GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0050 |
|---|---|
| Name | HSJS2 |
| Type | coastal |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 37.725833 N 119.239722 E |
| Altitude (m) | 1.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-05-11 |
| Physicochemical properties | |
| TN (g/kg) | 0.6989 |
| TP (g/kg) | 0.3914 |
| TS (g/kg) | 0.2817 |
| TC (g/kg) | 17.6200 |
| Fe (mg/kg) | 25622.8814 |
| Mn (mg/kg) | 433.6283 |
| C/N | 25.2123 |
| IC (g/kg) | 15.8470 |
| MBC (g/kg) | 0.1126 |
| pH | 8.8200 |
| Water content (%) | 0.2189 |
| NO3- (mg/kg) | -0.6463 |
| NH4+ (mg/kg) | 1.7773 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs24
The MAGs in SMP0050
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01911 | HSJS2_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 90.1 | 2.04 | 67.0 | 9,041 | 6,900,310 |
| MAG01912 | HSJS2_bin.11 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Nitrosococcales;f__Methylophagaceae;g__Methylophaga;s__ | 64.86 | 1.65 | 48.0 | 2,151 | 1,436,874 |
| MAG01913 | HSJS2_bin.12 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__UBA5794;g__SZUA-442;s__ | 81.15 | 0.54 | 65.0 | 10,788 | 2,005,385 |
| MAG01914 | HSJS2_bin.13 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 85.72 | 3.72 | 48.0 | 7,054 | 3,262,175 |
| MAG01915 | HSJS2_bin.14 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Eutrophobiales;f__Eutrophobiaceae;g__SZUA-592;s__SZUA-592 sp041556555 | 74.25 | 2.6 | 50.0 | 6,731 | 1,225,230 |
| MAG01916 | HSJS2_bin.15 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__UBA5794;g__;s__ | 89.46 | 1.9 | 67.0 | 19,057 | 3,256,418 |
| MAG01917 | HSJS2_bin.16 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Kiloniellales;f__J153;g__;s__ | 76.75 | 2.94 | 68.0 | 11,952 | 2,841,051 |
| MAG01918 | HSJS2_bin.2 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Kiloniellales;f__CECT-8803;g__JARRJC01;s__ | 92.41 | 2.09 | 66.0 | 9,564 | 2,464,815 |
| MAG01919 | HSJS2_bin.21 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Multivoradales;f__;g__;s__ | 80.91 | 2.42 | 69.0 | 6,599 | 4,807,666 |
| MAG01920 | HSJS2_bin.22 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2589;s__ | 75.09 | 1.16 | 69.0 | 8,906 | 3,448,591 |
| MAG01921 | HSJS2_bin.24 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__DATKCF01;s__ | 64.77 | 2.21 | 68.0 | 4,678 | 4,090,578 |
| MAG01922 | HSJS2_bin.26 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Thalassolituus;s__ | 90.36 | 0.33 | 47.0 | 38,424 | 3,426,225 |
| MAG01923 | HSJS2_bin.27 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__;s__ | 82.4 | 2.65 | 69.0 | 5,528 | 2,173,478 |
| MAG01924 | HSJS2_bin.29 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JAUIBE01;s__ | 94.06 | 4.99 | 62.0 | 11,197 | 3,556,564 |
| MAG01925 | HSJS2_bin.3 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466;s__ | 86.62 | 1.65 | 45.0 | 5,290 | 3,086,628 |
| MAG01926 | HSJS2_bin.30 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__JARGPN01;s__ | 87.69 | 4.36 | 52.0 | 7,856 | 3,008,565 |
| MAG01927 | HSJS2_bin.31 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDJL01;s__ | 95.15 | 2.81 | 59.0 | 19,667 | 3,031,583 |
| MAG01928 | HSJS2_bin.33 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA11579;g__UBA11579;s__ | 63.12 | 1.71 | 54.0 | 6,612 | 2,736,261 |
| MAG01929 | HSJS2_bin.34 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax;s__Alcanivorax sediminis | 99.87 | 0.76 | 58.0 | 24,094 | 3,802,157 |
| MAG01930 | HSJS2_bin.36 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Palauibacterales;f__Palauibacteraceae;g__JARFPW01;s__ | 74.5 | 0.71 | 70.0 | 5,049 | 1,470,297 |
| MAG01931 | HSJS2_bin.4 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Multivoradales;f__JAHEKO01;g__CALZJC01;s__ | 84.13 | 1.84 | 72.0 | 13,831 | 4,475,249 |
| MAG01932 | HSJS2_bin.7 | d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA2979;f__UBA2979;g__;s__ | 61.66 | 2.21 | 70.0 | 5,236 | 2,203,811 |
| MAG01933 | HSJS2_bin.8 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__JACCXV01;f__JAHWKZ01;g__CAMYLR01;s__ | 95.84 | 0.55 | 62.0 | 21,569 | 2,820,039 |
| MAG01934 | HSJS2_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E sp038069885 | 83.87 | 2.7 | 63.0 | 7,357 | 4,041,980 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |