GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0097 |
|---|---|
| Name | TGS1 |
| Type | river |
| Habitat | sediment |
| Country | China |
| Latitude and longitude | 34.608889 N 110.293889 E |
| Altitude (m) | 383.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 0.6677 |
| TP (g/kg) | 0.6519 |
| TS (g/kg) | 0.2148 |
| TC (g/kg) | 15.1900 |
| Fe (mg/kg) | 20210.4283 |
| Mn (mg/kg) | 456.2384 |
| C/N | 22.7509 |
| IC (g/kg) | 13.5307 |
| MBC (g/kg) | 0.1066 |
| pH | 8.2300 |
| Water content (%) | 0.2089 |
| NO3- (mg/kg) | -1.2202 |
| NH4+ (mg/kg) | 1.1843 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs10
The MAGs in SMP0097
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03808 | TGS1_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__UBA2031;s__ | 85.04 | 3.63 | 59.0 | 11,220 | 2,442,440 |
| MAG03809 | TGS1_bin.11 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 99.98 | 0.1 | 67.0 | 96,476 | 7,881,205 |
| MAG03810 | TGS1_bin.12 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea;s__ | 67.16 | 0.13 | 45.0 | 3,301 | 2,592,005 |
| MAG03811 | TGS1_bin.14 | d__Bacteria;p__Bacteroidota_A;c__Rhodothermia;o__Rhodothermales;f__UBA10348;g__JAHEEH01;s__ | 89.75 | 0.48 | 69.0 | 9,514 | 3,275,562 |
| MAG03812 | TGS1_bin.2 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__Ga0077527;s__ | 95.76 | 2.35 | 65.0 | 12,399 | 2,941,519 |
| MAG03813 | TGS1_bin.3 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__;s__ | 86.55 | 3.54 | 67.0 | 25,230 | 2,006,727 |
| MAG03814 | TGS1_bin.4 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__UBA2031;s__ | 87.6 | 6.69 | 61.0 | 13,186 | 2,616,586 |
| MAG03815 | TGS1_bin.5 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__ | 71.78 | 3.27 | 64.0 | 6,098 | 1,792,539 |
| MAG03816 | TGS1_bin.6 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__;s__ | 67.96 | 1.3 | 64.0 | 4,344 | 1,797,157 |
| MAG03817 | TGS1_bin.9 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 92.68 | 4.51 | 52.0 | 9,816 | 5,129,239 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |