GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0049 |
|---|---|
| Name | HSJS1 |
| Type | coastal |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 37.725833 N 119.239722 E |
| Altitude (m) | 1.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-05-11 |
| Physicochemical properties | |
| TN (g/kg) | 0.7098 |
| TP (g/kg) | 0.5458 |
| TS (g/kg) | 0.2340 |
| TC (g/kg) | 18.1000 |
| Fe (mg/kg) | 25394.0972 |
| Mn (mg/kg) | 421.8750 |
| C/N | 25.4989 |
| IC (g/kg) | 16.8829 |
| MBC (g/kg) | 0.1198 |
| pH | 8.8200 |
| Water content (%) | 0.2272 |
| NO3- (mg/kg) | -1.4969 |
| NH4+ (mg/kg) | 6.1957 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs28
The MAGs in SMP0049
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01883 | HSJS1_bin.1 | d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA2979;f__UBA2979;g__;s__ | 75.81 | 2.2 | 70.0 | 7,606 | 2,432,151 |
| MAG01884 | HSJS1_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JAUIBE01;s__ | 79.09 | 0.18 | 62.0 | 13,908 | 2,469,573 |
| MAG01885 | HSJS1_bin.11 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Eutrophobiales;f__Eutrophobiaceae;g__SZUA-592;s__SZUA-592 sp041556555 | 68.04 | 0.5 | 49.0 | 6,436 | 1,252,272 |
| MAG01886 | HSJS1_bin.13 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax;s__Alcanivorax sediminis | 88.57 | 0.76 | 58.0 | 24,744 | 3,472,152 |
| MAG01887 | HSJS1_bin.14 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDJL01;s__ | 98.75 | 3.24 | 59.0 | 27,904 | 2,874,215 |
| MAG01888 | HSJS1_bin.15 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Palauibacterales;f__Palauibacteraceae;g__;s__ | 78.07 | 0.46 | 74.0 | 11,148 | 2,677,238 |
| MAG01889 | HSJS1_bin.18 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 99.7 | 0.94 | 67.0 | 19,309 | 7,496,529 |
| MAG01890 | HSJS1_bin.2 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__UBA5794;g__;s__ | 97.06 | 1.56 | 67.0 | 23,955 | 3,356,515 |
| MAG01891 | HSJS1_bin.27 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Nitrosococcales;f__Methylophagaceae;g__Methylophaga;s__ | 89.06 | 3.63 | 48.0 | 2,820 | 1,670,190 |
| MAG01892 | HSJS1_bin.28 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__DATKCF01;s__ | 75.68 | 3.04 | 68.0 | 5,898 | 4,946,621 |
| MAG01893 | HSJS1_bin.29 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga;s__ | 70.98 | 2.9 | 43.0 | 3,710 | 3,202,268 |
| MAG01894 | HSJS1_bin.3 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__JARGPN01;s__ | 79.43 | 4.16 | 52.0 | 9,228 | 2,520,394 |
| MAG01895 | HSJS1_bin.30 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Balneatricaceae;g__Motiliproteus;s__ | 76.85 | 2.13 | 64.0 | 9,104 | 3,223,390 |
| MAG01896 | HSJS1_bin.32 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Kiloniellales;f__J153;g__;s__ | 81.25 | 0.24 | 69.0 | 15,522 | 2,515,028 |
| MAG01897 | HSJS1_bin.33 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Balneatricaceae;g__Motiliproteus;s__ | 90.34 | 2.46 | 61.0 | 39,367 | 3,446,578 |
| MAG01898 | HSJS1_bin.34 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Multivoradales;f__;g__;s__ | 86.19 | 2.23 | 69.0 | 5,813 | 4,405,381 |
| MAG01899 | HSJS1_bin.35 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Kiloniellales;f__CECT-8803;g__JARRJC01;s__ | 83.44 | 0.21 | 66.0 | 12,638 | 2,386,279 |
| MAG01900 | HSJS1_bin.36 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Thalassolituus;s__ | 86.57 | 0.71 | 47.0 | 31,610 | 3,251,537 |
| MAG01901 | HSJS1_bin.38 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax;s__Alcanivorax jadensis_A | 78.51 | 4.56 | 60.0 | 5,074 | 2,871,685 |
| MAG01902 | HSJS1_bin.39 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__UBA5794;g__SZUA-442;s__ | 92.21 | 2.71 | 65.0 | 9,137 | 2,395,668 |
| MAG01903 | HSJS1_bin.40 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__;s__ | 93.32 | 2.56 | 60.0 | 14,679 | 2,997,865 |
| MAG01904 | HSJS1_bin.44 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Palauibacterales;f__Palauibacteraceae;g__JARFPW01;s__ | 78.44 | 1.44 | 69.0 | 6,016 | 1,599,264 |
| MAG01905 | HSJS1_bin.45 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella;s__ | 92.5 | 2.24 | 45.0 | 15,738 | 4,036,338 |
| MAG01906 | HSJS1_bin.46 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas;s__ | 70.16 | 3.06 | 68.0 | 3,735 | 2,760,519 |
| MAG01907 | HSJS1_bin.6 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__JACCXV01;f__JAHWKZ01;g__CAMYLR01;s__ | 97.93 | 0.07 | 62.0 | 73,374 | 2,858,802 |
| MAG01908 | HSJS1_bin.7 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Multivoradales;f__JAHEKO01;g__CALZJC01;s__ | 76.0 | 1.05 | 72.0 | 13,829 | 3,801,577 |
| MAG01909 | HSJS1_bin.8 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA11579;g__UBA11579;s__ | 74.8 | 3.85 | 54.0 | 6,794 | 2,981,667 |
| MAG01910 | HSJS1_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E sp038069885 | 99.21 | 1.96 | 63.0 | 7,986 | 3,939,614 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |