GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0069 |
|---|---|
| Name | PJD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 40.95 N 122.0194 E |
| Altitude (m) | 4.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-28 |
| Physicochemical properties | |
| TN (g/kg) | 0.8128 |
| TP (g/kg) | 0.3783 |
| TS (g/kg) | 0.4554 |
| TC (g/kg) | 6.4000 |
| Fe (mg/kg) | 20335.1648 |
| Mn (mg/kg) | 487.1795 |
| C/N | 7.8743 |
| IC (g/kg) | 1.1802 |
| MBC (g/kg) | 0.1280 |
| pH | 8.1800 |
| Water content (%) | 0.2684 |
| NO3- (mg/kg) | -8.3233 |
| NH4+ (mg/kg) | 3.3213 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs27
The MAGs in SMP0069
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG02923 | PJD3_bin.10 | d__Bacteria;p__Desulfobacterota_C;c__Deferrisomatia;o__Deferrisomatales;f__JARGFW01;g__JARGFW01;s__ | 66.51 | 0.85 | 68.0 | 2,814 | 2,406,786 |
| MAG02924 | PJD3_bin.13 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__SZUA-152;f__SZUA-152;g__JAKEGK01;s__ | 81.89 | 1.49 | 46.0 | 5,656 | 2,479,330 |
| MAG02925 | PJD3_bin.14 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__CSP1-8;s__CSP1-8 sp035464915 | 93.97 | 0.84 | 62.0 | 14,322 | 2,071,708 |
| MAG02926 | PJD3_bin.15 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Thalassolituus;s__ | 99.99 | 0.32 | 47.0 | 81,370 | 3,798,450 |
| MAG02927 | PJD3_bin.16 | d__Bacteria;p__Bdellovibrionota;c__Bacteriovoracia;o__Bacteriovoracales;f__Bacteriovoracaceae;g__Halobacteriovorax_A;s__ | 99.82 | 0.87 | 33.0 | 97,745 | 3,487,772 |
| MAG02928 | PJD3_bin.18 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__UBA6490;s__ | 91.17 | 3.67 | 40.0 | 7,421 | 2,976,261 |
| MAG02929 | PJD3_bin.19 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__UBA6429;f__Thiohalophilaceae;g__JAGLTQ01;s__ | 88.3 | 4.17 | 42.0 | 11,055 | 2,385,238 |
| MAG02930 | PJD3_bin.2 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Quisquiliibacterium;s__ | 88.44 | 2.71 | 68.0 | 8,009 | 3,094,181 |
| MAG02931 | PJD3_bin.20 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__AKS1;f__AKS1;g__;s__ | 82.87 | 2.67 | 53.0 | 10,647 | 2,012,951 |
| MAG02932 | PJD3_bin.21 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Woeseiales;f__Woeseiaceae;g__UBA1847;s__UBA1847 sp041574375 | 79.4 | 0.89 | 57.0 | 17,281 | 2,993,350 |
| MAG02933 | PJD3_bin.23 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__ | 75.25 | 2.45 | 49.0 | 5,583 | 1,518,415 |
| MAG02934 | PJD3_bin.25 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466;s__ | 88.24 | 3.06 | 39.0 | 7,252 | 2,869,726 |
| MAG02935 | PJD3_bin.28 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAGXFR01;s__ | 94.83 | 2.4 | 67.0 | 11,675 | 2,442,606 |
| MAG02936 | PJD3_bin.29 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__RBG-16-64-13;f__RBG-16-64-13;g__JAHJSA01;s__ | 98.28 | 1.78 | 67.0 | 17,472 | 2,685,815 |
| MAG02937 | PJD3_bin.30 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__GCA-2748055;g__GCA-2748055;s__ | 87.87 | 1.93 | 49.0 | 7,912 | 4,210,109 |
| MAG02938 | PJD3_bin.33 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 83.23 | 3.48 | 49.0 | 9,839 | 3,420,138 |
| MAG02939 | PJD3_bin.35 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__JAHEDJ01;g__JAHEDJ01;s__JAHEDJ01 sp035471805 | 90.81 | 1.63 | 64.0 | 56,514 | 2,808,038 |
| MAG02940 | PJD3_bin.36 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JABDII01;s__JABDII01 sp035464955 | 70.26 | 2.01 | 65.0 | 6,309 | 2,400,360 |
| MAG02941 | PJD3_bin.37 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA11579;g__UBA11579;s__ | 90.71 | 2.84 | 57.0 | 38,010 | 3,347,049 |
| MAG02942 | PJD3_bin.42 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__JAHEDH01;s__ | 59.78 | 0.37 | 65.0 | 5,038 | 2,091,955 |
| MAG02943 | PJD3_bin.43 | d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfuricurvum;s__Sulfuricurvum kujiense_A | 67.43 | 1.93 | 44.0 | 6,244 | 1,539,130 |
| MAG02944 | PJD3_bin.45 | d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__BM004;g__BM004;s__ | 77.48 | 5.18 | 53.0 | 10,890 | 2,090,310 |
| MAG02945 | PJD3_bin.49 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__SG8-30;s__ | 89.1 | 2.5 | 71.0 | 29,963 | 2,519,798 |
| MAG02946 | PJD3_bin.5 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__SZUA-229;f__SZUA-229;g__;s__ | 55.52 | 0.8 | 47.0 | 4,227 | 1,206,572 |
| MAG02947 | PJD3_bin.50 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__JAABUE01;s__ | 90.22 | 3.02 | 50.0 | 10,401 | 3,578,369 |
| MAG02948 | PJD3_bin.6 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosomaritimum;s__ | 75.6 | 1.12 | 34.0 | 6,022 | 1,211,781 |
| MAG02949 | PJD3_bin.9 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__GWC2-65-14;s__ | 88.44 | 1.24 | 67.0 | 36,319 | 1,763,311 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |