GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0045 |
|---|---|
| Name | HFD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 31.6475 N 117.743333 E |
| Altitude (m) | 6.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 2.2330 |
| TP (g/kg) | 0.6779 |
| TS (g/kg) | 0.1729 |
| TC (g/kg) | 25.2900 |
| Fe (mg/kg) | 23533.3333 |
| Mn (mg/kg) | 389.0041 |
| C/N | 11.3254 |
| IC (g/kg) | 4.0614 |
| MBC (g/kg) | 0.9879 |
| pH | 7.4800 |
| Water content (%) | 0.3619 |
| NO3- (mg/kg) | -8.1531 |
| NH4+ (mg/kg) | 3.7909 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs27
The MAGs in SMP0045
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01673 | HFD3_bin.1 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__20CM-2-55-15;f__20CM-2-55-15;g__DASTBJ01;s__ | 93.3 | 3.37 | 59.0 | 18,045 | 4,921,651 |
| MAG01674 | HFD3_bin.10 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__OLB5;g__DASXTZ01;s__ | 71.26 | 0.72 | 41.0 | 5,056 | 2,168,607 |
| MAG01675 | HFD3_bin.11 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABWBJ01;s__ | 73.18 | 3.81 | 66.0 | 6,789 | 3,414,285 |
| MAG01676 | HFD3_bin.13 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UBA9968;f__UBA9968;g__JACPFE01;s__ | 90.95 | 2.86 | 57.0 | 13,090 | 5,187,452 |
| MAG01677 | HFD3_bin.15 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__JAERML01;s__ | 100.0 | 3.05 | 56.0 | 15,906 | 3,806,219 |
| MAG01678 | HFD3_bin.16 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__OLB17;s__ | 89.46 | 1.84 | 54.0 | 6,365 | 3,275,600 |
| MAG01679 | HFD3_bin.18 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__JADJPG01;g__;s__ | 66.4 | 0.34 | 66.0 | 7,861 | 3,948,649 |
| MAG01680 | HFD3_bin.19 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA4142;f__UBA4142;g__JACQYF01;s__ | 81.15 | 4.58 | 57.0 | 7,481 | 4,150,441 |
| MAG01681 | HFD3_bin.20 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__2-12-FULL-66-21;g__;s__ | 77.61 | 2.84 | 70.0 | 12,783 | 4,341,119 |
| MAG01682 | HFD3_bin.22 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720;s__ | 53.27 | 0.33 | 60.0 | 4,048 | 2,104,309 |
| MAG01683 | HFD3_bin.23 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__FEB-35;s__ | 96.6 | 4.8 | 65.0 | 16,537 | 2,593,667 |
| MAG01684 | HFD3_bin.24 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__JBFMDH01;s__ | 75.64 | 1.64 | 52.0 | 3,572 | 5,629,203 |
| MAG01685 | HFD3_bin.26 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__DASTPH01;s__ | 87.88 | 2.23 | 75.0 | 7,168 | 4,193,269 |
| MAG01686 | HFD3_bin.28 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAENVT01;s__ | 83.86 | 1.8 | 67.0 | 35,391 | 4,189,216 |
| MAG01687 | HFD3_bin.29 | d__Bacteria;p__Nitrospirota;c__JACRHJ01;o__JACRHJ01;f__JACRHJ01;g__;s__ | 70.05 | 2.49 | 61.0 | 4,858 | 1,778,574 |
| MAG01688 | HFD3_bin.30 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__;s__ | 88.55 | 2.11 | 70.0 | 19,262 | 5,451,429 |
| MAG01689 | HFD3_bin.31 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__JADGNW01;s__ | 97.66 | 0.04 | 55.0 | 37,294 | 5,852,015 |
| MAG01690 | HFD3_bin.32 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189;s__ | 74.08 | 0.42 | 71.0 | 19,946 | 2,484,183 |
| MAG01691 | HFD3_bin.33 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__DATKAB01;s__ | 90.48 | 0.18 | 72.0 | 37,452 | 4,098,739 |
| MAG01692 | HFD3_bin.34 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAENVT01;s__ | 95.01 | 2.77 | 67.0 | 30,693 | 4,302,823 |
| MAG01693 | HFD3_bin.36 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 95.09 | 0.06 | 56.0 | 36,780 | 6,068,921 |
| MAG01694 | HFD3_bin.38 | d__Archaea;p__Thermoproteota;c__Bathyarchaeia;o__Bathyarchaeales;f__Bathycorpusculaceae;g__UBA11855;s__UBA11855 sp035297385 | 77.49 | 2.92 | 40.0 | 5,636 | 1,720,335 |
| MAG01695 | HFD3_bin.39 | d__Bacteria;p__Nitrospirota;c__UBA9217;o__UBA9217;f__UBA9217;g__DASPSR01;s__ | 86.5 | 3.25 | 52.0 | 9,287 | 3,171,113 |
| MAG01696 | HFD3_bin.4 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__CF-39;s__ | 75.48 | 1.91 | 70.0 | 6,245 | 2,167,505 |
| MAG01697 | HFD3_bin.40 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__JAUVRN01;f__JAUVRN01;g__DAIOGN01;s__ | 69.35 | 0.26 | 63.0 | 4,843 | 2,342,025 |
| MAG01698 | HFD3_bin.5 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAR01;s__ | 57.39 | 0.99 | 39.0 | 11,216 | 2,690,469 |
| MAG01699 | HFD3_bin.7 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__SZUA-254;s__ | 53.38 | 0.27 | 64.0 | 5,001 | 1,559,331 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |