GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0088 |
|---|---|
| Name | SRD1 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 29.098889 N 116.676389 E |
| Altitude (m) | 19.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 1.5674 |
| TP (g/kg) | 0.9089 |
| TS (g/kg) | 0.0829 |
| TC (g/kg) | 16.2000 |
| Fe (mg/kg) | 20475.5839 |
| Mn (mg/kg) | 334.3949 |
| C/N | 10.3355 |
| IC (g/kg) | 2.9209 |
| MBC (g/kg) | 0.6564 |
| pH | 6.0000 |
| Water content (%) | 0.2936 |
| NO3- (mg/kg) | 9.7673 |
| NH4+ (mg/kg) | 46.9865 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs23
The MAGs in SMP0088
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03535 | SRD1_bin.1 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAQBQB01;s__JAQBQB01 sp036392315 | 86.5 | 3.54 | 65.0 | 15,207 | 5,119,092 |
| MAG03536 | SRD1_bin.10 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_C;s__ | 76.94 | 3.41 | 57.0 | 8,191 | 2,402,125 |
| MAG03537 | SRD1_bin.11 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 85.79 | 3.12 | 69.0 | 18,511 | 3,321,287 |
| MAG03538 | SRD1_bin.12 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JADGQX01;s__ | 74.06 | 2.45 | 70.0 | 6,874 | 4,220,773 |
| MAG03539 | SRD1_bin.13 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA4142;f__UBA4142;g__JACQYF01;s__ | 77.2 | 4.63 | 58.0 | 5,681 | 5,084,039 |
| MAG03540 | SRD1_bin.14 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__DASQJL01;s__ | 52.27 | 0.39 | 70.0 | 9,350 | 1,848,777 |
| MAG03541 | SRD1_bin.15 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__QHBO01;f__QHBO01;g__CF-82;s__ | 77.8 | 1.58 | 71.0 | 20,327 | 1,931,643 |
| MAG03542 | SRD1_bin.18 | d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Eremiobacterales;f__Eremiobacteraceae;g__JANWLL01;s__ | 77.25 | 3.51 | 66.0 | 7,522 | 2,432,028 |
| MAG03543 | SRD1_bin.19 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAIQGF01;g__JAIQGF01;s__JAIQGF01 sp035691485 | 87.68 | 4.47 | 61.0 | 26,067 | 3,879,245 |
| MAG03544 | SRD1_bin.2 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__Fen-1262;s__ | 59.62 | 1.62 | 63.0 | 4,845 | 2,742,042 |
| MAG03545 | SRD1_bin.21 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAICWP01;g__JAICWP01;s__JAICWP01 sp035702725 | 83.45 | 2.18 | 61.0 | 10,581 | 4,874,768 |
| MAG03546 | SRD1_bin.22 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Micropepsales;f__Micropepsaceae;g__Rhizomicrobium;s__ | 74.65 | 1.71 | 61.0 | 10,950 | 2,190,517 |
| MAG03547 | SRD1_bin.24 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__SbA1;g__QIAJ01;s__ | 57.69 | 1.2 | 59.0 | 15,171 | 2,163,272 |
| MAG03548 | SRD1_bin.25 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter;s__ | 68.45 | 2.84 | 67.0 | 5,751 | 3,374,273 |
| MAG03549 | SRD1_bin.27 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__Fen-181;g__Fen-181;s__ | 83.1 | 2.8 | 67.0 | 20,417 | 5,773,307 |
| MAG03550 | SRD1_bin.28 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__B-17B0;f__B-17BO;g__UBA4416;s__ | 89.13 | 2.3 | 34.0 | 7,599 | 3,364,028 |
| MAG03551 | SRD1_bin.29 | d__Bacteria;p__Sysuimicrobiota;c__Sysuimicrobiia;o__Sysuimicrobiales;f__Segetimicrobiaceae;g__DASSJF01;s__ | 88.36 | 4.35 | 70.0 | 9,830 | 3,162,157 |
| MAG03552 | SRD1_bin.3 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASTHG01;s__DASTHG01 sp035691925 | 100.0 | 0.26 | 68.0 | 22,844 | 3,880,878 |
| MAG03553 | SRD1_bin.30 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__40CM-4-65-16;s__40CM-4-65-16 sp035689485 | 70.5 | 3.64 | 68.0 | 6,430 | 2,450,869 |
| MAG03554 | SRD1_bin.4 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter;s__ | 80.7 | 4.51 | 74.0 | 8,803 | 3,333,451 |
| MAG03555 | SRD1_bin.6 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__SCGC-AG-212-J23 sp035689325 | 56.68 | 1.28 | 68.0 | 5,650 | 2,690,334 |
| MAG03556 | SRD1_bin.8 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAEZPW01;g__;s__ | 88.43 | 3.21 | 60.0 | 91,857 | 4,369,967 |
| MAG03557 | SRD1_bin.9 | d__Bacteria;p__Acidobacteriota;c__UBA6911;o__UBA6911;f__UBA6911;g__JAFNAG01;s__ | 85.66 | 3.38 | 58.0 | 8,603 | 4,429,218 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |