GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0077 |
|---|---|
| Name | QTD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 28.0325 N 120.255833 E |
| Altitude (m) | 327.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-03-25 |
| Physicochemical properties | |
| TN (g/kg) | 2.1073 |
| TP (g/kg) | 0.5056 |
| TS (g/kg) | 0.2051 |
| TC (g/kg) | 23.6200 |
| Fe (mg/kg) | 23717.2414 |
| Mn (mg/kg) | 1396.5517 |
| C/N | 11.2088 |
| IC (g/kg) | 2.1379 |
| MBC (g/kg) | 0.5051 |
| pH | 6.9500 |
| Water content (%) | 0.3659 |
| NO3- (mg/kg) | -0.6335 |
| NH4+ (mg/kg) | 10.1892 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs12
The MAGs in SMP0077
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03260 | QTD2_bin.1 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__ATCC43930;f__CGMCC-115725;g__DASZHJ01;s__ | 72.1 | 0.95 | 68.0 | 9,433 | 2,959,543 |
| MAG03261 | QTD2_bin.12 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__DASPUC01;s__ | 92.85 | 2.96 | 57.0 | 10,979 | 2,336,614 |
| MAG03262 | QTD2_bin.14 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__CAMLFJ01;s__CAMLFJ01 sp035254745 | 85.25 | 6.82 | 71.0 | 12,238 | 4,959,621 |
| MAG03263 | QTD2_bin.15 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 81.54 | 1.93 | 69.0 | 11,368 | 2,913,366 |
| MAG03264 | QTD2_bin.16 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__ATCC43930;f__CGMCC-115725;g__URHD0088;s__ | 69.87 | 3.53 | 68.0 | 8,194 | 4,012,547 |
| MAG03265 | QTD2_bin.17 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__UBA184;f__UBA184;g__UBA184;s__ | 74.12 | 0.29 | 68.0 | 8,321 | 1,820,382 |
| MAG03266 | QTD2_bin.19 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Acidiferrales;f__UBA7541;g__Acidiferrum;s__ | 87.0 | 6.82 | 58.0 | 7,192 | 4,037,969 |
| MAG03267 | QTD2_bin.2 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Micropepsales;f__Micropepsaceae;g__Rhizomicrobium;s__ | 81.99 | 2.75 | 61.0 | 12,960 | 2,478,337 |
| MAG03268 | QTD2_bin.20 | d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__UBA9160;g__UBA9160;s__ | 77.3 | 0.95 | 66.0 | 8,101 | 3,232,340 |
| MAG03269 | QTD2_bin.3 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__;s__ | 78.49 | 1.47 | 69.0 | 8,021 | 4,037,937 |
| MAG03270 | QTD2_bin.4 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__TH1-2;g__Vitreimonas;s__ | 59.68 | 0.75 | 64.0 | 3,115 | 2,067,245 |
| MAG03271 | QTD2_bin.7 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__JAICXU01;s__ | 81.5 | 3.82 | 64.0 | 3,457 | 4,220,773 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |