GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0078 |
|---|---|
| Name | QTD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 28.0325 N 120.255833 E |
| Altitude (m) | 327.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-03-25 |
| Physicochemical properties | |
| TN (g/kg) | 2.1423 |
| TP (g/kg) | 0.5544 |
| TS (g/kg) | 0.1376 |
| TC (g/kg) | 23.0100 |
| Fe (mg/kg) | 20500.9980 |
| Mn (mg/kg) | 1273.4531 |
| C/N | 10.7409 |
| IC (g/kg) | 0.2653 |
| MBC (g/kg) | 0.5665 |
| pH | 7.0300 |
| Water content (%) | 0.4000 |
| NO3- (mg/kg) | -1.0060 |
| NH4+ (mg/kg) | 7.1378 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs13
The MAGs in SMP0078
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03272 | QTD3_bin.1 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys;s__Pseudolabrys sp027307405 | 80.3 | 2.77 | 59.0 | 19,646 | 3,170,395 |
| MAG03273 | QTD3_bin.11 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAEUPI01;s__ | 86.17 | 1.53 | 69.0 | 15,463 | 4,470,894 |
| MAG03274 | QTD3_bin.12 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__TH1-2;g__Vitreimonas;s__ | 70.84 | 2.51 | 64.0 | 4,261 | 2,236,152 |
| MAG03275 | QTD3_bin.13 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__ATCC43930;f__CGMCC-115725;g__DASZHJ01;s__ | 86.32 | 3.28 | 68.0 | 8,628 | 3,850,051 |
| MAG03276 | QTD3_bin.15 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__RPRB01;s__ | 80.81 | 3.51 | 72.0 | 12,637 | 4,462,467 |
| MAG03277 | QTD3_bin.16 | d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174_A;g__SpSt-501;s__ | 78.19 | 4.06 | 62.0 | 7,199 | 3,302,598 |
| MAG03278 | QTD3_bin.17 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA45;s__ | 83.97 | 5.95 | 64.0 | 13,337 | 4,000,019 |
| MAG03279 | QTD3_bin.19 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__Dissulfurispiraceae;g__;s__ | 82.61 | 1.78 | 55.0 | 6,651 | 2,158,208 |
| MAG03280 | QTD3_bin.20 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__DASPUC01;s__ | 88.02 | 5.18 | 56.0 | 12,148 | 2,384,922 |
| MAG03281 | QTD3_bin.21 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__UBA8199;g__;s__ | 72.4 | 2.09 | 56.0 | 6,759 | 4,335,083 |
| MAG03282 | QTD3_bin.22 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASTHG01;s__ | 81.31 | 1.63 | 68.0 | 6,139 | 2,897,792 |
| MAG03283 | QTD3_bin.6 | d__Bacteria;p__Myxococcota_A;c__UBA9160;o__SZUA-336;f__SZUA-336;g__VGRW01;s__ | 82.1 | 5.75 | 70.0 | 3,301 | 3,454,462 |
| MAG03284 | QTD3_bin.8 | d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__Fen-1135;s__ | 83.51 | 5.21 | 49.0 | 6,214 | 2,054,422 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |