GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0116 |
|---|---|
| Name | WZS2 |
| Type | river |
| Habitat | sediment |
| Country | China |
| Latitude and longitude | 38.002042 N 106.152489 E |
| Altitude (m) | 1110.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2023-05-14 |
| Physicochemical properties | |
| TN (g/kg) | 0.7862 |
| TP (g/kg) | 0.7368 |
| TS (g/kg) | 0.2080 |
| TC (g/kg) | 23.5000 |
| Fe (mg/kg) | 31496.1090 |
| Mn (mg/kg) | 642.9961 |
| C/N | 29.8889 |
| IC (g/kg) | 17.6244 |
| MBC (g/kg) | 0.1236 |
| pH | 8.2400 |
| Water content (%) | 0.2593 |
| NO3- (mg/kg) | |
| NH4+ (mg/kg) | 4.3160 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs13
The MAGs in SMP0116
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04346 | WZS2_bin.1 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerobacaceae;g__JAFGPJ01;s__ | 94.27 | 1.69 | 51.0 | 42,527 | 5,543,226 |
| MAG04347 | WZS2_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 99.77 | 0.23 | 67.0 | 35,467 | 7,769,603 |
| MAG04348 | WZS2_bin.14 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A;s__Nitrospira_A sp900170025 | 76.33 | 1.71 | 60.0 | 6,977 | 2,649,249 |
| MAG04349 | WZS2_bin.17 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__JAGXRT01;s__JAGXRT01 sp023700885 | 65.73 | 1.71 | 30.0 | 7,188 | 1,677,752 |
| MAG04350 | WZS2_bin.2 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__ | 81.41 | 4.01 | 63.0 | 11,942 | 2,665,982 |
| MAG04351 | WZS2_bin.20 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__DT-91;g__DATCSZ01;s__ | 72.69 | 0.71 | 54.0 | 12,075 | 1,926,590 |
| MAG04352 | WZS2_bin.21 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA4823;g__JAKOUW01;s__ | 62.3 | 1.01 | 55.0 | 9,295 | 2,150,627 |
| MAG04353 | WZS2_bin.23 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Archangium_A;s__ | 77.06 | 4.72 | 72.0 | 5,723 | 6,111,244 |
| MAG04354 | WZS2_bin.5 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__JAMHUH01;s__ | 84.53 | 1.94 | 68.0 | 17,704 | 7,832,054 |
| MAG04355 | WZS2_bin.6 | d__Bacteria;p__Armatimonadota;c__Fimbriimonadia;o__Fimbriimonadales;f__Fimbriimonadaceae;g__55-13;s__ | 84.42 | 3.41 | 59.0 | 6,844 | 2,993,557 |
| MAG04356 | WZS2_bin.7 | d__Bacteria;p__Bacteroidota_A;c__SZUA-365;o__SZUA-365;f__SZUA-365;g__SZUA-365;s__ | 70.8 | 1.85 | 60.0 | 4,138 | 2,852,220 |
| MAG04357 | WZS2_bin.8 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__JADJQN01;g__CAIUAC01;s__ | 84.86 | 3.01 | 71.0 | 9,352 | 6,468,828 |
| MAG04358 | WZS2_bin.9 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJLQ01;s__ | 91.61 | 0.11 | 49.0 | 7,906 | 4,083,066 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |