GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0093 |
|---|---|
| Name | SX3 |
| Type | river |
| Habitat | sediment |
| Country | China |
| Latitude and longitude | 30.7722 N 111.1856 E |
| Altitude (m) | 373.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 0.6569 |
| TP (g/kg) | 0.7435 |
| TS (g/kg) | 0.7138 |
| TC (g/kg) | 25.9900 |
| Fe (mg/kg) | 28983.3024 |
| Mn (mg/kg) | 750.4638 |
| C/N | 39.5633 |
| IC (g/kg) | 19.4404 |
| MBC (g/kg) | 0.0787 |
| pH | 7.4200 |
| Water content (%) | 0.3077 |
| NO3- (mg/kg) | 2.0349 |
| NH4+ (mg/kg) | 15.0955 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs31
The MAGs in SMP0093
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03649 | SX3_bin.1 | d__Bacteria;p__WOR-3;c__WOR-3;o__SM23-42;f__DASVHD01;g__;s__ | 82.49 | 1.52 | 59.0 | 5,868 | 2,246,188 |
| MAG03650 | SX3_bin.15 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium sp002831585 | 94.6 | 0.32 | 65.0 | 14,778 | 7,471,147 |
| MAG03651 | SX3_bin.17 | d__Archaea;p__Aenigmatarchaeota;c__Aenigmatarchaeia;o__CG10238-14;f__SCSR01;g__DATEUU01;s__ | 75.71 | 0.27 | 40.0 | 11,547 | 616,598 |
| MAG03652 | SX3_bin.2 | d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__SZUA-6;f__Fen-1364;g__;s__ | 77.0 | 1.74 | 65.0 | 28,024 | 3,160,643 |
| MAG03653 | SX3_bin.21 | d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteriia;o__Krumholzibacteriales;f__Krumholzibacteriaceae;g__;s__ | 64.85 | 2.71 | 66.0 | 2,550 | 2,193,612 |
| MAG03654 | SX3_bin.23 | d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__JACTUA01;g__JAJRCM01;s__ | 81.83 | 0.6 | 53.0 | 6,467 | 1,364,916 |
| MAG03655 | SX3_bin.24 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__JACORV01;g__JADGQW01;s__ | 70.67 | 0.51 | 71.0 | 9,893 | 2,660,425 |
| MAG03656 | SX3_bin.25 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__VFZS01;s__ | 65.59 | 1.57 | 69.0 | 5,540 | 3,163,026 |
| MAG03657 | SX3_bin.26 | d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Dehalococcoidales;f__RBG-16-60-22;g__RBG-13-51-18;s__ | 85.99 | 5.46 | 50.0 | 9,258 | 2,025,552 |
| MAG03658 | SX3_bin.27 | d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__SZUA-6;f__Fen-1364;g__JAPLSM01;s__ | 79.56 | 3.34 | 70.0 | 12,289 | 2,879,674 |
| MAG03659 | SX3_bin.28 | d__Archaea;p__Aenigmatarchaeota;c__Aenigmatarchaeia;o__QMZP01;f__QMZT01;g__JBGPQP01;s__ | 66.58 | 0.71 | 53.0 | 6,476 | 628,569 |
| MAG03660 | SX3_bin.29 | d__Bacteria;p__Nitrospirota;c__JAOUDF01;o__JAOUDF01;f__JAOUDF01;g__JAOUDF01;s__JAOUDF01 sp029859385 | 95.43 | 0.01 | 57.0 | 16,785 | 2,137,121 |
| MAG03661 | SX3_bin.3 | d__Archaea;p__Thermoproteota;c__Methanomethylicia;o__Methanomethylicales;f__Methanomethylicaceae;g__Methanomethylicus;s__ | 56.94 | 0.01 | 54.0 | 6,676 | 267,105 |
| MAG03662 | SX3_bin.30 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__WJJR01;f__JAJRUJ01;g__;s__ | 94.13 | 4.97 | 60.0 | 5,726 | 2,474,715 |
| MAG03663 | SX3_bin.31 | d__Archaea;p__Altiarchaeota;c__Altiarchaeia;o__IMC4;f__SCGC-AAA252-I15;g__;s__ | 62.35 | 2.11 | 58.0 | 2,843 | 1,127,748 |
| MAG03664 | SX3_bin.32 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__JAAZOE01;g__JAZGGI01;s__ | 69.57 | 1.95 | 55.0 | 3,510 | 1,793,576 |
| MAG03665 | SX3_bin.33 | d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__SZUA-6;f__Fen-1364;g__;s__ | 83.89 | 6.13 | 65.0 | 30,380 | 3,665,439 |
| MAG03666 | SX3_bin.34 | d__Archaea;p__Thermoplasmatota;c__DTKX01;o__VGTL01;f__VGTL01;g__VGTL01;s__ | 88.23 | 1.61 | 65.0 | 15,672 | 3,299,181 |
| MAG03667 | SX3_bin.35 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Melioribacteraceae;g__;s__ | 100.0 | 0.97 | 36.0 | 40,057 | 3,339,114 |
| MAG03668 | SX3_bin.39 | d__Archaea;p__Thermoplasmatota;c__DTKX01;o__VGTL01;f__VGTL01;g__VGTL01;s__ | 57.41 | 0.25 | 68.0 | 3,115 | 1,664,909 |
| MAG03669 | SX3_bin.4 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__CAIYYT01;f__CAIYYT01;g__CAIYYT01;s__ | 93.28 | 1.25 | 56.0 | 8,542 | 2,821,063 |
| MAG03670 | SX3_bin.42 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__JACIVX01;g__JAJRAG01;s__JAJRAG01 sp028679985 | 91.0 | 0.3 | 55.0 | 11,048 | 1,224,731 |
| MAG03671 | SX3_bin.43 | d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Methanofastidiosales;f__;g__;s__ | 93.2 | 0.17 | 57.0 | 6,501 | 1,832,138 |
| MAG03672 | SX3_bin.44 | d__Bacteria;p__Caldisericota;c__Caldisericia;o__JAAYUI01;f__JAAYUI01;g__;s__ | 90.68 | 1.07 | 40.0 | 9,742 | 1,398,577 |
| MAG03673 | SX3_bin.47 | d__Archaea;p__Aenigmatarchaeota;c__Aenigmatarchaeia;o__CG10238-14;f__SCSR01;g__JAPLUY01;s__ | 81.52 | 0.05 | 57.0 | 13,744 | 549,803 |
| MAG03674 | SX3_bin.48 | d__Archaea;p__Asgardarchaeota;c__Lokiarchaeia;o__Sigynarchaeales;f__MK-D1;g__AMARA-1;s__ | 88.38 | 1.76 | 36.0 | 10,779 | 2,847,151 |
| MAG03675 | SX3_bin.51 | d__Archaea;p__Thermoplasmatota;c__DTKX01;o__DTKX01;f__GCA-020343715;g__;s__ | 72.3 | 2.51 | 68.0 | 4,602 | 2,873,122 |
| MAG03676 | SX3_bin.53 | d__Bacteria;p__Margulisbacteria;c__WOR-1;o__O2-12-FULL-45-9;f__O2-12-FULL-45-9;g__;s__ | 57.34 | 0.41 | 53.0 | 1,774 | 601,168 |
| MAG03677 | SX3_bin.7 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__;s__ | 72.95 | 1.02 | 68.0 | 6,635 | 1,867,556 |
| MAG03678 | SX3_bin.8 | d__Archaea;p__Hydrothermarchaeota;c__Hydrothermarchaeia;o__Hydrothermarchaeales;f__JAZFTJ01;g__;s__ | 95.81 | 1.34 | 58.0 | 13,122 | 1,410,038 |
| MAG03679 | SX3_bin.9 | d__Archaea;p__Nanobdellota;c__Nanobdellia;o__B33-G15;f__DAOVEB01;g__;s__ | 72.67 | 0.81 | 55.0 | 5,583 | 615,108 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |