GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0002 |
|---|---|
| Name | BYD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 38.974444 N 115.9892 E |
| Altitude (m) | 8.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-09-25 |
| Physicochemical properties | |
| TN (g/kg) | 1.4923 |
| TP (g/kg) | 0.9530 |
| TS (g/kg) | 0.5602 |
| TC (g/kg) | 20.6500 |
| Fe (mg/kg) | 30721.6495 |
| Mn (mg/kg) | 585.5670 |
| C/N | 13.8380 |
| IC (g/kg) | 9.7973 |
| MBC (g/kg) | 0.3513 |
| pH | 7.9200 |
| Water content (%) | 0.2865 |
| NO3- (mg/kg) | 1.9739 |
| NH4+ (mg/kg) | 2.2462 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs37
The MAGs in SMP0002
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG00064 | BYD2_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__SCUD01;s__ | 91.49 | 3.82 | 70.0 | 61,626 | 2,978,022 |
| MAG00065 | BYD2_bin.13 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__Gp6-AA40 sp035711805 | 96.54 | 4.69 | 66.0 | 26,312 | 6,334,618 |
| MAG00066 | BYD2_bin.14 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__JACCXV01;f__JACCXV01;g__DATBJZ01;s__ | 91.78 | 0.39 | 75.0 | 9,594 | 2,754,736 |
| MAG00067 | BYD2_bin.15 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXN01;s__ | 87.11 | 0.47 | 68.0 | 13,719 | 5,690,988 |
| MAG00068 | BYD2_bin.16 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 91.35 | 3.89 | 64.0 | 32,258 | 6,017,722 |
| MAG00069 | BYD2_bin.17 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__JACPZX01;f__DASXTC01;g__DATEEA01;s__ | 82.53 | 4.74 | 70.0 | 6,014 | 3,410,030 |
| MAG00070 | BYD2_bin.2 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__JABDJR01;f__JABDJR01;g__;s__ | 84.63 | 0.95 | 63.0 | 5,512 | 3,185,140 |
| MAG00071 | BYD2_bin.21 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JBBDWZ01;s__ | 57.82 | 0.86 | 61.0 | 6,856 | 3,167,663 |
| MAG00072 | BYD2_bin.23 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEED01;s__ | 83.82 | 3.79 | 67.0 | 42,134 | 4,048,716 |
| MAG00073 | BYD2_bin.26 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2982;s__ | 92.61 | 2.06 | 68.0 | 44,612 | 3,928,709 |
| MAG00074 | BYD2_bin.27 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Lentimicrobiaceae;g__Lentimicrobium;s__ | 80.39 | 0.68 | 41.0 | 8,515 | 2,633,433 |
| MAG00075 | BYD2_bin.28 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SZUA-320;s__ | 85.43 | 1.59 | 67.0 | 22,680 | 3,549,960 |
| MAG00076 | BYD2_bin.29 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__ | 87.68 | 5.9 | 68.0 | 13,746 | 3,389,607 |
| MAG00077 | BYD2_bin.30 | d__Bacteria;p__ARS69;c__ARS69;o__ARS69;f__ARS69;g__;s__ | 86.65 | 1.81 | 63.0 | 5,064 | 2,832,332 |
| MAG00078 | BYD2_bin.32 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JABFSM01;s__ | 85.67 | 0.9 | 69.0 | 33,474 | 3,706,649 |
| MAG00079 | BYD2_bin.34 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JAICNY01;s__JAICNY01 sp025930955 | 79.96 | 0.55 | 73.0 | 6,260 | 2,269,508 |
| MAG00080 | BYD2_bin.35 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__39-52-133;s__ | 71.0 | 1.79 | 58.0 | 9,522 | 1,861,133 |
| MAG00081 | BYD2_bin.36 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__CAMLLJ01;s__CAMLLJ01 sp025928955 | 79.86 | 0.12 | 70.0 | 25,214 | 2,547,617 |
| MAG00082 | BYD2_bin.37 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 64.28 | 1.58 | 52.0 | 9,390 | 3,465,470 |
| MAG00083 | BYD2_bin.39 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__WS-9;s__ | 94.43 | 1.57 | 70.0 | 18,102 | 3,162,150 |
| MAG00084 | BYD2_bin.4 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 86.82 | 4.62 | 55.0 | 22,715 | 4,051,489 |
| MAG00085 | BYD2_bin.40 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19;s__ZC4RG19 sp035708905 | 90.83 | 2.15 | 74.0 | 17,597 | 5,284,463 |
| MAG00086 | BYD2_bin.41 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b;s__ | 94.49 | 1.58 | 65.0 | 35,923 | 5,292,155 |
| MAG00087 | BYD2_bin.42 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__DASTET01;s__DASTET01 sp035709445 | 90.05 | 2.91 | 58.0 | 6,223 | 5,278,900 |
| MAG00088 | BYD2_bin.44 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__Polarisedimenticolales;f__DASUFT01;g__DASUFT01;s__ | 90.21 | 1.85 | 71.0 | 14,823 | 3,986,136 |
| MAG00089 | BYD2_bin.46 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__;s__ | 70.46 | 3.7 | 69.0 | 8,249 | 3,755,719 |
| MAG00090 | BYD2_bin.47 | d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__JACCXM01;s__ | 87.07 | 1.52 | 64.0 | 19,782 | 4,588,608 |
| MAG00091 | BYD2_bin.49 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 80.09 | 5.17 | 67.0 | 49,469 | 4,437,065 |
| MAG00092 | BYD2_bin.5 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea;s__Chryseolinea sp025923195 | 100.0 | 5.44 | 44.0 | 59,964 | 6,729,763 |
| MAG00093 | BYD2_bin.50 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 84.35 | 3.91 | 68.0 | 23,680 | 5,254,974 |
| MAG00094 | BYD2_bin.51 | d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteriia;o__WVZY01;f__JAKEHA01;g__JAKEHA01;s__ | 75.96 | 0.32 | 66.0 | 7,996 | 2,660,177 |
| MAG00095 | BYD2_bin.53 | d__Bacteria;p__Acidobacteriota;c__UBA6911;o__RPQK01;f__RPQK01;g__RPQK01;s__ | 90.97 | 5.25 | 59.0 | 7,552 | 7,092,247 |
| MAG00096 | BYD2_bin.54 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABWBJ01;s__ | 76.09 | 1.74 | 67.0 | 15,132 | 3,224,387 |
| MAG00097 | BYD2_bin.6 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01;s__ | 79.08 | 3.97 | 71.0 | 9,733 | 3,433,358 |
| MAG00098 | BYD2_bin.7 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA10428;g__UBA5072;s__ | 95.1 | 0.08 | 42.0 | 25,420 | 4,151,258 |
| MAG00099 | BYD2_bin.8 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAS01;s__VBAS01 sp036374555 | 86.95 | 2.41 | 39.0 | 17,261 | 4,507,751 |
| MAG00100 | BYD2_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__SCGC-AG-212-J23 sp025929745 | 93.58 | 2.12 | 66.0 | 13,536 | 3,695,417 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |