GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0086 |
|---|---|
| Name | SJTD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 41.615 N 123.2827 E |
| Altitude (m) | 34.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-29 |
| Physicochemical properties | |
| TN (g/kg) | 1.9337 |
| TP (g/kg) | 0.7396 |
| TS (g/kg) | 0.6095 |
| TC (g/kg) | 20.8700 |
| Fe (mg/kg) | |
| Mn (mg/kg) | |
| C/N | 10.7925 |
| IC (g/kg) | 0.4086 |
| MBC (g/kg) | 0.2833 |
| pH | 6.2500 |
| Water content (%) | 0.3899 |
| NO3- (mg/kg) | 16.1506 |
| NH4+ (mg/kg) | 5.1025 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs49
The MAGs in SMP0086
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03432 | SJTD2_bin.1 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__CF-46;s__ | 90.74 | 3.06 | 73.0 | 40,802 | 3,658,067 |
| MAG03433 | SJTD2_bin.12 | d__Archaea;p__Thermoproteota;c__Bathyarchaeia;o__Bathyarchaeales;f__Bathycorpusculaceae;g__UBA11855;s__UBA11855 sp035297385 | 86.41 | 5.32 | 40.0 | 6,784 | 2,035,141 |
| MAG03434 | SJTD2_bin.13 | d__Bacteria;p__Patescibacteriota;c__Microgenomatia;o__UBA10105;f__UBA927;g__DATKGN01;s__ | 88.66 | 0.98 | 50.0 | 54,209 | 1,386,083 |
| MAG03435 | SJTD2_bin.15 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus;s__Pedococcus sp036278335 | 84.18 | 0.9 | 72.0 | 9,894 | 3,148,649 |
| MAG03436 | SJTD2_bin.19 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__JADGNW01;s__ | 98.44 | 2.32 | 56.0 | 58,058 | 6,347,595 |
| MAG03437 | SJTD2_bin.2 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__ | 100.0 | 0.57 | 68.0 | 81,010 | 4,055,400 |
| MAG03438 | SJTD2_bin.20 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__CAWULT01;s__ | 80.98 | 1.1 | 68.0 | 23,538 | 5,477,459 |
| MAG03439 | SJTD2_bin.21 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__DATKLQ01;s__ | 78.18 | 1.46 | 39.0 | 6,466 | 3,611,572 |
| MAG03440 | SJTD2_bin.24 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A;s__ | 95.9 | 3.67 | 58.0 | 17,410 | 3,538,762 |
| MAG03441 | SJTD2_bin.26 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__PALSA-1003;s__ | 91.89 | 2.61 | 65.0 | 60,640 | 4,693,590 |
| MAG03442 | SJTD2_bin.27 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__SbA1;g__DATAPD01;s__ | 94.91 | 4.49 | 57.0 | 20,226 | 4,120,524 |
| MAG03443 | SJTD2_bin.29 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 86.61 | 2.24 | 64.0 | 18,380 | 2,075,267 |
| MAG03444 | SJTD2_bin.3 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAKOUY01;s__ | 94.28 | 0.58 | 71.0 | 34,712 | 3,486,994 |
| MAG03445 | SJTD2_bin.30 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAJKIV01;s__ | 90.46 | 3.29 | 67.0 | 28,430 | 7,002,898 |
| MAG03446 | SJTD2_bin.31 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__OLB17;s__ | 79.97 | 0.06 | 54.0 | 8,543 | 2,707,596 |
| MAG03447 | SJTD2_bin.32 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 89.24 | 5.6 | 65.0 | 41,996 | 6,299,803 |
| MAG03448 | SJTD2_bin.33 | d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__QHBQ01;f__JADMIH01;g__JADMIH01;s__ | 61.57 | 1.02 | 64.0 | 5,759 | 3,324,940 |
| MAG03449 | SJTD2_bin.34 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 80.35 | 2.33 | 52.0 | 7,238 | 3,786,374 |
| MAG03450 | SJTD2_bin.36 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__DATIGO01;s__ | 87.82 | 0.31 | 64.0 | 41,762 | 4,441,883 |
| MAG03451 | SJTD2_bin.38 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAENVT01;s__ | 93.79 | 1.39 | 64.0 | 37,029 | 4,189,775 |
| MAG03452 | SJTD2_bin.40 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__DASQBT01;s__ | 74.29 | 1.94 | 60.0 | 6,501 | 1,734,223 |
| MAG03453 | SJTD2_bin.41 | d__Bacteria;p__Nitrospirota;c__UBA9217;o__UBA9217;f__UBA9217;g__JALNZF01;s__ | 97.88 | 2.05 | 54.0 | 47,204 | 3,321,753 |
| MAG03454 | SJTD2_bin.45 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA4142;f__UBA4142;g__JACQYF01;s__ | 91.55 | 3.67 | 58.0 | 13,930 | 4,615,337 |
| MAG03455 | SJTD2_bin.46 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__DATFVA01;s__ | 64.0 | 2.15 | 36.0 | 3,979 | 2,415,102 |
| MAG03456 | SJTD2_bin.47 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__Deferrimicrobium;s__ | 64.28 | 0.84 | 67.0 | 7,599 | 1,393,866 |
| MAG03457 | SJTD2_bin.48 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 59.13 | 1.76 | 62.0 | 5,651 | 1,557,171 |
| MAG03458 | SJTD2_bin.49 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 98.46 | 9.59 | 54.0 | 19,894 | 4,520,861 |
| MAG03459 | SJTD2_bin.5 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__JABDJR01;f__JABDJR01;g__;s__ | 70.97 | 2.52 | 64.0 | 3,725 | 2,471,723 |
| MAG03460 | SJTD2_bin.51 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__Sphingomicrobium sediminicola_A | 59.11 | 0.08 | 63.0 | 6,496 | 1,135,088 |
| MAG03461 | SJTD2_bin.52 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira;s__ | 74.19 | 1.43 | 54.0 | 9,582 | 1,741,989 |
| MAG03462 | SJTD2_bin.53 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__UBA11740;s__ | 93.64 | 1.15 | 56.0 | 31,266 | 4,064,141 |
| MAG03463 | SJTD2_bin.54 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Fen-1058;f__Fen-1058;g__Fen-1058;s__ | 67.45 | 0.94 | 59.0 | 4,258 | 3,457,024 |
| MAG03464 | SJTD2_bin.55 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Fen-1038;s__ | 73.7 | 4.65 | 63.0 | 6,272 | 2,689,307 |
| MAG03465 | SJTD2_bin.56 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__CAIWHR01;s__ | 78.26 | 2.63 | 70.0 | 15,092 | 3,179,138 |
| MAG03466 | SJTD2_bin.57 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__CAIWHR01;s__ | 87.7 | 7.03 | 64.0 | 13,317 | 4,362,188 |
| MAG03467 | SJTD2_bin.58 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01;s__ | 95.1 | 0.71 | 71.0 | 48,502 | 3,875,468 |
| MAG03468 | SJTD2_bin.60 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 84.65 | 1.82 | 64.0 | 14,975 | 2,029,594 |
| MAG03469 | SJTD2_bin.62 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__;s__ | 100.0 | 8.42 | 63.0 | 51,788 | 6,452,460 |
| MAG03470 | SJTD2_bin.63 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Chthoniobacterales;f__UBA10450;g__Palsa-1392;s__ | 61.33 | 1.74 | 61.0 | 4,487 | 2,161,890 |
| MAG03471 | SJTD2_bin.64 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__DASVHS01;s__ | 82.45 | 2.59 | 64.0 | 10,996 | 3,412,584 |
| MAG03472 | SJTD2_bin.65 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys;s__ | 79.1 | 3.27 | 65.0 | 6,377 | 2,307,911 |
| MAG03473 | SJTD2_bin.66 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Chthoniobacterales;f__UBA10450;g__Udaeobacter;s__ | 92.73 | 2.99 | 55.0 | 9,917 | 2,587,753 |
| MAG03474 | SJTD2_bin.67 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 95.93 | 7.21 | 51.0 | 10,272 | 6,868,731 |
| MAG03475 | SJTD2_bin.68 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__DASVHS01;s__ | 91.42 | 3.42 | 65.0 | 40,084 | 4,410,396 |
| MAG03476 | SJTD2_bin.69 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__;s__ | 99.32 | 2.24 | 63.0 | 30,180 | 4,288,756 |
| MAG03477 | SJTD2_bin.7 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA4142;f__UBA4142;g__JACQYF01;s__ | 86.07 | 4.42 | 57.0 | 11,680 | 4,648,206 |
| MAG03478 | SJTD2_bin.72 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Tepidisphaerales;f__Tepidisphaeraceae;g__JAPLNB01;s__ | 53.25 | 0.26 | 63.0 | 4,399 | 2,728,960 |
| MAG03479 | SJTD2_bin.8 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__VBCG01 sp035696805 | 65.64 | 0.6 | 67.0 | 14,803 | 2,106,185 |
| MAG03480 | SJTD2_bin.9 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__Gp7-AA6;s__ | 93.6 | 5.73 | 67.0 | 22,687 | 3,605,389 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |