_3 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 478.0
YYD3_k127_5763505_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005252 423.0
YYD3_k127_5763505_5 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 394.0
YYD3_k127_5763505_6 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 363.0
YYD3_k127_5763505_7 Putative neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 364.0
YYD3_k127_5763505_8 hydrolase activity, acting on ester bonds K10216,K15756 - 3.7.1.13,3.7.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 320.0
YYD3_k127_5763505_9 Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols K04101,K15755 - 1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 311.0
YYD3_k127_5766419_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1033.0
YYD3_k127_5766419_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 3.818e-319 995.0
YYD3_k127_5766419_10 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000006705 228.0
YYD3_k127_5766419_11 Protein of unknown function - - - 0.0000000000000000000000000000000000000000000000000000000000002798 229.0
YYD3_k127_5766419_12 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000003531 134.0
YYD3_k127_5766419_13 GYD domain - - - 0.000000000000000000000000000001884 123.0
YYD3_k127_5766419_14 COG0515 Serine threonine protein kinase K12132 - 2.7.11.1 0.000006262 58.0
YYD3_k127_5766419_2 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 8.823e-207 678.0
YYD3_k127_5766419_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007445 501.0
YYD3_k127_5766419_4 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004231 471.0
YYD3_k127_5766419_5 Transcriptional regulator, AraC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 415.0
YYD3_k127_5766419_6 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 407.0
YYD3_k127_5766419_7 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 325.0
YYD3_k127_5766419_8 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 323.0
YYD3_k127_5766419_9 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004778 307.0
YYD3_k127_5814219_0 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 439.0
YYD3_k127_5814219_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 418.0
YYD3_k127_5814219_2 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 393.0
YYD3_k127_5814219_3 PFAM Mandelate racemase muconate lactonizing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 338.0
YYD3_k127_5814219_4 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000001626 218.0
YYD3_k127_5814219_5 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000001401 181.0
YYD3_k127_5814219_6 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000002008 191.0
YYD3_k127_5814219_7 MafB19-like deaminase - - - 0.0000000000000000000003682 110.0
YYD3_k127_5817226_0 Heat shock 70 kDa protein K04043 - - 0.0 1026.0
YYD3_k127_5817226_1 Acetyltransferase (GNAT) domain K01905,K09181,K22224 - 6.2.1.13 2.714e-314 985.0
YYD3_k127_5817226_10 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 356.0
YYD3_k127_5817226_11 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 325.0
YYD3_k127_5817226_12 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 321.0
YYD3_k127_5817226_13 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 317.0
YYD3_k127_5817226_14 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000001985 265.0
YYD3_k127_5817226_15 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007244 265.0
YYD3_k127_5817226_16 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000003772 208.0
YYD3_k127_5817226_17 Etoposide-induced protein 2.4 (EI24) K06203 - - 0.00000000000000000000000000000000000000000000000004536 187.0
YYD3_k127_5817226_18 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.000000000000000000000000000000000000000002097 166.0
YYD3_k127_5817226_19 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000007498 173.0
YYD3_k127_5817226_2 GTP-binding protein TypA K06207 - - 4.47e-305 944.0
YYD3_k127_5817226_20 integral membrane protein - - - 0.0000000000000000000000000000000000129 141.0
YYD3_k127_5817226_21 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000001811 143.0
YYD3_k127_5817226_22 amino acid - - - 0.00000000000000001284 86.0
YYD3_k127_5817226_24 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0001872 48.0
YYD3_k127_5817226_3 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 597.0
YYD3_k127_5817226_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 503.0
YYD3_k127_5817226_5 FAD binding domain K00103 - 1.1.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 505.0
YYD3_k127_5817226_6 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 484.0
YYD3_k127_5817226_7 Acetyl-coenzyme A transporter 1 K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 490.0
YYD3_k127_5817226_8 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 459.0
YYD3_k127_5817226_9 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006489 421.0
YYD3_k127_5836143_0 Carbamoyltransferase C-terminus K00612 - - 8.578e-212 667.0
YYD3_k127_5836143_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000006805 235.0
YYD3_k127_5836143_2 - - - - 0.000000000000000000000000004393 115.0
YYD3_k127_5836143_3 Pfam:Arch_ATPase K02450 - - 0.00000000000001981 87.0
YYD3_k127_5836143_4 - - - - 0.000000000000641 69.0
YYD3_k127_5836143_5 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.000000000001753 66.0
YYD3_k127_5841392_0 COG1840 ABC-type Fe3 transport system, periplasmic component K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006375 556.0
YYD3_k127_5841392_1 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 509.0
YYD3_k127_5841392_10 Belongs to the bacterial solute-binding protein 3 family K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 388.0
YYD3_k127_5841392_11 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 376.0
YYD3_k127_5841392_12 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007461 354.0
YYD3_k127_5841392_13 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 347.0
YYD3_k127_5841392_14 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 345.0
YYD3_k127_5841392_15 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 350.0
YYD3_k127_5841392_16 COG1177 ABC-type spermidine putrescine transport system, permease component II K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 322.0
YYD3_k127_5841392_17 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 321.0
YYD3_k127_5841392_18 Allophanate hydrolase K01457 - 3.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 316.0
YYD3_k127_5841392_19 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 295.0
YYD3_k127_5841392_2 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 501.0
YYD3_k127_5841392_20 COG0555 ABC-type sulfate transport system, permease component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 278.0
YYD3_k127_5841392_21 Allophanate hydrolase subunit 1 K01457 - 3.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000002186 248.0
YYD3_k127_5841392_22 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000388 249.0
YYD3_k127_5841392_23 cytosine deaminase K01485 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050228,GO:0050279 3.5.4.1 0.0000000000000000000000000000000000000000000000000000000000000000004658 237.0
YYD3_k127_5841392_24 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000006972 192.0
YYD3_k127_5841392_25 DoxX K15977 - - 0.00000000000000000000000000000001927 133.0
YYD3_k127_5841392_26 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000004421 131.0
YYD3_k127_5841392_27 Endoribonuclease L-PSP - - - 0.000000000000000000000000000392 120.0
YYD3_k127_5841392_28 ATPase with chaperone activity - - - 0.00000000006677 70.0
YYD3_k127_5841392_3 Cobalamin-independent synthase, Catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 489.0
YYD3_k127_5841392_4 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 468.0
YYD3_k127_5841392_5 Binding-protein-dependent transport system inner membrane component K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 438.0
YYD3_k127_5841392_6 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 433.0
YYD3_k127_5841392_7 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 420.0
YYD3_k127_5841392_8 amino acid ABC transporter K02029,K09971,K10002,K10037 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 398.0
YYD3_k127_5841392_9 TOBE domain K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 395.0
YYD3_k127_5847275_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1334.0
YYD3_k127_5847275_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1295.0
YYD3_k127_5847275_10 Belongs to the GcvT family K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 332.0
YYD3_k127_5847275_11 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 312.0
YYD3_k127_5847275_12 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 302.0
YYD3_k127_5847275_13 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 308.0
YYD3_k127_5847275_14 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004501 280.0
YYD3_k127_5847275_15 COG0438 Glycosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001744 276.0
YYD3_k127_5847275_16 pkhd-type hydroxylase K07336 - - 0.0000000000000000000000000000000000000000000000000000000003342 210.0
YYD3_k127_5847275_17 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000000002416 198.0
YYD3_k127_5847275_18 Scavenger mRNA decapping enzyme C-term binding - - - 0.00000000000000000000000000000000000000000000001072 174.0
YYD3_k127_5847275_19 COG2076 Membrane transporters of cations and cationic drugs K11741 - - 0.0000000000000000000000000000000000000000003275 161.0
YYD3_k127_5847275_2 Asparagine synthase K01953 - 6.3.5.4 1.336e-245 776.0
YYD3_k127_5847275_20 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.000000000000000000000000000000001039 130.0
YYD3_k127_5847275_21 relative of glutathione S-transferase, MAPEG superfamily K07136 - - 0.0000000000000000000002443 102.0
YYD3_k127_5847275_22 DMSO reductase anchor subunit K21309 - - 0.00000002354 57.0
YYD3_k127_5847275_3 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 602.0
YYD3_k127_5847275_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 579.0
YYD3_k127_5847275_5 tRNA (guanine-N7-)-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 529.0
YYD3_k127_5847275_6 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000903 476.0
YYD3_k127_5847275_7 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K19745 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 427.0
YYD3_k127_5847275_8 Chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 371.0
YYD3_k127_5847275_9 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 370.0
YYD3_k127_5898770_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 3.38e-317 979.0
YYD3_k127_5898770_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 448.0
YYD3_k127_5898770_10 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000003328 178.0
YYD3_k127_5898770_11 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000002261 164.0
YYD3_k127_5898770_12 succinate dehydrogenase K00242 - - 0.00000000000000000000000000000000004019 144.0
YYD3_k127_5898770_2 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 436.0
YYD3_k127_5898770_3 COG2030 Acyl dehydratase K14449 - 4.2.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 445.0
YYD3_k127_5898770_4 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 353.0
YYD3_k127_5898770_5 OpgC protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 330.0
YYD3_k127_5898770_6 Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP K00868 - 2.7.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000004492 252.0
YYD3_k127_5898770_7 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005099 244.0
YYD3_k127_5898770_8 threonine efflux protein - - - 0.0000000000000000000000000000000000000000000000000000002397 200.0
YYD3_k127_5898770_9 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000002711 185.0
YYD3_k127_593355_0 Lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000857 381.0
YYD3_k127_593355_1 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000003989 228.0
YYD3_k127_593355_2 Gram-negative-bacterium-type cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000000000001534 210.0
YYD3_k127_5942736_0 HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 323.0
YYD3_k127_5942736_1 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008441 289.0
YYD3_k127_5942736_2 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001297 239.0
YYD3_k127_5942736_3 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000000000001209 237.0
YYD3_k127_5942736_4 bond formation protein, DsbB - - - 0.00000000000000000000000000000000000000000003404 167.0
YYD3_k127_6000299_0 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 537.0
YYD3_k127_6000299_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000002928 231.0
YYD3_k127_6000299_2 Chloride channel - - - 0.0000000000000000000003295 102.0
YYD3_k127_6000299_3 membrane K07794 - - 0.000000001208 68.0
YYD3_k127_6012886_0 Ornithine cyclodeaminase/mu-crystallin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 540.0
YYD3_k127_6012886_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005171 499.0
YYD3_k127_6012886_10 Iron-containing alcohol dehydrogenase K00043 - 1.1.1.61 0.000000000000000000000000000000000000000000000000000000000000002976 224.0
YYD3_k127_6012886_11 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000008539 208.0
YYD3_k127_6012886_12 Holin of 3TMs, for gene-transfer release - - - 0.000000000000000000000000000002962 124.0
YYD3_k127_6012886_15 Protein of unknown function (DUF2939) - - - 0.0000004817 59.0
YYD3_k127_6012886_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 494.0
YYD3_k127_6012886_3 ABC transporter K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 414.0
YYD3_k127_6012886_4 of ABC-type glycine betaine transport system K05845 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 389.0
YYD3_k127_6012886_5 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 400.0
YYD3_k127_6012886_6 Belongs to the DapA family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 356.0
YYD3_k127_6012886_7 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 314.0
YYD3_k127_6012886_8 ABC-type proline glycine betaine transport systems permease component K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000000001056 241.0
YYD3_k127_6012886_9 Binding-protein-dependent transport system inner membrane component K05845,K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000002094 235.0
YYD3_k127_6048574_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 617.0
YYD3_k127_6048574_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 603.0
YYD3_k127_6048574_10 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000001032 226.0
YYD3_k127_6048574_11 Belongs to the DegT DnrJ EryC1 family K05957 - 2.6.1.50 0.000000000000000000000000000000000000000000000000000000000006827 214.0
YYD3_k127_6048574_12 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000003221 217.0
YYD3_k127_6048574_13 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.0000000000000000000000000000000000000000000000000006841 195.0
YYD3_k127_6048574_14 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000008704 180.0
YYD3_k127_6048574_15 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000004066 169.0
YYD3_k127_6048574_16 Methyltransferase domain - - - 0.00000000000000000000000000000002571 142.0
YYD3_k127_6048574_17 PFAM polysaccharide biosynthesis protein - - - 0.00000000000000000000000911 116.0
YYD3_k127_6048574_18 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.0000000000000004077 91.0
YYD3_k127_6048574_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 565.0
YYD3_k127_6048574_3 RmlD substrate binding domain K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 537.0
YYD3_k127_6048574_4 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 361.0
YYD3_k127_6048574_5 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 362.0
YYD3_k127_6048574_6 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 342.0
YYD3_k127_6048574_7 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 343.0
YYD3_k127_6048574_8 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008106 315.0
YYD3_k127_6048574_9 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD3_k127_6048711_0 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 426.0
YYD3_k127_6048711_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 391.0
YYD3_k127_6048711_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000000006526 163.0
YYD3_k127_6119141_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01907 - 6.2.1.16 8.734e-313 973.0
YYD3_k127_6119141_1 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 1.319e-282 897.0
YYD3_k127_6119141_10 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 343.0
YYD3_k127_6119141_11 Ion channel K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 317.0
YYD3_k127_6119141_12 Inhibitor of apoptosis-promoting Bax1 K06890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 304.0
YYD3_k127_6119141_13 ATPases associated with a variety of cellular activities K02003 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 309.0
YYD3_k127_6119141_14 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006351 297.0
YYD3_k127_6119141_15 Uracil-DNA glycosylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001642 278.0
YYD3_k127_6119141_16 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005573 274.0
YYD3_k127_6119141_17 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000007014 241.0
YYD3_k127_6119141_18 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000004684 233.0
YYD3_k127_6119141_19 DinB family - - - 0.0000000000000000000000000000000000000000000000000000000007357 205.0
YYD3_k127_6119141_2 Berberine and berberine like - - - 2.292e-222 697.0
YYD3_k127_6119141_20 Zincin-like metallopeptidase - - - 0.000000000000000000000000000000000000000000000000000005468 194.0
YYD3_k127_6119141_21 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000000000000000001692 189.0
YYD3_k127_6119141_22 low molecular weight K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000001592 183.0
YYD3_k127_6119141_23 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 - 3.5.4.5 0.000000000000000000000000000000000000000000002318 169.0
YYD3_k127_6119141_24 - - - - 0.000000000000000000000000000000000000001358 155.0
YYD3_k127_6119141_25 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.000000000000000000000000000000000002326 137.0
YYD3_k127_6119141_26 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000005075 139.0
YYD3_k127_6119141_27 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000000004887 117.0
YYD3_k127_6119141_28 acetyltransferase K03824 - - 0.0000000000000003726 79.0
YYD3_k127_6119141_3 Aldehyde dehydrogenase family K00128 - 1.2.1.3 5.948e-217 685.0
YYD3_k127_6119141_4 alcohol dehydrogenase K00001,K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007515 520.0
YYD3_k127_6119141_5 Aldo keto reductase - GO:0003674,GO:0003824,GO:0004033,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016491,GO:0016614,GO:0016616,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034198,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0071496,GO:1990928 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 434.0
YYD3_k127_6119141_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 374.0
YYD3_k127_6119141_7 FIST_C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005626 385.0
YYD3_k127_6119141_8 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 360.0
YYD3_k127_6119141_9 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 354.0
YYD3_k127_6142147_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1358.0
YYD3_k127_6142147_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 5.308e-242 765.0
YYD3_k127_6142147_10 COG2030 Acyl dehydratase K17865 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0022607,GO:0042620,GO:0042621,GO:0043933,GO:0044085,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901576 4.2.1.55 0.0000000000000000000000000000000000000000000000000000000006605 207.0
YYD3_k127_6142147_11 Protein of unknown function (DUF3035) - - - 0.0000000000000000000000000000000000000000000000000000001325 200.0
YYD3_k127_6142147_12 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000000000000000003935 198.0
YYD3_k127_6142147_13 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000003619 159.0
YYD3_k127_6142147_14 cytochrome - - - 0.0000000000000000000000000009582 115.0
YYD3_k127_6142147_15 - - - - 0.0000000000000001521 87.0
YYD3_k127_6142147_16 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.0000001598 52.0
YYD3_k127_6142147_2 COG2041 Sulfite oxidase and related enzymes K00387 - 1.8.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 593.0
YYD3_k127_6142147_3 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004529 493.0
YYD3_k127_6142147_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 439.0
YYD3_k127_6142147_5 Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 428.0
YYD3_k127_6142147_6 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 334.0
YYD3_k127_6142147_7 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003389 327.0
YYD3_k127_6142147_8 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 331.0
YYD3_k127_6142147_9 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000000002545 212.0
YYD3_k127_614339_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1641.0
YYD3_k127_614339_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1277.0
YYD3_k127_614339_2 COG1180 Pyruvate-formate lyase-activating enzyme - - - 4.732e-255 794.0
YYD3_k127_614339_3 CO dehydrogenase flavoprotein C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 325.0
YYD3_k127_614339_4 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 306.0
YYD3_k127_614339_5 Amino acid synthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006757 304.0
YYD3_k127_614339_6 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 300.0
YYD3_k127_614339_7 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007108 286.0
YYD3_k127_614339_8 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000001047 162.0
YYD3_k127_6154447_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.514e-248 786.0
YYD3_k127_6154447_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 433.0
YYD3_k127_61548_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1442.0
YYD3_k127_61548_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 6.382e-302 940.0
YYD3_k127_61548_10 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 344.0
YYD3_k127_61548_11 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003325 331.0
YYD3_k127_61548_12 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 316.0
YYD3_k127_61548_13 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 315.0
YYD3_k127_61548_14 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 306.0
YYD3_k127_61548_15 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006073 279.0
YYD3_k127_61548_16 dithiol-disulfide isomerase involved in polyketide biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000001765 239.0
YYD3_k127_61548_17 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001029 226.0
YYD3_k127_61548_18 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.0000000000000000000000000000000000000000000000000000000007659 203.0
YYD3_k127_61548_19 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000000000000000000000001323 207.0
YYD3_k127_61548_2 AMP-binding enzyme C-terminal domain K02182 - 6.2.1.48 2.292e-235 745.0
YYD3_k127_61548_20 Protein of unknown function (DUF1428) - - - 0.0000000000000000000000000000000000000000000000000000002063 198.0
YYD3_k127_61548_21 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.000000000000000000000000000000000000000000000000000001505 198.0
YYD3_k127_61548_22 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000000000000000009484 186.0
YYD3_k127_61548_23 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000002297 194.0
YYD3_k127_61548_24 GYD domain - - - 0.000000000000000000000000000000000000869 152.0
YYD3_k127_61548_26 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000001069 117.0
YYD3_k127_61548_27 - - - - 0.000000000000000000006961 97.0
YYD3_k127_61548_28 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000002015 94.0
YYD3_k127_61548_29 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 0.0000000000000001481 79.0
YYD3_k127_61548_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005065 611.0
YYD3_k127_61548_30 Resolvase, N terminal domain - - - 0.000000002131 61.0
YYD3_k127_61548_31 - - - - 0.0004815 49.0
YYD3_k127_61548_4 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 513.0
YYD3_k127_61548_5 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 477.0
YYD3_k127_61548_6 Chalcone and stilbene synthases, C-terminal domain K16167 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004963 417.0
YYD3_k127_61548_7 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 410.0
YYD3_k127_61548_8 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 416.0
YYD3_k127_61548_9 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 379.0
YYD3_k127_6165006_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 1.621e-291 905.0
YYD3_k127_6165006_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 584.0
YYD3_k127_6165006_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 307.0
YYD3_k127_6165006_3 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003372 273.0
YYD3_k127_6165006_4 phosphoserine phosphatase K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000002536 177.0
YYD3_k127_6165006_5 COG3209 Rhs family protein - - - 0.000000000000000000565 99.0
YYD3_k127_6175168_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1107.0
YYD3_k127_6175168_1 ABC transporter transmembrane region K12541 - - 3.539e-229 731.0
YYD3_k127_6175168_2 HlyD family secretion protein K02022,K12542 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 404.0
YYD3_k127_6175168_3 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 304.0
YYD3_k127_6175168_4 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000791 249.0
YYD3_k127_6175168_5 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000005614 194.0
YYD3_k127_6175168_6 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000000000000003328 118.0
YYD3_k127_6175168_7 - - - - 0.0000000000000000000000000005303 121.0
YYD3_k127_6175168_8 tryptophan synthase subunit beta - - - 0.0000000000000001575 83.0
YYD3_k127_6175168_9 - - - - 0.0000000000006201 78.0
YYD3_k127_6176854_0 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0 1099.0
YYD3_k127_6176854_1 Belongs to the 5'-nucleotidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 585.0
YYD3_k127_6176854_2 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000562 544.0
YYD3_k127_6176854_3 Cytosine deaminase and related metal-dependent K01485 - 3.5.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000007475 265.0
YYD3_k127_6176854_4 NADPH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003119 237.0
YYD3_k127_6176854_5 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000007006 200.0
YYD3_k127_6181308_0 transport systems, ATPase components K02056 - 3.6.3.17 3.351e-214 685.0
YYD3_k127_6181308_1 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 557.0
YYD3_k127_6181308_2 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 471.0
YYD3_k127_6181308_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 406.0
YYD3_k127_6181308_4 Glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006829 384.0
YYD3_k127_6181308_5 Isochorismatase family K08281 - 3.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 301.0
YYD3_k127_6181308_6 PFAM Methyltransferase type - - - 0.0000000000000000000000000000000000000000000000000000000000000000006249 240.0
YYD3_k127_6181308_7 PFAM YdjC family protein K03478 - 3.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000007266 238.0
YYD3_k127_6181308_8 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000001326 217.0
YYD3_k127_6181308_9 GtrA-like protein - - - 0.000000000000006484 77.0
YYD3_k127_6194475_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 9.456e-285 880.0
YYD3_k127_6194475_1 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 591.0
YYD3_k127_6194475_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 561.0
YYD3_k127_6194475_3 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 510.0
YYD3_k127_6194475_4 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 460.0
YYD3_k127_6194475_5 VWA domain containing CoxE-like protein K07161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009841 464.0
YYD3_k127_6194475_6 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 361.0
YYD3_k127_6194475_7 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004564 271.0
YYD3_k127_6194475_8 XdhC and CoxI family - - - 0.0000000000000000000000000000000000000000000007654 171.0
YYD3_k127_6194475_9 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000001147 132.0
YYD3_k127_6212582_0 glutamine synthetase K01915 - 6.3.1.2 1.006e-212 669.0
YYD3_k127_6212582_1 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 593.0
YYD3_k127_6212582_2 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 484.0
YYD3_k127_6212582_3 Belongs to the P(II) protein family K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.00000000000000000000000000000000000000000000000000000000001998 210.0
YYD3_k127_6212582_4 PFAM CBS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000001926 207.0
YYD3_k127_6212582_6 Protein required for attachment to host cells - - - 0.0000000000000000000002293 103.0
YYD3_k127_6213872_0 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 340.0
YYD3_k127_6213872_1 Protein of unknown function (DUF1194) - - - 0.00000000000000000000000000000000000000000000000000002202 197.0
YYD3_k127_6213872_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000000000000000000000000000000000000009521 151.0
YYD3_k127_6213872_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000008802 143.0
YYD3_k127_6213872_4 - - - - 0.0000000000000000634 82.0
YYD3_k127_6239485_0 transport system permease component K02037 - - 3.478e-304 955.0
YYD3_k127_6239485_1 Phosphate transport system permease K02038 - - 6.813e-236 751.0
YYD3_k127_6239485_10 Membrane transport protein MerF - - - 0.00000000000000003305 87.0
YYD3_k127_6239485_11 Mercury scavenger that specifically binds to one mercury ion and which passes it to the mercuric reductase (MerA) via the MerT protein K08364 - - 0.0000000000006472 77.0
YYD3_k127_6239485_12 Plays a role in the regulation of phosphate uptake K02039 - - 0.00003848 52.0
YYD3_k127_6239485_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00520 - 1.16.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 618.0
YYD3_k127_6239485_3 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006338 492.0
YYD3_k127_6239485_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 426.0
YYD3_k127_6239485_5 signal transduction histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 376.0
YYD3_k127_6239485_6 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 357.0
YYD3_k127_6239485_7 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000006006 226.0
YYD3_k127_6239485_8 MerR, DNA binding K08365 - - 0.00000000000000000000000000000000000000001134 158.0
YYD3_k127_6239485_9 MerT mercuric transport protein K08363 - - 0.0000000000000000000000000000000000001908 145.0
YYD3_k127_6250054_0 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 345.0
YYD3_k127_6250054_1 COG1247 Sortase and related acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000009549 229.0
YYD3_k127_6250054_2 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000002888 174.0
YYD3_k127_6250054_3 - - - - 0.0000000000000000000000000000000000001302 160.0
YYD3_k127_6250054_4 - - - - 0.0000000000000000000000000000008016 139.0
YYD3_k127_6250054_5 - - - - 0.00000000000000000000000000002512 136.0
YYD3_k127_6250054_6 DNA repair - - - 0.00000000000000000000003599 101.0
YYD3_k127_6250054_7 Lysine exporter protein LysE YggA - - - 0.000000618 51.0
YYD3_k127_6259479_0 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 500.0
YYD3_k127_6259479_1 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 327.0
YYD3_k127_6259479_2 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000002063 194.0
YYD3_k127_6259479_3 Precorrin-6x reductase CbiJ/CobK K05895 - 1.3.1.106,1.3.1.54 0.0000000000000000000000000000000000000000000003376 172.0
YYD3_k127_6259479_4 Ankyrin repeat - - - 0.0000000000000000000000001232 113.0
YYD3_k127_6265139_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 7.897e-252 784.0
YYD3_k127_6265139_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 5.615e-229 725.0
YYD3_k127_6265139_2 Belongs to the GST superfamily K11209 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 321.0
YYD3_k127_6265139_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000000000006679 204.0
YYD3_k127_6265139_4 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000009333 195.0
YYD3_k127_6265139_5 - - - - 0.00000000000000000000000000000000000000000000000009377 185.0
YYD3_k127_6265139_6 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000001917 171.0
YYD3_k127_6265139_7 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000004458 113.0
YYD3_k127_6267073_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1180.0
YYD3_k127_6267073_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.493e-224 704.0
YYD3_k127_6267073_10 Aldo/keto reductase family K05882 - 1.1.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 488.0
YYD3_k127_6267073_11 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 475.0
YYD3_k127_6267073_12 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 467.0
YYD3_k127_6267073_13 Amidohydrolase K03392,K22213 - 4.1.1.45,4.1.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 429.0
YYD3_k127_6267073_14 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 421.0
YYD3_k127_6267073_15 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 411.0
YYD3_k127_6267073_16 HemY protein N-terminus K02498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 394.0
YYD3_k127_6267073_17 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 374.0
YYD3_k127_6267073_18 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005241 375.0
YYD3_k127_6267073_19 Adenylate and Guanylate cyclase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 373.0
YYD3_k127_6267073_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 5.031e-204 639.0
YYD3_k127_6267073_20 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007333 357.0
YYD3_k127_6267073_21 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 339.0
YYD3_k127_6267073_22 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 331.0
YYD3_k127_6267073_23 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 318.0
YYD3_k127_6267073_24 glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008967 316.0
YYD3_k127_6267073_25 Sulfatase-modifying factor enzyme 1 K20333 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 316.0
YYD3_k127_6267073_26 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 291.0
YYD3_k127_6267073_27 oxidoreductase activity, acting on CH-OH group of donors - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006408 280.0
YYD3_k127_6267073_28 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001301 279.0
YYD3_k127_6267073_29 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001819 283.0
YYD3_k127_6267073_3 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 3.424e-196 616.0
YYD3_k127_6267073_30 3-hydroxyanthranilic acid dioxygenase K00452 GO:0000334,GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0044237,GO:0044248,GO:0051213,GO:0055114 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000003337 244.0
YYD3_k127_6267073_31 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000002088 244.0
YYD3_k127_6267073_32 Protein of unknown function (DUF1194) - - - 0.000000000000000000000000000000000000000000000000000000000000001965 226.0
YYD3_k127_6267073_33 COG1587 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000005529 239.0
YYD3_k127_6267073_34 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000006324 220.0
YYD3_k127_6267073_35 EAL domain K21024 - 3.1.4.52 0.0000000000000000000000000000000000000000000000000000000297 209.0
YYD3_k127_6267073_36 EVE domain - - - 0.00000000000000000000000000000000000000000000000000002643 192.0
YYD3_k127_6267073_37 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000007869 186.0
YYD3_k127_6267073_38 Flavin reductase like domain K09024 - - 0.0000000000000000000000000000000000000000009382 163.0
YYD3_k127_6267073_39 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000001863 158.0
YYD3_k127_6267073_4 COG0471 Di- and tricarboxylate transporters - - - 9.762e-195 623.0
YYD3_k127_6267073_40 Putative 2OG-Fe(II) oxygenase - - - 0.00000000000000000000000000000000000002335 153.0
YYD3_k127_6267073_41 SnoaL-like domain - - - 0.0000000000000000000000000000000000006005 143.0
YYD3_k127_6267073_42 Winged helix DNA-binding domain - - - 0.000000000000000000000000000005165 128.0
YYD3_k127_6267073_43 COG1734 DnaK suppressor protein K06204 - - 0.000000000000000000000000000007447 123.0
YYD3_k127_6267073_44 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.00000000000000000000000000006405 125.0
YYD3_k127_6267073_45 Aminotransferase class I and II K21784 - - 0.0000000000000000000000000006112 116.0
YYD3_k127_6267073_46 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000001285 117.0
YYD3_k127_6267073_47 small membrane protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000001607 115.0
YYD3_k127_6267073_48 Lipopolysaccharide-assembly K03643 - - 0.00000000000000000000004926 105.0
YYD3_k127_6267073_49 Protein of unknown function (DUF1674) - - - 0.00000000021 63.0
YYD3_k127_6267073_5 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 597.0
YYD3_k127_6267073_50 - - - - 0.0000006857 53.0
YYD3_k127_6267073_6 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004455 548.0
YYD3_k127_6267073_7 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 519.0
YYD3_k127_6267073_8 PAS fold K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000729 531.0
YYD3_k127_6267073_9 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 512.0
YYD3_k127_6271692_0 benzoyl-CoA oxygenase - - - 1.639e-257 799.0
YYD3_k127_6271692_1 Enoyl-CoA hydratase/isomerase - - - 1.034e-242 762.0
YYD3_k127_6271692_10 COG0477 Permeases of the major facilitator superfamily K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 366.0
YYD3_k127_6271692_11 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 357.0
YYD3_k127_6271692_12 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 353.0
YYD3_k127_6271692_13 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 319.0
YYD3_k127_6271692_14 Sugar (and other) transporter K07552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001453 292.0
YYD3_k127_6271692_15 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001537 263.0
YYD3_k127_6271692_16 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000001966 243.0
YYD3_k127_6271692_17 Belongs to the HpcH HpaI aldolase family K00979,K02510 - 2.7.7.38,4.1.2.52 0.00000000000000000000000000000000000000000000000000000007049 213.0
YYD3_k127_6271692_18 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000006801 189.0
YYD3_k127_6271692_19 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000001122 187.0
YYD3_k127_6271692_2 COG0744 Membrane carboxypeptidase (penicillin-binding protein) K05366 - 2.4.1.129,3.4.16.4 3.66e-214 685.0
YYD3_k127_6271692_20 PFAM AMP-dependent synthetase and ligase K04110 - 6.2.1.25 0.000000000000000000000000000000000000000000003877 168.0
YYD3_k127_6271692_21 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000003884 164.0
YYD3_k127_6271692_22 GcrA cell cycle regulator K13583 - - 0.0000000000000000000000000000000000000001278 155.0
YYD3_k127_6271692_23 transcriptional regulator - - - 0.000000000000000000000000000000000000013 149.0
YYD3_k127_6271692_24 - - - - 0.00000000000000000000000000000000000001542 152.0
YYD3_k127_6271692_25 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000001119 115.0
YYD3_k127_6271692_26 transmembrane transcriptional regulator (anti-sigma factor) - - - 0.0000000000000000000000003476 116.0
YYD3_k127_6271692_27 TIGRFAM cytochrome c oxidase accessory protein - - - 0.00000000002068 67.0
YYD3_k127_6271692_28 - - - - 0.00005685 54.0
YYD3_k127_6271692_3 Tripartite tricarboxylate transporter TctA family - - - 8.312e-204 653.0
YYD3_k127_6271692_4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 8.736e-196 627.0
YYD3_k127_6271692_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 505.0
YYD3_k127_6271692_6 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 500.0
YYD3_k127_6271692_7 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005199 501.0
YYD3_k127_6271692_8 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 479.0
YYD3_k127_6271692_9 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 399.0
YYD3_k127_6313566_0 Radical SAM superfamily K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 567.0
YYD3_k127_6313566_1 Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations K01241 - 3.2.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 561.0
YYD3_k127_6313566_10 Alpha beta hydrolase K01055 - 3.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000004319 268.0
YYD3_k127_6313566_11 PFAM binding-protein-dependent transport systems inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000006051 236.0
YYD3_k127_6313566_12 PFAM binding-protein-dependent transport systems inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000003832 216.0
YYD3_k127_6313566_13 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.0000000000000000000000000000000000000000000000051 190.0
YYD3_k127_6313566_14 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.0000000000000000001354 95.0
YYD3_k127_6313566_2 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004563 535.0
YYD3_k127_6313566_3 Glutathione S-Transferase K07393 - 1.8.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000089 453.0
YYD3_k127_6313566_4 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 445.0
YYD3_k127_6313566_5 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 361.0
YYD3_k127_6313566_6 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 346.0
YYD3_k127_6313566_7 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 312.0
YYD3_k127_6313566_8 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007863 313.0
YYD3_k127_6313566_9 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 286.0
YYD3_k127_6320141_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1060.0
YYD3_k127_6320141_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 1.205e-267 831.0
YYD3_k127_6320141_10 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 341.0
YYD3_k127_6320141_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 328.0
YYD3_k127_6320141_12 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 314.0
YYD3_k127_6320141_13 of the double-stranded beta helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001308 273.0
YYD3_k127_6320141_14 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001617 280.0
YYD3_k127_6320141_15 Dioxygenase K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000004851 237.0
YYD3_k127_6320141_16 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000003258 229.0
YYD3_k127_6320141_17 Protein of unknown function, DUF599 - - - 0.0000000000000000000000000000000000000000000000000000000002944 212.0
YYD3_k127_6320141_18 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.0000000000000000000000000000000000000000000000000005591 189.0
YYD3_k127_6320141_19 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000000000003917 186.0
YYD3_k127_6320141_2 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 7.498e-225 706.0
YYD3_k127_6320141_20 Haem-degrading - - - 0.000000000000000000000000000000000000000002692 160.0
YYD3_k127_6320141_21 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000000000008629 149.0
YYD3_k127_6320141_22 Belongs to the BolA IbaG family - - - 0.000000000000000000000000000000002249 131.0
YYD3_k127_6320141_23 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000001452 131.0
YYD3_k127_6320141_24 PAS domain - - - 0.000000000000002293 81.0
YYD3_k127_6320141_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 1.295e-218 691.0
YYD3_k127_6320141_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 610.0
YYD3_k127_6320141_5 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 587.0
YYD3_k127_6320141_6 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 570.0
YYD3_k127_6320141_7 Cys/Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 470.0
YYD3_k127_6320141_8 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006534 457.0
YYD3_k127_6320141_9 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007995 345.0
YYD3_k127_6333934_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1073.0
YYD3_k127_6333934_1 COG0480 Translation elongation factors (GTPases) K02355 - - 3.932e-274 859.0
YYD3_k127_6333934_10 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 374.0
YYD3_k127_6333934_11 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 320.0
YYD3_k127_6333934_12 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 324.0
YYD3_k127_6333934_13 Ketopantoate reductase PanE/ApbA C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 315.0
YYD3_k127_6333934_14 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 306.0
YYD3_k127_6333934_15 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 290.0
YYD3_k127_6333934_16 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000474 264.0
YYD3_k127_6333934_17 COG0314 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000000001591 235.0
YYD3_k127_6333934_18 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.0000000000000000000000000000000000000000000000000000000000000000008468 233.0
YYD3_k127_6333934_19 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000000000001138 232.0
YYD3_k127_6333934_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 6.911e-272 852.0
YYD3_k127_6333934_20 transcriptional - - - 0.0000000000000000000000000000000000000000000000000000000000005218 214.0
YYD3_k127_6333934_21 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000000008308 193.0
YYD3_k127_6333934_22 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.00000000000000000000000000000000000000000000000002264 189.0
YYD3_k127_6333934_23 Putative tRNA binding domain K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000006855 181.0
YYD3_k127_6333934_24 Sortase family K07284 - 3.4.22.70 0.00000000000000000000000000000000000000000006885 179.0
YYD3_k127_6333934_25 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000001181 155.0
YYD3_k127_6333934_26 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000004 147.0
YYD3_k127_6333934_27 High-affinity nickel-transport protein K08970 - - 0.0000000000000000000000000000000000001542 156.0
YYD3_k127_6333934_28 Cytochrome P460 - - - 0.000000000000000000000000000000000005943 143.0
YYD3_k127_6333934_29 Domain of unknown function (DUF305) - - - 0.0000000000000000000000000000002755 130.0
YYD3_k127_6333934_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.537e-210 662.0
YYD3_k127_6333934_30 transport system, periplasmic component - - - 0.000000000000000000000000000003997 127.0
YYD3_k127_6333934_31 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.000000000000000000000000006478 119.0
YYD3_k127_6333934_32 Stf0 sulphotransferase - - - 0.00000000000000000000000001392 122.0
YYD3_k127_6333934_33 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000004265 112.0
YYD3_k127_6333934_34 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.0000000000006144 69.0
YYD3_k127_6333934_4 Aminotransferase K00812 - 2.6.1.1 2.77e-210 662.0
YYD3_k127_6333934_5 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 592.0
YYD3_k127_6333934_6 COG0303 Molybdopterin biosynthesis enzyme K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 536.0
YYD3_k127_6333934_7 Histidine kinase K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 488.0
YYD3_k127_6333934_8 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 454.0
YYD3_k127_6333934_9 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 414.0
YYD3_k127_6340480_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1351.0
YYD3_k127_6340480_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 2.169e-295 921.0
YYD3_k127_6340480_10 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 539.0
YYD3_k127_6340480_11 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 536.0
YYD3_k127_6340480_12 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 533.0
YYD3_k127_6340480_13 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 496.0
YYD3_k127_6340480_14 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 505.0
YYD3_k127_6340480_15 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 479.0
YYD3_k127_6340480_16 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005467 463.0
YYD3_k127_6340480_17 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 443.0
YYD3_k127_6340480_18 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007557 445.0
YYD3_k127_6340480_19 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005796 430.0
YYD3_k127_6340480_2 COG0513 Superfamily II DNA and RNA helicases K17675 - 3.6.4.13 5.38e-278 893.0
YYD3_k127_6340480_20 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 421.0
YYD3_k127_6340480_21 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 413.0
YYD3_k127_6340480_22 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 404.0
YYD3_k127_6340480_23 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006619 389.0
YYD3_k127_6340480_24 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 - 1.13.11.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 384.0
YYD3_k127_6340480_25 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 358.0
YYD3_k127_6340480_26 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 351.0
YYD3_k127_6340480_27 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 308.0
YYD3_k127_6340480_28 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619 298.0
YYD3_k127_6340480_29 Sugar (and other) transporter K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 306.0
YYD3_k127_6340480_3 COG1138 Cytochrome c biogenesis factor K02198 - - 1.265e-275 866.0
YYD3_k127_6340480_30 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002805 286.0
YYD3_k127_6340480_31 membrane protein terc - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004811 273.0
YYD3_k127_6340480_32 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004467 268.0
YYD3_k127_6340480_33 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001355 263.0
YYD3_k127_6340480_34 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001521 261.0
YYD3_k127_6340480_35 COG4235 Cytochrome c biogenesis factor K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000001182 253.0
YYD3_k127_6340480_36 transcriptional regulator K07736 - - 0.000000000000000000000000000000000000000000000000000000000000000004418 230.0
YYD3_k127_6340480_37 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000004257 219.0
YYD3_k127_6340480_38 Protein of unknown function (DUF1223) - - - 0.0000000000000000000000000000000000000000000000000000000000006007 220.0
YYD3_k127_6340480_39 Redoxin K02199 - - 0.00000000000000000000000000000000000000000000000000000000000811 211.0
YYD3_k127_6340480_4 Adenylate cyclase K01768 - 4.6.1.1 4.671e-262 818.0
YYD3_k127_6340480_40 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000000000008402 206.0
YYD3_k127_6340480_41 Staphylococcal nuclease homologue - - - 0.0000000000000000000000000000000000000000000000000002361 202.0
YYD3_k127_6340480_42 COG2010 Cytochrome c, mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000000000129 187.0
YYD3_k127_6340480_43 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000005916 184.0
YYD3_k127_6340480_44 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000000000003339 168.0
YYD3_k127_6340480_45 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.000000000000000000000000000000000000000003447 170.0
YYD3_k127_6340480_46 Universal stress protein family - - - 0.00000000000000000000000000000000000008195 146.0
YYD3_k127_6340480_47 Lipid A 3-O-deacylase (PagL) - - - 0.00000000000000000000000000000000004931 141.0
YYD3_k127_6340480_48 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000002165 124.0
YYD3_k127_6340480_49 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.0000000000000000000000000001039 122.0
YYD3_k127_6340480_5 Molecular chaperone. Has ATPase activity K04079 - - 2.339e-243 785.0
YYD3_k127_6340480_50 protein conserved in bacteria - - - 0.0000000000000000000000000001437 117.0
YYD3_k127_6340480_51 oxidation-reduction process - - - 0.000000000000000006384 89.0
YYD3_k127_6340480_52 Domain of unknown function (DUF4926) - - - 0.000000000007962 67.0
YYD3_k127_6340480_53 Helix-turn-helix domain - - - 0.0000000002598 65.0
YYD3_k127_6340480_6 Protein conserved in bacteria K07793 - - 3.058e-239 748.0
YYD3_k127_6340480_7 Periplasmic binding protein K01999 - - 5.854e-202 636.0
YYD3_k127_6340480_8 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000747 599.0
YYD3_k127_6340480_9 Protein of unknown function (DUF2652) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 573.0
YYD3_k127_6355546_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 3.405e-225 702.0
YYD3_k127_6355546_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.567e-203 644.0
YYD3_k127_6355546_10 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 336.0
YYD3_k127_6355546_11 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 334.0
YYD3_k127_6355546_12 TRAP-type C4-dicarboxylate transport system periplasmic component K11688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 323.0
YYD3_k127_6355546_13 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 312.0
YYD3_k127_6355546_14 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 305.0
YYD3_k127_6355546_15 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000000000000000000299 231.0
YYD3_k127_6355546_16 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000000007583 213.0
YYD3_k127_6355546_17 membrane - - - 0.0000000000000000000000000000000000000000000000000001167 198.0
YYD3_k127_6355546_18 NADPH-quinone reductase (modulator of drug activity B) - - - 0.000000000000000000000000000000000000000000000001119 179.0
YYD3_k127_6355546_19 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000002177 165.0
YYD3_k127_6355546_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 5.671e-201 636.0
YYD3_k127_6355546_20 membrane protein, required for colicin V production K03558 - - 0.00000000000000000000000000000000000000001691 164.0
YYD3_k127_6355546_21 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000000000000000004983 140.0
YYD3_k127_6355546_22 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000004118 134.0
YYD3_k127_6355546_23 Flavodoxin-like fold - - - 0.0000000000002137 75.0
YYD3_k127_6355546_24 Protein of unknown function (DUF2937) - - - 0.0000000000006346 80.0
YYD3_k127_6355546_3 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 1.227e-197 630.0
YYD3_k127_6355546_4 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006667 513.0
YYD3_k127_6355546_5 malonyl CoA-acyl carrier protein transacylase K00645,K15327 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 410.0
YYD3_k127_6355546_6 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 404.0
YYD3_k127_6355546_7 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 402.0
YYD3_k127_6355546_8 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 393.0
YYD3_k127_6355546_9 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 384.0
YYD3_k127_6366503_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 474.0
YYD3_k127_6366503_1 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 372.0
YYD3_k127_6366503_2 PFAM D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K16843 - 1.1.1.310 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 340.0
YYD3_k127_6366503_3 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000001163 184.0
YYD3_k127_6366503_4 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000006985 139.0
YYD3_k127_6374866_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1052.0
YYD3_k127_6374866_1 Participates in both transcription termination and antitermination K02600 - - 3.786e-242 756.0
YYD3_k127_6374866_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 5.825e-200 629.0
YYD3_k127_6374866_3 Cytochrome BD ubiquinol oxidase subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003638 339.0
YYD3_k127_6374866_4 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000002027 241.0
YYD3_k127_6374866_5 aerobic electron transport chain K00425 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016679,GO:0016682,GO:0019646,GO:0020037,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0070069,GO:0071944,GO:0097159,GO:1901363 1.10.3.14 0.000000000000000000000000000000000000000000000003986 179.0
YYD3_k127_6374866_6 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000001578 174.0
YYD3_k127_6374866_7 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.000000000000000000000000000000000000009719 157.0
YYD3_k127_6374866_8 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000003969 93.0
YYD3_k127_6379138_0 AMP-binding enzyme C-terminal domain K00666 - - 3.514e-228 713.0
YYD3_k127_6379138_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 491.0
YYD3_k127_6379138_2 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000004688 184.0
YYD3_k127_6379138_3 Protein of unknown function (DUF2390) - - - 0.000000000000000000001777 101.0
YYD3_k127_6379138_4 Protein of unknown function (DUF465) - - - 0.00000001519 59.0
YYD3_k127_6395584_0 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 615.0
YYD3_k127_6395584_1 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 542.0
YYD3_k127_6395584_11 - - - - 0.000000000000000000000000000000001707 140.0
YYD3_k127_6395584_12 ABC-type transport auxiliary lipoprotein component K09857 - - 0.000000000000000000000000008225 117.0
YYD3_k127_6395584_13 17 kDa outer membrane surface antigen - - - 0.000003411 54.0
YYD3_k127_6395584_2 Paraquat-inducible protein B K06192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 526.0
YYD3_k127_6395584_3 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 511.0
YYD3_k127_6395584_4 Paraquat-inducible protein A K03808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 496.0
YYD3_k127_6395584_5 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005676 312.0
YYD3_k127_6395584_6 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 296.0
YYD3_k127_6395584_7 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000001621 209.0
YYD3_k127_6395584_8 Protein of unknown function (DUF2950) - - - 0.00000000000000000000000000000000000000000000000000000493 197.0
YYD3_k127_6395584_9 UPF0056 inner membrane protein K05595 - - 0.0000000000000000000000000000000000000000000000000001874 192.0
YYD3_k127_6474240_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1145.0
YYD3_k127_6474240_1 COG1131 ABC-type multidrug transport system, ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 433.0
YYD3_k127_6474240_2 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000006163 122.0
YYD3_k127_6474240_3 Zinc-finger domain - - - 0.0000000000000000005672 90.0
YYD3_k127_6560245_0 This protein is involved in the repair of mismatches in DNA K03555 - - 0.0 1120.0
YYD3_k127_6560245_1 malic enzyme K00029 - 1.1.1.40 2.793e-262 819.0
YYD3_k127_6560245_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000001939 246.0
YYD3_k127_6560245_3 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000003869 123.0
YYD3_k127_659687_0 Amidohydrolase family K05603 - 3.5.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 566.0
YYD3_k127_659687_1 glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 518.0
YYD3_k127_659687_10 Uncharacterized lipoprotein - - - 0.0000000000000000000000000000000000000258 151.0
YYD3_k127_659687_11 Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain K08738 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045155,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070013,GO:0070469,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 - 0.0000000000000000000000000000003277 128.0
YYD3_k127_659687_12 Putative prokaryotic signal transducing protein - - - 0.00000000000000002572 85.0
YYD3_k127_659687_13 Cytochrome C556 - - - 0.0000000000203 72.0
YYD3_k127_659687_14 - - - - 0.0000000001011 66.0
YYD3_k127_659687_15 Urocanase C-terminal domain K01712 - 4.2.1.49 0.00006381 46.0
YYD3_k127_659687_2 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 538.0
YYD3_k127_659687_3 imidazolonepropionase activity K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 496.0
YYD3_k127_659687_4 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 483.0
YYD3_k127_659687_5 Peptidase family S49 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 317.0
YYD3_k127_659687_6 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 303.0
YYD3_k127_659687_7 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000003198 244.0
YYD3_k127_659687_8 Methyltransferase small domain - - - 0.00000000000000000000000000000000000000000000000000000000000002345 223.0
YYD3_k127_659687_9 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000001991 199.0
YYD3_k127_6632497_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006898 375.0
YYD3_k127_6632497_1 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003331 304.0
YYD3_k127_6632497_2 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 285.0
YYD3_k127_6632497_3 17 kDa outer membrane surface antigen - - - 0.000000000000000000000000000005115 123.0
YYD3_k127_664492_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 3.286e-303 945.0
YYD3_k127_664492_1 ABC-type multidrug transport system, ATPase and permease K06147 - - 6.666e-225 715.0
YYD3_k127_664492_10 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 328.0
YYD3_k127_664492_11 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001953 285.0
YYD3_k127_664492_12 AMP-binding enzyme C-terminal domain K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002656 271.0
YYD3_k127_664492_13 Transcriptional regulatory protein, C terminal K14981 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003291 259.0
YYD3_k127_664492_14 protein conserved in bacteria K09987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009857 265.0
YYD3_k127_664492_15 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000682 244.0
YYD3_k127_664492_16 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000000000000000000005491 218.0
YYD3_k127_664492_17 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.0000000000000000000000000000000000000000000000000000000006163 205.0
YYD3_k127_664492_18 surface antigen - - - 0.000000000000000000000000000000000000000000008112 171.0
YYD3_k127_664492_19 Binds the 23S rRNA K02909 - - 0.00000000000000000000000000000000008347 136.0
YYD3_k127_664492_2 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 6.677e-220 689.0
YYD3_k127_664492_20 Belongs to the frataxin family K19054 - 1.16.3.1 0.00000000000000000000000007909 110.0
YYD3_k127_664492_21 COG2885 outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.0000000000000000007517 99.0
YYD3_k127_664492_22 - - - - 0.0000000000000001426 81.0
YYD3_k127_664492_23 Protein of unknown function (DUF1192) - - - 0.000000000008718 71.0
YYD3_k127_664492_24 - - - - 0.000007858 57.0
YYD3_k127_664492_3 Histidine kinase-like ATPases K14980 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 477.0
YYD3_k127_664492_4 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 452.0
YYD3_k127_664492_5 MotA TolQ ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 445.0
YYD3_k127_664492_6 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 373.0
YYD3_k127_664492_7 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 372.0
YYD3_k127_664492_8 flagellar motor protein K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 371.0
YYD3_k127_664492_9 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 356.0
YYD3_k127_6657740_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000003436 260.0
YYD3_k127_6657740_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009869 243.0
YYD3_k127_6657740_2 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
YYD3_k127_6657740_3 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000000000000000000002126 216.0
YYD3_k127_6657740_4 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.0000000000000000000000000000000000000000000000000000000002899 209.0
YYD3_k127_6657740_5 Phage integrase family - - - 0.000000000000000000000000000000000000003567 153.0
YYD3_k127_6657740_6 Protein of unknown function (FYDLN_acid) - - - 0.000000000000000000000006972 104.0
YYD3_k127_6657740_7 - K01419 - 3.4.25.2 0.000000001218 67.0
YYD3_k127_6657740_8 Protein of unknown function (DUF1150) - - - 0.00000002535 62.0
YYD3_k127_6657740_9 Phage integrase family - - - 0.000786 45.0
YYD3_k127_6689457_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 2.078e-259 812.0
YYD3_k127_6689457_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 3.868e-197 623.0
YYD3_k127_6689457_10 Iron-binding zinc finger CDGSH type - - - 0.00000000000000000000000000000007745 126.0
YYD3_k127_6689457_11 - - - - 0.00000000000000000000000001029 119.0
YYD3_k127_6689457_12 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000008987 105.0
YYD3_k127_6689457_13 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000004673 107.0
YYD3_k127_6689457_14 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000001478 73.0
YYD3_k127_6689457_2 Glycine cleavage system T protein K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008891 505.0
YYD3_k127_6689457_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 467.0
YYD3_k127_6689457_4 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 317.0
YYD3_k127_6689457_5 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003925 280.0
YYD3_k127_6689457_6 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000002539 179.0
YYD3_k127_6689457_7 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000003311 159.0
YYD3_k127_6689457_8 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000312 154.0
YYD3_k127_6689457_9 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000001445 135.0
YYD3_k127_668971_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 2.058e-284 891.0
YYD3_k127_668971_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 6.282e-275 851.0
YYD3_k127_668971_10 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 405.0
YYD3_k127_668971_11 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 366.0
YYD3_k127_668971_12 Phage integrase, N-terminal SAM-like domain K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 373.0
YYD3_k127_668971_13 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 341.0
YYD3_k127_668971_14 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000000000005956 238.0
YYD3_k127_668971_15 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000000000000009948 224.0
YYD3_k127_668971_16 COG4942 Membrane-bound metallopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000008268 243.0
YYD3_k127_668971_17 protein conserved in bacteria K09798 - - 0.00000000000000000000000000000000000000000000000000000000000009539 228.0
YYD3_k127_668971_18 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000009773 206.0
YYD3_k127_668971_19 protein conserved in bacteria K09921 - - 0.00000000000000000000000000000000000000000000000000000003206 222.0
YYD3_k127_668971_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 6.043e-273 843.0
YYD3_k127_668971_20 Exopolysaccharide synthesis, ExoD - - - 0.000000000000000000000000000000000000000000001512 172.0
YYD3_k127_668971_21 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000003619 159.0
YYD3_k127_668971_22 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000008231 152.0
YYD3_k127_668971_23 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000006402 153.0
YYD3_k127_668971_3 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 9.458e-209 659.0
YYD3_k127_668971_4 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.309e-207 657.0
YYD3_k127_668971_5 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 594.0
YYD3_k127_668971_6 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 583.0
YYD3_k127_668971_7 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 541.0
YYD3_k127_668971_8 Alpha beta hydrolase K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005142 494.0
YYD3_k127_668971_9 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 460.0
YYD3_k127_6721169_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 3.139e-289 908.0
YYD3_k127_6721169_1 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 9.325e-250 784.0
YYD3_k127_6721169_10 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 363.0
YYD3_k127_6721169_11 Iron-containing alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002071 322.0
YYD3_k127_6721169_12 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006993 313.0
YYD3_k127_6721169_13 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000592 270.0
YYD3_k127_6721169_14 SOS response associated peptidase (SRAP) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001123 245.0
YYD3_k127_6721169_15 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.000000000000000000000000000000000000000000000000000004714 196.0
YYD3_k127_6721169_16 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000005451 111.0
YYD3_k127_6721169_17 - - - - 0.0000000000000007035 78.0
YYD3_k127_6721169_18 Creatinase/Prolidase N-terminal domain - - - 0.0000000194 59.0
YYD3_k127_6721169_19 Domain of unknown function (DUF4169) - - - 0.000000114 55.0
YYD3_k127_6721169_2 COG1960 Acyl-CoA dehydrogenases K20035 - - 1.253e-240 759.0
YYD3_k127_6721169_20 Opacity family porin protein - - - 0.000003606 58.0
YYD3_k127_6721169_3 Belongs to the aldehyde dehydrogenase family - - - 1.118e-198 631.0
YYD3_k127_6721169_4 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 599.0
YYD3_k127_6721169_5 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 504.0
YYD3_k127_6721169_6 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 479.0
YYD3_k127_6721169_7 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 398.0
YYD3_k127_6721169_8 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 387.0
YYD3_k127_6721169_9 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005875 366.0
YYD3_k127_679760_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 6.662e-277 866.0
YYD3_k127_679760_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 479.0
YYD3_k127_679760_10 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000005568 158.0
YYD3_k127_679760_11 domain, Protein - - - 0.0000000000000000000000000002045 119.0
YYD3_k127_679760_2 AAA domain K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 481.0
YYD3_k127_679760_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 336.0
YYD3_k127_679760_4 signal transduction protein containing sensor and EAL domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 307.0
YYD3_k127_679760_5 OsmC-like protein K06889,K07397 - - 0.0000000000000000000000000000000000000000000000000000000000593 208.0
YYD3_k127_679760_6 Ferredoxin, 2Fe-2S - - - 0.00000000000000000000000000000000000000000000000000007934 190.0
YYD3_k127_679760_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000000000003763 191.0
YYD3_k127_679760_8 Cupin domain - - - 0.0000000000000000000000000000000000000000000000003011 190.0
YYD3_k127_679760_9 PFAM YbaK prolyl-tRNA K19055 - - 0.00000000000000000000000000000000000000002724 166.0
YYD3_k127_6845738_0 Type II/IV secretion system protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005365 563.0
YYD3_k127_6845738_1 Type II secretion system (T2SS), protein F - - - 0.000000000000000000000000000000000000000000000000000000000001776 221.0
YYD3_k127_6845738_10 PFAM Flp Fap pilin component K02651 - - 0.00000003385 57.0
YYD3_k127_6845738_2 Type II secretion system (T2SS), protein F K12511 - - 0.0000000000000000000000000000000000000000000000000000000000514 217.0
YYD3_k127_6845738_3 Pilus assembly protein - - - 0.0000000000000000000000000000000000000000000000000003302 200.0
YYD3_k127_6845738_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000006168 195.0
YYD3_k127_6845738_5 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000000000000000000000000000001212 181.0
YYD3_k127_6845738_6 peptidase K02278 - 3.4.23.43 0.0000000000000000000007719 102.0
YYD3_k127_6845738_7 PFAM TadE family protein - - - 0.0000000000000000001567 102.0
YYD3_k127_6845738_8 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000003552 79.0
YYD3_k127_6845738_9 TadE-like protein - - - 0.00000002158 64.0
YYD3_k127_6846365_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates - - - 0.0 1018.0
YYD3_k127_6846365_1 AMP-binding enzyme K12508 - 6.2.1.34 6.057e-245 770.0
YYD3_k127_6846365_10 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000006938 142.0
YYD3_k127_6846365_11 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000005955 136.0
YYD3_k127_6846365_12 pfkB family carbohydrate kinase K00852,K18478 - 2.7.1.15,2.7.1.184 0.000000000000000000000000000001627 126.0
YYD3_k127_6846365_13 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000005593 100.0
YYD3_k127_6846365_14 Belongs to the carbohydrate kinase PfkB family K18478 - 2.7.1.184 0.00000000000000000006294 94.0
YYD3_k127_6846365_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 543.0
YYD3_k127_6846365_3 SbmA/BacA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 487.0
YYD3_k127_6846365_4 Pyruvate ferredoxin/flavodoxin oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 466.0
YYD3_k127_6846365_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 400.0
YYD3_k127_6846365_6 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 332.0
YYD3_k127_6846365_7 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 330.0
YYD3_k127_6846365_8 PFAM flavin reductase domain protein, FMN-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 308.0
YYD3_k127_6846365_9 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000721 271.0
YYD3_k127_684869_0 Class II Aldolase and Adducin N-terminal domain - - - 1.713e-293 915.0
YYD3_k127_684869_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 524.0
YYD3_k127_684869_2 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 448.0
YYD3_k127_684869_3 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004357 302.0
YYD3_k127_684869_4 Predicted membrane protein (DUF2339) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 310.0
YYD3_k127_684869_5 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001298 280.0
YYD3_k127_684869_6 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001365 273.0
YYD3_k127_684869_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000001711 188.0
YYD3_k127_6868895_0 transposase IS116 IS110 IS902 family protein K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000199 368.0
YYD3_k127_6868895_1 Protein of unknown function (DUF3445) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009594 249.0
YYD3_k127_6868895_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000198 237.0
YYD3_k127_6868895_3 PFAM Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000006148 103.0
YYD3_k127_715275_0 COG1520 FOG WD40-like repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 431.0
YYD3_k127_715275_1 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001467 256.0
YYD3_k127_715275_2 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000000000000000001494 175.0
YYD3_k127_715275_3 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K03977 - - 0.00000000000000000000000000000000000000000138 158.0
YYD3_k127_715275_4 Protein of unknown function (DUF2794) - - - 0.0000000000000000000002593 102.0
YYD3_k127_715275_5 - - - - 0.00000000000000000004769 92.0
YYD3_k127_734601_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 2.498e-200 642.0
YYD3_k127_734601_1 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 342.0
YYD3_k127_734601_2 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 346.0
YYD3_k127_734601_3 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 295.0
YYD3_k127_734601_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000001859 244.0
YYD3_k127_734601_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000007775 184.0
YYD3_k127_734601_6 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000000003478 151.0
YYD3_k127_734601_7 Belongs to the peptidase S8 family K01361 - 3.4.21.96 0.0000000000000000000000000003156 121.0
YYD3_k127_734601_8 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000002564 69.0
YYD3_k127_734601_9 Anti-sigma-K factor rskA - - - 0.00000000009225 67.0
YYD3_k127_740512_0 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 386.0
YYD3_k127_740512_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 347.0
YYD3_k127_740512_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000005747 232.0
YYD3_k127_740512_3 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K20444 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000005837 180.0
YYD3_k127_740512_4 Glycosyltransferase family 87 - - - 0.00000000000000000000000000000000006518 149.0
YYD3_k127_740512_5 - - - - 0.0000000000000000000000000298 123.0
YYD3_k127_740512_6 lysyltransferase activity K07027 - - 0.00000000000000006876 92.0
YYD3_k127_740512_7 PFAM Flp Fap pilin component K02651 - - 0.000000003931 61.0
YYD3_k127_740512_8 Flp Fap pilin component K02651 - - 0.00000001803 58.0
YYD3_k127_781169_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 4.763e-242 758.0
YYD3_k127_781169_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 5.999e-213 668.0
YYD3_k127_781169_10 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 344.0
YYD3_k127_781169_11 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 334.0
YYD3_k127_781169_12 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 332.0
YYD3_k127_781169_13 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 318.0
YYD3_k127_781169_14 PFAM helix-turn-helix- domain containing protein AraC type K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 308.0
YYD3_k127_781169_15 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 300.0
YYD3_k127_781169_16 PFAM Bacterial protein of - - - 0.000000000000000000000000000000000000000000000000000000000008219 217.0
YYD3_k127_781169_17 Transcriptional regulator K07734 - - 0.0000000000000000000000000000000000000000000000000000000001521 210.0
YYD3_k127_781169_18 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001285 166.0
YYD3_k127_781169_19 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000004431 160.0
YYD3_k127_781169_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 599.0
YYD3_k127_781169_20 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000006102 155.0
YYD3_k127_781169_21 Protein of unknown function (DUF2948) - - - 0.0000000000000000000000000000000000109 147.0
YYD3_k127_781169_22 - - - - 0.0000000000000000000000003461 113.0
YYD3_k127_781169_23 cytochrome K08738 - - 0.00000000000000000002127 98.0
YYD3_k127_781169_24 conserved small protein - - - 0.00000695 52.0
YYD3_k127_781169_3 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006327 592.0
YYD3_k127_781169_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006803 558.0
YYD3_k127_781169_5 Isocitrate/isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 524.0
YYD3_k127_781169_6 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008454 439.0
YYD3_k127_781169_7 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 427.0
YYD3_k127_781169_8 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009461 419.0
YYD3_k127_781169_9 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009082 388.0
YYD3_k127_785850_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 2.207e-200 636.0
YYD3_k127_785850_1 carbohydrate transport K02027,K05813 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 610.0
YYD3_k127_785850_10 COG2041 Sulfite oxidase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 350.0
YYD3_k127_785850_11 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 357.0
YYD3_k127_785850_12 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006028 346.0
YYD3_k127_785850_13 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008155 348.0
YYD3_k127_785850_14 Periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 328.0
YYD3_k127_785850_15 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000003119 237.0
YYD3_k127_785850_16 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000001295 202.0
YYD3_k127_785850_17 Domain of unknown function (DUF427) - - - 0.00000000000000000000000000000000000003196 153.0
YYD3_k127_785850_18 transcriptional regulator - - - 0.00000000000000000000000000007125 121.0
YYD3_k127_785850_2 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 480.0
YYD3_k127_785850_3 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003535 460.0
YYD3_k127_785850_4 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 477.0
YYD3_k127_785850_5 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 458.0
YYD3_k127_785850_6 Binding-protein-dependent transport system inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 422.0
YYD3_k127_785850_7 Selenocysteine lyase K04127 - 5.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 405.0
YYD3_k127_785850_8 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 369.0
YYD3_k127_785850_9 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 352.0
YYD3_k127_803830_0 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 470.0
YYD3_k127_803830_1 Binding-protein-dependent transport system inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 454.0
YYD3_k127_803830_10 - - - - 0.0000000000000000000000000001726 117.0
YYD3_k127_803830_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 444.0
YYD3_k127_803830_3 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 422.0
YYD3_k127_803830_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 369.0
YYD3_k127_803830_5 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 345.0
YYD3_k127_803830_6 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000000008181 199.0
YYD3_k127_803830_7 - - - - 0.000000000000000000000000000000000000000000000001029 180.0
YYD3_k127_803830_8 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000002136 178.0
YYD3_k127_803830_9 Putative AphA-like transcriptional regulator - - - 0.00000000000000000000000000000000000000001497 159.0
YYD3_k127_830785_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 2.549e-203 639.0
YYD3_k127_830785_1 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 537.0
YYD3_k127_830785_2 COG2309 Leucyl aminopeptidase (aminopeptidase T) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 518.0
YYD3_k127_830785_3 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 468.0
YYD3_k127_830785_4 Belongs to the TPP enzyme family K03336 - 3.7.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 441.0
YYD3_k127_830785_5 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 336.0
YYD3_k127_830785_6 Transcriptional regulator - - - 0.0000000000000000000000000000000004064 136.0
YYD3_k127_830785_7 PFAM GtrA family protein - - - 0.000000000005066 70.0
YYD3_k127_835689_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 1.227e-311 971.0
YYD3_k127_835689_1 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 546.0
YYD3_k127_835689_10 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000001326 271.0
YYD3_k127_835689_11 Putative transmembrane protein (Alph_Pro_TM) - - - 0.0000000000000000000000000000000000000000000000000000000000000000003315 258.0
YYD3_k127_835689_12 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000001075 215.0
YYD3_k127_835689_13 ROS/MUCR transcriptional regulator protein - - - 0.0000000000000000000000000000000000000000000000000000001091 197.0
YYD3_k127_835689_14 FlgJ-related protein K03796 - - 0.0000000000000000000000000000000000000000000000000007703 197.0
YYD3_k127_835689_15 universal stress protein UspA and related nucleotide-binding - - - 0.0000000000000000000000000000000000000000000000000007716 189.0
YYD3_k127_835689_16 ATP-dependent Clp protease proteolytic subunit - - - 0.0000000000000000000000000000000000000000000005399 175.0
YYD3_k127_835689_17 Cyclic nucleotide-binding domain K21563 - - 0.0000000000000000000000000000000000000000221 162.0
YYD3_k127_835689_18 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.0000000000000000000000000000000000000001014 159.0
YYD3_k127_835689_19 ATP-independent chaperone mediated protein folding - - - 0.000000000000000000000000000000000004519 143.0
YYD3_k127_835689_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002918 548.0
YYD3_k127_835689_20 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000002451 117.0
YYD3_k127_835689_21 Ankyrin repeat - - - 0.0000000000000000000001551 108.0
YYD3_k127_835689_3 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008178 409.0
YYD3_k127_835689_4 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 395.0
YYD3_k127_835689_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004757 389.0
YYD3_k127_835689_6 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 344.0
YYD3_k127_835689_7 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009236 343.0
YYD3_k127_835689_8 COG0694 Thioredoxin-like proteins and domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 284.0
YYD3_k127_835689_9 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004286 276.0
YYD3_k127_845009_0 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 431.0
YYD3_k127_845009_1 Glycosyl transferases group 1 K00786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 409.0
YYD3_k127_845009_2 Domain of unknown function (DUF3473) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 363.0
YYD3_k127_845009_3 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 335.0
YYD3_k127_845009_4 CobQ/CobB/MinD/ParA nucleotide binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003183 267.0
YYD3_k127_845009_5 Protein involved in cellulose biosynthesis - - - 0.000000000000000000000000000000000000000000000000000002098 208.0
YYD3_k127_845009_6 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000583 154.0
YYD3_k127_845009_7 Type II secretory pathway, component ExeA - - - 0.000000000000000000000000000002414 141.0
YYD3_k127_846344_0 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 574.0
YYD3_k127_846344_1 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 465.0
YYD3_k127_846344_2 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003561 280.0
YYD3_k127_846344_3 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000009038 224.0
YYD3_k127_846344_5 Lysophospholipase - - - 0.0000000118 59.0
YYD3_k127_8576_0 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 581.0
YYD3_k127_8576_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 578.0
YYD3_k127_8576_10 Preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000000006395 143.0
YYD3_k127_8576_2 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 444.0
YYD3_k127_8576_3 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 392.0
YYD3_k127_8576_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
YYD3_k127_8576_5 Phytoene squalene synthetase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000005862 255.0
YYD3_k127_8576_6 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007618 252.0
YYD3_k127_8576_7 Squalene/phytoene synthase K21678,K21679 - 2.5.1.103,4.2.3.156 0.000000000000000000000000000000000000000000000000000000000000000000002349 257.0
YYD3_k127_8576_8 Phytoene synthase K21678 - 2.5.1.103 0.000000000000000000000000000000000000000000000000000000000000002223 232.0
YYD3_k127_8576_9 Protein of unknown function (DUF498/DUF598) - - - 0.00000000000000000000000000000000000000000008457 162.0
YYD3_k127_913222_0 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008048 308.0
YYD3_k127_913222_1 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006993 284.0
YYD3_k127_913222_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009706 288.0
YYD3_k127_913222_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000009243 79.0
YYD3_k127_920252_0 Glutaminyl-tRNA synthetase K01886 - 6.1.1.18 9.926e-294 909.0
YYD3_k127_920252_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000001457 123.0
YYD3_k127_95008_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 7.453e-306 944.0
YYD3_k127_95008_1 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003372 406.0
YYD3_k127_95008_2 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 373.0
YYD3_k127_963178_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 6.957e-297 921.0
YYD3_k127_963178_1 single-stranded-DNA-specific exonuclease recJ K07462 - - 8.613e-215 683.0
YYD3_k127_963178_10 Enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 344.0
YYD3_k127_963178_11 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 325.0
YYD3_k127_963178_12 2-deoxy-d-gluconate 3-dehydrogenase K00019,K00065 - 1.1.1.127,1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 302.0
YYD3_k127_963178_13 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002148 252.0
YYD3_k127_963178_14 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001175 252.0
YYD3_k127_963178_15 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000000000003639 228.0
YYD3_k127_963178_16 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000001226 217.0
YYD3_k127_963178_17 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002775 220.0
YYD3_k127_963178_18 Bacterial protein of unknown function (DUF853) K06915 - - 0.0000000000000000000000000000000000000000000000000000001574 198.0
YYD3_k127_963178_19 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000004324 191.0
YYD3_k127_963178_2 CoA binding domain K17069 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47,2.5.1.49 1.706e-210 662.0
YYD3_k127_963178_20 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000003584 163.0
YYD3_k127_963178_21 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000004169 169.0
YYD3_k127_963178_22 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000001169 155.0
YYD3_k127_963178_23 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000000000000007939 132.0
YYD3_k127_963178_24 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000002671 134.0
YYD3_k127_963178_25 - - - - 0.000000000000000000000000000001125 126.0
YYD3_k127_963178_26 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000008475 126.0
YYD3_k127_963178_3 Aminotransferase K14261 - - 3.275e-197 633.0
YYD3_k127_963178_4 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009955 587.0
YYD3_k127_963178_5 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 557.0
YYD3_k127_963178_6 COG1494 Fructose-1,6-bisphosphatase sedoheptulose 1,7-bisphosphatase and related proteins K11532 - 3.1.3.11,3.1.3.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 525.0
YYD3_k127_963178_7 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005111 525.0
YYD3_k127_963178_8 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 441.0
YYD3_k127_963178_9 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 357.0