GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0079 |
|---|---|
| Name | REGS1 |
| Type | marsh |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 33.112 N 102.6116 E |
| Altitude (m) | 3474.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-08-06 |
| Physicochemical properties | |
| TN (g/kg) | 2.4184 |
| TP (g/kg) | 0.8236 |
| TS (g/kg) | 0.4608 |
| TC (g/kg) | 26.6200 |
| Fe (mg/kg) | 50041.9287 |
| Mn (mg/kg) | 442.3480 |
| C/N | 11.0073 |
| IC (g/kg) | 2.7469 |
| MBC (g/kg) | 0.1818 |
| pH | 6.6500 |
| Water content (%) | 0.3571 |
| NO3- (mg/kg) | |
| NH4+ (mg/kg) | 6.9136 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs38
The MAGs in SMP0079
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03285 | REGS1_bin.1 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Fen-1038;s__ | 89.48 | 3.64 | 59.0 | 9,449 | 3,236,027 |
| MAG03286 | REGS1_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__;s__ | 57.23 | 0.45 | 56.0 | 5,941 | 1,412,668 |
| MAG03287 | REGS1_bin.11 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__Binatales;f__Binataceae;g__Binatus;s__ | 63.8 | 0.22 | 62.0 | 3,187 | 2,007,294 |
| MAG03288 | REGS1_bin.12 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__DATDNV01;s__ | 85.22 | 0.38 | 65.0 | 25,650 | 3,538,439 |
| MAG03289 | REGS1_bin.14 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__;s__ | 64.82 | 2.68 | 73.0 | 4,015 | 2,264,055 |
| MAG03290 | REGS1_bin.15 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA4142;f__UBA4142;g__DAIDTM01;s__ | 79.17 | 4.94 | 60.0 | 12,709 | 2,915,700 |
| MAG03291 | REGS1_bin.19 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__2-12-FULL-66-21;g__;s__ | 95.69 | 0.32 | 66.0 | 10,780 | 3,628,977 |
| MAG03292 | REGS1_bin.20 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA6898;g__Sulfobium;s__ | 77.5 | 3.24 | 52.0 | 5,915 | 2,301,053 |
| MAG03293 | REGS1_bin.22 | d__Bacteria;p__Omnitrophota;c__Koll11;o__Gygaellales;f__Profunditerraquicolaceae;g__JAHKAP01;s__ | 83.92 | 3.49 | 41.0 | 6,296 | 1,444,067 |
| MAG03294 | REGS1_bin.24 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Methylomirabilales;f__Methylomirabilaceae;g__Methylomirabilis;s__ | 91.57 | 1.22 | 61.0 | 17,695 | 2,367,201 |
| MAG03295 | REGS1_bin.25 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxyarcus;s__ | 74.18 | 0.36 | 56.0 | 9,847 | 2,170,819 |
| MAG03296 | REGS1_bin.27 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA4142;f__SHND01;g__;s__ | 82.23 | 5.06 | 56.0 | 6,524 | 2,832,022 |
| MAG03297 | REGS1_bin.28 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__JAJYJO01;s__ | 72.01 | 2.12 | 72.0 | 4,398 | 1,637,068 |
| MAG03298 | REGS1_bin.30 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__DATIVK01;s__ | 79.77 | 2.8 | 72.0 | 10,221 | 3,768,063 |
| MAG03299 | REGS1_bin.31 | d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__VAUL01;s__ | 93.97 | 0.0 | 62.0 | 37,046 | 2,427,588 |
| MAG03300 | REGS1_bin.32 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Acidiferrales;f__UBA7541;g__Acidiferrum;s__ | 61.93 | 1.93 | 58.0 | 6,348 | 2,731,025 |
| MAG03301 | REGS1_bin.34 | d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Thermoguttaceae;g__CALFBP01;s__ | 86.28 | 3.41 | 65.0 | 7,803 | 5,915,154 |
| MAG03302 | REGS1_bin.37 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAHFUA01;g__DASYTX01;s__ | 99.92 | 1.26 | 66.0 | 20,785 | 2,617,650 |
| MAG03303 | REGS1_bin.38 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA10030;g__;s__ | 98.7 | 0.5 | 53.0 | 54,051 | 3,334,636 |
| MAG03304 | REGS1_bin.39 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA6663;g__;s__ | 80.86 | 3.31 | 65.0 | 4,281 | 3,491,955 |
| MAG03305 | REGS1_bin.4 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__40CM-4-65-16;s__ | 78.05 | 1.72 | 67.0 | 12,658 | 1,982,584 |
| MAG03306 | REGS1_bin.40 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__JAHECP01;g__JAHECP01;s__ | 72.54 | 0.23 | 70.0 | 18,481 | 2,648,153 |
| MAG03307 | REGS1_bin.41 | d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__DSM-12255;g__VEOV01;s__ | 77.58 | 3.2 | 55.0 | 24,595 | 3,274,945 |
| MAG03308 | REGS1_bin.42 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DATLWA01;s__DATLWA01 sp041487875 | 94.32 | 1.59 | 69.0 | 20,996 | 2,697,976 |
| MAG03309 | REGS1_bin.45 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR19;s__ | 85.88 | 6.2 | 71.0 | 44,099 | 4,016,780 |
| MAG03310 | REGS1_bin.46 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__UBA11740;s__ | 71.12 | 3.92 | 56.0 | 6,536 | 3,089,975 |
| MAG03311 | REGS1_bin.47 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__DATDDB01;s__ | 94.77 | 0.37 | 58.0 | 19,080 | 2,400,004 |
| MAG03312 | REGS1_bin.48 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__;s__ | 82.57 | 0.83 | 68.0 | 27,535 | 2,866,309 |
| MAG03313 | REGS1_bin.5 | d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Anaerosomatales;f__PALSA-660;g__JANYAK01;s__ | 95.06 | 0.85 | 69.0 | 44,621 | 1,947,998 |
| MAG03314 | REGS1_bin.50 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__;s__ | 79.84 | 4.51 | 67.0 | 19,111 | 6,426,035 |
| MAG03315 | REGS1_bin.51 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__;s__ | 78.15 | 0.69 | 69.0 | 29,585 | 3,141,270 |
| MAG03316 | REGS1_bin.52 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__WQYP01;f__WQYP01;g__WQYP01;s__ | 78.92 | 2.38 | 64.0 | 16,741 | 4,023,010 |
| MAG03317 | REGS1_bin.53 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__;s__ | 57.69 | 0.24 | 68.0 | 3,225 | 1,483,632 |
| MAG03318 | REGS1_bin.54 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__;s__ | 89.88 | 5.8 | 55.0 | 7,422 | 3,909,474 |
| MAG03319 | REGS1_bin.58 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAIQGF01;g__JAIQGF01;s__ | 79.13 | 4.5 | 63.0 | 11,243 | 2,732,713 |
| MAG03320 | REGS1_bin.7 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__RBG-16-66-20;s__ | 84.74 | 3.61 | 67.0 | 7,472 | 2,620,665 |
| MAG03321 | REGS1_bin.8 | d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum;s__ | 73.99 | 0.61 | 40.0 | 4,305 | 1,793,934 |
| MAG03322 | REGS1_bin.9 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-32;s__ | 58.22 | 1.13 | 71.0 | 8,940 | 1,241,871 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |