GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0103 |
|---|---|
| Name | TLS1 |
| Type | marsh |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 43.291389 N 122.592222 E |
| Altitude (m) | 196.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-29 |
| Physicochemical properties | |
| TN (g/kg) | 0.5433 |
| TP (g/kg) | 0.0868 |
| TS (g/kg) | 0.0958 |
| TC (g/kg) | 4.8500 |
| Fe (mg/kg) | |
| Mn (mg/kg) | |
| C/N | 8.9272 |
| IC (g/kg) | 2.4892 |
| MBC (g/kg) | 0.1660 |
| pH | 8.7400 |
| Water content (%) | 0.1314 |
| NO3- (mg/kg) | 10.6397 |
| NH4+ (mg/kg) | 2.9588 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs9
The MAGs in SMP0103
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03972 | TLS1_bin.1 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__ | 96.6 | 0.81 | 65.0 | 17,024 | 2,337,552 |
| MAG03973 | TLS1_bin.11 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D;s__Nitrospira_D sp041742455 | 98.86 | 5.77 | 54.0 | 9,598 | 4,503,716 |
| MAG03974 | TLS1_bin.16 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__DATBLQ01;s__ | 90.31 | 3.28 | 60.0 | 43,242 | 3,094,461 |
| MAG03975 | TLS1_bin.17 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__TH1177;s__TH1177 sp025922715 | 65.88 | 1.61 | 30.0 | 2,767 | 1,403,299 |
| MAG03976 | TLS1_bin.3 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__CF-46;s__ | 74.98 | 1.71 | 71.0 | 15,675 | 2,920,801 |
| MAG03977 | TLS1_bin.4 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__TH5896;s__TH5896 sp014523695 | 65.44 | 1.38 | 40.0 | 3,265 | 986,115 |
| MAG03978 | TLS1_bin.5 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__QHVT01;s__ | 85.13 | 4.02 | 63.0 | 5,723 | 4,280,628 |
| MAG03979 | TLS1_bin.8 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__JARDZU01;s__ | 88.41 | 3.0 | 66.0 | 4,905 | 2,425,814 |
| MAG03980 | TLS1_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__Perlucidibaca sp947085865 | 87.12 | 0.93 | 50.0 | 16,083 | 1,932,140 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |