GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0114 |
|---|---|
| Name | WXD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 31.418056 N 120.234444 E |
| Altitude (m) | 13.9 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-03-27 |
| Physicochemical properties | |
| TN (g/kg) | 0.8216 |
| TP (g/kg) | 0.5105 |
| TS (g/kg) | 0.0694 |
| TC (g/kg) | 7.2300 |
| Fe (mg/kg) | 32461.2546 |
| Mn (mg/kg) | 804.4280 |
| C/N | 8.7996 |
| IC (g/kg) | 0.0427 |
| MBC (g/kg) | 1.0696 |
| pH | 7.2200 |
| Water content (%) | 0.2128 |
| NO3- (mg/kg) | 49.1293 |
| NH4+ (mg/kg) | 4.6929 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs14
The MAGs in SMP0114
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04311 | WXD3_bin.10 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Conyzicola;s__ | 94.09 | 1.14 | 67.0 | 28,328 | 2,731,622 |
| MAG04312 | WXD3_bin.14 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__;s__ | 72.9 | 4.51 | 64.0 | 7,039 | 4,230,638 |
| MAG04313 | WXD3_bin.15 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Ferrovibrionales;f__Ferrovibrionaceae;g__JAFKFH01;s__ | 96.6 | 2.73 | 68.0 | 24,546 | 6,684,413 |
| MAG04314 | WXD3_bin.16 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Cognatiluteimonas_A;s__ | 59.61 | 1.13 | 69.0 | 12,355 | 1,713,449 |
| MAG04315 | WXD3_bin.19 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__CFH-32150;s__ | 97.96 | 8.59 | 69.0 | 15,111 | 2,450,763 |
| MAG04316 | WXD3_bin.2 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Kineosporiaceae;g__JAUPKQ01;s__ | 77.55 | 1.16 | 72.0 | 6,835 | 4,039,771 |
| MAG04317 | WXD3_bin.20 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax facilis | 65.77 | 2.2 | 65.0 | 5,269 | 3,290,372 |
| MAG04318 | WXD3_bin.21 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__ | 68.73 | 0.11 | 43.0 | 6,101 | 2,071,355 |
| MAG04319 | WXD3_bin.22 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Cognatiluteimonas_A;s__ | 94.27 | 4.53 | 66.0 | 11,087 | 2,440,379 |
| MAG04320 | WXD3_bin.23 | d__Bacteria;p__Patescibacteriota;c__Minisyncoccia;o__UBA9973;f__UBA2103;g__C7867-001;s__ | 59.31 | 1.26 | 57.0 | 2,446 | 433,568 |
| MAG04321 | WXD3_bin.3 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sphaerotilus;s__ | 74.9 | 3.53 | 69.0 | 6,406 | 4,986,275 |
| MAG04322 | WXD3_bin.5 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__ | 86.61 | 1.23 | 48.0 | 8,021 | 4,159,538 |
| MAG04323 | WXD3_bin.6 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 95.0 | 2.24 | 67.0 | 34,560 | 7,319,073 |
| MAG04324 | WXD3_bin.7 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__DASSSG01;s__ | 62.13 | 0.83 | 63.0 | 4,842 | 4,489,605 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |