GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0090 |
|---|---|
| Name | SRD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 29.098889 N 116.676389 E |
| Altitude (m) | 19.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 2.1750 |
| TP (g/kg) | 0.9277 |
| TS (g/kg) | 0.1727 |
| TC (g/kg) | 21.7300 |
| Fe (mg/kg) | 20238.4937 |
| Mn (mg/kg) | 388.8889 |
| C/N | 9.9907 |
| IC (g/kg) | 3.6592 |
| MBC (g/kg) | 0.8881 |
| pH | 5.6700 |
| Water content (%) | 0.3239 |
| NO3- (mg/kg) | -2.1371 |
| NH4+ (mg/kg) | 109.3944 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs24
The MAGs in SMP0090
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03578 | SRD3_bin.10 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;s__ | 67.89 | 1.13 | 65.0 | 13,255 | 3,122,069 |
| MAG03579 | SRD3_bin.16 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__Palsa-739;s__ | 60.6 | 0.35 | 70.0 | 5,028 | 1,740,418 |
| MAG03580 | SRD3_bin.17 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAEZPW01;g__;s__ | 93.36 | 5.25 | 62.0 | 15,817 | 4,012,660 |
| MAG03581 | SRD3_bin.18 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAQBQB01;s__JAQBQB01 sp036392315 | 83.99 | 1.31 | 65.0 | 10,692 | 4,478,074 |
| MAG03582 | SRD3_bin.19 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__LMDS01;s__ | 74.38 | 1.05 | 72.0 | 6,715 | 3,806,717 |
| MAG03583 | SRD3_bin.20 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__ | 90.72 | 2.69 | 68.0 | 13,256 | 3,661,378 |
| MAG03584 | SRD3_bin.21 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 94.37 | 0.89 | 69.0 | 67,021 | 3,358,215 |
| MAG03585 | SRD3_bin.22 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__;s__ | 88.67 | 4.33 | 63.0 | 37,000 | 5,671,021 |
| MAG03586 | SRD3_bin.24 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 93.91 | 1.94 | 62.0 | 77,094 | 2,746,763 |
| MAG03587 | SRD3_bin.25 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__DASUWK01;s__ | 78.71 | 0.89 | 71.0 | 66,387 | 2,385,554 |
| MAG03588 | SRD3_bin.27 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rudaea;s__ | 84.95 | 0.62 | 68.0 | 11,699 | 3,690,503 |
| MAG03589 | SRD3_bin.29 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAICWP01;g__JAICWP01;s__JAICWP01 sp036375915 | 68.39 | 0.15 | 62.0 | 17,731 | 3,380,893 |
| MAG03590 | SRD3_bin.3 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Aquirhabdus;s__ | 89.83 | 5.31 | 43.0 | 16,660 | 3,061,207 |
| MAG03591 | SRD3_bin.31 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8190;g__DASRBM01;s__ | 79.34 | 4.42 | 74.0 | 5,876 | 2,241,345 |
| MAG03592 | SRD3_bin.32 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__VBCG01 sp035718935 | 88.51 | 0.0 | 68.0 | 26,740 | 3,524,009 |
| MAG03593 | SRD3_bin.33 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter;s__ | 86.02 | 3.36 | 41.0 | 7,712 | 4,758,559 |
| MAG03594 | SRD3_bin.34 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__DATGEO01;s__ | 74.56 | 2.39 | 68.0 | 21,760 | 2,328,967 |
| MAG03595 | SRD3_bin.35 | d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Eremiobacterales;f__Eremiobacteraceae;g__JANWLL01;s__ | 96.33 | 1.24 | 66.0 | 12,644 | 2,699,201 |
| MAG03596 | SRD3_bin.36 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Aquirhabdus;s__ | 66.1 | 2.15 | 43.0 | 4,084 | 2,438,242 |
| MAG03597 | SRD3_bin.39 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Dormibacterales;f__Dormibacteraceae;g__DASUWK01;s__ | 69.11 | 0.88 | 72.0 | 24,404 | 1,895,531 |
| MAG03598 | SRD3_bin.5 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__Fen-1262;s__ | 68.5 | 2.24 | 63.0 | 3,947 | 3,270,653 |
| MAG03599 | SRD3_bin.6 | d__Bacteria;p__Chloroflexota;c__Dormibacteria;o__Aeolococcales;f__Aeolococcaceae;g__;s__ | 88.72 | 0.84 | 73.0 | 22,885 | 2,591,886 |
| MAG03600 | SRD3_bin.8 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__JAJXWV01;s__ | 76.71 | 1.05 | 65.0 | 7,946 | 3,982,240 |
| MAG03601 | SRD3_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__13-2-20CM-66-19;s__ | 89.25 | 3.7 | 67.0 | 26,408 | 3,581,446 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |