GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0040 |
|---|---|
| Name | GZD1 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 22.851389 N 113.421667 E |
| Altitude (m) | -2.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 1.4995 |
| TP (g/kg) | 1.4981 |
| TS (g/kg) | 0.5968 |
| TC (g/kg) | 13.7700 |
| Fe (mg/kg) | 30454.3762 |
| Mn (mg/kg) | 326.8156 |
| C/N | 9.1828 |
| IC (g/kg) | 0.7477 |
| MBC (g/kg) | 0.1687 |
| pH | 5.2600 |
| Water content (%) | 0.3290 |
| NO3- (mg/kg) | -6.1765 |
| NH4+ (mg/kg) | 34.5101 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs50
The MAGs in SMP0040
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01486 | GZD1_bin.1 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Usitatibacteraceae;g__Usitatibacter;s__ | 79.81 | 2.05 | 70.0 | 11,312 | 3,144,367 |
| MAG01487 | GZD1_bin.12 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__CAMLIT01;s__ | 87.5 | 4.5 | 67.0 | 22,493 | 4,340,964 |
| MAG01488 | GZD1_bin.16 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__UBA184;f__UBA184;g__UBA184;s__ | 73.1 | 1.41 | 71.0 | 12,525 | 1,380,002 |
| MAG01489 | GZD1_bin.17 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__DATDDB01;s__ | 92.97 | 4.59 | 64.0 | 44,545 | 2,906,150 |
| MAG01490 | GZD1_bin.2 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__JACQDG01;g__DASQHK01;s__ | 84.95 | 2.39 | 64.0 | 9,826 | 5,562,535 |
| MAG01491 | GZD1_bin.20 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASTHG01;s__ | 75.28 | 1.21 | 69.0 | 33,346 | 3,132,404 |
| MAG01492 | GZD1_bin.21 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__40CM-2-70-7;s__ | 90.49 | 0.03 | 69.0 | 48,304 | 3,006,449 |
| MAG01493 | GZD1_bin.23 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__Gp7-AA10;s__ | 89.05 | 0.34 | 64.0 | 12,838 | 3,764,050 |
| MAG01494 | GZD1_bin.25 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__UBA7540;f__UBA7540;g__QHZK01;s__ | 83.71 | 1.05 | 63.0 | 15,311 | 3,957,909 |
| MAG01495 | GZD1_bin.26 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JADGQX01;s__ | 67.8 | 3.36 | 71.0 | 3,864 | 5,035,438 |
| MAG01496 | GZD1_bin.29 | d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__JAFAMS01;s__ | 91.28 | 2.89 | 63.0 | 9,854 | 3,363,009 |
| MAG01497 | GZD1_bin.3 | d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__JADMIN01;g__SMAG-U1939;s__SMAG-U1939 sp036376595 | 73.45 | 3.19 | 68.0 | 8,196 | 4,619,894 |
| MAG01498 | GZD1_bin.32 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 88.25 | 5.56 | 69.0 | 22,665 | 2,731,129 |
| MAG01499 | GZD1_bin.35 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__UBA8199;g__DATMRF01;s__ | 76.4 | 3.11 | 61.0 | 9,793 | 5,237,204 |
| MAG01500 | GZD1_bin.37 | d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__JADMIN01;g__DAHUXT01;s__ | 70.5 | 3.07 | 60.0 | 4,590 | 3,603,800 |
| MAG01501 | GZD1_bin.39 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JADGGM01;s__ | 74.32 | 1.85 | 67.0 | 14,705 | 3,590,863 |
| MAG01502 | GZD1_bin.4 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__UBA183;g__UBA183;s__ | 66.06 | 0.39 | 62.0 | 41,011 | 1,263,685 |
| MAG01503 | GZD1_bin.40 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__Binatales;f__Binataceae;g__JASHZA01;s__ | 87.81 | 6.54 | 62.0 | 13,098 | 3,116,685 |
| MAG01504 | GZD1_bin.41 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__;s__ | 96.95 | 0.29 | 66.0 | 36,092 | 3,214,950 |
| MAG01505 | GZD1_bin.42 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__DATGEO01;s__ | 97.09 | 3.05 | 69.0 | 48,729 | 3,014,430 |
| MAG01506 | GZD1_bin.43 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__;s__ | 86.72 | 2.88 | 59.0 | 5,286 | 2,715,579 |
| MAG01507 | GZD1_bin.44 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASQPE01;s__ | 93.37 | 2.38 | 72.0 | 7,233 | 3,232,054 |
| MAG01508 | GZD1_bin.45 | d__Bacteria;p__Bacteroidota_A;c__Kapaibacteriia;o__Palsa-1295;f__Palsa-1295;g__JAFDZW01;s__ | 67.76 | 2.89 | 58.0 | 3,775 | 2,456,282 |
| MAG01509 | GZD1_bin.48 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__ATCC43930;f__CGMCC-115725;g__DAHUYF01;s__ | 97.4 | 2.17 | 70.0 | 34,729 | 4,384,965 |
| MAG01510 | GZD1_bin.49 | d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Eremiobacterales;f__Eremiobacteraceae;g__JANWLL01;s__ | 92.59 | 2.66 | 69.0 | 10,945 | 2,527,528 |
| MAG01511 | GZD1_bin.5 | d__Bacteria;p__Patescibacteriota;c__Minisyncoccia;o__UBA6257;f__2-01-FULL-56-20;g__JANWIW01;s__ | 81.68 | 0.51 | 56.0 | 18,615 | 549,423 |
| MAG01512 | GZD1_bin.50 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8190;g__DATJBC01;s__ | 68.62 | 1.7 | 70.0 | 5,556 | 2,775,906 |
| MAG01513 | GZD1_bin.51 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__;s__ | 96.75 | 0.42 | 60.0 | 26,547 | 3,188,896 |
| MAG01514 | GZD1_bin.52 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__;s__ | 81.22 | 1.08 | 69.0 | 16,142 | 4,043,861 |
| MAG01515 | GZD1_bin.53 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__DATDDB01;s__ | 54.66 | 0.27 | 66.0 | 6,057 | 1,349,306 |
| MAG01516 | GZD1_bin.55 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__;s__ | 90.34 | 0.0 | 68.0 | 19,939 | 3,109,908 |
| MAG01517 | GZD1_bin.58 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__39-52-133;s__ | 53.82 | 0.49 | 62.0 | 6,699 | 1,368,547 |
| MAG01518 | GZD1_bin.59 | d__Bacteria;p__Patescibacteriota;c__Patescibacteriia;o__SG8-24;f__SG8-24;g__JAHFIW01;s__ | 80.11 | 1.34 | 67.0 | 7,551 | 1,270,496 |
| MAG01519 | GZD1_bin.6 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Acidiferrales;f__UBA7541;g__;s__ | 95.46 | 2.0 | 63.0 | 49,540 | 4,506,436 |
| MAG01520 | GZD1_bin.63 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__DATFVB01;g__;s__ | 80.79 | 2.03 | 67.0 | 5,501 | 2,498,343 |
| MAG01521 | GZD1_bin.66 | d__Bacteria;p__Nitrospirota;c__JACRHJ01;o__JACRHJ01;f__JACRHJ01;g__;s__ | 97.17 | 0.0 | 58.0 | 23,905 | 2,531,451 |
| MAG01522 | GZD1_bin.67 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 74.97 | 0.01 | 71.0 | 26,636 | 2,116,545 |
| MAG01523 | GZD1_bin.68 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Gp1-AA117;g__Angelobacter;s__ | 69.46 | 2.11 | 58.0 | 9,145 | 3,782,773 |
| MAG01524 | GZD1_bin.69 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASTHG01;s__ | 97.61 | 3.16 | 69.0 | 38,707 | 3,776,608 |
| MAG01525 | GZD1_bin.7 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Palsa-881;s__ | 78.23 | 1.41 | 70.0 | 9,273 | 3,406,816 |
| MAG01526 | GZD1_bin.70 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__UBA183;g__BOG-1369;s__ | 81.51 | 0.55 | 61.0 | 12,980 | 1,594,431 |
| MAG01527 | GZD1_bin.71 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__JACORV01;g__;s__ | 66.93 | 1.99 | 70.0 | 9,900 | 2,247,197 |
| MAG01528 | GZD1_bin.74 | d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Tumulicola;s__ | 65.46 | 0.23 | 66.0 | 4,397 | 1,827,066 |
| MAG01529 | GZD1_bin.76 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__DASQJL01;s__ | 66.06 | 0.2 | 70.0 | 5,752 | 1,964,764 |
| MAG01530 | GZD1_bin.78 | d__Bacteria;p__Sysuimicrobiota;c__Sysuimicrobiia;o__Sysuimicrobiales;f__Segetimicrobiaceae;g__DASSJF01;s__DASSJF01 sp035691305 | 91.66 | 3.41 | 70.0 | 62,745 | 3,845,355 |
| MAG01531 | GZD1_bin.79 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__ | 84.89 | 1.5 | 67.0 | 13,938 | 3,244,189 |
| MAG01532 | GZD1_bin.80 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__Binatales;f__Binataceae;g__JAKAVN01;s__ | 94.83 | 4.17 | 68.0 | 37,294 | 4,051,610 |
| MAG01533 | GZD1_bin.81 | d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__QHBQ01;f__JADMIH01;g__JADMIH01;s__ | 59.09 | 0.98 | 61.0 | 3,080 | 3,672,284 |
| MAG01534 | GZD1_bin.82 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Micromonosporaceae;g__Rugosimonospora;s__ | 71.25 | 3.2 | 72.0 | 5,425 | 5,470,672 |
| MAG01535 | GZD1_bin.9 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__SbA1;g__Gp1-AA145;s__ | 82.77 | 2.26 | 57.0 | 14,758 | 4,060,005 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |