GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0053 |
|---|---|
| Name | LYD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 42.9756 N 125.4875 E |
| Altitude (m) | 368.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-14 |
| Physicochemical properties | |
| TN (g/kg) | 1.5528 |
| TP (g/kg) | 0.5579 |
| TS (g/kg) | 0.5152 |
| TC (g/kg) | 18.7500 |
| Fe (mg/kg) | 26537.2549 |
| Mn (mg/kg) | 672.5490 |
| C/N | 12.0751 |
| IC (g/kg) | 2.1747 |
| MBC (g/kg) | 0.1263 |
| pH | 6.2100 |
| Water content (%) | 0.2282 |
| NO3- (mg/kg) | 4.7385 |
| NH4+ (mg/kg) | 2.9859 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs10
The MAGs in SMP0053
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG02038 | LYD2_bin.1 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA6898;g__Sulfobium;s__ | 82.87 | 2.15 | 51.0 | 8,283 | 2,186,184 |
| MAG02039 | LYD2_bin.12 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__;s__ | 69.04 | 1.29 | 58.0 | 8,815 | 1,878,028 |
| MAG02040 | LYD2_bin.14 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__;s__ | 54.39 | 0.08 | 70.0 | 8,698 | 1,614,421 |
| MAG02041 | LYD2_bin.16 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__VadinHA17;g__LD21;s__ | 95.9 | 2.64 | 41.0 | 15,449 | 3,828,161 |
| MAG02042 | LYD2_bin.17 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__CAIWHR01;s__ | 63.48 | 1.58 | 68.0 | 6,380 | 2,552,614 |
| MAG02043 | LYD2_bin.19 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__DAHUXD01;s__ | 74.71 | 0.99 | 70.0 | 8,312 | 2,842,923 |
| MAG02044 | LYD2_bin.2 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__RPQJ01;s__ | 80.89 | 0.98 | 68.0 | 54,912 | 2,309,611 |
| MAG02045 | LYD2_bin.6 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rudaea;s__ | 81.91 | 2.33 | 65.0 | 12,232 | 3,555,471 |
| MAG02046 | LYD2_bin.7 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__DASZVB01;s__ | 64.58 | 1.35 | 67.0 | 8,613 | 5,918,142 |
| MAG02047 | LYD2_bin.9 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Palsa-1315;s__ | 82.59 | 0.86 | 56.0 | 7,353 | 3,463,472 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |