GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0087 |
|---|---|
| Name | SJTD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 41.615 N 123.2827 E |
| Altitude (m) | 34.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-29 |
| Physicochemical properties | |
| TN (g/kg) | 1.4685 |
| TP (g/kg) | 0.7947 |
| TS (g/kg) | 0.4882 |
| TC (g/kg) | 18.8300 |
| Fe (mg/kg) | |
| Mn (mg/kg) | |
| C/N | 12.8227 |
| IC (g/kg) | 3.9691 |
| MBC (g/kg) | 0.2425 |
| pH | 6.3700 |
| Water content (%) | 0.2530 |
| NO3- (mg/kg) | 41.1582 |
| NH4+ (mg/kg) | 5.2142 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs54
The MAGs in SMP0087
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03481 | SJTD3_bin.1 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 98.06 | 2.9 | 65.0 | 39,439 | 6,827,613 |
| MAG03482 | SJTD3_bin.10 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 65.3 | 2.77 | 66.0 | 16,168 | 1,412,431 |
| MAG03483 | SJTD3_bin.11 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__JAWOLE01;s__ | 67.05 | 1.78 | 68.0 | 13,991 | 2,958,102 |
| MAG03484 | SJTD3_bin.13 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__CF-46;s__ | 83.23 | 1.23 | 73.0 | 35,525 | 3,537,271 |
| MAG03485 | SJTD3_bin.18 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A;s__ | 92.71 | 3.11 | 58.0 | 19,988 | 3,292,391 |
| MAG03486 | SJTD3_bin.19 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__JBFMDH01;s__ | 87.66 | 0.07 | 52.0 | 8,245 | 5,917,877 |
| MAG03487 | SJTD3_bin.2 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__39-52-133;s__ | 85.87 | 1.1 | 61.0 | 11,856 | 2,614,962 |
| MAG03488 | SJTD3_bin.20 | d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__DSTF01;f__WHTK01;g__DATLYJ01;s__ | 75.56 | 2.09 | 68.0 | 5,994 | 2,156,189 |
| MAG03489 | SJTD3_bin.21 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__JACRMK01;f__JACRMK01;g__JBBPZQ01;s__ | 79.32 | 3.6 | 62.0 | 5,452 | 3,952,639 |
| MAG03490 | SJTD3_bin.22 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__JADGNW01;s__ | 98.27 | 1.2 | 56.0 | 56,267 | 6,233,022 |
| MAG03491 | SJTD3_bin.23 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosotenuis;s__ | 81.28 | 0.68 | 42.0 | 7,251 | 1,239,584 |
| MAG03492 | SJTD3_bin.24 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Fen-1038;s__ | 68.82 | 3.36 | 62.0 | 7,259 | 2,540,650 |
| MAG03493 | SJTD3_bin.26 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__;s__ | 66.68 | 0.71 | 67.0 | 20,203 | 2,920,713 |
| MAG03494 | SJTD3_bin.27 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__OLB17;s__ | 84.36 | 0.11 | 53.0 | 7,353 | 3,063,934 |
| MAG03495 | SJTD3_bin.28 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__JACPVF01;s__ | 68.47 | 0.57 | 59.0 | 10,723 | 2,637,702 |
| MAG03496 | SJTD3_bin.29 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__UBA5066;g__Fen-183;s__Fen-183 sp035310685 | 82.01 | 2.84 | 68.0 | 27,508 | 3,625,060 |
| MAG03497 | SJTD3_bin.3 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 87.39 | 4.46 | 52.0 | 9,499 | 5,554,286 |
| MAG03498 | SJTD3_bin.31 | d__Archaea;p__Thermoproteota;c__Bathyarchaeia;o__Bathyarchaeales;f__Bathycorpusculaceae;g__UBA11855;s__UBA11855 sp035297385 | 66.35 | 0.79 | 40.0 | 4,451 | 1,059,241 |
| MAG03499 | SJTD3_bin.33 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAJKIV01;s__ | 88.16 | 4.99 | 67.0 | 26,185 | 7,131,224 |
| MAG03500 | SJTD3_bin.35 | d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__QHBQ01;f__JADMIH01;g__JADMIH01;s__ | 66.33 | 1.9 | 64.0 | 5,086 | 3,785,455 |
| MAG03501 | SJTD3_bin.36 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__CAIJPD01;s__ | 57.63 | 0.42 | 72.0 | 11,003 | 1,955,161 |
| MAG03502 | SJTD3_bin.37 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__;s__ | 84.21 | 3.63 | 68.0 | 25,603 | 5,443,907 |
| MAG03503 | SJTD3_bin.4 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Chthoniobacterales;f__UBA10450;g__Udaeobacter;s__ | 84.58 | 4.62 | 55.0 | 9,145 | 2,373,768 |
| MAG03504 | SJTD3_bin.40 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__Gp7-AA6;s__ | 81.27 | 5.87 | 67.0 | 25,772 | 3,615,953 |
| MAG03505 | SJTD3_bin.42 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAENVT01;s__ | 92.4 | 3.44 | 64.0 | 36,782 | 4,359,675 |
| MAG03506 | SJTD3_bin.43 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__;s__ | 91.23 | 1.46 | 70.0 | 34,629 | 4,076,111 |
| MAG03507 | SJTD3_bin.44 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__ | 99.14 | 1.16 | 68.0 | 78,909 | 4,161,493 |
| MAG03508 | SJTD3_bin.45 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__UBA5066;g__Fen-183;s__ | 77.62 | 0.09 | 68.0 | 13,924 | 3,095,444 |
| MAG03509 | SJTD3_bin.46 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__DASSSG01;s__ | 67.12 | 2.25 | 63.0 | 4,767 | 4,495,018 |
| MAG03510 | SJTD3_bin.47 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__SbA1;g__DATAPD01;s__ | 100.0 | 3.42 | 57.0 | 20,385 | 4,356,533 |
| MAG03511 | SJTD3_bin.48 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAENVT01;s__ | 95.46 | 2.16 | 67.0 | 89,462 | 4,147,366 |
| MAG03512 | SJTD3_bin.49 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__DASQBT01;s__ | 61.3 | 0.03 | 60.0 | 5,927 | 1,596,747 |
| MAG03513 | SJTD3_bin.5 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__UBA11740;s__ | 96.28 | 3.32 | 56.0 | 23,656 | 4,490,163 |
| MAG03514 | SJTD3_bin.50 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__;s__ | 85.26 | 5.24 | 67.0 | 22,417 | 4,573,695 |
| MAG03515 | SJTD3_bin.51 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR5;s__ | 92.06 | 8.18 | 71.0 | 33,194 | 5,781,167 |
| MAG03516 | SJTD3_bin.54 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Chthoniobacterales;f__UBA10450;g__Palsa-1392;s__ | 71.79 | 0.26 | 61.0 | 7,935 | 2,680,970 |
| MAG03517 | SJTD3_bin.55 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__DASRWT01;s__ | 92.83 | 5.94 | 70.0 | 69,314 | 4,904,491 |
| MAG03518 | SJTD3_bin.56 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__DASYSL01;g__JANPEF01;s__ | 77.85 | 0.15 | 71.0 | 46,418 | 3,037,320 |
| MAG03519 | SJTD3_bin.57 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__JACPZX01;f__DASXTC01;g__DASXTC01;s__ | 90.45 | 2.51 | 66.0 | 13,162 | 3,451,020 |
| MAG03520 | SJTD3_bin.61 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01;s__ | 86.55 | 1.34 | 72.0 | 35,298 | 3,199,223 |
| MAG03521 | SJTD3_bin.63 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__JACRMK01;f__JACRMK01;g__JACRMK01;s__ | 73.0 | 4.34 | 65.0 | 4,585 | 3,507,955 |
| MAG03522 | SJTD3_bin.64 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__JAIOPA01;s__ | 89.23 | 2.14 | 72.0 | 23,379 | 3,983,231 |
| MAG03523 | SJTD3_bin.7 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 85.68 | 0.64 | 64.0 | 13,469 | 2,049,205 |
| MAG03524 | SJTD3_bin.71 | d__Bacteria;p__Armatimonadota;c__Chthonomonadetes;o__Chthonomonadales;f__CAJBBX01;g__;s__ | 63.62 | 1.85 | 62.0 | 6,290 | 3,699,957 |
| MAG03525 | SJTD3_bin.72 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__PALSA-1003;s__ | 94.76 | 2.12 | 65.0 | 56,471 | 5,047,802 |
| MAG03526 | SJTD3_bin.73 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__DP-6;f__DP-6;g__DATJZY01;s__ | 92.69 | 4.5 | 71.0 | 25,672 | 5,437,739 |
| MAG03527 | SJTD3_bin.74 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__DAHUXD01;s__ | 81.97 | 2.97 | 70.0 | 49,655 | 3,097,331 |
| MAG03528 | SJTD3_bin.75 | d__Bacteria;p__Nitrospirota;c__UBA9217;o__UBA9217;f__UBA9217;g__JALNZF01;s__ | 99.04 | 0.8 | 54.0 | 94,176 | 3,216,774 |
| MAG03529 | SJTD3_bin.76 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__DATIGO01;s__ | 80.3 | 0.83 | 64.0 | 32,666 | 4,594,634 |
| MAG03530 | SJTD3_bin.8 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus;s__Pedococcus sp036278335 | 66.13 | 0.39 | 72.0 | 4,140 | 2,204,366 |
| MAG03531 | SJTD3_bin.81 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__JALYGJ01;s__ | 79.8 | 1.58 | 69.0 | 6,862 | 2,546,560 |
| MAG03532 | SJTD3_bin.82 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__JAKOUY01;s__ | 86.89 | 1.16 | 71.0 | 46,717 | 3,550,818 |
| MAG03533 | SJTD3_bin.83 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__VBCG01 sp035696805 | 74.13 | 0.93 | 67.0 | 13,398 | 2,529,721 |
| MAG03534 | SJTD3_bin.84 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosospira;s__ | 65.7 | 1.65 | 54.0 | 7,779 | 1,615,430 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |