GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0070 |
|---|---|
| Name | PJS1 |
| Type | marsh |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 40.923333 N 121.783611 E |
| Altitude (m) | 1.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-27 |
| Physicochemical properties | |
| TN (g/kg) | 0.6239 |
| TP (g/kg) | 0.3663 |
| TS (g/kg) | 0.3541 |
| TC (g/kg) | 5.5700 |
| Fe (mg/kg) | 20277.1619 |
| Mn (mg/kg) | 496.9008 |
| C/N | 8.9279 |
| IC (g/kg) | 2.6138 |
| MBC (g/kg) | 0.1400 |
| pH | 8.4100 |
| Water content (%) | 0.2296 |
| NO3- (mg/kg) | -6.4689 |
| NH4+ (mg/kg) | 2.3814 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs49
The MAGs in SMP0070
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG02950 | PJS1_bin.1 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__SG8-38;s__ | 91.44 | 2.09 | 63.0 | 13,458 | 3,669,058 |
| MAG02951 | PJS1_bin.14 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D;s__ | 98.33 | 1.51 | 55.0 | 33,468 | 3,331,626 |
| MAG02952 | PJS1_bin.19 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__RBG-16-64-13;f__RBG-16-64-13;g__JAHJSA01;s__ | 76.65 | 2.84 | 67.0 | 8,750 | 1,848,401 |
| MAG02953 | PJS1_bin.20 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__JAENVV01;g__GCA-020352575;s__ | 94.58 | 1.81 | 66.0 | 17,499 | 2,472,510 |
| MAG02954 | PJS1_bin.21 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thermohalobaculum;s__ | 85.65 | 1.71 | 65.0 | 23,104 | 3,255,944 |
| MAG02955 | PJS1_bin.22 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__DATHYZ01;s__DATHYZ01 sp035458865 | 90.8 | 1.23 | 73.0 | 21,454 | 2,801,546 |
| MAG02956 | PJS1_bin.24 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Eutrophocola;s__ | 64.44 | 2.69 | 61.0 | 3,747 | 2,342,763 |
| MAG02957 | PJS1_bin.26 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA11579;g__UBA11579;s__UBA11579 sp035458505 | 64.39 | 1.05 | 53.0 | 33,253 | 2,717,702 |
| MAG02958 | PJS1_bin.27 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__SZUA-152;f__SZUA-152;g__JAKEGK01;s__ | 71.17 | 2.68 | 46.0 | 8,064 | 2,369,431 |
| MAG02959 | PJS1_bin.28 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDJL01;s__ | 56.94 | 1.38 | 63.0 | 8,985 | 1,605,183 |
| MAG02960 | PJS1_bin.3 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Palauibacterales;f__Palauibacteraceae;g__JARFPW01;s__JARFPW01 sp035464655 | 92.23 | 0.03 | 69.0 | 36,348 | 2,541,324 |
| MAG02961 | PJS1_bin.30 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Zhongshania;s__ | 67.77 | 1.65 | 49.0 | 5,907 | 2,571,909 |
| MAG02962 | PJS1_bin.31 | d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__BM002;f__BM002;g__BM002;s__BM002 sp947259475 | 59.49 | 1.17 | 50.0 | 3,414 | 1,813,910 |
| MAG02963 | PJS1_bin.32 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__IDS-52;s__IDS-52 sp039586075 | 91.58 | 2.6 | 69.0 | 21,728 | 3,264,929 |
| MAG02964 | PJS1_bin.33 | d__Bacteria;p__Acidobacteriota;c__UBA890;o__UBA890;f__UBA890;g__;s__ | 71.89 | 0.0 | 66.0 | 16,596 | 4,260,293 |
| MAG02965 | PJS1_bin.34 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__QNFN01;f__QNFN01;g__QNFN01;s__ | 78.21 | 2.42 | 72.0 | 10,551 | 2,410,130 |
| MAG02966 | PJS1_bin.37 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__IDS-52;s__IDS-52 sp035464715 | 100.0 | 4.37 | 71.0 | 17,634 | 4,775,910 |
| MAG02967 | PJS1_bin.39 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__JARGPN01;s__ | 89.18 | 0.03 | 52.0 | 25,337 | 2,795,473 |
| MAG02968 | PJS1_bin.41 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Boseongicola;s__Boseongicola sp905479635 | 76.6 | 2.24 | 57.0 | 5,542 | 3,102,315 |
| MAG02969 | PJS1_bin.43 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__CALKKN01;s__ | 76.84 | 2.74 | 63.0 | 13,386 | 3,007,063 |
| MAG02970 | PJS1_bin.44 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Woeseiales;f__Woeseiaceae;g__JAXHMR01;s__ | 75.61 | 1.24 | 61.0 | 17,588 | 2,652,469 |
| MAG02971 | PJS1_bin.47 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__JAHEDH01;s__ | 95.32 | 1.38 | 65.0 | 73,016 | 3,587,216 |
| MAG02972 | PJS1_bin.48 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thermohalobaculum;s__ | 91.37 | 0.86 | 71.0 | 13,837 | 3,191,097 |
| MAG02973 | PJS1_bin.49 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__JACCXV01;f__JAHWKZ01;g__CAMYLR01;s__ | 72.8 | 2.94 | 63.0 | 4,111 | 2,086,331 |
| MAG02974 | PJS1_bin.5 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__DATKCF01;s__ | 65.4 | 1.5 | 67.0 | 10,141 | 2,989,401 |
| MAG02975 | PJS1_bin.50 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Thalassolituus;s__ | 64.89 | 2.77 | 47.0 | 5,743 | 2,388,940 |
| MAG02976 | PJS1_bin.53 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Woeseiales;f__Woeseiaceae;g__JAACFE01;s__JAACFE01 sp041562415 | 83.32 | 2.0 | 61.0 | 4,077 | 2,545,108 |
| MAG02977 | PJS1_bin.54 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233;s__ | 97.4 | 0.97 | 72.0 | 14,423 | 2,778,075 |
| MAG02978 | PJS1_bin.55 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Rariloculales;f__Rariloculaceae;g__JAHEEM01;s__ | 84.02 | 2.24 | 60.0 | 10,711 | 2,617,883 |
| MAG02979 | PJS1_bin.57 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Rariloculales;f__Rariloculaceae;g__DATCZB01;s__ | 88.04 | 1.66 | 61.0 | 11,887 | 2,776,785 |
| MAG02980 | PJS1_bin.6 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__CSP1-8;s__CSP1-8 sp035464915 | 99.17 | 6.07 | 62.0 | 10,223 | 2,579,178 |
| MAG02981 | PJS1_bin.60 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Multivoradales;f__JAHEKO01;g__JAOTUP01;s__ | 59.93 | 1.33 | 61.0 | 5,955 | 2,310,427 |
| MAG02982 | PJS1_bin.64 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__JAHEDJ01;g__JAHEDJ01;s__JAHEDJ01 sp035471805 | 88.92 | 0.1 | 64.0 | 51,474 | 2,527,641 |
| MAG02983 | PJS1_bin.65 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JABDII01;s__JABDII01 sp035464955 | 91.96 | 0.0 | 65.0 | 41,601 | 3,249,206 |
| MAG02984 | PJS1_bin.66 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JAWVYT01;s__ | 72.77 | 3.45 | 72.0 | 11,669 | 3,233,053 |
| MAG02985 | PJS1_bin.67 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAGXFR01;s__ | 90.88 | 0.23 | 67.0 | 15,544 | 2,362,032 |
| MAG02986 | PJS1_bin.69 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Kiloniellales;f__CECT-8803;g__JARRJC01;s__JARRJC01 sp037379885 | 96.62 | 0.09 | 66.0 | 21,855 | 2,779,570 |
| MAG02987 | PJS1_bin.71 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__DATHRK01;s__DATHRK01 sp035465395 | 78.73 | 0.12 | 72.0 | 17,561 | 2,928,993 |
| MAG02988 | PJS1_bin.75 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Quisquiliibacterium;s__ | 61.71 | 0.36 | 69.0 | 8,831 | 2,162,156 |
| MAG02989 | PJS1_bin.76 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__DJVA01;s__ | 73.79 | 1.19 | 42.0 | 4,681 | 2,045,187 |
| MAG02990 | PJS1_bin.77 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__JAHEDJ01;g__;s__ | 95.44 | 3.66 | 61.0 | 24,185 | 3,586,614 |
| MAG02991 | PJS1_bin.78 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__;s__ | 87.69 | 4.09 | 67.0 | 9,770 | 4,066,760 |
| MAG02992 | PJS1_bin.79 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__JAABUE01;s__ | 89.42 | 4.98 | 49.0 | 10,049 | 3,830,969 |
| MAG02993 | PJS1_bin.8 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella;s__ | 92.18 | 2.28 | 61.0 | 28,823 | 2,078,389 |
| MAG02994 | PJS1_bin.83 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA11579;g__UBA11579;s__ | 89.66 | 0.53 | 57.0 | 42,794 | 3,338,801 |
| MAG02995 | PJS1_bin.84 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Zhongshania;s__ | 96.24 | 0.07 | 51.0 | 119,765 | 3,306,827 |
| MAG02996 | PJS1_bin.85 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__JARGPN01;s__ | 99.92 | 0.04 | 52.0 | 77,964 | 3,417,949 |
| MAG02997 | PJS1_bin.87 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__S012-47;g__;s__ | 66.5 | 2.68 | 52.0 | 2,712 | 1,901,575 |
| MAG02998 | PJS1_bin.9 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sneathiellales;f__Sneathiellaceae;g__Sneathiella;s__ | 79.24 | 1.26 | 57.0 | 7,001 | 2,901,766 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |