GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0098 |
|---|---|
| Name | TGS2 |
| Type | river |
| Habitat | sediment |
| Country | China |
| Latitude and longitude | 34.608889 N 110.293889 E |
| Altitude (m) | 383.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 0.6993 |
| TP (g/kg) | 0.5802 |
| TS (g/kg) | 0.2386 |
| TC (g/kg) | 15.7100 |
| Fe (mg/kg) | 19716.5669 |
| Mn (mg/kg) | 477.0459 |
| C/N | 22.4644 |
| IC (g/kg) | 14.2035 |
| MBC (g/kg) | 0.1171 |
| pH | 8.1300 |
| Water content (%) | 0.2492 |
| NO3- (mg/kg) | -1.0784 |
| NH4+ (mg/kg) | 1.5021 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs9
The MAGs in SMP0098
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03818 | TGS2_bin.10 | d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__UBA1565;f__UBA9628;g__GWA2-66-18;s__ | 73.3 | 4.13 | 69.0 | 6,447 | 2,804,900 |
| MAG03819 | TGS2_bin.12 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea;s__ | 62.17 | 2.14 | 45.0 | 3,221 | 2,941,943 |
| MAG03820 | TGS2_bin.18 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Zeaxanthinibacter;s__ | 64.98 | 0.66 | 49.0 | 4,092 | 2,245,488 |
| MAG03821 | TGS2_bin.19 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 99.6 | 1.18 | 67.0 | 82,657 | 7,721,718 |
| MAG03822 | TGS2_bin.20 | d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Phormidesmidales;f__Phormidesmidaceae;g__Halomicronema;s__ | 89.5 | 0.9 | 58.0 | 9,038 | 4,265,772 |
| MAG03823 | TGS2_bin.5 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__;s__ | 92.7 | 2.78 | 64.0 | 9,424 | 3,206,221 |
| MAG03824 | TGS2_bin.7 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81;s__ | 93.05 | 4.26 | 65.0 | 7,975 | 3,149,675 |
| MAG03825 | TGS2_bin.8 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__;s__ | 77.8 | 3.0 | 67.0 | 17,995 | 2,412,114 |
| MAG03826 | TGS2_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__Ga0077527;s__ | 91.97 | 2.6 | 65.0 | 9,628 | 2,986,796 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |