GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0041 |
|---|---|
| Name | GZD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 22.851389 N 113.421667 E |
| Altitude (m) | -2.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 1.5987 |
| TP (g/kg) | 2.1967 |
| TS (g/kg) | 0.5266 |
| TC (g/kg) | 16.8400 |
| Fe (mg/kg) | 26260.3550 |
| Mn (mg/kg) | 223.8659 |
| C/N | 10.5333 |
| IC (g/kg) | 3.1530 |
| MBC (g/kg) | 0.1609 |
| pH | 5.3300 |
| Water content (%) | 0.2939 |
| NO3- (mg/kg) | 11.3770 |
| NH4+ (mg/kg) | 19.8556 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs38
The MAGs in SMP0041
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01536 | GZD2_bin.1 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Usitatibacteraceae;g__Usitatibacter;s__ | 68.11 | 2.56 | 70.0 | 11,158 | 2,393,801 |
| MAG01537 | GZD2_bin.10 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Palsa-881;s__ | 84.24 | 2.69 | 70.0 | 9,789 | 3,464,760 |
| MAG01538 | GZD2_bin.12 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 66.75 | 1.63 | 70.0 | 14,830 | 2,922,040 |
| MAG01539 | GZD2_bin.14 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Gp1-AA117;g__Angelobacter;s__ | 75.5 | 1.95 | 59.0 | 9,270 | 3,720,082 |
| MAG01540 | GZD2_bin.15 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__FEN-1139;s__ | 72.97 | 2.59 | 59.0 | 4,320 | 5,319,834 |
| MAG01541 | GZD2_bin.17 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__;s__ | 65.69 | 1.03 | 69.0 | 6,292 | 4,026,214 |
| MAG01542 | GZD2_bin.18 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__DATDDB01;s__ | 100.0 | 1.94 | 64.0 | 59,290 | 2,875,298 |
| MAG01543 | GZD2_bin.19 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__DASQJL01;s__ | 79.79 | 1.13 | 70.0 | 5,736 | 2,406,236 |
| MAG01544 | GZD2_bin.20 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__JABFXX01;s__ | 88.59 | 2.34 | 68.0 | 18,425 | 6,977,413 |
| MAG01545 | GZD2_bin.21 | d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__FACHB-T130;g__FACHB-831;s__ | 62.07 | 1.07 | 49.0 | 3,709 | 5,781,559 |
| MAG01546 | GZD2_bin.26 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__DATFVB01;g__;s__ | 75.91 | 3.24 | 69.0 | 7,558 | 2,591,089 |
| MAG01547 | GZD2_bin.27 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__OLB5;g__;s__ | 84.88 | 1.31 | 42.0 | 9,970 | 2,926,182 |
| MAG01548 | GZD2_bin.28 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__Gp7-AA10;s__ | 85.32 | 3.21 | 64.0 | 12,036 | 4,166,524 |
| MAG01549 | GZD2_bin.3 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JADGGM01;s__ | 89.12 | 2.07 | 67.0 | 25,740 | 3,949,153 |
| MAG01550 | GZD2_bin.30 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__DASXQK01;s__ | 68.85 | 1.28 | 68.0 | 5,649 | 3,029,382 |
| MAG01551 | GZD2_bin.31 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 92.81 | 2.41 | 67.0 | 19,723 | 3,461,114 |
| MAG01552 | GZD2_bin.32 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__CF-39;s__ | 70.16 | 1.36 | 69.0 | 13,337 | 2,177,975 |
| MAG01553 | GZD2_bin.33 | d__Bacteria;p__Patescibacteriota;c__Minisyncoccia;o__UBA9973;f__PALSA-1337;g__C7867-002;s__ | 86.51 | 0.04 | 55.0 | 13,556 | 598,557 |
| MAG01554 | GZD2_bin.36 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Korobacteraceae;g__JAVUPY01;s__ | 67.86 | 2.19 | 58.0 | 15,268 | 3,752,768 |
| MAG01555 | GZD2_bin.37 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__DSYU01;s__ | 75.18 | 2.31 | 57.0 | 8,684 | 2,650,269 |
| MAG01556 | GZD2_bin.38 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__DATIXJ01;s__ | 92.43 | 5.36 | 64.0 | 26,386 | 3,236,977 |
| MAG01557 | GZD2_bin.4 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__40CM-2-70-7;s__ | 87.5 | 3.0 | 69.0 | 24,444 | 2,853,827 |
| MAG01558 | GZD2_bin.40 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys;s__ | 95.48 | 1.09 | 67.0 | 34,783 | 3,770,283 |
| MAG01559 | GZD2_bin.42 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__Binatales;f__Binataceae;g__DATGKG01;s__ | 79.43 | 5.14 | 64.0 | 4,890 | 2,892,923 |
| MAG01560 | GZD2_bin.45 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASTHG01;s__ | 95.33 | 0.43 | 69.0 | 51,302 | 3,777,177 |
| MAG01561 | GZD2_bin.47 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__DATGEO01;s__ | 91.47 | 1.24 | 69.0 | 47,545 | 2,924,426 |
| MAG01562 | GZD2_bin.49 | d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__QHBQ01;f__JADMIH01;g__JADMIH01;s__ | 78.17 | 3.31 | 61.0 | 6,262 | 4,382,939 |
| MAG01563 | GZD2_bin.5 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__UBA7540;f__UBA7540;g__JAHEKS01;s__ | 54.97 | 0.04 | 61.0 | 19,048 | 1,925,655 |
| MAG01564 | GZD2_bin.51 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAFAIN01;g__DASRER01;s__ | 87.1 | 2.42 | 63.0 | 18,841 | 4,222,503 |
| MAG01565 | GZD2_bin.55 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__;s__ | 97.68 | 5.01 | 60.0 | 26,566 | 3,303,531 |
| MAG01566 | GZD2_bin.56 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__ATCC43930;f__CGMCC-115725;g__DASZHJ01;s__ | 85.23 | 5.57 | 67.0 | 10,436 | 4,206,073 |
| MAG01567 | GZD2_bin.57 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__DATDDB01;s__ | 78.77 | 2.9 | 65.0 | 7,571 | 2,270,092 |
| MAG01568 | GZD2_bin.58 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__UBA8199;g__DATMRF01;s__ | 79.58 | 1.06 | 60.0 | 17,004 | 5,369,353 |
| MAG01569 | GZD2_bin.59 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 72.45 | 2.92 | 50.0 | 6,613 | 4,210,292 |
| MAG01570 | GZD2_bin.6 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__ | 78.8 | 2.78 | 72.0 | 7,220 | 3,444,274 |
| MAG01571 | GZD2_bin.7 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASQPE01;s__ | 74.29 | 2.8 | 72.0 | 4,837 | 1,796,445 |
| MAG01572 | GZD2_bin.8 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter;s__ | 84.92 | 5.96 | 75.0 | 12,501 | 3,772,055 |
| MAG01573 | GZD2_bin.9 | d__Bacteria;p__Bacteroidota_A;c__Kapaibacteriia;o__;f__;g__;s__ | 74.17 | 0.5 | 63.0 | 5,213 | 2,273,030 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |