GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0125 |
|---|---|
| Name | YYD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 29.457222 N 112.764444 E |
| Altitude (m) | 26.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 1.5892 |
| TP (g/kg) | 0.9410 |
| TS (g/kg) | 0.1081 |
| TC (g/kg) | 25.1700 |
| Fe (mg/kg) | 34523.8095 |
| Mn (mg/kg) | 700.8282 |
| C/N | 15.8382 |
| IC (g/kg) | 11.1246 |
| MBC (g/kg) | 0.7101 |
| pH | 7.7300 |
| Water content (%) | 0.3143 |
| NO3- (mg/kg) | -4.7245 |
| NH4+ (mg/kg) | 5.8447 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs14
The MAGs in SMP0125
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04630 | YYD2_bin.1 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 94.7 | 3.28 | 65.0 | 13,062 | 7,127,241 |
| MAG04631 | YYD2_bin.10 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Denitrolinea;s__ | 68.35 | 3.58 | 59.0 | 7,290 | 2,154,363 |
| MAG04632 | YYD2_bin.11 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__TH1177;s__TH1177 sp035706205 | 84.46 | 1.62 | 28.0 | 2,967 | 2,251,750 |
| MAG04633 | YYD2_bin.12 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__20CM-2-55-15;f__20CM-2-55-15;g__DASTBJ01;s__DASTBJ01 sp035712125 | 72.77 | 2.26 | 57.0 | 9,033 | 3,196,716 |
| MAG04634 | YYD2_bin.13 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__CAIMUX01;f__VGJL01;g__;s__ | 76.39 | 4.17 | 69.0 | 5,198 | 2,814,269 |
| MAG04635 | YYD2_bin.15 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__CACIAM-22H2;f__CACIAM-22H2;g__DATFES01;s__DATFES01 sp035457725 | 99.17 | 1.0 | 65.0 | 26,545 | 3,833,000 |
| MAG04636 | YYD2_bin.16 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__Polarisedimenticolales;f__DASRJG01;g__DASVAW01;s__DASVAW01 sp036376135 | 81.07 | 3.19 | 71.0 | 10,145 | 3,198,989 |
| MAG04637 | YYD2_bin.19 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__JAERML01;s__ | 94.78 | 0.88 | 57.0 | 7,675 | 3,289,923 |
| MAG04638 | YYD2_bin.21 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__FEB-12;g__;s__ | 57.42 | 0.98 | 56.0 | 4,887 | 2,044,988 |
| MAG04639 | YYD2_bin.24 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__FEB-12;g__FEB-12;s__ | 98.56 | 2.45 | 55.0 | 19,666 | 2,993,504 |
| MAG04640 | YYD2_bin.26 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__TA-21;s__TA-21 sp035620895 | 62.62 | 1.33 | 35.0 | 3,195 | 1,334,495 |
| MAG04641 | YYD2_bin.4 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 71.01 | 3.26 | 52.0 | 5,408 | 3,674,850 |
| MAG04642 | YYD2_bin.6 | d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteriia;o__WVZY01;f__JAKEHA01;g__JAKEHA01;s__ | 85.27 | 1.08 | 65.0 | 15,964 | 3,655,715 |
| MAG04643 | YYD2_bin.9 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__OLB5;g__DASXTZ01;s__ | 94.73 | 4.06 | 42.0 | 6,837 | 2,926,187 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |