GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0113 |
|---|---|
| Name | WXD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 31.418056 N 120.234444 E |
| Altitude (m) | 13.9 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-03-27 |
| Physicochemical properties | |
| TN (g/kg) | 0.9201 |
| TP (g/kg) | 0.5310 |
| TS (g/kg) | 0.0532 |
| TC (g/kg) | 9.6700 |
| Fe (mg/kg) | 29704.5455 |
| Mn (mg/kg) | 952.7972 |
| C/N | 10.5097 |
| IC (g/kg) | 2.3710 |
| MBC (g/kg) | 1.0752 |
| pH | 8.1000 |
| Water content (%) | 0.2444 |
| NO3- (mg/kg) | 8.8771 |
| NH4+ (mg/kg) | 77.8394 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs12
The MAGs in SMP0113
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04299 | WXD2_bin.1 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 98.77 | 0.46 | 67.0 | 19,900 | 7,468,956 |
| MAG04300 | WXD2_bin.11 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Defluviilinea;s__ | 65.28 | 1.68 | 52.0 | 4,783 | 3,701,248 |
| MAG04301 | WXD2_bin.13 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Ferrovibrionales;f__Ferrovibrionaceae;g__JAFKFH01;s__ | 72.85 | 3.42 | 68.0 | 5,074 | 5,123,077 |
| MAG04302 | WXD2_bin.16 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b;s__ | 93.12 | 3.98 | 66.0 | 10,526 | 3,940,137 |
| MAG04303 | WXD2_bin.17 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__QHVT01;s__ | 72.37 | 1.35 | 67.0 | 7,662 | 3,581,654 |
| MAG04304 | WXD2_bin.18 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter;s__ | 82.68 | 2.65 | 67.0 | 14,736 | 4,008,169 |
| MAG04305 | WXD2_bin.19 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__DATKCD01;s__ | 74.8 | 0.86 | 68.0 | 4,356 | 3,087,869 |
| MAG04306 | WXD2_bin.4 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Denitrolinea;s__ | 92.67 | 3.15 | 57.0 | 7,938 | 3,521,468 |
| MAG04307 | WXD2_bin.6 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__CAIXRL01;s__ | 88.21 | 3.95 | 74.0 | 7,457 | 3,979,210 |
| MAG04308 | WXD2_bin.7 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UBA9968;f__UBA9968;g__DP-20;s__DP-20 sp035455905 | 69.44 | 2.59 | 55.0 | 4,233 | 3,413,714 |
| MAG04309 | WXD2_bin.8 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__;s__ | 85.62 | 2.13 | 74.0 | 5,694 | 2,521,738 |
| MAG04310 | WXD2_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__CFH-32150;s__ | 89.15 | 5.43 | 69.0 | 13,768 | 2,499,758 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |