GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0083 |
|---|---|
| Name | SHD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 43.4256 N 128.4256 E |
| Altitude (m) | 517.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-15 |
| Physicochemical properties | |
| TN (g/kg) | 1.9639 |
| TP (g/kg) | 0.4674 |
| TS (g/kg) | 0.4651 |
| TC (g/kg) | 27.0000 |
| Fe (mg/kg) | 25635.2941 |
| Mn (mg/kg) | 362.7451 |
| C/N | 13.7479 |
| IC (g/kg) | 5.1107 |
| MBC (g/kg) | 0.2399 |
| pH | 5.7400 |
| Water content (%) | 0.3425 |
| NO3- (mg/kg) | 0.3104 |
| NH4+ (mg/kg) | 14.1622 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs15
The MAGs in SMP0083
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03370 | SHD2_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__;s__ | 73.62 | 1.95 | 59.0 | 8,554 | 2,103,387 |
| MAG03371 | SHD2_bin.11 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Korobacteraceae;g__DASPLH01;s__ | 84.04 | 2.94 | 57.0 | 45,861 | 3,241,290 |
| MAG03372 | SHD2_bin.12 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__DATFVA01;s__ | 88.88 | 0.25 | 36.0 | 39,207 | 3,193,294 |
| MAG03373 | SHD2_bin.13 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA6898;g__Sulfobium;s__ | 94.28 | 7.37 | 51.0 | 12,314 | 2,610,160 |
| MAG03374 | SHD2_bin.14 | d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2192;g__UBA2192;s__ | 96.87 | 5.52 | 60.0 | 16,840 | 3,028,583 |
| MAG03375 | SHD2_bin.18 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Micropepsales;f__Micropepsaceae;g__Rhizomicrobium;s__ | 97.95 | 0.03 | 61.0 | 72,071 | 3,411,056 |
| MAG03376 | SHD2_bin.20 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__JABDJR01;f__JAWXBZ01;g__;s__ | 80.03 | 2.77 | 67.0 | 4,139 | 2,867,549 |
| MAG03377 | SHD2_bin.23 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__JAGVPR01;f__JAGVPR01;g__JAGVPR01;s__ | 67.68 | 0.64 | 66.0 | 7,333 | 2,888,460 |
| MAG03378 | SHD2_bin.24 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__RBG-16-66-30;g__RBG-16-66-30;s__ | 80.21 | 3.07 | 67.0 | 11,566 | 2,665,382 |
| MAG03379 | SHD2_bin.27 | d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanospirillaceae;g__UBA288;s__ | 57.25 | 0.28 | 69.0 | 4,277 | 1,454,865 |
| MAG03380 | SHD2_bin.3 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__CAIMUX01;f__VGJL01;g__JAXDAY01;s__ | 94.46 | 5.26 | 68.0 | 16,828 | 3,887,569 |
| MAG03381 | SHD2_bin.4 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JAGGAG01;s__ | 71.88 | 1.75 | 71.0 | 9,116 | 2,301,759 |
| MAG03382 | SHD2_bin.7 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 57.78 | 1.51 | 53.0 | 7,709 | 3,361,312 |
| MAG03383 | SHD2_bin.8 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__UBA5066;g__DAOMFB01;s__ | 81.22 | 0.32 | 70.0 | 19,509 | 2,916,924 |
| MAG03384 | SHD2_bin.9 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720;s__ | 83.17 | 3.28 | 59.0 | 9,473 | 3,058,178 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |