GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0124 |
|---|---|
| Name | YYD1 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 29.457222 N 112.764444 E |
| Altitude (m) | 26.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 1.2509 |
| TP (g/kg) | 0.8904 |
| TS (g/kg) | 0.1015 |
| TC (g/kg) | 22.8800 |
| Fe (mg/kg) | 32010.3306 |
| Mn (mg/kg) | 727.2727 |
| C/N | 18.2902 |
| IC (g/kg) | 12.6999 |
| MBC (g/kg) | 0.6907 |
| pH | 7.8000 |
| Water content (%) | 0.4000 |
| NO3- (mg/kg) | -5.3509 |
| NH4+ (mg/kg) | 6.3725 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs15
The MAGs in SMP0124
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04615 | YYD1_bin.1 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Opimibacter;s__ | 88.06 | 2.61 | 45.0 | 5,045 | 3,635,598 |
| MAG04616 | YYD1_bin.10 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__FEB-12;g__FEB-12;s__ | 94.84 | 3.16 | 55.0 | 8,080 | 2,822,980 |
| MAG04617 | YYD1_bin.11 | d__Bacteria;p__Sysuimicrobiota;c__Sysuimicrobiia;o__Sysuimicrobiales;f__Kaftiobacteriaceae;g__Kaftiobacterium;s__Kaftiobacterium sp035763845 | 75.53 | 0.69 | 71.0 | 7,301 | 1,878,542 |
| MAG04618 | YYD1_bin.14 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SZUA-320;s__SZUA-320 sp035709185 | 65.64 | 0.46 | 68.0 | 4,836 | 1,879,791 |
| MAG04619 | YYD1_bin.15 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__JAERML01;s__ | 94.37 | 0.32 | 57.0 | 5,279 | 2,978,040 |
| MAG04620 | YYD1_bin.16 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA4823;g__JAKOUW01;s__ | 60.09 | 1.54 | 55.0 | 6,547 | 2,783,316 |
| MAG04621 | YYD1_bin.17 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__CAIMUX01;f__VGJL01;g__;s__ | 72.07 | 0.53 | 69.0 | 5,045 | 2,003,851 |
| MAG04622 | YYD1_bin.18 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__;s__ | 89.48 | 3.16 | 69.0 | 9,126 | 2,160,971 |
| MAG04623 | YYD1_bin.2 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 88.96 | 3.89 | 65.0 | 10,143 | 5,745,984 |
| MAG04624 | YYD1_bin.20 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__FEB-35;s__ | 86.09 | 4.23 | 65.0 | 5,015 | 2,091,982 |
| MAG04625 | YYD1_bin.3 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__CACIAM-22H2;f__CACIAM-22H2;g__DATFES01;s__DATFES01 sp035457725 | 96.42 | 1.18 | 65.0 | 15,197 | 3,772,620 |
| MAG04626 | YYD1_bin.4 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__SCGC-AG-212-J23 sp025929745 | 92.76 | 7.25 | 66.0 | 7,577 | 3,489,576 |
| MAG04627 | YYD1_bin.6 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JAICEH01;s__JAICEH01 sp035457305 | 63.3 | 0.26 | 73.0 | 7,280 | 1,655,147 |
| MAG04628 | YYD1_bin.7 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__2-12-FULL-66-21;g__;s__ | 75.43 | 2.72 | 68.0 | 9,669 | 3,444,914 |
| MAG04629 | YYD1_bin.8 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 52.35 | 0.3 | 53.0 | 4,687 | 2,145,494 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |