GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0068 |
|---|---|
| Name | PJD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 40.95 N 122.0194 E |
| Altitude (m) | 4.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-28 |
| Physicochemical properties | |
| TN (g/kg) | 1.2913 |
| TP (g/kg) | 0.6143 |
| TS (g/kg) | 1.3084 |
| TC (g/kg) | 13.3100 |
| Fe (mg/kg) | 20275.7974 |
| Mn (mg/kg) | 377.1107 |
| C/N | 10.3075 |
| IC (g/kg) | 0.4775 |
| MBC (g/kg) | 0.1414 |
| pH | 7.4700 |
| Water content (%) | 0.2519 |
| NO3- (mg/kg) | -7.9138 |
| NH4+ (mg/kg) | 3.9380 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs29
The MAGs in SMP0068
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG02894 | PJD2_bin.1 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720;s__ | 84.14 | 1.57 | 60.0 | 11,198 | 3,278,698 |
| MAG02895 | PJD2_bin.13 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__VadinHA17;g__SR-FBR-E99;s__ | 91.46 | 0.19 | 51.0 | 11,019 | 2,884,197 |
| MAG02896 | PJD2_bin.14 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__RBG-16-66-30;g__RBG-16-66-30;s__ | 80.27 | 3.8 | 67.0 | 7,572 | 2,798,250 |
| MAG02897 | PJD2_bin.16 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJLQ01;s__ | 86.9 | 2.36 | 48.0 | 15,926 | 4,571,082 |
| MAG02898 | PJD2_bin.18 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Tsuneonella;s__ | 59.4 | 0.59 | 68.0 | 9,601 | 1,459,480 |
| MAG02899 | PJD2_bin.2 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__JAGDMK01;s__ | 91.98 | 0.05 | 59.0 | 7,471 | 4,175,911 |
| MAG02900 | PJD2_bin.21 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Opimibacter;s__ | 92.39 | 1.97 | 45.0 | 15,057 | 3,698,146 |
| MAG02901 | PJD2_bin.22 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia;s__ | 74.82 | 2.22 | 40.0 | 4,289 | 2,016,964 |
| MAG02902 | PJD2_bin.23 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__Ilumatobacter;s__ | 77.15 | 4.55 | 70.0 | 8,249 | 3,550,741 |
| MAG02903 | PJD2_bin.24 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SZUA-320;s__ | 95.3 | 0.56 | 69.0 | 39,205 | 3,356,134 |
| MAG02904 | PJD2_bin.25 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720;s__ | 76.97 | 1.4 | 63.0 | 20,752 | 3,223,175 |
| MAG02905 | PJD2_bin.26 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SPDF01;s__ | 88.96 | 2.71 | 70.0 | 24,842 | 2,917,801 |
| MAG02906 | PJD2_bin.27 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__RBG-16-66-20;s__ | 58.63 | 1.17 | 68.0 | 4,330 | 1,702,141 |
| MAG02907 | PJD2_bin.28 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__Fen-1039;s__ | 81.68 | 0.43 | 70.0 | 13,558 | 2,286,709 |
| MAG02908 | PJD2_bin.29 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Fen-1088;f__Fen-1088;g__Fen-1118;s__ | 66.5 | 3.28 | 68.0 | 5,246 | 4,935,394 |
| MAG02909 | PJD2_bin.3 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__SZUA-254;s__ | 54.3 | 0.47 | 65.0 | 4,337 | 1,829,376 |
| MAG02910 | PJD2_bin.31 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__DATKLQ01;s__ | 85.17 | 5.37 | 39.0 | 5,342 | 3,241,559 |
| MAG02911 | PJD2_bin.32 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__SURF-23;s__ | 84.38 | 3.61 | 50.0 | 6,143 | 2,106,907 |
| MAG02912 | PJD2_bin.33 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__ | 93.06 | 0.05 | 61.0 | 81,032 | 2,132,194 |
| MAG02913 | PJD2_bin.34 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008;s__ | 71.06 | 1.01 | 46.0 | 2,342 | 1,947,726 |
| MAG02914 | PJD2_bin.35 | d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteriia;o__WVZY01;f__JAKEHA01;g__;s__ | 85.72 | 0.15 | 64.0 | 12,618 | 2,882,785 |
| MAG02915 | PJD2_bin.37 | d__Bacteria;p__Patescibacteriota;c__Microgenomatia;o__GWA2-44-7;f__UBA8517;g__WO2-FULL-39-9;s__ | 96.35 | 0.29 | 40.0 | 24,986 | 1,278,953 |
| MAG02916 | PJD2_bin.38 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA6898;g__JAOUFP01;s__ | 72.0 | 2.71 | 48.0 | 6,415 | 1,691,649 |
| MAG02917 | PJD2_bin.39 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E sp036276395 | 73.3 | 1.34 | 63.0 | 4,589 | 3,366,970 |
| MAG02918 | PJD2_bin.4 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA2201;f__UBA2201;g__UBA2201;s__ | 75.8 | 3.51 | 65.0 | 4,405 | 2,567,005 |
| MAG02919 | PJD2_bin.42 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Tenderiales;f__Tenderiaceae;g__JAKFXL01;s__ | 70.64 | 3.02 | 57.0 | 2,017 | 1,708,006 |
| MAG02920 | PJD2_bin.5 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__JAENWF01;s__ | 80.85 | 1.6 | 64.0 | 9,062 | 3,857,917 |
| MAG02921 | PJD2_bin.6 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Palsa-1315;s__ | 83.84 | 1.07 | 56.0 | 9,884 | 3,107,519 |
| MAG02922 | PJD2_bin.9 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN2;s__ | 70.86 | 4.05 | 37.0 | 6,707 | 2,229,915 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |