GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0036 |
|---|---|
| Name | GGS3 |
| Type | marsh |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 23.083333 N 109.666667 E |
| Altitude (m) | 32.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-17 |
| Physicochemical properties | |
| TN (g/kg) | 0.7851 |
| TP (g/kg) | 0.6595 |
| TS (g/kg) | 0.1870 |
| TC (g/kg) | 12.8800 |
| Fe (mg/kg) | |
| Mn (mg/kg) | |
| C/N | 16.4057 |
| IC (g/kg) | 9.9321 |
| MBC (g/kg) | 0.1289 |
| pH | 8.0000 |
| Water content (%) | 0.2238 |
| NO3- (mg/kg) | -1.4428 |
| NH4+ (mg/kg) | 3.2675 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs29
The MAGs in SMP0036
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01386 | GGS3_bin.1 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D;s__ | 90.21 | 2.67 | 58.0 | 15,463 | 2,854,099 |
| MAG01387 | GGS3_bin.10 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Villigracilis;s__ | 96.89 | 4.14 | 49.0 | 58,267 | 5,179,897 |
| MAG01388 | GGS3_bin.12 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACPAP01;s__ | 88.28 | 4.09 | 68.0 | 12,511 | 4,389,495 |
| MAG01389 | GGS3_bin.13 | d__Bacteria;p__Planctomycetota;c__B15-G4;o__B15-G4;f__SIAN01;g__DASRRB01;s__ | 88.58 | 2.02 | 72.0 | 16,907 | 5,193,925 |
| MAG01390 | GGS3_bin.15 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__CADEEN01;s__ | 96.93 | 3.78 | 70.0 | 7,712 | 3,957,644 |
| MAG01391 | GGS3_bin.16 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 78.62 | 4.46 | 55.0 | 5,221 | 4,589,571 |
| MAG01392 | GGS3_bin.17 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Panacagrimonas;s__ | 78.91 | 2.72 | 68.0 | 15,799 | 3,616,639 |
| MAG01393 | GGS3_bin.19 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__DATECO01;f__DATECO01;g__;s__ | 85.43 | 1.15 | 52.0 | 9,049 | 1,732,316 |
| MAG01394 | GGS3_bin.2 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__;s__ | 77.55 | 5.19 | 73.0 | 6,218 | 3,536,873 |
| MAG01395 | GGS3_bin.20 | d__Bacteria;p__Actinomycetota;c__CALGFH01;o__CALGFH01;f__CALGFH01;g__;s__ | 89.18 | 4.25 | 73.0 | 4,631 | 5,297,419 |
| MAG01396 | GGS3_bin.21 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__SHYZ01;g__;s__ | 85.61 | 5.83 | 71.0 | 11,789 | 7,055,653 |
| MAG01397 | GGS3_bin.22 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__Gp22-AA2;f__AA152;g__;s__ | 85.69 | 1.09 | 70.0 | 4,906 | 3,311,575 |
| MAG01398 | GGS3_bin.24 | d__Bacteria;p__Tectomicrobia;c__Entotheonellia;o__Entotheonellales;f__Entotheonellaceae;g__;s__ | 81.16 | 3.94 | 62.0 | 5,255 | 5,246,644 |
| MAG01399 | GGS3_bin.26 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__NS-7;s__ | 80.69 | 1.89 | 58.0 | 15,052 | 2,283,761 |
| MAG01400 | GGS3_bin.27 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__GCA-2861595;g__DATLFN01;s__ | 57.06 | 0.88 | 73.0 | 2,720 | 1,841,446 |
| MAG01401 | GGS3_bin.29 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEED01;s__ | 77.22 | 2.07 | 64.0 | 11,365 | 3,243,344 |
| MAG01402 | GGS3_bin.3 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera;s__ | 71.58 | 2.45 | 53.0 | 10,632 | 1,034,480 |
| MAG01403 | GGS3_bin.30 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__UBA213;g__;s__ | 78.65 | 0.94 | 55.0 | 8,810 | 1,005,289 |
| MAG01404 | GGS3_bin.31 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA6663;g__;s__ | 81.55 | 0.4 | 64.0 | 7,657 | 3,261,012 |
| MAG01405 | GGS3_bin.33 | d__Archaea;p__Thermoproteota;c__Methanomethylicia;o__;f__;g__;s__ | 59.81 | 0.37 | 53.0 | 5,237 | 634,418 |
| MAG01406 | GGS3_bin.34 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__RBG-16-68-12;f__RBG-16-68-12;g__EA-19;s__ | 97.3 | 9.45 | 68.0 | 48,416 | 2,412,643 |
| MAG01407 | GGS3_bin.35 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__RBG-16-68-12;f__RBG-16-68-12;g__RBG-16-68-12;s__ | 81.37 | 4.83 | 66.0 | 14,900 | 1,818,429 |
| MAG01408 | GGS3_bin.36 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__NS-7;s__ | 74.28 | 2.27 | 59.0 | 6,449 | 1,897,368 |
| MAG01409 | GGS3_bin.37 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 78.47 | 5.33 | 53.0 | 15,584 | 3,823,474 |
| MAG01410 | GGS3_bin.38 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Dongia_A;s__ | 70.75 | 3.74 | 66.0 | 5,362 | 3,698,165 |
| MAG01411 | GGS3_bin.43 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter;s__ | 58.71 | 1.26 | 74.0 | 7,425 | 3,556,898 |
| MAG01412 | GGS3_bin.47 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__JAABQT01;s__ | 89.4 | 6.77 | 70.0 | 22,336 | 3,061,290 |
| MAG01413 | GGS3_bin.6 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA7937;f__UBA7937;g__JACPWV01;s__ | 87.78 | 3.95 | 62.0 | 4,075 | 1,854,652 |
| MAG01414 | GGS3_bin.9 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__20CM-2-70-11;s__ | 91.01 | 2.42 | 71.0 | 13,069 | 3,004,771 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |