## Sun Mar 16 07:43:45 2025
## emapper-2.1.9
## /home/zhangkaihang/.conda/envs/eggnog-mapper/bin/emapper.py -i /home/zhangkaihang/metadata_analysis/metawrap/paddysoil/4paddy/bin4gtdbtk/DYD1_bin.73.fa -m mmseqs --itype genome -o DYD1_bin.73 --output_dir /home/zhangkaihang/metadata_analysis/eggnog-mapper/paddysoil/4paddy/DYD1_bin.73 --cpu 8
##
#query	seed_ortholog	evalue	score	eggNOG_OGs	max_annot_lvl	COG_category	Description	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	PFAMs
DYD1_k127_1036039_2	865937.Gilli_0474	1.608e-18	91.0	COG3059@1|root,COG3059@2|Bacteria,4NNX8@976|Bacteroidetes,1I2AZ@117743|Flavobacteriia	976|Bacteroidetes	S	membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF417,DoxX
DYD1_k127_1036039_1	765952.PUV_26380	1.225e-82	285.0	COG2269@1|root,COG2269@2|Bacteria,2JFTW@204428|Chlamydiae	204428|Chlamydiae	J	tRNA synthetases class II (D, K and N)	genX	-	-	ko:K04568	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	tRNA-synt_2
DYD1_k127_1036039_0	331113.SNE_A04080	5.802e-114	371.0	COG2820@1|root,COG2820@2|Bacteria,2JFWB@204428|Chlamydiae	204428|Chlamydiae	F	AMP nucleosidase	amn	-	3.2.2.4	ko:K01241	ko00230,map00230	-	R00182	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	PNP_UDP_1
DYD1_k127_1165722_2	331113.SNE_A11490	9.349e-105	347.0	COG1039@1|root,COG1039@2|Bacteria,2JFW4@204428|Chlamydiae	204428|Chlamydiae	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhC	-	3.1.26.4	ko:K03471	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DUF3378,RNase_HII
DYD1_k127_1165722_3	331113.SNE_A11500	3.132e-43	161.0	COG1426@1|root,COG1426@2|Bacteria,2JG6D@204428|Chlamydiae	204428|Chlamydiae	S	Helix-turn-helix domain	yfgA	-	-	-	-	-	-	-	-	-	-	-	HTH_25
DYD1_k127_1165722_0	331113.SNE_A11530	1.16e-213	678.0	COG0515@1|root,COG1262@1|root,COG0515@2|Bacteria,COG1262@2|Bacteria,2JFPX@204428|Chlamydiae	204428|Chlamydiae	KLT	Together with the serine threonine kinase PknD, may play a role in the specific interactions with host proteins during intracellular growth	pkn1	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,Pkinase
DYD1_k127_1165722_4	765952.PUV_12520	3.153e-37	145.0	COG0394@1|root,COG0394@2|Bacteria,2JG5M@204428|Chlamydiae	204428|Chlamydiae	T	Low molecular weight protein-tyrosine-phosphatase	-	-	3.1.3.48	ko:K01104	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
DYD1_k127_1165722_1	331113.SNE_A11560	1.893e-143	460.0	COG0761@1|root,COG0761@2|Bacteria,2JFVQ@204428|Chlamydiae	204428|Chlamydiae	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis	ispH	-	1.17.7.4	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05884,R08210	RC01137,RC01487	ko00000,ko00001,ko00002,ko01000	-	-	-	LYTB
DYD1_k127_1173899_2	938289.CAJN020000002_gene766	5.362e-46	181.0	COG0124@1|root,COG0124@2|Bacteria,1TP3D@1239|Firmicutes,24852@186801|Clostridia,268DU@186813|unclassified Clostridiales	186801|Clostridia	J	Psort location Cytoplasmic, score 10.00	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_His
DYD1_k127_1173899_1	765952.PUV_06200	2.248e-50	191.0	COG1126@1|root,COG1126@2|Bacteria,2JH6Q@204428|Chlamydiae	204428|Chlamydiae	E	ABC transporter	glnQ	-	3.6.3.21	ko:K02028	-	M00236	-	-	ko00000,ko00002,ko01000,ko02000	3.A.1.3	-	-	ABC_tran
DYD1_k127_1173899_3	387631.Asulf_00789	2.906e-32	134.0	COG0765@1|root,arCOG01798@2157|Archaea,2XV8Y@28890|Euryarchaeota	28890|Euryarchaeota	P	amino acid ABC transporter	glnP	-	-	ko:K02029	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	BPD_transp_1
DYD1_k127_1173899_6	273068.TTE0512	1.748e-24	113.0	COG0834@1|root,COG0834@2|Bacteria,1TT16@1239|Firmicutes,24CEZ@186801|Clostridia,42F7E@68295|Thermoanaerobacterales	186801|Clostridia	ET	PFAM Extracellular solute-binding protein, family 3	artP	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD1_k127_1173899_7	1463841.JOIR01000020_gene3394	7.688e-18	88.0	COG4538@1|root,COG4538@2|Bacteria,2IMZM@201174|Actinobacteria	201174|Actinobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
DYD1_k127_1173899_4	1123073.KB899241_gene3328	4.134e-29	128.0	COG0697@1|root,COG0697@2|Bacteria,1RCED@1224|Proteobacteria,1SB4S@1236|Gammaproteobacteria,1X6MG@135614|Xanthomonadales	135614|Xanthomonadales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD1_k127_1173899_0	1120999.JONM01000003_gene2597	2.859e-111	370.0	COG2175@1|root,COG2175@2|Bacteria,1NFYT@1224|Proteobacteria,2W4YB@28216|Betaproteobacteria	28216|Betaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	-	-	-	-	-	-	-	-	-	-	-	-	TauD
DYD1_k127_1173899_5	2754.EH55_02505	1.588e-26	119.0	COG3382@1|root,COG3382@2|Bacteria,3TB4A@508458|Synergistetes	508458|Synergistetes	S	B3 4 domain	-	-	-	-	-	-	-	-	-	-	-	-	B3_4
DYD1_k127_1173899_8	1121430.JMLG01000001_gene2196	4.182e-09	65.0	COG0834@1|root,COG0834@2|Bacteria,1UFZS@1239|Firmicutes,24FKA@186801|Clostridia,2652X@186807|Peptococcaceae	186801|Clostridia	ET	PFAM Extracellular solute-binding protein, family 3	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
DYD1_k127_118552_2	234267.Acid_3421	3.862e-13	74.0	COG0791@1|root,COG0791@2|Bacteria,3Y5IG@57723|Acidobacteria	57723|Acidobacteria	M	NlpC/P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60,SPOR
DYD1_k127_118552_1	1185653.A1A1_13357	3.15e-28	124.0	COG0463@1|root,COG0463@2|Bacteria,1TQ8C@1239|Firmicutes,4HDD4@91061|Bacilli,26EGE@186818|Planococcaceae	91061|Bacilli	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2,GtrA
DYD1_k127_1198474_1	765952.PUV_10580	1.579e-47	180.0	COG1388@1|root,COG1388@2|Bacteria,2JGB6@204428|Chlamydiae	204428|Chlamydiae	M	Lysin motif	-	-	-	-	-	-	-	-	-	-	-	-	LysM
DYD1_k127_1198474_2	71421.HI_1000	1.353e-19	91.0	COG0759@1|root,COG0759@2|Bacteria,1N6U4@1224|Proteobacteria,1SCG6@1236|Gammaproteobacteria,1Y901@135625|Pasteurellales	135625|Pasteurellales	S	Could be involved in insertion of integral membrane proteins into the membrane	-	-	-	ko:K08998	-	-	-	-	ko00000	-	-	-	Haemolytic
DYD1_k127_1198474_0	1157490.EL26_03800	3.844e-86	301.0	COG1164@1|root,COG1164@2|Bacteria,1U8XY@1239|Firmicutes,4HEV8@91061|Bacilli	91061|Bacilli	E	Peptidase M3A and M3B thimet oligopeptidase F	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M2,Peptidase_M3
DYD1_k127_1205539_0	331113.SNE_A12250	6.857e-91	313.0	COG3202@1|root,COG3202@2|Bacteria	2|Bacteria	C	ATP:ADP antiporter activity	-	-	-	ko:K03301	-	-	-	-	ko00000	2.A.12	-	-	TLC
DYD1_k127_1205539_1	331113.SNE_A12270	0.0003284	46.0	COG1078@1|root,COG1078@2|Bacteria,2JHB7@204428|Chlamydiae	204428|Chlamydiae	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	ko:K06885	-	-	-	-	ko00000	-	-	-	HD
DYD1_k127_1213513_1	1444711.CCJF01000005_gene647	6.252e-26	117.0	2C2FJ@1|root,32RAD@2|Bacteria,2JG5S@204428|Chlamydiae	204428|Chlamydiae	-	-	CP_1044	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1213513_0	331113.SNE_A02930	3.368e-73	256.0	COG4669@1|root,COG4669@2|Bacteria,2JFMR@204428|Chlamydiae	204428|Chlamydiae	U	Type III	sctJ	-	-	ko:K03222	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	YscJ_FliF
DYD1_k127_1249227_1	765952.PUV_06060	1.363e-80	277.0	COG1420@1|root,COG1420@2|Bacteria,2JFK0@204428|Chlamydiae	204428|Chlamydiae	K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons	hrcA	-	-	ko:K03705	-	-	-	-	ko00000,ko03000	-	-	-	HrcA
DYD1_k127_1249227_2	1444711.CCJF01000005_gene742	1.614e-46	173.0	COG0576@1|root,COG0576@2|Bacteria,2JG6C@204428|Chlamydiae	204428|Chlamydiae	O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ	grpE	-	-	ko:K03687	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	GrpE
DYD1_k127_1249227_0	331113.SNE_A05330	3.728e-314	971.0	COG0443@1|root,COG0443@2|Bacteria,2JFEI@204428|Chlamydiae	204428|Chlamydiae	O	Heat shock 70 kDa protein	dnaK	GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010	-	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1	-	-	HSP70
DYD1_k127_1252626_0	765952.PUV_22680	7.6e-111	366.0	COG0276@1|root,COG0276@2|Bacteria,2JGXV@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the ferrous insertion into protoporphyrin IX	hemH	-	4.99.1.1,4.99.1.9	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R00310,R11329	RC01012	ko00000,ko00001,ko00002,ko01000	-	-	-	Ferrochelatase
DYD1_k127_1252626_1	331113.SNE_A02960	6.779e-78	272.0	COG0859@1|root,COG0859@2|Bacteria	2|Bacteria	M	ADP-heptose-lipopolysaccharide heptosyltransferase activity	-	-	-	ko:K02843	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
DYD1_k127_1258348_1	247490.KSU1_C1303	2.535e-71	249.0	COG0366@1|root,COG0366@2|Bacteria,2IYAN@203682|Planctomycetes	203682|Planctomycetes	G	Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB	glgE	-	2.4.99.16	ko:K16147	ko00500,ko01100,map00500,map01100	-	R09994	-	ko00000,ko00001,ko01000	-	GH13	-	Alpha-amylase,DUF3416
DYD1_k127_1258348_2	1502852.FG94_03692	0.0006963	48.0	COG3391@1|root,COG3391@2|Bacteria,1PGUU@1224|Proteobacteria,2WAW5@28216|Betaproteobacteria,476SP@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	NHL repeat	-	-	-	-	-	-	-	-	-	-	-	-	NHL
DYD1_k127_1258348_0	390874.Tpet_0358	1.187e-137	441.0	COG0500@1|root,COG1181@1|root,COG1181@2|Bacteria,COG2226@2|Bacteria,2GBZA@200918|Thermotogae	200918|Thermotogae	F	Belongs to the D-alanine--D-alanine ligase family	-	-	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	-	R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Methyltransf_25
DYD1_k127_1300171_1	586416.GZ22_00780	7.772e-28	117.0	COG1495@1|root,COG1495@2|Bacteria,1V79S@1239|Firmicutes,4HIKP@91061|Bacilli	91061|Bacilli	O	Required for disulfide bond formation in some proteins	bdbC	-	-	ko:K03611	-	-	-	-	ko00000,ko03110	5.A.2.1	-	-	DsbB
DYD1_k127_1300171_2	227941.CCA_00588	3.787e-18	93.0	COG1651@1|root,COG1651@2|Bacteria	2|Bacteria	O	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process	bdbD	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_4
DYD1_k127_1300171_3	159087.Daro_1036	0.0003881	44.0	COG0664@1|root,COG0664@2|Bacteria,1R5P7@1224|Proteobacteria,2VIQI@28216|Betaproteobacteria,2KUQN@206389|Rhodocyclales	206389|Rhodocyclales	K	Crp Fnr family transcriptional regulator	-	-	-	ko:K21563	-	-	-	-	ko00000,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
DYD1_k127_1300171_0	331113.SNE_A18450	5.697e-113	376.0	COG0617@1|root,COG0617@2|Bacteria,2JFVS@204428|Chlamydiae	204428|Chlamydiae	H	Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control	pcnB	-	2.7.7.19	ko:K00970	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PolyA_pol,PolyA_pol_RNAbd,PolyA_pol_arg_C
DYD1_k127_1310868_4	716544.wcw_0798	2.646e-16	80.0	COG0275@1|root,COG0275@2|Bacteria,2JHHJ@204428|Chlamydiae	204428|Chlamydiae	M	Putative rRNA methylase	-	-	-	-	-	-	-	-	-	-	-	-	rRNA_methylase
DYD1_k127_1310868_2	716544.wcw_0791	2.007e-64	234.0	COG0285@1|root,COG0285@2|Bacteria,2JFSY@204428|Chlamydiae	204428|Chlamydiae	H	Mur ligase middle domain	folC	-	6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	Mur_ligase_C,Mur_ligase_M
DYD1_k127_1310868_1	35841.BT1A1_1148	5.297e-67	237.0	COG0656@1|root,COG0656@2|Bacteria,1TPM1@1239|Firmicutes,4HARE@91061|Bacilli,1ZC55@1386|Bacillus	91061|Bacilli	S	reductase	dkgA	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD1_k127_1310868_0	331113.SNE_A13980	4.462e-75	261.0	COG0613@1|root,COG0613@2|Bacteria,2JFUH@204428|Chlamydiae	204428|Chlamydiae	S	DNA polymerase alpha chain like domain	-	-	3.1.3.97	ko:K07053	-	-	R00188,R11188	RC00078	ko00000,ko01000	-	-	-	PHP
DYD1_k127_1310868_3	765952.PUV_10220	1.097e-29	121.0	COG0812@1|root,COG0812@2|Bacteria,2JFHG@204428|Chlamydiae	204428|Chlamydiae	M	Cell wall formation	murB	-	1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	FAD_binding_4,MurB_C
DYD1_k127_1311932_2	411474.COPEUT_01660	5.798e-06	51.0	COG0770@1|root,COG0770@2|Bacteria,1VT78@1239|Firmicutes,25100@186801|Clostridia	186801|Clostridia	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	murF	-	6.3.2.10	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	-	R04573,R04617	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD1_k127_1311932_1	1444711.CCJF01000005_gene1052	2.688e-14	74.0	COG0472@1|root,COG0472@2|Bacteria,2JFHV@204428|Chlamydiae	204428|Chlamydiae	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	mraY	-	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	-	R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146	-	-	Glycos_transf_4,MraY_sig1
DYD1_k127_1311932_0	665571.STHERM_c08950	8.635e-83	286.0	COG0472@1|root,COG0472@2|Bacteria,2J6QK@203691|Spirochaetes	203691|Spirochaetes	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	mraY	-	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	-	R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146	-	-	Glycos_transf_4,MraY_sig1
DYD1_k127_1356331_2	1444711.CCJF01000005_gene551	6.487e-22	97.0	COG0842@1|root,COG0842@2|Bacteria,2JFXH@204428|Chlamydiae	204428|Chlamydiae	V	ABC-2 family transporter protein	ybhS	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD1_k127_1356331_0	1444711.CCJF01000005_gene550	1.574e-194	621.0	COG1131@1|root,COG1131@2|Bacteria,2JFJI@204428|Chlamydiae	204428|Chlamydiae	V	ABC transporter	ybhF	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD1_k127_1356331_1	765952.PUV_01630	9.642e-89	300.0	COG0845@1|root,COG0845@2|Bacteria,2JFET@204428|Chlamydiae	204428|Chlamydiae	M	Biotin-lipoyl like	-	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	HlyD_D23
DYD1_k127_1376804_1	331113.SNE_A05570	1.972e-211	665.0	COG1674@1|root,COG1674@2|Bacteria,2JFN4@204428|Chlamydiae	204428|Chlamydiae	D	Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Required for activation of the Xer recombinase, allowing activation of chromosome unlinking by recombination (By similarity)	ftsK	-	-	ko:K03466	-	-	-	-	ko00000,ko03036	3.A.12	-	-	FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma
DYD1_k127_1376804_3	331113.SNE_A05560	3.261e-80	276.0	COG0745@1|root,COG1235@1|root,COG0745@2|Bacteria,COG1235@2|Bacteria	2|Bacteria	P	May be involved in the transport of PQQ or its precursor to the periplasm	elaC	-	3.1.26.11	ko:K00784	ko03013,map03013	-	-	-	ko00000,ko00001,ko01000,ko03016	-	-	-	Lactamase_B_2
DYD1_k127_1376804_2	1444711.CCJF01000004_gene2053	1.182e-97	325.0	COG1235@1|root,COG1235@2|Bacteria,2JFDF@204428|Chlamydiae	204428|Chlamydiae	S	Metallo-beta-lactamase superfamily	yycJ	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
DYD1_k127_1376804_4	716544.wcw_0031	7.493e-78	276.0	COG0204@1|root,COG0204@2|Bacteria,2JHHV@204428|Chlamydiae	204428|Chlamydiae	I	Transmembrane secretion effector	-	-	2.3.1.40,6.2.1.20	ko:K05939	ko00071,ko00564,map00071,map00564	-	R01406,R04864	RC00014,RC00039,RC00041	ko00000,ko00001,ko01000	-	-	-	Acyltransferase,MFS_1
DYD1_k127_1376804_0	331113.SNE_A05470	2.118e-272	853.0	COG0022@1|root,COG1071@1|root,COG0022@2|Bacteria,COG1071@2|Bacteria,2JFWU@204428|Chlamydiae	204428|Chlamydiae	C	2-oxoisovalerate dehydrogenase, e1 component, alpha and beta subunit	CP_0743	-	1.2.4.4	ko:K00167,ko:K11381	ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130	M00036	R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997	RC00027,RC00627,RC02743,RC02883,RC02949,RC02953	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	E1_dh,Transket_pyr,Transketolase_C
DYD1_k127_1392512_2	397945.Aave_2787	1.102e-26	119.0	COG1032@1|root,COG1032@2|Bacteria	2|Bacteria	C	radical SAM domain protein	-	-	-	-	-	-	-	-	-	-	-	-	B12-binding,Radical_SAM
DYD1_k127_1392512_1	673862.BABL1_400	1.541e-32	138.0	COG0697@1|root,COG0697@2|Bacteria	2|Bacteria	EG	spore germination	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD1_k127_1393949_0	331113.SNE_A21420	1.139e-117	395.0	COG0815@1|root,COG0815@2|Bacteria,2JFX7@204428|Chlamydiae	204428|Chlamydiae	M	Transfers the fatty acyl group on membrane lipoproteins	lnt	-	-	ko:K03820	-	-	-	-	ko00000,ko01000	-	GT2	-	CN_hydrolase
DYD1_k127_1393949_1	331113.SNE_A21410	1.74e-97	327.0	COG0774@1|root,COG0774@2|Bacteria,2JFHE@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis	lpxC	-	3.5.1.108	ko:K02535	ko00540,ko01100,map00540,map01100	M00060	R04587	RC00166,RC00300	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxC
DYD1_k127_1401554_2	1239962.C943_00462	8.068e-05	48.0	COG1373@1|root,COG1373@2|Bacteria,4NE39@976|Bacteroidetes	976|Bacteroidetes	S	ATPase (AAA superfamily)	-	-	-	ko:K07133	-	-	-	-	ko00000	-	-	-	AAA_14,DUF4143
DYD1_k127_1401554_0	1122176.KB903531_gene2847	1.993e-127	415.0	COG0057@1|root,COG0057@2|Bacteria,4NEMF@976|Bacteroidetes,1IQAX@117747|Sphingobacteriia	976|Bacteroidetes	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	-	-	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD1_k127_1401554_1	485918.Cpin_1398	1.469e-111	370.0	COG0126@1|root,COG0126@2|Bacteria,4NFW2@976|Bacteroidetes,1IPGS@117747|Sphingobacteriia	976|Bacteroidetes	G	Belongs to the phosphoglycerate kinase family	pgk	-	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD1_k127_1417255_1	331113.SNE_A08770	2.029e-118	386.0	COG1624@1|root,COG1624@2|Bacteria,2JFE0@204428|Chlamydiae	204428|Chlamydiae	S	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria	dacA	-	-	-	-	-	-	-	-	-	-	-	DisA_N
DYD1_k127_1417255_0	331113.SNE_A08760	4.172e-129	425.0	COG1624@1|root,COG1624@2|Bacteria,2JFIM@204428|Chlamydiae	204428|Chlamydiae	S	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria	CP_0674	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1417255_2	331113.SNE_A08750	1.213e-76	265.0	COG0438@1|root,COG0438@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	rfaG	-	-	ko:K02844	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT4	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD1_k127_143230_1	1405296.Q499_0904	4.751e-67	230.0	COG0208@1|root,COG0208@2|Bacteria,2JFH1@204428|Chlamydiae	204428|Chlamydiae	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	nrdB	-	1.17.4.1	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_sm
DYD1_k127_143230_0	1123399.AQVE01000001_gene650	0.0	1531.0	COG0209@1|root,COG1372@1|root,COG0209@2|Bacteria,COG1372@2|Bacteria,1MUJ8@1224|Proteobacteria,1RMPV@1236|Gammaproteobacteria,4606X@72273|Thiotrichales	72273|Thiotrichales	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	nrdA	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	ATP-cone,LAGLIDADG_3,Ribonuc_red_lgC,Ribonuc_red_lgN
DYD1_k127_1446184_11	765952.PUV_19370	2.846e-32	130.0	COG0496@1|root,COG0496@2|Bacteria,2JFU0@204428|Chlamydiae	204428|Chlamydiae	F	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	surE	-	3.1.3.5	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	SurE
DYD1_k127_1446184_9	1173028.ANKO01000041_gene3178	2.163e-59	211.0	COG2173@1|root,COG2173@2|Bacteria,1G56H@1117|Cyanobacteria,1HAFJ@1150|Oscillatoriales	1117|Cyanobacteria	M	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide	-	-	3.4.13.22	ko:K08641	ko01502,ko02020,map01502,map02020	M00651	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	-	-	-	Peptidase_M15
DYD1_k127_1446184_3	331113.SNE_A05950	1.55e-111	367.0	COG1284@1|root,COG1284@2|Bacteria,2JFIE@204428|Chlamydiae	204428|Chlamydiae	S	Uncharacterized protein conserved in bacteria (DUF2179)	yqfU	-	-	-	-	-	-	-	-	-	-	-	DUF2179,YitT_membrane
DYD1_k127_1446184_7	264201.pc0775	1.408e-87	295.0	COG1611@1|root,COG1611@2|Bacteria,2JFQC@204428|Chlamydiae	204428|Chlamydiae	S	Possible lysine decarboxylase	-	-	3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240	-	R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	Lysine_decarbox
DYD1_k127_1446184_2	1158604.I591_01367	3.937e-123	400.0	COG1209@1|root,COG1209@2|Bacteria,1V301@1239|Firmicutes,4H9R0@91061|Bacilli,4B0GS@81852|Enterococcaceae	91061|Bacilli	H	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis	rfbA	-	2.7.7.24	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	M00793	R02328	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
DYD1_k127_1446184_0	1444711.CCJF01000005_gene1724	1.746e-235	734.0	COG0439@1|root,COG0439@2|Bacteria,2JFW0@204428|Chlamydiae	204428|Chlamydiae	I	Biotin carboxylase	accC	-	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
DYD1_k127_1446184_10	716544.wcw_0868	2.487e-33	133.0	COG0511@1|root,COG0511@2|Bacteria,2JGBI@204428|Chlamydiae	204428|Chlamydiae	I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	accB	-	-	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742	RC00040,RC00367	ko00000,ko00001,ko00002	-	-	-	Biotin_lipoyl
DYD1_k127_1446184_8	264201.pc0769	2.061e-73	251.0	COG0231@1|root,COG0231@2|Bacteria,2JFYK@204428|Chlamydiae	204428|Chlamydiae	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase	efp1	-	-	ko:K02356	-	-	-	-	ko00000,ko03012	-	-	-	EFP,EFP_N,Elong-fact-P_C
DYD1_k127_1446184_1	331113.SNE_A17470	1.242e-152	488.0	COG0391@1|root,COG0391@2|Bacteria	2|Bacteria	S	phosphotransferase activity, for other substituted phosphate groups	ybhK	-	-	-	-	-	-	-	-	-	-	-	UPF0052
DYD1_k127_1446184_4	1444712.BN1013_01751	1.25e-101	336.0	COG0036@1|root,COG0036@2|Bacteria,2JFP2@204428|Chlamydiae	204428|Chlamydiae	G	Belongs to the ribulose-phosphate 3-epimerase family	rpe	-	5.1.3.1	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01529	RC00540	ko00000,ko00001,ko00002,ko01000	-	-	-	Ribul_P_3_epim
DYD1_k127_1446184_6	1279017.AQYJ01000025_gene736	3.894e-89	306.0	COG0668@1|root,COG0668@2|Bacteria,1MXD2@1224|Proteobacteria,1RNUB@1236|Gammaproteobacteria,464I7@72275|Alteromonadaceae	1236|Gammaproteobacteria	M	COG0668 Small-conductance mechanosensitive channel	ynaI	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0042802,GO:0044464,GO:0071944	-	ko:K16052	-	-	-	-	ko00000,ko02000	1.A.23.4	-	-	MS_channel
DYD1_k127_1446184_5	716544.wcw_0863	7.575e-90	310.0	COG4166@1|root,COG4166@2|Bacteria,2JFKE@204428|Chlamydiae	204428|Chlamydiae	E	transmembrane transport	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1447634_1	351160.RCIX1480	9.732e-33	138.0	arCOG06926@1|root,arCOG06926@2157|Archaea	2157|Archaea	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1447634_0	331113.SNE_A07010	5.653e-136	439.0	COG0039@1|root,COG0039@2|Bacteria,2JFTH@204428|Chlamydiae	204428|Chlamydiae	C	Catalyzes the reversible oxidation of malate to oxaloacetate	mdh	-	1.1.1.37	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740	R00342,R07136	RC00031	ko00000,ko00001,ko00002,ko01000	-	-	-	Ldh_1_C,Ldh_1_N
DYD1_k127_1447634_2	716544.wcw_1240	6.119e-24	104.0	COG0372@1|root,COG0372@2|Bacteria,2JFPR@204428|Chlamydiae	204428|Chlamydiae	C	Citrate synthase, C-terminal domain	gltA	-	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt
DYD1_k127_1448143_0	1444711.CCJF01000004_gene2284	2.626e-266	829.0	COG1155@1|root,COG1155@2|Bacteria,2JFIJ@204428|Chlamydiae	204428|Chlamydiae	F	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit	atpA	-	3.6.3.14,3.6.3.15	ko:K02117	ko00190,ko01100,map00190,map01100	M00159	-	-	ko00000,ko00001,ko00002,ko01000	3.A.2.2,3.A.2.3	-	-	ATP-synt_ab,ATP-synt_ab_N,ATP-synt_ab_Xtn
DYD1_k127_1448143_1	716544.wcw_0604	1.22e-61	221.0	28PGQ@1|root,2ZC7E@2|Bacteria,2JFYT@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF2764)	CP_0687	-	-	-	-	-	-	-	-	-	-	-	DUF2764
DYD1_k127_1448143_2	765952.PUV_23330	3.148e-54	197.0	COG1390@1|root,COG1390@2|Bacteria,2JG7T@204428|Chlamydiae	204428|Chlamydiae	C	Produces ATP from ADP in the presence of a proton gradient across the membrane	atpE	-	-	ko:K02121	ko00190,ko01100,map00190,map01100	M00159	-	-	ko00000,ko00001,ko00002	3.A.2.2,3.A.2.3	-	-	HrpE
DYD1_k127_1452676_4	331113.SNE_A00410	6.305e-07	55.0	298AF@1|root,2ZVFZ@2|Bacteria,2JHFY@204428|Chlamydiae	204428|Chlamydiae	M	In elementary bodies (EBs, the infectious stage, which is able to survive outside the host cell) provides the structural integrity of the outer envelope through disulfide cross-links with the small cysteine-rich protein and the large cysteine-rich periplasmic protein. It has been described in publications as the Sarkosyl-insoluble COMC (Chlamydia outer membrane complex), and serves as the functional equivalent of peptidoglycan	ompA	GO:0005575,GO:0005576,GO:0005623,GO:0009986,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044464,GO:0065010	-	ko:K03162	-	-	-	-	ko00000,ko02000	1.B.2.1	-	-	Chlam_OMP
DYD1_k127_1452676_1	331113.SNE_A01700	7.555e-83	294.0	COG0323@1|root,COG0323@2|Bacteria,2JFM7@204428|Chlamydiae	204428|Chlamydiae	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	mutL	-	-	ko:K03572	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	DNA_mis_repair,HATPase_c_3,MutL_C
DYD1_k127_1452676_2	716544.wcw_1869	7.116e-77	269.0	COG0006@1|root,COG0006@2|Bacteria,2JFYS@204428|Chlamydiae	204428|Chlamydiae	E	Creatinase/Prolidase N-terminal domain	pepP	-	3.4.11.9	ko:K01262	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Creatinase_N,Peptidase_M24
DYD1_k127_1452676_0	1437425.CSEC_1736	2.109e-98	337.0	COG5002@1|root,COG5002@2|Bacteria,2JFDA@204428|Chlamydiae	204428|Chlamydiae	T	PAS domain	phoR	-	2.7.13.3	ko:K07636	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS
DYD1_k127_1452676_3	331113.SNE_A01890	1.305e-50	185.0	COG1297@1|root,COG1297@2|Bacteria,2JHFP@204428|Chlamydiae	204428|Chlamydiae	S	OPT oligopeptide transporter protein	-	-	-	-	-	-	-	-	-	-	-	-	OPT
DYD1_k127_1482016_0	663610.JQKO01000008_gene199	4.069e-129	434.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR56@28211|Alphaproteobacteria,3N9V6@45404|Beijerinckiaceae	28211|Alphaproteobacteria	P	haloacid dehalogenase-like hydrolase	cadA	-	-	-	-	-	-	-	-	-	-	-	E1-E2_ATPase,Hemerythrin,Hydrolase
DYD1_k127_1482016_2	565655.ECBG_02219	0.0005841	49.0	COG0454@1|root,COG0456@2|Bacteria,1VFVQ@1239|Firmicutes,4HK5T@91061|Bacilli,4B332@81852|Enterococcaceae	91061|Bacilli	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
DYD1_k127_1482016_1	765952.PUV_06700	6.398e-86	292.0	29ZJT@1|root,30MK2@2|Bacteria,2JG2M@204428|Chlamydiae	204428|Chlamydiae	-	-	CP_0080	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1520417_4	1122207.MUS1_09455	2.014e-05	52.0	COG1986@1|root,COG1986@2|Bacteria,1R60T@1224|Proteobacteria,1RNVT@1236|Gammaproteobacteria,1XPKZ@135619|Oceanospirillales	135619|Oceanospirillales	F	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions	-	-	-	-	-	-	-	-	-	-	-	-	NTPase_I-T
DYD1_k127_1520417_0	765952.PUV_17630	5.568e-89	297.0	COG3896@1|root,COG3896@2|Bacteria,2JGFS@204428|Chlamydiae	204428|Chlamydiae	V	Chloramphenicol phosphotransferase-like protein	-	-	-	ko:K18554	-	-	-	-	br01600,ko00000,ko01000,ko01504	-	-	-	CPT
DYD1_k127_1520417_1	1437425.CSEC_2120	2.403e-51	186.0	COG3708@1|root,COG3708@2|Bacteria,2JGHZ@204428|Chlamydiae	204428|Chlamydiae	K	Bacterial transcription activator, effector binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Cass2
DYD1_k127_1520417_2	935567.JAES01000038_gene998	2.6e-26	118.0	arCOG10178@1|root,2ZAAA@2|Bacteria,1RFIS@1224|Proteobacteria,1SXSR@1236|Gammaproteobacteria,1X8QZ@135614|Xanthomonadales	135614|Xanthomonadales	S	CAAX protease self-immunity	-	-	-	-	-	-	-	-	-	-	-	-	Abi
DYD1_k127_1520417_3	267377.MMP0995	1.021e-14	76.0	arCOG04882@1|root,arCOG04882@2157|Archaea,2Y4S5@28890|Euryarchaeota	28890|Euryarchaeota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1527577_0	1437425.CSEC_2368	3.478e-260	808.0	COG4108@1|root,COG4108@2|Bacteria,2JFKT@204428|Chlamydiae	204428|Chlamydiae	J	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	-	-	-	ko:K02837	-	-	-	-	ko00000,ko03012	-	-	-	GTP_EFTU,RF3_C
DYD1_k127_1527577_2	765952.PUV_21100	5.053e-55	197.0	COG0169@1|root,COG0710@1|root,COG1670@1|root,COG0169@2|Bacteria,COG0710@2|Bacteria,COG1670@2|Bacteria,2JFIF@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	aroE	GO:0000166,GO:0003674,GO:0003824,GO:0003855,GO:0004764,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25,4.2.1.10	ko:K13832	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413,R03084	RC00206,RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_I,Shikimate_DH,Shikimate_dh_N
DYD1_k127_1527577_3	135651.CBN19232	1.881e-06	57.0	COG2940@1|root,KOG1082@2759|Eukaryota,38GXX@33154|Opisthokonta,3BA3A@33208|Metazoa,3D0GH@33213|Bilateria,40EPG@6231|Nematoda,1KX2Z@119089|Chromadorea,410Z5@6236|Rhabditida	33208|Metazoa	B	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	EHMT1	GO:0000003,GO:0000122,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000976,GO:0000977,GO:0001012,GO:0001067,GO:0001708,GO:0002039,GO:0002165,GO:0002682,GO:0002697,GO:0002831,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0006139,GO:0006259,GO:0006275,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007130,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007399,GO:0007444,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007614,GO:0007616,GO:0007626,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008345,GO:0008757,GO:0009267,GO:0009410,GO:0009566,GO:0009605,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010424,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010720,GO:0010769,GO:0010770,GO:0010948,GO:0010975,GO:0010976,GO:0014070,GO:0016043,GO:0016241,GO:0016242,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018026,GO:0018027,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030518,GO:0030522,GO:0030534,GO:0030537,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031344,GO:0031346,GO:0031347,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032259,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032776,GO:0032870,GO:0033043,GO:0033044,GO:0033554,GO:0033993,GO:0034641,GO:0034968,GO:0035075,GO:0035076,GO:0035220,GO:0035265,GO:0035295,GO:0035690,GO:0036166,GO:0036211,GO:0036314,GO:0036315,GO:0040007,GO:0042054,GO:0042220,GO:0042221,GO:0042493,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043401,GO:0043412,GO:0043414,GO:0043565,GO:0043900,GO:0044030,GO:0044085,GO:0044087,GO:0044088,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044728,GO:0045132,GO:0045143,GO:0045165,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045786,GO:0045892,GO:0045934,GO:0045995,GO:0046483,GO:0046958,GO:0046959,GO:0046974,GO:0046976,GO:0048148,GO:0048232,GO:0048285,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048589,GO:0048609,GO:0048663,GO:0048665,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050688,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051052,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051567,GO:0051569,GO:0051570,GO:0051574,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060359,GO:0060429,GO:0061647,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070316,GO:0070317,GO:0070734,GO:0070742,GO:0070887,GO:0071242,GO:0071310,GO:0071312,GO:0071314,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0072347,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0098687,GO:0098813,GO:0120035,GO:0140013,GO:0140096,GO:1900006,GO:1900109,GO:1900111,GO:1901360,GO:1901363,GO:1901564,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902115,GO:1902116,GO:1902275,GO:1902679,GO:1902902,GO:1903046,GO:1903506,GO:1903507,GO:1905269,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2000785,GO:2001141,GO:2001252	2.1.1.43	ko:K11420	ko00310,ko04211,map00310,map04211	-	R03875,R03938,R04866,R04867	RC00003,RC00060,RC00181,RC00496	ko00000,ko00001,ko01000,ko03036	-	-	-	Ank_2,Ank_4,Pre-SET,SET
DYD1_k127_1527577_1	314345.SPV1_03293	1.513e-141	459.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria	1224|Proteobacteria	P	ATPase, P-type transporting, HAD superfamily, subfamily IC	-	-	3.6.3.6	ko:K01535	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	3.A.3.3	-	-	Cation_ATPase_N,E1-E2_ATPase,Hydrolase
DYD1_k127_153222_5	1304872.JAGC01000009_gene1079	3.043e-17	85.0	COG1437@1|root,COG1437@2|Bacteria,1N326@1224|Proteobacteria,42U83@68525|delta/epsilon subdivisions,2WQQR@28221|Deltaproteobacteria,2MBY3@213115|Desulfovibrionales	28221|Deltaproteobacteria	F	PFAM Adenylate cyclase	-	-	4.6.1.1	ko:K05873	ko00230,map00230	-	R00089,R00434	RC00295	ko00000,ko00001,ko01000	-	-	-	CYTH
DYD1_k127_153222_6	1444712.BN1013_01314	1.737e-06	56.0	COG0694@1|root,COG0822@1|root,COG0694@2|Bacteria,COG0822@2|Bacteria,2JFTX@204428|Chlamydiae	204428|Chlamydiae	CO	NifU protein	nifU	-	-	ko:K13819	-	-	-	-	ko00000	-	-	-	NifU,NifU_N
DYD1_k127_153222_2	765952.PUV_06960	2.424e-83	289.0	COG1104@1|root,COG1104@2|Bacteria,2JFKX@204428|Chlamydiae	204428|Chlamydiae	E	Aminotransferase class-V	yfhO_2	-	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD1_k127_153222_0	1444711.CCJF01000005_gene596	1.028e-87	295.0	COG0588@1|root,COG0588@2|Bacteria,2JFCZ@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate	gpmA	-	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	His_Phos_1
DYD1_k127_153222_1	331113.SNE_A03060	8.717e-85	287.0	COG1187@1|root,COG1187@2|Bacteria,2JFFS@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the pseudouridine synthase RsuA family	yjbC	-	5.4.99.22	ko:K06178	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD1_k127_153222_3	264201.pc0098	8.157e-68	237.0	COG1392@1|root,COG1392@2|Bacteria,2JFZT@204428|Chlamydiae	204428|Chlamydiae	P	Protein of unknown function DUF47	CP_0066	-	-	ko:K07220	-	-	-	-	ko00000	-	-	-	PhoU_div
DYD1_k127_153222_4	765952.PUV_06450	1.003e-40	153.0	COG0306@1|root,COG0306@2|Bacteria,2JFPI@204428|Chlamydiae	204428|Chlamydiae	P	Phosphate	CP_0067	-	-	ko:K03306	-	-	-	-	ko00000	2.A.20	-	-	PHO4
DYD1_k127_154188_4	716544.wcw_0099	9.731e-85	286.0	COG0320@1|root,COG0320@2|Bacteria,2JFWH@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	lipA	-	2.8.1.8	ko:K03644	ko00785,ko01100,map00785,map01100	-	R07767,R07768	RC01978	ko00000,ko00001,ko01000	-	-	-	LIAS_N,Radical_SAM
DYD1_k127_154188_1	765952.PUV_08690	1.108e-142	464.0	COG0448@1|root,COG0448@2|Bacteria,2JGPA@204428|Chlamydiae	204428|Chlamydiae	H	glucose-1-phosphate adenylyltransferase	glgC	-	2.7.7.27	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	M00565	R00948	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
DYD1_k127_154188_3	765952.PUV_08700	9.319e-94	313.0	COG1768@1|root,COG1768@2|Bacteria,2JFIA@204428|Chlamydiae	204428|Chlamydiae	S	Calcineurin-like phosphoesterase	CP_0141	-	-	ko:K07099	-	-	-	-	ko00000	-	-	-	Metallophos
DYD1_k127_154188_2	331113.SNE_A06540	7.09e-130	427.0	COG3659@1|root,COG3659@2|Bacteria	2|Bacteria	M	wide pore channel activity	-	-	-	ko:K07267	-	-	-	-	ko00000,ko02000	1.B.19.1	-	-	OprB
DYD1_k127_154188_5	765952.PUV_08020	2.96e-68	244.0	28PQ7@1|root,2ZCCC@2|Bacteria,2JFZ6@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_154188_6	765952.PUV_25620	0.0002845	49.0	2EJEX@1|root,33D5W@2|Bacteria,2JGJH@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_154188_0	331113.SNE_A01890	1.566e-164	529.0	COG1297@1|root,COG1297@2|Bacteria,2JHFP@204428|Chlamydiae	204428|Chlamydiae	S	OPT oligopeptide transporter protein	-	-	-	-	-	-	-	-	-	-	-	-	OPT
DYD1_k127_1577904_0	331113.SNE_A22200	1.449e-252	799.0	COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,2JFW6@204428|Chlamydiae	204428|Chlamydiae	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	polA	-	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	-	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1
DYD1_k127_1577904_3	331113.SNE_A22190	7.547e-90	307.0	COG0616@1|root,COG0616@2|Bacteria,2JFFW@204428|Chlamydiae	204428|Chlamydiae	OU	Peptidase family S49	sohB	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S49
DYD1_k127_1577904_6	1187848.AJYQ01000022_gene918	1.856e-45	175.0	COG0668@1|root,COG0668@2|Bacteria,1MXD2@1224|Proteobacteria,1RNUB@1236|Gammaproteobacteria,1XUER@135623|Vibrionales	135623|Vibrionales	M	COG0668 Small-conductance mechanosensitive channel	ynaI	-	-	ko:K16052	-	-	-	-	ko00000,ko02000	1.A.23.4	-	-	MS_channel
DYD1_k127_1577904_5	331113.SNE_A22140	1.307e-45	169.0	COG0558@1|root,COG0558@2|Bacteria,2JG6R@204428|Chlamydiae	204428|Chlamydiae	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pgsA_1	-	2.7.8.5	ko:K00995	ko00564,ko01100,map00564,map01100	-	R01801	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
DYD1_k127_1577904_4	765952.PUV_03590	1.226e-58	209.0	COG0586@1|root,COG0586@2|Bacteria,2JG5K@204428|Chlamydiae	204428|Chlamydiae	S	SNARE associated Golgi protein	-	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD1_k127_1577904_1	716544.wcw_1699	2.569e-174	561.0	COG3202@1|root,COG3202@2|Bacteria,2JFQD@204428|Chlamydiae	204428|Chlamydiae	P	ADP,ATP carrier protein	tlcA-C	-	-	ko:K03301	-	-	-	-	ko00000	2.A.12	-	-	TLC
DYD1_k127_1577904_2	765952.PUV_24700	2.968e-126	411.0	COG0126@1|root,COG0126@2|Bacteria,2JFK3@204428|Chlamydiae	204428|Chlamydiae	F	Belongs to the phosphoglycerate kinase family	pgk	-	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD1_k127_1582985_3	234831.PSM_A2755	3.64e-24	108.0	COG1280@1|root,COG1280@2|Bacteria,1RD4I@1224|Proteobacteria,1S52N@1236|Gammaproteobacteria,2Q14B@267888|Pseudoalteromonadaceae	1236|Gammaproteobacteria	E	threonine efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	LysE
DYD1_k127_1582985_0	1444711.CCJF01000005_gene801	2.752e-261	816.0	COG1274@1|root,COG1274@2|Bacteria,2JFEW@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle	pckG	-	4.1.1.32	ko:K01596	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko03320,ko04068,ko04151,ko04152,ko04910,ko04920,ko04922,ko04931,ko04964,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map03320,map04068,map04151,map04152,map04910,map04920,map04922,map04931,map04964	M00003	R00431,R00726	RC00002,RC02741	ko00000,ko00001,ko00002,ko01000	-	-	-	PEPCK_C,PEPCK_N
DYD1_k127_1582985_2	1444711.CCJF01000005_gene800	8.694e-201	629.0	COG1077@1|root,COG1077@2|Bacteria,2JFNV@204428|Chlamydiae	204428|Chlamydiae	D	shape-determining protein MreB	mreB	-	-	ko:K03569	-	-	-	-	ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1	-	-	MreB_Mbl
DYD1_k127_1582985_1	331113.SNE_A19580	7.482e-247	766.0	COG0553@1|root,COG4715@1|root,COG0553@2|Bacteria,COG4715@2|Bacteria,2JFDP@204428|Chlamydiae	204428|Chlamydiae	KL	SNF2 family	CP_1020	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,SNF2_N,SNF2_assoc,SWIM
DYD1_k127_1584108_4	1444712.BN1013_01493	9.451e-51	183.0	COG0847@1|root,COG0847@2|Bacteria,2JFVY@204428|Chlamydiae	204428|Chlamydiae	L	DNA polymerase III, epsilon	dnaQ_1	-	2.7.7.7	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	QSregVF_b,RNase_T
DYD1_k127_1584108_3	28072.Nos7524_5167	2.807e-60	218.0	COG0451@1|root,COG0451@2|Bacteria,1G0RF@1117|Cyanobacteria,1HIFQ@1161|Nostocales	1117|Cyanobacteria	GM	PFAM NAD dependent epimerase dehydratase family	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase,NAD_binding_10
DYD1_k127_1584108_5	765952.PUV_12360	3.47e-09	70.0	2DU2Q@1|root,33NPM@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1584108_0	331113.SNE_A08020	4.446e-255	801.0	COG1132@1|root,COG1132@2|Bacteria,2JFRB@204428|Chlamydiae	204428|Chlamydiae	V	Lipid A export ATP-binding permease protein	msbA	-	-	ko:K02021,ko:K06147,ko:K06148	-	-	-	-	ko00000,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD1_k127_1584108_1	331113.SNE_A08010	5.002e-138	446.0	COG0825@1|root,COG0825@2|Bacteria,2JFES@204428|Chlamydiae	204428|Chlamydiae	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
DYD1_k127_1584108_2	765952.PUV_13200	1.209e-96	321.0	COG1376@1|root,COG1376@2|Bacteria,2JFN1@204428|Chlamydiae	204428|Chlamydiae	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
DYD1_k127_1601267_0	765952.PUV_21180	1.349e-139	452.0	COG0474@1|root,COG0474@2|Bacteria,2JFV3@204428|Chlamydiae	204428|Chlamydiae	P	Cation transporter/ATPase, N-terminus	-	-	3.6.3.2	ko:K01531	-	-	-	-	ko00000,ko01000	3.A.3.4	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
DYD1_k127_1601267_1	765952.PUV_21180	3.51e-11	68.0	COG0474@1|root,COG0474@2|Bacteria,2JFV3@204428|Chlamydiae	204428|Chlamydiae	P	Cation transporter/ATPase, N-terminus	-	-	3.6.3.2	ko:K01531	-	-	-	-	ko00000,ko01000	3.A.3.4	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
DYD1_k127_164437_1	1168289.AJKI01000051_gene853	1.099e-117	385.0	COG0827@1|root,COG1002@1|root,COG0827@2|Bacteria,COG1002@2|Bacteria,4NEHR@976|Bacteroidetes,2FQ1D@200643|Bacteroidia,3XKD3@558415|Marinilabiliaceae	976|Bacteroidetes	LV	TaqI-like C-terminal specificity domain	-	-	-	-	-	-	-	-	-	-	-	-	Eco57I,N6_Mtase,TaqI_C
DYD1_k127_164437_6	293826.Amet_3370	6.021e-05	50.0	COG3620@1|root,COG3620@2|Bacteria,1VH02@1239|Firmicutes,24RIF@186801|Clostridia,36VX9@31979|Clostridiaceae	186801|Clostridia	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
DYD1_k127_164437_5	478741.JAFS01000002_gene198	7.625e-13	72.0	COG3549@1|root,COG3549@2|Bacteria	2|Bacteria	S	RelE-like toxin of type II toxin-antitoxin system HigB	-	-	-	-	-	-	-	-	-	-	-	-	HigB-like_toxin
DYD1_k127_164437_0	32057.KB217478_gene4768	1.094e-128	421.0	COG2856@1|root,COG3093@1|root,COG2856@2|Bacteria,COG3093@2|Bacteria,1G7WR@1117|Cyanobacteria,1HNZ0@1161|Nostocales	1117|Cyanobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	ko:K18831	-	-	-	-	ko00000,ko02048,ko03000	-	-	-	HTH_3,Peptidase_M78
DYD1_k127_164437_2	1192868.CAIU01000023_gene3291	1.926e-27	117.0	COG3600@1|root,COG3600@2|Bacteria,1N78U@1224|Proteobacteria,2UGBJ@28211|Alphaproteobacteria,43QMQ@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF4065)	gepA	-	-	-	-	-	-	-	-	-	-	-	DUF4065
DYD1_k127_1675093_6	716544.wcw_0142	3.149e-12	67.0	2AKRI@1|root,31BID@2|Bacteria,2JGD9@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1675093_4	331113.SNE_A11780	5.724e-30	125.0	2AUKY@1|root,31K9Q@2|Bacteria	2|Bacteria	S	Lipid A 3-O-deacylase (PagL)	-	-	-	-	-	-	-	-	-	-	-	-	PagL
DYD1_k127_1675093_2	331113.SNE_A11790	1.216e-93	317.0	COG0429@1|root,COG0429@2|Bacteria,2JH18@204428|Chlamydiae	204428|Chlamydiae	S	Alpha/beta hydrolase family	-	-	-	ko:K07019	-	-	-	-	ko00000	-	-	-	Abhydrolase_1
DYD1_k127_1675093_0	331113.SNE_A13060	3.309e-159	515.0	COG3202@1|root,COG3202@2|Bacteria,2JGM0@204428|Chlamydiae	204428|Chlamydiae	P	TLC ATP/ADP transporter	tlcA-B	-	-	-	-	-	-	-	-	-	-	-	TLC
DYD1_k127_1675093_5	1437425.CSEC_2125	1.367e-29	124.0	COG0537@1|root,COG0537@2|Bacteria,2JH6U@204428|Chlamydiae	204428|Chlamydiae	FG	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	-	-	-	ko:K02503	-	-	-	-	ko00000,ko04147	-	-	-	HIT
DYD1_k127_1675093_1	331113.SNE_A08280	5.963e-111	368.0	COG1398@1|root,COG1398@2|Bacteria,2JFP0@204428|Chlamydiae	204428|Chlamydiae	I	Fatty acid desaturase	-	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
DYD1_k127_1675093_3	202954.BBNK01000004_gene1907	1.751e-40	154.0	COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,1S5WI@1236|Gammaproteobacteria,3NN4E@468|Moraxellaceae	1236|Gammaproteobacteria	O	Belongs to the MsrB Met sulfoxide reductase family	msrB	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
DYD1_k127_1681876_0	272560.BPSS0422	2.815e-116	381.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2VJDZ@28216|Betaproteobacteria,1K1NS@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Belongs to the DegT DnrJ EryC1 family	-	-	2.6.1.102	ko:K13010	ko00520,map00520	-	R10460	RC00006,RC00781	ko00000,ko00001,ko01000,ko01005,ko01007	-	-	-	Acetyltransf_3,CBS,DegT_DnrJ_EryC1
DYD1_k127_1681876_2	1121382.JQKG01000010_gene4638	7.07e-91	306.0	COG3959@1|root,COG3959@2|Bacteria,1WMNT@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	G	PFAM Transketolase, thiamine diphosphate binding domain	-	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transketolase_N
DYD1_k127_1681876_1	1303518.CCALI_01668	6.778e-98	329.0	COG3958@1|root,COG3958@2|Bacteria	2|Bacteria	G	transketolase activity	tktC	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C
DYD1_k127_1681876_3	419665.Maeo_0390	5.048e-23	110.0	COG0463@1|root,arCOG01381@2157|Archaea,2Y22T@28890|Euryarchaeota,23RBM@183939|Methanococci	183939|Methanococci	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_1685152_8	1268622.AVS7_03745	1.158e-05	48.0	2DR1A@1|root,339RT@2|Bacteria,1NGFB@1224|Proteobacteria,2VXU8@28216|Betaproteobacteria,4AFZA@80864|Comamonadaceae	28216|Betaproteobacteria	S	Protein of unknown function (DUF3096)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3096
DYD1_k127_1685152_4	1232410.KI421428_gene1056	3.167e-83	282.0	COG1235@1|root,COG1235@2|Bacteria,1RIT2@1224|Proteobacteria,42SFE@68525|delta/epsilon subdivisions,2WPTA@28221|Deltaproteobacteria,43UMZ@69541|Desulfuromonadales	28221|Deltaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
DYD1_k127_1685152_7	765952.PUV_21010	1.986e-15	78.0	2ENCP@1|root,33G06@2|Bacteria,2JHC7@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1685152_6	765952.PUV_21010	9.558e-22	96.0	2ENCP@1|root,33G06@2|Bacteria,2JHC7@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1685152_3	765952.PUV_00570	4.922e-90	304.0	COG0109@1|root,COG0109@2|Bacteria,2JFWP@204428|Chlamydiae	204428|Chlamydiae	H	Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group	cyoE	-	2.5.1.141	ko:K02257	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714	M00154	R07411	RC01786	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029	-	-	-	UbiA
DYD1_k127_1685152_1	331113.SNE_A16230	1.426e-128	422.0	COG0513@1|root,COG0513@2|Bacteria,2JFPJ@204428|Chlamydiae	204428|Chlamydiae	L	Belongs to the DEAD box helicase family	-	-	3.6.4.13	ko:K05592	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019	-	-	-	DEAD,Helicase_C
DYD1_k127_1685152_0	331113.SNE_A17010	5.175e-206	672.0	COG0204@1|root,COG0236@1|root,COG0318@1|root,COG0204@2|Bacteria,COG0236@2|Bacteria,COG0318@2|Bacteria,2JFJE@204428|Chlamydiae	204428|Chlamydiae	IQ	AMP-binding enzyme	aas	-	6.2.1.20	ko:K01909	ko00071,map00071	-	R01406	RC00014,RC00039	ko00000,ko00001,ko01000	-	-	-	AMP-binding,Acyltransferase,PP-binding
DYD1_k127_1685152_2	1382359.JIAL01000001_gene2838	5.956e-92	309.0	KOG1573@1|root,2Z822@2|Bacteria,3Y3AN@57723|Acidobacteria,2JKNN@204432|Acidobacteriia	204432|Acidobacteriia	S	Myo-inositol oxygenase	-	-	1.13.99.1	ko:K00469	ko00053,ko00562,map00053,map00562	-	R01184	RC00465	ko00000,ko00001,ko01000	-	-	-	MIOX
DYD1_k127_1685691_1	331113.SNE_A23010	8.682e-126	410.0	COG0113@1|root,COG0113@2|Bacteria,2JFHF@204428|Chlamydiae	204428|Chlamydiae	H	Belongs to the ALAD family	hemB	-	4.2.1.24	ko:K01698	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00036	RC00918,RC01781	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ALAD
DYD1_k127_1685691_4	264201.pc1119	4.574e-43	168.0	COG0463@1|root,COG0463@2|Bacteria,2JG4U@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyltransferase family 92	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_92
DYD1_k127_1685691_3	1306947.ARQD01000001_gene899	2.222e-68	245.0	COG0457@1|root,COG0457@2|Bacteria	1306947.ARQD01000001_gene899|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1685691_5	331113.SNE_A23640	5.281e-08	63.0	2EQNW@1|root,347ZJ@2|Bacteria,2JHB0@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1685691_0	331113.SNE_A22990	7.805e-246	769.0	COG1351@1|root,COG1351@2|Bacteria,2JFK7@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	CP_1126	-	-	-	-	-	-	-	-	-	-	-	Thy1
DYD1_k127_1685691_2	331113.SNE_A22980	5.974e-82	282.0	COG0814@1|root,COG0814@2|Bacteria,2JFFY@204428|Chlamydiae	204428|Chlamydiae	E	Tryptophan/tyrosine permease family	tyrP_1	-	-	ko:K03834	-	-	-	-	ko00000,ko02000	2.A.42.1.1	-	-	Trp_Tyr_perm
DYD1_k127_1727394_1	1297581.H919_06706	1.359e-123	406.0	COG0451@1|root,COG0451@2|Bacteria,1TQV2@1239|Firmicutes,4HBXU@91061|Bacilli	91061|Bacilli	GM	Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction	fcl	-	1.1.1.271	ko:K02377	ko00051,ko00520,ko01100,map00051,map00520,map01100	-	R05692	RC01014	ko00000,ko00001,ko01000	-	-	-	Epimerase
DYD1_k127_1727394_3	331113.SNE_A16460	2.075e-61	219.0	292EW@1|root,2ZPZ5@2|Bacteria,2JG20@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1727394_0	765952.PUV_17070	3.359e-182	580.0	COG1875@1|root,COG1875@2|Bacteria,2JFG7@204428|Chlamydiae	204428|Chlamydiae	T	phosphate starvation-inducible protein PhoH	phoH	-	-	ko:K07175	-	-	-	-	ko00000	-	-	-	PIN_4,PhoH
DYD1_k127_1727394_5	1123257.AUFV01000001_gene1855	4.43e-16	83.0	COG5531@1|root,COG5531@2|Bacteria,1N3MD@1224|Proteobacteria,1SPRS@1236|Gammaproteobacteria,1XAQU@135614|Xanthomonadales	135614|Xanthomonadales	B	SWI complex, BAF60b domains	-	-	-	-	-	-	-	-	-	-	-	-	SWIB
DYD1_k127_1727394_7	1321815.HMPREF9193_00022	4.329e-06	51.0	COG3774@1|root,COG3774@2|Bacteria,2J5VN@203691|Spirochaetes	203691|Spirochaetes	M	Glycosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Gly_transf_sug
DYD1_k127_1727394_4	653948.CCA15666	2.049e-30	128.0	COG3774@1|root,2S4FC@2759|Eukaryota	2759|Eukaryota	M	Glycosyltransferase sugar-binding region containing DXD motif	-	-	-	-	-	-	-	-	-	-	-	-	Gly_transf_sug
DYD1_k127_1727394_2	1297581.H919_06091	9.747e-100	342.0	COG1215@1|root,COG1215@2|Bacteria,1TR2P@1239|Firmicutes,4HAQN@91061|Bacilli,21WIX@150247|Anoxybacillus	91061|Bacilli	M	Glycosyl transferase family group 2	icaA	-	-	-	-	-	-	-	-	-	-	-	Chitin_synth_2,Glyco_tranf_2_3,Glyco_trans_2_3,Glycos_transf_2
DYD1_k127_1727394_8	65393.PCC7424_1391	0.0002096	46.0	COG1413@1|root,COG1413@2|Bacteria,1G528@1117|Cyanobacteria,3KHZP@43988|Cyanothece	1117|Cyanobacteria	C	PBS lyase HEAT domain protein repeat-containing protein	-	-	-	-	-	-	-	-	-	-	-	-	HEAT_2
DYD1_k127_1771409_2	1444712.BN1013_01711	2.908e-36	141.0	COG0664@1|root,COG0664@2|Bacteria	2|Bacteria	T	cyclic nucleotide binding	CP_0464	-	-	ko:K01999,ko:K07001	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	HTH_Crp_2,cNMP_binding
DYD1_k127_1771409_0	1444712.BN1013_01712	2.111e-175	584.0	COG3202@1|root,COG3202@2|Bacteria	2|Bacteria	C	ATP:ADP antiporter activity	CP_0465	-	-	-	-	-	-	-	-	-	-	-	HEAT_2,TLC,cNMP_binding
DYD1_k127_1771409_3	1158318.ATXC01000001_gene672	3.066e-35	145.0	COG0345@1|root,COG0345@2|Bacteria,2G42Q@200783|Aquificae	200783|Aquificae	E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	proC	-	1.5.1.2	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	M00015	R01248,R01251,R03291,R03293	RC00054,RC00083	ko00000,ko00001,ko00002,ko01000	-	-	-	F420_oxidored,P5CR_dimer
DYD1_k127_1771409_1	1444711.CCJF01000005_gene1342	3.905e-149	477.0	COG0492@1|root,COG0492@2|Bacteria,2JFQH@204428|Chlamydiae	204428|Chlamydiae	C	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family	trxB	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD1_k127_1771409_4	1444711.CCJF01000005_gene1343	1.226e-09	64.0	2CP5R@1|root,33T3X@2|Bacteria,2JGYC@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1778970_1	331113.SNE_A20160	2.075e-22	102.0	2EE6N@1|root,33817@2|Bacteria,2JGGF@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1778970_2	69319.XP_008556026.1	3.243e-07	62.0	KOG1987@1|root,KOG1987@2759|Eukaryota,38DSA@33154|Opisthokonta,3BFGK@33208|Metazoa,3CR5U@33213|Bilateria,41UVD@6656|Arthropoda,3SKER@50557|Insecta,46GG0@7399|Hymenoptera	33208|Metazoa	D	Speckle-type POZ protein	-	-	-	ko:K10523	ko04340,ko04341,map04340,map04341	M00384	-	-	ko00000,ko00001,ko00002,ko04121	-	-	-	BTB
DYD1_k127_1778970_0	765952.PUV_17750	1.994e-57	203.0	COG1610@1|root,COG1610@2|Bacteria,2JH0E@204428|Chlamydiae	204428|Chlamydiae	S	Yqey-like protein	-	-	-	ko:K09117	-	-	-	-	ko00000	-	-	-	YqeY
DYD1_k127_1824665_1	716544.wcw_0575	1.827e-48	180.0	COG1413@1|root,COG1413@2|Bacteria,2JFPT@204428|Chlamydiae	204428|Chlamydiae	C	lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	HEAT_2
DYD1_k127_1824665_0	716544.wcw_0579	1.35e-123	408.0	COG0006@1|root,COG0006@2|Bacteria,2JFCK@204428|Chlamydiae	204428|Chlamydiae	E	Metallopeptidase family M24	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M24
DYD1_k127_1824665_2	264201.pc0592	3.617e-33	132.0	COG2166@1|root,COG2166@2|Bacteria,2JG8A@204428|Chlamydiae	204428|Chlamydiae	S	Fe-S metabolism associated domain	sufE	-	-	ko:K02426	-	-	-	-	ko00000	-	-	-	SufE
DYD1_k127_1824665_3	331113.SNE_A15200	7.902e-19	87.0	COG0361@1|root,COG0361@2|Bacteria,2JG9T@204428|Chlamydiae	204428|Chlamydiae	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex	infA	-	-	ko:K02518	-	-	-	-	ko00000,ko03012	-	-	-	eIF-1a
DYD1_k127_1825756_0	331113.SNE_A09530	1.461e-122	397.0	COG0364@1|root,COG0364@2|Bacteria,2JFEN@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	zwf	-	1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	G6PD_C,G6PD_N
DYD1_k127_1825756_1	331113.SNE_A09520	1.973e-80	280.0	COG3429@1|root,COG3429@2|Bacteria,2JG6P@204428|Chlamydiae	204428|Chlamydiae	G	Glucose-6-phosphate dehydrogenase subunit	-	-	-	-	-	-	-	-	-	-	-	-	OpcA_G6PD_assem
DYD1_k127_1825756_2	331113.SNE_A09510	1.316e-67	236.0	COG0363@1|root,COG0363@2|Bacteria,2JFZ0@204428|Chlamydiae	204428|Chlamydiae	G	6-phosphogluconolactonase	pgl	-	3.1.1.31	ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R02035	RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
DYD1_k127_1887081_3	331113.SNE_A01140	2.807e-06	51.0	COG2304@1|root,COG2304@2|Bacteria	2|Bacteria	IU	oxidoreductase activity	yabS	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	VIT,VWA,VWA_2
DYD1_k127_1887081_1	1437425.CSEC_1667	8.808e-36	142.0	COG0742@1|root,COG0742@2|Bacteria,2JG8V@204428|Chlamydiae	204428|Chlamydiae	L	Conserved hypothetical protein 95	yhhF	-	-	-	-	-	-	-	-	-	-	-	Cons_hypoth95
DYD1_k127_1887081_2	1122218.KB893653_gene1180	4.305e-35	139.0	COG0669@1|root,COG0669@2|Bacteria,1RD9F@1224|Proteobacteria,2U74H@28211|Alphaproteobacteria,1JRY3@119045|Methylobacteriaceae	28211|Alphaproteobacteria	H	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	coaD	-	2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
DYD1_k127_1887081_0	765952.PUV_25720	6.371e-162	541.0	COG2849@1|root,COG2849@2|Bacteria,2JGQS@204428|Chlamydiae	204428|Chlamydiae	S	MORN repeat variant	-	-	-	-	-	-	-	-	-	-	-	-	MORN_2
DYD1_k127_1887081_4	157072.XP_008862557.1	5.226e-05	54.0	2BZVS@1|root,2STBM@2759|Eukaryota	2759|Eukaryota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1901704_1	331113.SNE_A07910	1.718e-64	228.0	COG0120@1|root,COG0120@2|Bacteria,2JG19@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate	rpiA	-	5.3.1.6	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167,M00580	R01056	RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	Rib_5-P_isom_A
DYD1_k127_1901704_0	161934.XP_010683748.1	1.11e-137	449.0	COG0162@1|root,KOG2623@2759|Eukaryota,37RBV@33090|Viridiplantae,3G73P@35493|Streptophyta	35493|Streptophyta	J	Tyrosyl-tRNA synthetase	-	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.1.1.1	ko:K01866	ko00970,map00970	M00359,M00360	R02918	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	S4,tRNA-synt_1b
DYD1_k127_1901704_2	716544.wcw_1333	6.433e-42	157.0	COG0776@1|root,COG0776@2|Bacteria,2JG67@204428|Chlamydiae	204428|Chlamydiae	L	Belongs to the bacterial histone-like protein family	ihfA	-	-	-	-	-	-	-	-	-	-	-	Bac_DNA_binding
DYD1_k127_1901704_4	765952.PUV_13190	6.431e-07	60.0	2CHFT@1|root,341UR@2|Bacteria,2JH4I@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1911041_0	765952.PUV_21030	1.752e-144	472.0	COG0841@1|root,COG0841@2|Bacteria,2JFQA@204428|Chlamydiae	204428|Chlamydiae	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	acrB	-	-	ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD1_k127_1911041_1	765952.PUV_21020	1.158e-27	117.0	COG1538@1|root,COG1538@2|Bacteria,2JFMS@204428|Chlamydiae	204428|Chlamydiae	MU	Outer membrane efflux protein	-	-	-	ko:K18139	ko01501,ko02024,map01501,map02024	M00642,M00643,M00647,M00718,M00768,M00822	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	1.B.17,2.A.6.2	-	-	OEP
DYD1_k127_1986680_7	1034345.CAEM01000036_gene574	2.371e-25	109.0	COG0283@1|root,COG0283@2|Bacteria,2H3SI@201174|Actinobacteria,4CV84@84998|Coriobacteriia	84998|Coriobacteriia	F	Belongs to the cytidylate kinase family. Type 1 subfamily	cmk	-	2.7.4.25	ko:K00945	ko00240,ko01100,map00240,map01100	M00052	R00158,R00512,R01665	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyltransferase,Cytidylate_kin
DYD1_k127_1986680_6	331113.SNE_A21750	1.901e-58	213.0	COG4589@1|root,COG4589@2|Bacteria,2JHI7@204428|Chlamydiae	204428|Chlamydiae	S	Cytidylyltransferase family	cdsA	-	2.7.7.41	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	M00093	R01799	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_1
DYD1_k127_1986680_4	331113.SNE_A21760	6.766e-85	288.0	COG0020@1|root,COG0020@2|Bacteria,2JFZ2@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	uppS	-	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110	-	R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006	-	-	-	Prenyltransf
DYD1_k127_1986680_2	716544.wcw_0315	1.116e-147	481.0	COG0104@1|root,COG0104@2|Bacteria,2JFRZ@204428|Chlamydiae	204428|Chlamydiae	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	purA	-	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000	-	-	-	Adenylsucc_synt
DYD1_k127_1986680_0	331113.SNE_A21850	0.0	1356.0	COG0341@1|root,COG0342@1|root,COG0341@2|Bacteria,COG0342@2|Bacteria,2JFRC@204428|Chlamydiae	204428|Chlamydiae	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secD	-	-	ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4	-	-	SecD_SecF
DYD1_k127_1986680_5	1034943.BN1094_03646	3.783e-80	292.0	COG2114@1|root,COG2114@2|Bacteria,1RBTC@1224|Proteobacteria,1S09F@1236|Gammaproteobacteria,1JE71@118969|Legionellales	118969|Legionellales	T	Cache domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc,dCache_1
DYD1_k127_1986680_1	331113.SNE_A21860	1.903e-236	743.0	COG0608@1|root,COG0608@2|Bacteria,2JFK9@204428|Chlamydiae	204428|Chlamydiae	L	exonuclease recJ	recJ	-	-	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DHH,DHHA1
DYD1_k127_1986680_3	331113.SNE_A03430	7.097e-90	317.0	COG2831@1|root,COG2831@2|Bacteria	2|Bacteria	U	hemolysin activation secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	POTRA,POTRA_2,ShlB
DYD1_k127_1986919_0	1444712.BN1013_00834	1.35e-124	407.0	COG2801@1|root,COG2801@2|Bacteria,2JHEV@204428|Chlamydiae	204428|Chlamydiae	L	Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	HTH_21,rve
DYD1_k127_1986919_1	1444712.BN1013_00835	5.248e-35	136.0	COG2963@1|root,COG2963@2|Bacteria	2|Bacteria	L	transposase activity	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
DYD1_k127_1986919_2	192952.MM_0250	7.302e-05	46.0	COG3436@1|root,arCOG04792@2157|Archaea,2XTVF@28890|Euryarchaeota	28890|Euryarchaeota	L	COG3436 Transposase and inactivated derivatives	-	-	-	ko:K07484	-	-	-	-	ko00000	-	-	-	DDE_Tnp_IS66,SlyX,zf-IS66
DYD1_k127_1991799_7	331113.SNE_A03570	3.644e-17	83.0	COG0597@1|root,COG0597@2|Bacteria,2JG71@204428|Chlamydiae	204428|Chlamydiae	MU	This protein specifically catalyzes the removal of signal peptides from prolipoproteins	lspA	-	3.4.23.36	ko:K03101	ko03060,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_A8
DYD1_k127_1991799_5	1444711.CCJF01000005_gene146	6.592e-53	194.0	2B2S9@1|root,31VCJ@2|Bacteria,2JG87@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1991799_6	331113.SNE_A03590	1.439e-40	158.0	COG1058@1|root,COG1546@1|root,COG1058@2|Bacteria,COG1546@2|Bacteria,2JFK1@204428|Chlamydiae	204428|Chlamydiae	S	Probable molybdopterin binding domain	cinA	-	3.5.1.42	ko:K03742	ko00760,map00760	-	R02322	RC00100	ko00000,ko00001,ko01000	-	-	-	CinA,MoCF_biosynth
DYD1_k127_1991799_1	1444711.CCJF01000005_gene137	6.615e-101	336.0	COG1092@1|root,COG1092@2|Bacteria,2JFQ3@204428|Chlamydiae	204428|Chlamydiae	H	S-adenosylmethionine-dependent methyltransferase	CP_0221	-	2.1.1.191	ko:K06969	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_SAM
DYD1_k127_1991799_0	765952.PUV_26920	4.839e-109	359.0	COG0566@1|root,COG0566@2|Bacteria,2JFQK@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family	spoU_1	-	-	ko:K03437	-	-	-	-	ko00000,ko03016	-	-	-	SpoU_methylase,SpoU_sub_bind
DYD1_k127_1991799_4	331113.SNE_A03620	3.43e-59	212.0	COG0564@1|root,COG0564@2|Bacteria,2JG1U@204428|Chlamydiae	204428|Chlamydiae	J	RNA pseudouridylate synthase	-	-	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2
DYD1_k127_1991799_8	5808.XP_002141058.1	3.897e-08	62.0	KOG1674@1|root,KOG1674@2759|Eukaryota,3YBIN@5794|Apicomplexa,3YMZB@5796|Coccidia	5794|Apicomplexa	D	Cyclin	-	-	-	-	-	-	-	-	-	-	-	-	Cyclin
DYD1_k127_1991799_2	755178.Cyan10605_0019	2.283e-91	311.0	COG0136@1|root,COG0136@2|Bacteria,1G0E6@1117|Cyanobacteria	1117|Cyanobacteria	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	asd	-	1.2.1.11	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R02291	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
DYD1_k127_1991799_3	1444711.CCJF01000005_gene130	3.158e-66	231.0	COG0279@1|root,COG0279@2|Bacteria,2JFXT@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate	gmhA	-	5.3.1.28	ko:K03271	ko00540,ko01100,map00540,map01100	M00064	R05645,R09768,R09769	RC00434	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	SIS_2
DYD1_k127_1994251_1	908340.HMPREF9406_1026	8.062e-06	55.0	2E9NX@1|root,333VC@2|Bacteria,1VFKV@1239|Firmicutes	1239|Firmicutes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1994251_0	1033806.HTIA_1260	1.403e-50	190.0	COG3568@1|root,arCOG08107@2157|Archaea,2XWUM@28890|Euryarchaeota,23VI9@183963|Halobacteria	183963|Halobacteria	L	COG3568 Metal-dependent hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Exo_endo_phos
DYD1_k127_1996277_2	331113.SNE_A15960	1.469e-104	353.0	28N6X@1|root,2ZBBQ@2|Bacteria,2JFR2@204428|Chlamydiae	204428|Chlamydiae	S	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_1996277_6	765952.PUV_18030	0.0002688	44.0	COG1961@1|root,COG1961@2|Bacteria,2JGRW@204428|Chlamydiae	204428|Chlamydiae	L	Resolvase, N terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Resolvase,Zn_ribbon_recom
DYD1_k127_1996277_5	1121447.JONL01000001_gene735	6.44e-05	49.0	2EG8N@1|root,33A0G@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_1996277_4	589865.DaAHT2_1054	2.806e-08	58.0	COG3012@1|root,COG3012@2|Bacteria,1QZ4P@1224|Proteobacteria	1224|Proteobacteria	C	Pfam SEC-C motif	-	-	-	-	-	-	-	-	-	-	-	-	SEC-C
DYD1_k127_1996277_1	1444711.CCJF01000005_gene1714	2.588e-108	355.0	COG0037@1|root,COG0037@2|Bacteria,2JFSJ@204428|Chlamydiae	204428|Chlamydiae	H	Belongs to the TtcA family	ttcA	-	-	-	-	-	-	-	-	-	-	-	ATP_bind_3
DYD1_k127_1996277_0	331113.SNE_A06000	3.994e-154	501.0	COG0591@1|root,COG0591@2|Bacteria,2JFMA@204428|Chlamydiae	204428|Chlamydiae	E	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	putP	-	-	ko:K11928	-	-	-	-	ko00000,ko02000	2.A.21.2	-	-	SSF
DYD1_k127_1996277_3	765952.PUV_19370	1.991e-46	171.0	COG0496@1|root,COG0496@2|Bacteria,2JFU0@204428|Chlamydiae	204428|Chlamydiae	F	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	surE	-	3.1.3.5	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	SurE
DYD1_k127_2049989_4	331635.G5S_0889	6.463e-09	58.0	COG0621@1|root,COG0621@2|Bacteria,2JFRX@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12	rimO	-	2.8.4.4	ko:K14441	-	-	R10652	RC00003,RC03217	ko00000,ko01000,ko03009	-	-	-	Radical_SAM,UPF0004
DYD1_k127_2049989_0	331113.SNE_A11630	2.191e-111	367.0	COG0601@1|root,COG0601@2|Bacteria,2JFFJ@204428|Chlamydiae	204428|Chlamydiae	P	permease protein	oppB	-	-	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	BPD_transp_1
DYD1_k127_2049989_1	331113.SNE_A11620	1.504e-104	346.0	COG1173@1|root,COG1173@2|Bacteria,2JFP9@204428|Chlamydiae	204428|Chlamydiae	P	ABC transporter (permease)	oppC	-	-	ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	BPD_transp_1,OppC_N
DYD1_k127_2049989_2	1121346.KB899816_gene3300	3.225e-91	309.0	COG0444@1|root,COG0444@2|Bacteria,1TP6E@1239|Firmicutes,4HA4E@91061|Bacilli,274NZ@186822|Paenibacillaceae	91061|Bacilli	P	Belongs to the ABC transporter superfamily	oppD2	-	-	ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
DYD1_k127_2049989_3	717605.Theco_0045	1.377e-67	237.0	COG4608@1|root,COG4608@2|Bacteria,1V36J@1239|Firmicutes,4H9YB@91061|Bacilli,26QEH@186822|Paenibacillaceae	91061|Bacilli	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02032,ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
DYD1_k127_2054055_0	1444711.CCJF01000005_gene1323	5.814e-108	354.0	COG0508@1|root,COG0508@2|Bacteria,2JFHR@204428|Chlamydiae	204428|Chlamydiae	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhC	-	2.3.1.12	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	M00307	R00209,R02569	RC00004,RC02742,RC02857	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
DYD1_k127_2054055_1	331113.SNE_A00770	5.823e-20	98.0	2EQNW@1|root,33I8U@2|Bacteria,2JGJ8@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2054055_2	1437425.CSEC_1422	1.394e-13	79.0	2EQNW@1|root,33I8U@2|Bacteria,2JGJ8@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2054055_3	1437425.CSEC_1422	2.581e-12	72.0	2EQNW@1|root,33I8U@2|Bacteria,2JGJ8@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2062690_0	1415778.JQMM01000001_gene260	7.752e-179	571.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,1RMWA@1236|Gammaproteobacteria,1J4I6@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	JKL	DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA	rhlE	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0042254,GO:0042255,GO:0042623,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0065003,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:1901360	3.6.4.13	ko:K11927	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	DEAD,Helicase_C
DYD1_k127_2062690_2	4792.ETI31134	1.224e-21	104.0	KOG1947@1|root,KOG1947@2759|Eukaryota,3QCMI@4776|Peronosporales	4776|Peronosporales	S	Leucine-rich repeat - CC (cysteine-containing) subfamily	-	-	-	ko:K10279,ko:K10280	-	-	-	-	ko00000,ko04121	-	-	-	LRR_6
DYD1_k127_2062690_1	765952.PUV_03460	6.779e-139	479.0	2C4IS@1|root,2Z81U@2|Bacteria	2|Bacteria	S	Lantibiotic dehydratase, C terminus	spaB	-	-	ko:K20483	ko02020,ko02024,map02020,map02024	-	-	-	ko00000,ko00001	-	-	-	Lant_dehydr_C,Lant_dehydr_N
DYD1_k127_2062690_3	1121957.ATVL01000009_gene900	4.221e-18	86.0	COG1028@1|root,COG1028@2|Bacteria,4NIH6@976|Bacteroidetes,47MQG@768503|Cytophagia	976|Bacteroidetes	IQ	PFAM Short-chain dehydrogenase reductase SDR	-	-	1.1.1.69	ko:K00046	-	-	-	-	ko00000,ko01000	-	-	-	adh_short_C2
DYD1_k127_2063175_0	331113.SNE_A17070	7.128e-151	482.0	COG0304@1|root,COG0304@2|Bacteria,2JFJJ@204428|Chlamydiae	204428|Chlamydiae	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	fabF	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD1_k127_2063175_2	716544.wcw_1375	1.89e-38	147.0	COG0799@1|root,COG0799@2|Bacteria,2JGA1@204428|Chlamydiae	204428|Chlamydiae	J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation	rsfS	-	-	ko:K09710	-	-	-	-	ko00000,ko03009	-	-	-	RsfS
DYD1_k127_2063175_3	331113.SNE_A17090	5.209e-37	146.0	COG1057@1|root,COG1057@2|Bacteria,2JG9K@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)	nadD	-	2.7.7.18	ko:K00969	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
DYD1_k127_2063175_4	1437425.CSEC_0744	9.578e-24	115.0	COG3968@1|root,COG3968@2|Bacteria,2JFSK@204428|Chlamydiae	204428|Chlamydiae	S	Glutamine synthetase, catalytic domain	glnA	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	GSIII_N,Gln-synt_C
DYD1_k127_2063175_1	1444711.CCJF01000005_gene1066	8.672e-120	402.0	COG1196@1|root,COG1196@2|Bacteria,2JFK2@204428|Chlamydiae	204428|Chlamydiae	D	nuclear chromosome segregation	CP_0954	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2067659_1	1047013.AQSP01000103_gene1154	1.324e-39	155.0	COG5340@1|root,COG5340@2|Bacteria	2|Bacteria	K	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_4
DYD1_k127_2067659_0	1047013.AQSP01000103_gene1153	1.89e-83	286.0	COG2253@1|root,COG2253@2|Bacteria	2|Bacteria	V	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	AbiEii
DYD1_k127_2067659_2	203124.Tery_1485	7.902e-37	147.0	COG4122@1|root,COG4122@2|Bacteria,1G8BJ@1117|Cyanobacteria	1117|Cyanobacteria	S	O-methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
DYD1_k127_2074301_0	716544.wcw_0034	7.722e-81	287.0	COG0507@1|root,COG0507@2|Bacteria,2JFVA@204428|Chlamydiae	204428|Chlamydiae	L	ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member	recD1	-	3.1.11.5	ko:K03581	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	AAA_30,UvrD_C_2
DYD1_k127_2074301_1	331113.SNE_A04420	6.276e-20	92.0	COG2271@1|root,COG2271@2|Bacteria	2|Bacteria	G	transmembrane transporter activity	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_209852_2	316058.RPB_3809	4.639e-39	146.0	COG0500@1|root,COG2226@2|Bacteria,1QSZ6@1224|Proteobacteria,2UMB9@28211|Alphaproteobacteria,3K60Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methionine biosynthesis protein MetW	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD1_k127_209852_0	1121033.AUCF01000009_gene1169	2.818e-118	389.0	COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,2JR3C@204441|Rhodospirillales	28211|Alphaproteobacteria	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily	rfbB	-	4.2.1.46,4.2.1.76,5.1.3.2	ko:K01710,ko:K01784,ko:K12450	ko00052,ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00052,map00520,map00521,map00523,map00525,map01055,map01100,map01130	M00361,M00362,M00632,M00793	R00291,R00293,R02984,R06513	RC00289,RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD1_k127_209852_1	697282.Mettu_1299	1.9e-101	344.0	COG0615@1|root,COG2870@1|root,COG0615@2|Bacteria,COG2870@2|Bacteria,1R7DJ@1224|Proteobacteria,1SZ00@1236|Gammaproteobacteria	1236|Gammaproteobacteria	H	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose	-	-	-	-	-	-	-	-	-	-	-	-	CTP_transf_like,PfkB
DYD1_k127_2144688_0	765952.PUV_24140	3.744e-10	61.0	COG1480@1|root,COG1480@2|Bacteria,2JFF5@204428|Chlamydiae	204428|Chlamydiae	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	yqfF	-	-	ko:K07037	-	-	-	-	ko00000	-	-	-	7TM-7TMR_HD,7TMR-HDED,HD
DYD1_k127_2144688_1	877455.Metbo_1416	3.578e-06	49.0	COG0225@1|root,arCOG02816@2157|Archaea,2XWKA@28890|Euryarchaeota,23P6F@183925|Methanobacteria	183925|Methanobacteria	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	msrA	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
DYD1_k127_2151698_0	331113.SNE_A11000	3.289e-15	88.0	COG1357@1|root,COG2071@1|root,COG1357@2|Bacteria,COG2071@2|Bacteria,2JHGT@204428|Chlamydiae	204428|Chlamydiae	S	Peptidase C26	-	-	-	ko:K07010	-	-	-	-	ko00000,ko01002	-	-	-	Peptidase_C26
DYD1_k127_2159783_7	1437425.CSEC_2349	6.81e-56	201.0	COG0604@1|root,COG0604@2|Bacteria,2JFI9@204428|Chlamydiae	204428|Chlamydiae	C	Zinc-binding dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N_2
DYD1_k127_2159783_6	765952.PUV_15690	1.671e-73	257.0	COG1216@1|root,COG1216@2|Bacteria,2JGWW@204428|Chlamydiae	204428|Chlamydiae	S	Glycosyl transferase, family 2	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2159783_8	55529.EKX43421	1.393e-40	161.0	2EUZ0@1|root,2SX1J@2759|Eukaryota	2759|Eukaryota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2159783_10	331113.SNE_A23270	2.983e-22	102.0	COG0212@1|root,COG0212@2|Bacteria,2JGFC@204428|Chlamydiae	204428|Chlamydiae	H	5-formyltetrahydrofolate cyclo-ligase family	-	-	6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100	-	R02301	RC00183	ko00000,ko00001,ko01000	-	-	-	5-FTHF_cyc-lig
DYD1_k127_2159783_4	264201.pc1991	2.225e-90	312.0	COG2849@1|root,COG2849@2|Bacteria,2JFW2@204428|Chlamydiae	204428|Chlamydiae	S	MORN repeat variant	CP_1108	-	-	-	-	-	-	-	-	-	-	-	MORN_2
DYD1_k127_2159783_15	765952.PUV_00210	2.405e-05	54.0	28PTN@1|root,2ZCEV@2|Bacteria,2JFZY@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2159783_9	765952.PUV_00220	1.313e-25	122.0	COG4972@1|root,COG4972@2|Bacteria,2JFIK@204428|Chlamydiae	204428|Chlamydiae	NU	Pilus assembly protein	-	-	-	ko:K02662	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	PilM_2
DYD1_k127_2159783_11	331113.SNE_A23310	1.46e-20	93.0	COG0762@1|root,COG0762@2|Bacteria,2JGD3@204428|Chlamydiae	204428|Chlamydiae	S	YGGT family	ylmG	-	-	ko:K02221	-	-	-	-	ko00000,ko02044	-	-	-	YGGT
DYD1_k127_2159783_2	716544.wcw_1972	1.343e-137	445.0	COG0042@1|root,COG0042@2|Bacteria,2JFI0@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	dusB	-	-	ko:K05540	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
DYD1_k127_2159783_13	639282.DEFDS_0637	1.204e-16	82.0	COG1254@1|root,COG1254@2|Bacteria,2GG1J@200930|Deferribacteres	200930|Deferribacteres	C	Acylphosphatase	-	-	3.6.1.7	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	-	R00317,R01421,R01515	RC00043	ko00000,ko00001,ko01000	-	-	-	Acylphosphatase
DYD1_k127_2159783_14	331113.SNE_A23150	1.633e-16	85.0	COG3688@1|root,COG3688@2|Bacteria,2JGDZ@204428|Chlamydiae	204428|Chlamydiae	S	YacP-like NYN domain	-	-	-	ko:K06962	-	-	-	-	ko00000	-	-	-	NYN_YacP
DYD1_k127_2159783_5	1444712.BN1013_00412	6.291e-75	257.0	COG0127@1|root,COG0127@2|Bacteria,2JG0G@204428|Chlamydiae	204428|Chlamydiae	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions	yggV	-	3.6.1.66	ko:K02428	ko00230,map00230	-	R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000	-	-	-	Ham1p_like
DYD1_k127_2159783_0	331113.SNE_A23130	5.385e-259	818.0	COG0782@1|root,COG1747@1|root,COG0782@2|Bacteria,COG1747@2|Bacteria,2JFR7@204428|Chlamydiae	204428|Chlamydiae	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	-	-	-	-	-	-	-	-	-	-	-	GreA_GreB,GreA_GreB_N
DYD1_k127_2159783_1	331113.SNE_A23030	9.501e-233	740.0	COG0671@1|root,COG0671@2|Bacteria,2JFG9@204428|Chlamydiae	204428|Chlamydiae	I	Exopolysaccharide biosynthesis protein YbjH	-	-	-	-	-	-	-	-	-	-	-	-	YjbH
DYD1_k127_2159783_3	697282.Mettu_3431	1.272e-109	364.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,1RN2C@1236|Gammaproteobacteria,1XEHC@135618|Methylococcales	135618|Methylococcales	P	haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	E1-E2_ATPase,Hydrolase
DYD1_k127_2219553_1	1437425.CSEC_2019	1.214e-87	297.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,2JGR0@204428|Chlamydiae	204428|Chlamydiae	H	Pyruvate phosphate dikinase, PEP/pyruvate binding domain	ppsA	-	2.7.9.1,2.7.9.2	ko:K01006,ko:K01007	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173,M00374	R00199,R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PEP-utilizers_C,PPDK_N
DYD1_k127_2219553_3	1437425.CSEC_2221	1.652e-58	209.0	COG0125@1|root,COG0125@2|Bacteria,2JG2V@204428|Chlamydiae	204428|Chlamydiae	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis	tmk	-	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylate_kin
DYD1_k127_2219553_4	264201.pc1072	6.325e-50	190.0	COG0470@1|root,COG0470@2|Bacteria,2JGB3@204428|Chlamydiae	204428|Chlamydiae	L	DNA polymerase III	holB	-	2.7.7.7	ko:K02341,ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2
DYD1_k127_2219553_5	161934.XP_010690834.1	0.0003426	52.0	2BZER@1|root,2QPQI@2759|Eukaryota,37MJF@33090|Viridiplantae,3GBM8@35493|Streptophyta	35493|Streptophyta	O	protein binding zinc ion binding	-	-	-	-	-	-	-	-	-	-	-	-	zf-RING_2
DYD1_k127_2219553_2	331113.SNE_A08870	1.196e-85	291.0	COG0061@1|root,COG0061@2|Bacteria,2JFSA@204428|Chlamydiae	204428|Chlamydiae	F	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP	ppnK	-	2.7.1.23	ko:K00858	ko00760,ko01100,map00760,map01100	-	R00104	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	NAD_kinase
DYD1_k127_2219553_0	1444711.CCJF01000005_gene1379	2.001e-237	745.0	COG1154@1|root,COG1154@2|Bacteria,2JFSC@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)	dxs	-	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000	-	-	-	DXP_synthase_N,Transket_pyr,Transketolase_C
DYD1_k127_2228077_0	331113.SNE_A01910	9.688e-73	263.0	28PQ7@1|root,2ZCCC@2|Bacteria,2JFZ6@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2235642_0	1449063.JMLS01000001_gene4412	1.774e-44	178.0	COG0477@1|root,COG2814@2|Bacteria,1TPRN@1239|Firmicutes,4ISP7@91061|Bacilli,26QDV@186822|Paenibacillaceae	91061|Bacilli	EGP	Major facilitator superfamily	yhcA1	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_2235642_2	2880.D7FSQ5	4.664e-37	159.0	COG0076@1|root,KOG1383@2759|Eukaryota	2759|Eukaryota	E	sphinganine-1-phosphate aldolase activity	SGPL1	GO:0000003,GO:0001501,GO:0001553,GO:0001568,GO:0001570,GO:0001655,GO:0001667,GO:0001822,GO:0001944,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005938,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007283,GO:0007525,GO:0007527,GO:0007548,GO:0008064,GO:0008117,GO:0008150,GO:0008152,GO:0008202,GO:0008209,GO:0008210,GO:0008219,GO:0008406,GO:0008584,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009791,GO:0009887,GO:0009987,GO:0009991,GO:0010171,GO:0010646,GO:0010761,GO:0010817,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016477,GO:0016829,GO:0016830,GO:0016832,GO:0019722,GO:0019725,GO:0019752,GO:0019932,GO:0019953,GO:0022414,GO:0022602,GO:0023052,GO:0030003,GO:0030029,GO:0030036,GO:0030097,GO:0030148,GO:0030149,GO:0030154,GO:0030176,GO:0030435,GO:0030587,GO:0030832,GO:0030833,GO:0031156,GO:0031157,GO:0031158,GO:0031224,GO:0031227,GO:0031272,GO:0031273,GO:0031275,GO:0031276,GO:0031344,GO:0031345,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0032101,GO:0032104,GO:0032107,GO:0032271,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032541,GO:0032787,GO:0032956,GO:0032970,GO:0033043,GO:0033327,GO:0033554,GO:0034641,GO:0034754,GO:0035239,GO:0035295,GO:0035556,GO:0040008,GO:0040011,GO:0040014,GO:0042175,GO:0042221,GO:0042330,GO:0042331,GO:0042445,GO:0042592,GO:0042594,GO:0042698,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043436,GO:0043603,GO:0043900,GO:0043934,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0045137,GO:0046466,GO:0046467,GO:0046545,GO:0046546,GO:0046660,GO:0046661,GO:0046956,GO:0048008,GO:0048232,GO:0048471,GO:0048511,GO:0048513,GO:0048514,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048608,GO:0048609,GO:0048638,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050830,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051239,GO:0051493,GO:0051674,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0052128,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060021,GO:0060176,GO:0060322,GO:0060323,GO:0060324,GO:0060325,GO:0060491,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071782,GO:0071840,GO:0071944,GO:0072001,GO:0072358,GO:0072359,GO:0072503,GO:0072507,GO:0080134,GO:0080135,GO:0090066,GO:0090702,GO:0097038,GO:0097190,GO:0098542,GO:0098771,GO:0098827,GO:0099120,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1901360,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902903	4.1.2.27	ko:K01634,ko:K20704	ko00600,ko01100,ko04071,map00600,map01100,map04071	M00100	R02464,R06516	RC00264,RC00721,RC01266	ko00000,ko00001,ko00002,ko01000,ko04131	-	-	-	Pyridoxal_deC
DYD1_k127_2235642_1	331113.SNE_A06490	8.986e-44	168.0	COG0531@1|root,COG0531@2|Bacteria,2JFMI@204428|Chlamydiae	204428|Chlamydiae	E	Solute carrier family 12	-	-	-	-	-	-	-	-	-	-	-	-	AA_permease,SLC12
DYD1_k127_2241601_3	1444711.CCJF01000005_gene551	1.292e-96	323.0	COG0842@1|root,COG0842@2|Bacteria,2JFXH@204428|Chlamydiae	204428|Chlamydiae	V	ABC-2 family transporter protein	ybhS	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD1_k127_2241601_2	1444712.BN1013_00652	7.276e-120	395.0	COG0842@1|root,COG0842@2|Bacteria,2JFF8@204428|Chlamydiae	204428|Chlamydiae	V	ABC-2 family transporter protein	ybhR	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
DYD1_k127_2241601_1	765952.PUV_01670	1.322e-136	449.0	COG1538@1|root,COG1538@2|Bacteria,2JG14@204428|Chlamydiae	204428|Chlamydiae	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD1_k127_2241601_5	331113.SNE_A01560	6.599e-40	158.0	COG2132@1|root,COG2132@2|Bacteria	2|Bacteria	Q	Multicopper oxidase	-	-	1.16.3.3,1.7.2.1	ko:K00368,ko:K22348	ko00910,ko01120,map00910,map01120	M00529	R00783,R00785	RC00086	ko00000,ko00001,ko00002,ko01000	-	-	-	Copper-bind,Cu-oxidase_2,Cu-oxidase_3,DUF4396
DYD1_k127_2241601_4	331113.SNE_A09430	2.631e-71	250.0	COG0142@1|root,COG0142@2|Bacteria,2JFQ9@204428|Chlamydiae	204428|Chlamydiae	H	Belongs to the FPP GGPP synthase family	crtE	-	2.5.1.1,2.5.1.10,2.5.1.29	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364,M00366	R01658,R02003,R02061	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	polyprenyl_synt
DYD1_k127_2241601_0	521097.Coch_0712	1.293e-148	483.0	COG1004@1|root,COG1004@2|Bacteria,4NE00@976|Bacteroidetes,1HWQV@117743|Flavobacteriia,1EQ8G@1016|Capnocytophaga	976|Bacteroidetes	C	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	ugd	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD1_k127_2251948_0	1237149.C900_03605	1.536e-127	409.0	COG0045@1|root,COG0045@2|Bacteria,4NFHA@976|Bacteroidetes,47JZU@768503|Cytophagia	976|Bacteroidetes	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	-	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
DYD1_k127_2251948_1	1237149.C900_00736	1.909e-78	267.0	COG2126@1|root,COG2126@2|Bacteria,4NEX1@976|Bacteroidetes,47NAG@768503|Cytophagia	976|Bacteroidetes	J	PFAM Ion transport protein	-	-	-	ko:K10716	-	-	-	-	ko00000,ko02000	1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6	-	-	Ion_trans
DYD1_k127_2253844_0	765952.PUV_08900	8.145e-71	248.0	COG0313@1|root,COG0313@2|Bacteria,2JFZ5@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA	rsmI	-	2.1.1.198	ko:K07056	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	TP_methylase
DYD1_k127_2253844_1	331113.SNE_A05870	1.985e-34	133.0	COG0459@1|root,COG0459@2|Bacteria,2JFHN@204428|Chlamydiae	204428|Chlamydiae	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	CP_0968	-	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD1_k127_2256864_1	765952.PUV_04820	8.82e-91	304.0	COG1762@1|root,COG1762@2|Bacteria,2JG0E@204428|Chlamydiae	204428|Chlamydiae	G	PTS system, IIa	ptsN	-	-	ko:K02806	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	HTH_17,PTS_EIIA_2
DYD1_k127_2256864_4	716544.wcw_0246	6.363e-47	173.0	COG1762@1|root,COG1762@2|Bacteria,2JG5P@204428|Chlamydiae	204428|Chlamydiae	G	PTS system, IIa	ptsN_1	-	-	ko:K02806	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	PTS_EIIA_2
DYD1_k127_2256864_3	264201.pc0268	7.157e-49	178.0	COG0756@1|root,COG0756@2|Bacteria,2JH0X@204428|Chlamydiae	204428|Chlamydiae	F	dUTPase	-	-	3.6.1.23	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	M00053	R02100,R11896	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	dUTPase
DYD1_k127_2256864_0	1444711.CCJF01000004_gene1887	1.676e-134	434.0	COG0777@1|root,COG0777@2|Bacteria,2JFSB@204428|Chlamydiae	204428|Chlamydiae	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA	accD	-	2.1.3.15,6.4.1.2	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
DYD1_k127_2256864_2	765952.PUV_04780	2.935e-87	292.0	COG0605@1|root,COG0605@2|Bacteria,2JFX8@204428|Chlamydiae	204428|Chlamydiae	C	radicals which are normally produced within the cells and which are toxic to biological systems	sodA	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
DYD1_k127_2256864_5	1444711.CCJF01000004_gene1889	1.39e-24	111.0	COG1587@1|root,COG1587@2|Bacteria,2JGZZ@204428|Chlamydiae	204428|Chlamydiae	H	Uroporphyrinogen-III synthase HemD	-	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4
DYD1_k127_2256864_6	1444712.BN1013_00164	9.972e-18	85.0	COG0181@1|root,COG0181@2|Bacteria,2JFY0@204428|Chlamydiae	204428|Chlamydiae	H	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps	hemC	-	2.5.1.61	ko:K01749	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00084	RC02317	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4,Porphobil_deam
DYD1_k127_2261604_0	264201.pc0261	3.511e-38	145.0	COG0750@1|root,COG0750@2|Bacteria,2JFMQ@204428|Chlamydiae	204428|Chlamydiae	M	zinc metalloprotease	rseP	-	-	ko:K11749	ko02024,ko04112,map02024,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M50
DYD1_k127_2278283_1	1201288.M900_A0407	1.028e-13	83.0	COG2242@1|root,COG2242@2|Bacteria	2|Bacteria	H	protein methyltransferase activity	-	-	2.1.1.303,2.1.1.319	ko:K11434,ko:K20421	ko01059,ko01130,ko04068,ko04922,map01059,map01130,map04068,map04922	M00830	R10963,R11216,R11217,R11219	RC00003,RC00392,RC02120,RC03388,RC03390	ko00000,ko00001,ko00002,ko01000,ko03036	-	-	-	DOT1,Methyltransf_11,Methyltransf_25
DYD1_k127_2278283_0	1437425.CSEC_0991	3.487e-139	454.0	COG0668@1|root,COG2823@1|root,COG0668@2|Bacteria,COG2823@2|Bacteria,2JGVB@204428|Chlamydiae	204428|Chlamydiae	M	Mechanosensitive ion channel	-	-	-	-	-	-	-	-	-	-	-	-	BON,MS_channel
DYD1_k127_229381_5	886377.Murru_0020	0.0008714	46.0	COG0124@1|root,COG0124@2|Bacteria,4NE8N@976|Bacteroidetes,1HX0E@117743|Flavobacteriia	976|Bacteroidetes	J	histidyl-tRNA synthetase	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_His
DYD1_k127_229381_2	331113.SNE_A20720	2.328e-44	166.0	COG0615@1|root,COG0615@2|Bacteria	2|Bacteria	H	ADP-L-glycero-beta-D-manno-heptose biosynthetic process	-	-	2.7.7.39	ko:K00980	ko00564,map00564	-	R00856	RC00002	ko00000,ko00001,ko01000	-	-	-	CTP_transf_like
DYD1_k127_229381_0	331113.SNE_A16380	9.377e-107	353.0	COG5285@1|root,COG5285@2|Bacteria	2|Bacteria	Q	dioxygenase activity	-	-	1.14.11.46,1.14.11.55	ko:K10674,ko:K21195	ko00260,ko00440,ko01120,map00260,map00440,map01120	-	R08050,R10724	RC00661,RC01107	ko00000,ko00001,ko01000	-	-	-	PhyH
DYD1_k127_229381_4	5722.XP_001315744.1	9.445e-06	58.0	KOG0597@1|root,KOG0597@2759|Eukaryota	2759|Eukaryota	S	positive regulation of hh target transcription factor activity	MKK2	GO:0000003,GO:0000166,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006996,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007228,GO:0007275,GO:0007276,GO:0007349,GO:0007584,GO:0008064,GO:0008092,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008589,GO:0009524,GO:0009553,GO:0009558,GO:0009561,GO:0009605,GO:0009653,GO:0009791,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010639,GO:0010646,GO:0010647,GO:0014070,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019894,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030030,GO:0030031,GO:0030554,GO:0030832,GO:0030833,GO:0030837,GO:0031156,GO:0031272,GO:0031323,GO:0031326,GO:0031333,GO:0031344,GO:0031667,GO:0032101,GO:0032104,GO:0032107,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032956,GO:0032970,GO:0033043,GO:0033206,GO:0033273,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043326,GO:0043327,GO:0043412,GO:0043900,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044782,GO:0045880,GO:0048229,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051301,GO:0051321,GO:0051493,GO:0051494,GO:0051593,GO:0051704,GO:0051716,GO:0060176,GO:0060255,GO:0060271,GO:0060491,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0140013,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901698,GO:1901700,GO:1902410,GO:1902903,GO:1902904,GO:1903046,GO:1903047,GO:1903506,GO:2000112,GO:2001141	2.7.11.1	ko:K06228	ko04341,map04341	-	-	-	ko00000,ko00001,ko01000,ko01001	-	-	-	Arm,HEAT,HEAT_2,HEAT_EZ,Pkinase
DYD1_k127_229381_1	768704.Desmer_1527	9.445e-78	280.0	COG2986@1|root,COG2986@2|Bacteria,1TPCW@1239|Firmicutes,247XP@186801|Clostridia,260ZG@186807|Peptococcaceae	186801|Clostridia	E	PFAM Phenylalanine and histidine ammonia-lyase	hutH	-	4.3.1.3	ko:K01745	ko00340,ko01100,map00340,map01100	M00045	R01168	RC00361	ko00000,ko00001,ko00002,ko01000	-	-	-	Lyase_aromatic
DYD1_k127_229381_3	1519464.HY22_12850	4.386e-40	161.0	COG0859@1|root,COG0859@2|Bacteria	2|Bacteria	M	ADP-heptose-lipopolysaccharide heptosyltransferase activity	-	-	-	ko:K02849	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
DYD1_k127_2295066_1	331113.SNE_A16630	3.299e-227	730.0	COG1026@1|root,COG1026@2|Bacteria,2JFJS@204428|Chlamydiae	204428|Chlamydiae	S	Peptidase M16C associated	CP_0875	-	-	ko:K06972	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M16C_assoc,Peptidase_M16,Peptidase_M16_C
DYD1_k127_2295066_7	1444712.BN1013_00242	1.275e-30	132.0	COG0463@1|root,COG0463@2|Bacteria,2JG4U@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyltransferase family 92	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_92
DYD1_k127_2295066_3	1123371.ATXH01000003_gene1949	1.373e-131	435.0	COG0265@1|root,COG0265@2|Bacteria,2GHRY@200940|Thermodesulfobacteria	200940|Thermodesulfobacteria	O	Trypsin	-	-	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ_2,Trypsin_2
DYD1_k127_2295066_6	297246.lpp0347	7.705e-46	181.0	COG0477@1|root,COG2814@2|Bacteria,1RBJR@1224|Proteobacteria,1S39S@1236|Gammaproteobacteria,1JD9P@118969|Legionellales	118969|Legionellales	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_2295066_5	331113.SNE_A16790	1.554e-86	300.0	COG1994@1|root,COG1994@2|Bacteria,2JFYC@204428|Chlamydiae	204428|Chlamydiae	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M50,Peptidase_M50B
DYD1_k127_2295066_4	1125863.JAFN01000001_gene1772	5.844e-129	419.0	COG0074@1|root,COG0074@2|Bacteria,1MUGA@1224|Proteobacteria,42M2W@68525|delta/epsilon subdivisions,2WJBV@28221|Deltaproteobacteria	28221|Deltaproteobacteria	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit	sucD	-	6.2.1.5	ko:K01902	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,CoA_binding,Ligase_CoA
DYD1_k127_2295066_2	331113.SNE_A16810	6.293e-166	529.0	COG0045@1|root,COG0045@2|Bacteria,2JFW1@204428|Chlamydiae	204428|Chlamydiae	F	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	-	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
DYD1_k127_2295066_8	331113.SNE_A16850	2.065e-27	121.0	2EEU9@1|root,338MT@2|Bacteria,2JGGH@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2295066_0	331113.SNE_A16860	1.198e-234	748.0	COG1198@1|root,COG1198@2|Bacteria,2JFSI@204428|Chlamydiae	204428|Chlamydiae	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	priA	-	-	ko:K04066	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Helicase_C,ResIII
DYD1_k127_2295066_9	1437425.CSEC_2078	3.612e-18	88.0	COG0169@1|root,COG0710@1|root,COG0169@2|Bacteria,COG0710@2|Bacteria,2JFIF@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	aroE	GO:0000166,GO:0003674,GO:0003824,GO:0003855,GO:0004764,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25,4.2.1.10	ko:K13832	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413,R03084	RC00206,RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_I,Shikimate_DH,Shikimate_dh_N
DYD1_k127_2332209_3	765952.PUV_00330	3.084e-35	140.0	COG1887@1|root,COG1887@2|Bacteria,2JG2U@204428|Chlamydiae	204428|Chlamydiae	M	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyphos_transf
DYD1_k127_2332209_1	264201.pc1784	2.747e-51	190.0	COG1442@1|root,COG1442@2|Bacteria,2JG80@204428|Chlamydiae	204428|Chlamydiae	M	glycosyl transferase family 8	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_8
DYD1_k127_2332209_6	1122165.AUHS01000011_gene2588	0.0003083	51.0	COG4106@1|root,COG4106@2|Bacteria,1N21Y@1224|Proteobacteria,1SB4X@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	COG0500 SAM-dependent methyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD1_k127_2332209_4	768671.ThimaDRAFT_2120	6.737e-12	72.0	29C7G@1|root,3163F@2|Bacteria,1QDGP@1224|Proteobacteria,1TKCK@1236|Gammaproteobacteria,1X1VP@135613|Chromatiales	135613|Chromatiales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2332209_2	1123325.JHUV01000010_gene1328	1.748e-46	175.0	COG0035@1|root,COG0035@2|Bacteria	2|Bacteria	F	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate	upp	GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.9	ko:K00761	ko00240,ko01100,map00240,map01100	-	R00966	RC00063	ko00000,ko00001,ko01000	-	-	iSB619.SA_RS11010	UPRTase
DYD1_k127_2332209_0	1163617.SCD_n00704	0.0	1323.0	COG3957@1|root,COG3957@2|Bacteria,1MVSE@1224|Proteobacteria,2VIGM@28216|Betaproteobacteria	28216|Betaproteobacteria	G	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase	xfp	-	4.1.2.22,4.1.2.9	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	-	R00761,R01621	RC00032,RC00226	ko00000,ko00001,ko01000	-	-	-	XFP,XFP_C,XFP_N
DYD1_k127_2332209_5	1128427.KB904821_gene4090	2.785e-09	61.0	COG0282@1|root,COG0282@2|Bacteria,1G214@1117|Cyanobacteria,1H897@1150|Oscillatoriales	1117|Cyanobacteria	C	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction	ackA	-	2.7.2.1	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00315,R01353	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetate_kinase
DYD1_k127_2333478_2	1444711.CCJF01000005_gene184	5.04e-63	227.0	COG1472@1|root,COG1472@2|Bacteria,2JG4V@204428|Chlamydiae	204428|Chlamydiae	G	Glycosyl hydrolase family 3 N terminal domain	ybbD	-	3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyco_hydro_3
DYD1_k127_2333478_3	1034943.BN1094_02697	1.837e-48	183.0	COG2267@1|root,COG2267@2|Bacteria,1MX0N@1224|Proteobacteria,1SC68@1236|Gammaproteobacteria,1JETP@118969|Legionellales	118969|Legionellales	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD1_k127_2333478_0	264201.pc1998	2.865e-87	301.0	COG2265@1|root,COG2265@2|Bacteria,2JGUU@204428|Chlamydiae	204428|Chlamydiae	J	tRNA (Uracil-5-)-methyltransferase	-	-	2.1.1.190	ko:K03215	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	tRNA_U5-meth_tr
DYD1_k127_2333478_1	331113.SNE_A00680	1.603e-65	231.0	COG1207@1|root,COG1207@2|Bacteria,2JG2J@204428|Chlamydiae	204428|Chlamydiae	M	Bacterial transferase hexapeptide (six repeats)	glmU	-	-	-	-	-	-	-	-	-	-	-	Hexapep
DYD1_k127_2333478_4	1444711.CCJF01000005_gene441	1.324e-41	156.0	COG0142@1|root,COG0142@2|Bacteria,2JFYA@204428|Chlamydiae	204428|Chlamydiae	H	Belongs to the FPP GGPP synthase family	ispA	-	2.5.1.1,2.5.1.10,2.5.1.29	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364,M00366	R01658,R02003,R02061	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	polyprenyl_synt
DYD1_k127_2339217_0	331113.SNE_A22350	2.308e-102	342.0	COG1940@1|root,COG1940@2|Bacteria,2JFZN@204428|Chlamydiae	204428|Chlamydiae	GK	ROK family	-	-	2.7.1.2	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	ROK
DYD1_k127_2339217_3	7897.ENSLACP00000010533	1.267e-34	147.0	KOG2458@1|root,KOG2458@2759|Eukaryota,38FU0@33154|Opisthokonta,3BII9@33208|Metazoa,3D3UG@33213|Bilateria,48BRI@7711|Chordata,48VJN@7742|Vertebrata	33208|Metazoa	S	KDEL motif-containing protein 2	KDELC2	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046527,GO:0070013,GO:0071704,GO:1901135,GO:1903509	-	-	-	-	-	-	-	-	-	-	Filamin,Glyco_transf_90
DYD1_k127_2339217_1	331113.SNE_A22300	1.545e-69	246.0	COG1482@1|root,COG1482@2|Bacteria	2|Bacteria	G	cell wall glycoprotein biosynthetic process	manA	-	5.3.1.8	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	M00114	R01819	RC00376	ko00000,ko00001,ko00002,ko01000	-	-	-	PMI_typeI,ROK
DYD1_k127_2339217_2	56780.SYN_02541	1.496e-56	214.0	COG1295@1|root,COG1959@1|root,COG1295@2|Bacteria,COG1959@2|Bacteria,1QICW@1224|Proteobacteria,42MBW@68525|delta/epsilon subdivisions,2WK2Z@28221|Deltaproteobacteria,2MQRA@213462|Syntrophobacterales	28221|Deltaproteobacteria	K	Virulence factor BrkB	-	-	-	ko:K07058	-	-	-	-	ko00000	-	-	-	Rrf2,Virul_fac_BrkB
DYD1_k127_2339217_4	1437425.CSEC_0081	7.132e-33	138.0	29XK7@1|root,33SWN@2|Bacteria,2JGTB@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2344599_3	1131269.AQVV01000023_gene2383	1.147e-50	185.0	COG0028@1|root,COG0028@2|Bacteria	2|Bacteria	EH	Belongs to the TPP enzyme family	ilvB2	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD1_k127_2344599_0	398767.Glov_0789	4.884e-84	291.0	COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,42MW5@68525|delta/epsilon subdivisions,2WJKR@28221|Deltaproteobacteria,43TT5@69541|Desulfuromonadales	28221|Deltaproteobacteria	F	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)	-	-	4.2.3.4	ko:K01735	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03083	RC00847	ko00000,ko00001,ko00002,ko01000	-	-	-	DHQ_synthase
DYD1_k127_2344599_2	398767.Glov_0788	2.552e-64	226.0	COG1028@1|root,COG1028@2|Bacteria,1RD0G@1224|Proteobacteria	1224|Proteobacteria	IQ	RmlD substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
DYD1_k127_2344599_4	1249480.B649_09990	5.081e-47	180.0	COG3836@1|root,COG3836@2|Bacteria,1R78B@1224|Proteobacteria,42PJ0@68525|delta/epsilon subdivisions,2YM8R@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	G	HpcH/HpaI aldolase/citrate lyase family	-	-	-	-	-	-	-	-	-	-	-	-	HpcH_HpaI
DYD1_k127_2344599_1	1210884.HG799466_gene12617	4.862e-72	250.0	COG2518@1|root,COG2518@2|Bacteria	2|Bacteria	O	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	-	-	2.1.1.163,2.1.1.201,2.1.1.77	ko:K00573,ko:K03183,ko:K07003	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116,M00117	R04990,R04993,R06859,R08774,R09736	RC00003,RC01253,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF3560,Lant_dehydr_C,Methyltransf_12,Methyltransf_21,NAS,PS-DH
DYD1_k127_2344599_5	526224.Bmur_0701	1.437e-13	82.0	COG0463@1|root,COG0463@2|Bacteria,2J8HD@203691|Spirochaetes	203691|Spirochaetes	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_2359421_1	1444712.BN1013_00216	7.356e-63	218.0	COG0556@1|root,COG0556@2|Bacteria,2JFI1@204428|Chlamydiae	204428|Chlamydiae	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	uvrB	-	-	ko:K03702	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
DYD1_k127_2359421_4	1191523.MROS_0376	5.049e-08	61.0	COG1091@1|root,COG1091@2|Bacteria	2|Bacteria	M	dTDP-4-dehydrorhamnose reductase activity	rmlD	-	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	RmlD_sub_bind
DYD1_k127_2359421_3	693661.Arcve_0546	3.243e-09	63.0	COG1091@1|root,arCOG01367@2157|Archaea,2XVV7@28890|Euryarchaeota,245XF@183980|Archaeoglobi	183980|Archaeoglobi	M	TIGRFAM dTDP-4-dehydrorhamnose reductase	-	-	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	RmlD_sub_bind
DYD1_k127_2359421_0	1210884.HG799466_gene12617	1.82e-74	256.0	COG2518@1|root,COG2518@2|Bacteria	2|Bacteria	O	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	-	-	2.1.1.163,2.1.1.201,2.1.1.77	ko:K00573,ko:K03183,ko:K07003	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116,M00117	R04990,R04993,R06859,R08774,R09736	RC00003,RC01253,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF3560,Lant_dehydr_C,Methyltransf_12,Methyltransf_21,NAS,PS-DH
DYD1_k127_2359421_2	391598.FBBAL38_01825	5.966e-40	159.0	COG0438@1|root,COG0457@1|root,COG0438@2|Bacteria,COG0457@2|Bacteria,4P2KW@976|Bacteroidetes	976|Bacteroidetes	M	Glycosyltransferase family 17	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_17
DYD1_k127_2406502_6	673862.BABL1_725	1.013e-06	52.0	COG0450@1|root,COG0450@2|Bacteria,1MWPY@1224|Proteobacteria,42MAJ@68525|delta/epsilon subdivisions,2WNT4@28221|Deltaproteobacteria	28221|Deltaproteobacteria	O	PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen	prx-2	-	1.11.1.15	ko:K03386,ko:K20011	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	1-cysPrx_C,AhpC-TSA
DYD1_k127_2406502_3	331113.SNE_A22570	1.182e-75	259.0	COG0491@1|root,COG0491@2|Bacteria,2JG0X@204428|Chlamydiae	204428|Chlamydiae	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
DYD1_k127_2406502_7	551789.ATVJ01000003_gene39	1.569e-05	47.0	COG1961@1|root,COG1961@2|Bacteria,1PWCY@1224|Proteobacteria,2TVME@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	COG1961 Site-specific recombinases, DNA invertase Pin homologs	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD1_k127_2406502_0	660470.Theba_1306	3.915e-253	801.0	COG1982@1|root,COG2199@1|root,COG1982@2|Bacteria,COG3706@2|Bacteria	2|Bacteria	T	GGDEF domain	adiA	-	2.7.7.65,4.1.1.19	ko:K01584,ko:K01585,ko:K20955	ko00330,ko01100,ko05111,map00330,map01100,map05111	M00133	R00566	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	OKR_DC_1,OKR_DC_1_C,OKR_DC_1_N
DYD1_k127_2406502_1	716544.wcw_1263	8.023e-158	511.0	COG0531@1|root,COG0531@2|Bacteria,2JFCI@204428|Chlamydiae	204428|Chlamydiae	E	Amino acid permease	-	-	-	ko:K20265	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3	-	-	AA_permease_2
DYD1_k127_2406502_5	1173020.Cha6605_5433	6.634e-32	134.0	COG4122@1|root,COG4122@2|Bacteria,1G9N3@1117|Cyanobacteria	1117|Cyanobacteria	S	Macrocin-O-methyltransferase (TylF)	-	-	-	-	-	-	-	-	-	-	-	-	TylF
DYD1_k127_2406502_2	765952.PUV_04550	2.882e-91	310.0	COG0569@1|root,COG0569@2|Bacteria,2JFU5@204428|Chlamydiae	204428|Chlamydiae	C	TrkA-C domain	trkA	-	-	ko:K03499	-	-	-	-	ko00000,ko02000	2.A.38.1,2.A.38.4	-	-	TrkA_C,TrkA_N
DYD1_k127_2418405_3	1444712.BN1013_00535	4.952e-54	203.0	COG0793@1|root,COG0793@2|Bacteria,2JFDY@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the peptidase S41A family	tsp	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ,PDZ_2,Peptidase_S41
DYD1_k127_2418405_2	331113.SNE_A03290	7.846e-63	217.0	COG0048@1|root,COG0048@2|Bacteria,2JG35@204428|Chlamydiae	204428|Chlamydiae	J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit	rpsL	-	-	ko:K02950	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosom_S12_S23
DYD1_k127_2418405_1	1437425.CSEC_2003	1.856e-73	250.0	COG0049@1|root,COG0049@2|Bacteria,2JFZ4@204428|Chlamydiae	204428|Chlamydiae	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA	rpsG	-	-	ko:K02992	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S7
DYD1_k127_2418405_0	331113.SNE_A03270	0.0	1119.0	COG0480@1|root,COG0480@2|Bacteria,2JFJN@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome	fusA	-	-	ko:K02355	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2
DYD1_k127_2418405_4	331113.SNE_A03260	4.3e-50	179.0	COG0051@1|root,COG0051@2|Bacteria,2JG78@204428|Chlamydiae	204428|Chlamydiae	J	Involved in the binding of tRNA to the ribosomes	rpsJ	-	-	ko:K02946	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S10
DYD1_k127_2517661_1	716544.wcw_1724	1.147e-81	282.0	COG1055@1|root,COG1055@2|Bacteria,2JFPB@204428|Chlamydiae	204428|Chlamydiae	P	Putative Na+/H+ antiporter	CP_0904	-	-	-	-	-	-	-	-	-	-	-	Na_H_antiport_3
DYD1_k127_2517661_3	1408444.JHYC01000018_gene312	6.771e-12	73.0	2EN6R@1|root,33FUM@2|Bacteria,1P9EZ@1224|Proteobacteria,1T6XY@1236|Gammaproteobacteria,1JEH9@118969|Legionellales	118969|Legionellales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2517661_0	331113.SNE_A02070	0.0	1273.0	COG0653@1|root,COG0653@2|Bacteria,2JFI8@204428|Chlamydiae	204428|Chlamydiae	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	secA	-	-	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4	-	-	Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
DYD1_k127_2517661_2	1033810.HLPCO_000903	6.691e-25	110.0	COG1670@1|root,COG1670@2|Bacteria	2|Bacteria	J	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	yokL3	-	2.3.1.57	ko:K00657,ko:K07023	ko00330,ko01100,ko04216,map00330,map01100,map04216	M00135	R01154	RC00004,RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetyltransf_3
DYD1_k127_2517661_4	1444711.CCJF01000005_gene324	2.586e-11	66.0	COG0688@1|root,COG0688@2|Bacteria,2JFMN@204428|Chlamydiae	204428|Chlamydiae	I	Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer)	psd	-	4.1.1.65	ko:K01613	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00093	R02055	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	PS_Dcarbxylase
DYD1_k127_2559008_5	716544.wcw_0640	4.222e-12	74.0	2DZIQ@1|root,32VBQ@2|Bacteria,2JGAZ@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2559008_0	331113.SNE_A10990	2.843e-138	445.0	COG0623@1|root,COG0623@2|Bacteria,2JFHT@204428|Chlamydiae	204428|Chlamydiae	I	Enoyl- acyl-carrier-protein reductase NADH	fabI	-	1.3.1.10,1.3.1.9	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	M00083,M00572	R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671	RC00052,RC00076,RC00120	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD1_k127_2559008_1	673862.BABL1_334	1.967e-80	275.0	COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,42MTF@68525|delta/epsilon subdivisions,2WJ6X@28221|Deltaproteobacteria	28221|Deltaproteobacteria	D	PFAM Cobyrinic acid ac-diamide synthase	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD1_k127_2559008_3	240015.ACP_0207	8.266e-36	140.0	COG1765@1|root,COG1765@2|Bacteria,3Y7VV@57723|Acidobacteria,2JN4F@204432|Acidobacteriia	204432|Acidobacteriia	O	OsmC-like protein	-	-	-	-	-	-	-	-	-	-	-	-	OsmC
DYD1_k127_2559008_4	1437425.CSEC_1340	5.629e-22	107.0	COG1466@1|root,COG1466@2|Bacteria,2JG2N@204428|Chlamydiae	204428|Chlamydiae	L	dna polymerase III delta subunit	-	-	2.7.7.7	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta
DYD1_k127_2559008_2	1444711.CCJF01000005_gene1209	1.977e-58	210.0	COG0313@1|root,COG0313@2|Bacteria,2JGTN@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA	-	-	2.1.1.198	ko:K07056	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	-
DYD1_k127_2572597_0	331113.SNE_A00760	1.378e-28	132.0	COG1196@1|root,COG3209@1|root,COG1196@2|Bacteria,COG3209@2|Bacteria,2JFH5@204428|Chlamydiae	2|Bacteria	M	Rhs family	-	-	-	-	-	-	-	-	-	-	-	-	RHS_repeat
DYD1_k127_2572597_1	331113.SNE_A23650	1.368e-17	86.0	2EQNW@1|root,347ZJ@2|Bacteria,2JHB0@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2572886_3	331113.SNE_A03190	2.223e-09	60.0	COG2913@1|root,COG2913@2|Bacteria	2|Bacteria	J	Gram-negative-bacterium-type cell outer membrane assembly	-	-	-	-	-	-	-	-	-	-	-	-	SmpA_OmlA
DYD1_k127_2572886_2	331113.SNE_A03180	3.345e-38	148.0	2CDQ1@1|root,32TFM@2|Bacteria,2JG96@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2572886_4	1454004.AW11_02082	8.862e-09	67.0	COG0738@1|root,COG0738@2|Bacteria,1P1TX@1224|Proteobacteria	1224|Proteobacteria	G	Major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_2572886_0	1444711.CCJF01000005_gene604	1.385e-138	450.0	COG0772@1|root,COG0772@2|Bacteria,2JFPV@204428|Chlamydiae	204428|Chlamydiae	D	Belongs to the SEDS family	rodA	-	-	ko:K05837	-	-	-	-	ko00000,ko03036	-	-	-	FTSW_RODA_SPOVE
DYD1_k127_2572886_1	331113.SNE_A03160	1.671e-57	208.0	COG0340@1|root,COG0340@2|Bacteria,2JG7M@204428|Chlamydiae	204428|Chlamydiae	H	Biotin/lipoate A/B protein ligase family	birA	-	6.3.4.15	ko:K03524	ko00780,ko01100,map00780,map01100	-	R01074,R05145	RC00043,RC00070,RC00096,RC02896	ko00000,ko00001,ko01000,ko03000	-	-	-	BPL_C,BPL_LplA_LipB
DYD1_k127_2598136_0	765952.PUV_03190	1.229e-57	206.0	COG0566@1|root,COG0566@2|Bacteria,2JG2W@204428|Chlamydiae	204428|Chlamydiae	J	SpoU rRNA Methylase family	-	-	-	-	-	-	-	-	-	-	-	-	SpoU_methylase
DYD1_k127_2598136_1	985867.AEWF01000004_gene109	5.839e-36	142.0	COG0563@1|root,COG0563@2|Bacteria,1Q82N@1224|Proteobacteria,2VE8D@28211|Alphaproteobacteria,47G72@766|Rickettsiales	766|Rickettsiales	F	adenylate kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2632736_0	1444711.CCJF01000005_gene385	3.048e-138	476.0	COG1074@1|root,COG1074@2|Bacteria,2JFIP@204428|Chlamydiae	204428|Chlamydiae	L	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA	recB	-	3.1.11.5	ko:K03582	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
DYD1_k127_2632736_2	716544.wcw_0032	4.019e-80	299.0	COG1330@1|root,COG1330@2|Bacteria,2JFNT@204428|Chlamydiae	204428|Chlamydiae	L	Exodeoxyribonuclease V, gamma subunit	recC	-	3.1.11.5	ko:K03583	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_V_gamma
DYD1_k127_2632736_3	1444712.BN1013_00242	2.565e-64	231.0	COG0463@1|root,COG0463@2|Bacteria,2JG4U@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyltransferase family 92	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_92
DYD1_k127_2632736_1	765952.PUV_03710	1.426e-126	424.0	COG0204@1|root,COG0477@1|root,COG0204@2|Bacteria,COG2814@2|Bacteria,2JFDV@204428|Chlamydiae	204428|Chlamydiae	EGP	Major Facilitator Superfamily	CP_0009	-	2.3.1.40,6.2.1.20	ko:K05939	ko00071,ko00564,map00071,map00564	-	R01406,R04864	RC00014,RC00039,RC00041	ko00000,ko00001,ko01000	-	-	-	MFS_1
DYD1_k127_2638855_0	1089439.KB902275_gene1722	0.0006244	52.0	COG0738@1|root,COG0738@2|Bacteria,1R8F9@1224|Proteobacteria,1SHK4@1236|Gammaproteobacteria,461UA@72273|Thiotrichales	72273|Thiotrichales	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_2662045_6	227086.JGI_V11_89109	4.945e-05	50.0	COG5022@1|root,KOG0160@2759|Eukaryota,KOG4229@2759|Eukaryota	2759|Eukaryota	Z	motor activity	Myo22	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464	-	ko:K10357,ko:K21868	-	-	-	-	ko00000,ko03019,ko03029,ko04131,ko04812	-	-	-	FERM_M,IQ,MyTH4,Myosin_N,Myosin_head,RA,WW
DYD1_k127_2662045_1	1437425.CSEC_1034	6.947e-33	131.0	COG0199@1|root,COG0199@2|Bacteria,2JG9Y@204428|Chlamydiae	204428|Chlamydiae	J	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	rpsN	-	-	ko:K02954	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S14
DYD1_k127_2662045_3	716544.wcw_0804	1.318e-13	71.0	COG0257@1|root,COG0257@2|Bacteria,2JGHY@204428|Chlamydiae	204428|Chlamydiae	J	Ribosomal protein L36	rpmJ	-	-	ko:K02919	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L36
DYD1_k127_2662045_5	716544.wcw_0805	2.117e-10	61.0	COG0230@1|root,COG0230@2|Bacteria,2JGGK@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the bacterial ribosomal protein bL34 family	rpmH	-	-	ko:K02914	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L34
DYD1_k127_2662045_4	331113.SNE_A18370	4.617e-13	76.0	COG0594@1|root,COG0594@2|Bacteria,2JGGJ@204428|Chlamydiae	204428|Chlamydiae	J	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	rnpA	-	3.1.26.5	ko:K03536	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Ribonuclease_P
DYD1_k127_2662045_0	1444711.CCJF01000004_gene2364	6.524e-234	739.0	COG0210@1|root,COG0210@2|Bacteria,2JFGH@204428|Chlamydiae	204428|Chlamydiae	L	UvrD-like helicase C-terminal domain	pcrA-A	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
DYD1_k127_2662045_2	1437425.CSEC_1030	8.672e-25	105.0	COG2042@1|root,COG2042@2|Bacteria,2JG7G@204428|Chlamydiae	204428|Chlamydiae	S	rRNA processing	-	-	-	ko:K09140	-	-	-	-	ko00000,ko03009	-	-	-	DTW
DYD1_k127_2725487_1	716544.wcw_0863	5.498e-42	162.0	COG4166@1|root,COG4166@2|Bacteria,2JFKE@204428|Chlamydiae	204428|Chlamydiae	E	transmembrane transport	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2725487_0	1444711.CCJF01000005_gene1734	6.957e-78	268.0	COG0527@1|root,COG0527@2|Bacteria,2JFUC@204428|Chlamydiae	204428|Chlamydiae	E	Amino acid kinase family	lysC	-	2.7.2.4	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase
DYD1_k127_2725487_2	1444711.CCJF01000005_gene1735	7.836e-31	125.0	COG0539@1|root,COG0539@2|Bacteria,2JFJ4@204428|Chlamydiae	204428|Chlamydiae	J	thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	rpsA	GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010	-	ko:K02945	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	S1
DYD1_k127_275139_3	331113.SNE_A11440	1.309e-32	131.0	COG0477@1|root,COG2814@2|Bacteria,2JGQX@204428|Chlamydiae	204428|Chlamydiae	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_275139_0	331113.SNE_A10760	4.034e-127	432.0	2DBSG@1|root,2ZAS8@2|Bacteria,2JFD6@204428|Chlamydiae	204428|Chlamydiae	-	-	CP_0861	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_275139_1	331113.SNE_A10800	1.308e-98	335.0	COG1463@1|root,COG1463@2|Bacteria,2JFN3@204428|Chlamydiae	204428|Chlamydiae	Q	MlaD protein	-	-	-	ko:K02067	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaD
DYD1_k127_275139_2	331113.SNE_A10810	5.739e-72	246.0	COG1127@1|root,COG1127@2|Bacteria,2JFQY@204428|Chlamydiae	204428|Chlamydiae	Q	ABC transporter	mkl	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD1_k127_2751919_3	525904.Tter_0129	4.824e-18	86.0	COG0306@1|root,COG0306@2|Bacteria,2NP4R@2323|unclassified Bacteria	2|Bacteria	P	Phosphate transporter family	pit	GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0015291,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661	-	ko:K03306	-	-	-	-	ko00000	2.A.20	-	-	PHO4
DYD1_k127_2751919_2	653733.Selin_1030	9.361e-66	230.0	COG0652@1|root,COG0652@2|Bacteria	2|Bacteria	O	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	ppiB	GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564	5.2.1.8	ko:K01802,ko:K03767,ko:K03768	ko01503,ko04217,map01503,map04217	-	-	-	ko00000,ko00001,ko01000,ko03110,ko04147	-	-	-	Hydrolase_3,Pro_isomerase
DYD1_k127_2751919_1	1260251.SPISAL_05395	2.716e-82	288.0	COG2252@1|root,COG2252@2|Bacteria,1MUV0@1224|Proteobacteria,1RMBE@1236|Gammaproteobacteria,1X0EU@135613|Chromatiales	135613|Chromatiales	S	Permease family	-	-	-	ko:K06901	-	-	-	-	ko00000,ko02000	2.A.1.40	-	-	Xan_ur_permease
DYD1_k127_2751919_0	331113.SNE_A22230	2.42e-105	357.0	COG0707@1|root,COG0707@2|Bacteria,2JG8P@204428|Chlamydiae	204428|Chlamydiae	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2751919_5	765952.PUV_14240	1.046e-13	78.0	2E07B@1|root,32VV7@2|Bacteria,2JGBW@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2751919_6	1444711.CCJF01000005_gene866	2.048e-07	57.0	29XK7@1|root,33SWN@2|Bacteria,2JGTB@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2776214_4	1444712.BN1013_02318	5.63e-59	207.0	COG0316@1|root,COG0316@2|Bacteria,2JFY5@204428|Chlamydiae	204428|Chlamydiae	S	Domain of unknown function (DUF1858)	iscA	-	-	-	-	-	-	-	-	-	-	-	DUF1858,Fe-S_biosyn
DYD1_k127_2776214_1	42099.EPrPV00000021248	9.393e-141	460.0	COG1249@1|root,KOG1335@2759|Eukaryota,1MHB5@121069|Pythiales	121069|Pythiales	C	Dihydrolipoyl dehydrogenase. Source PGD	-	-	-	-	-	-	-	-	-	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD1_k127_2776214_2	716544.wcw_0998	7.719e-123	404.0	COG0508@1|root,COG0508@2|Bacteria,2JFPZ@204428|Chlamydiae	204428|Chlamydiae	C	2-oxoglutarate dehydrogenase	sucB	-	2.3.1.61	ko:K00658	ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R02570,R02571,R08549	RC00004,RC02727,RC02833	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl
DYD1_k127_2776214_0	716544.wcw_0997	1.095e-293	926.0	COG0567@1|root,COG0567@2|Bacteria,2JFWQ@204428|Chlamydiae	204428|Chlamydiae	C	dehydrogenase e1 component	sucA	-	1.2.4.2	ko:K00164	ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R00621,R01933,R01940,R03316,R08549	RC00004,RC00027,RC00627,RC02743,RC02833,RC02883	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
DYD1_k127_2776214_5	331113.SNE_A11060	2.656e-49	179.0	2DMAA@1|root,32BTP@2|Bacteria,2JG6W@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2776214_3	716544.wcw_0983	3.382e-110	366.0	COG0635@1|root,COG0635@2|Bacteria,2JFTP@204428|Chlamydiae	204428|Chlamydiae	H	Involved in the biosynthesis of porphyrin-containing compound	hemN	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
DYD1_k127_2776214_6	331113.SNE_A23020	3.157e-49	180.0	COG1047@1|root,COG1047@2|Bacteria,2JHGM@204428|Chlamydiae	204428|Chlamydiae	O	FKBP-type peptidyl-prolyl cis-trans isomerase	-	-	5.2.1.8	ko:K03775	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	FKBP_C
DYD1_k127_2813579_3	331113.SNE_A00410	3.827e-18	94.0	298AF@1|root,2ZVFZ@2|Bacteria,2JHFY@204428|Chlamydiae	204428|Chlamydiae	M	In elementary bodies (EBs, the infectious stage, which is able to survive outside the host cell) provides the structural integrity of the outer envelope through disulfide cross-links with the small cysteine-rich protein and the large cysteine-rich periplasmic protein. It has been described in publications as the Sarkosyl-insoluble COMC (Chlamydia outer membrane complex), and serves as the functional equivalent of peptidoglycan	ompA	GO:0005575,GO:0005576,GO:0005623,GO:0009986,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044464,GO:0065010	-	ko:K03162	-	-	-	-	ko00000,ko02000	1.B.2.1	-	-	Chlam_OMP
DYD1_k127_2813579_4	264201.pc1545	7.394e-10	63.0	2CG3Q@1|root,336U3@2|Bacteria,2JGDW@204428|Chlamydiae	204428|Chlamydiae	S	Histone H1-like protein Hc1	hctA	-	-	-	-	-	-	-	-	-	-	-	Hc1
DYD1_k127_2813579_0	716544.wcw_0204	1.361e-143	467.0	COG2265@1|root,COG2265@2|Bacteria,2JFX6@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family	rumA	-	-	-	-	-	-	-	-	-	-	-	tRNA_U5-meth_tr
DYD1_k127_2813579_2	716544.wcw_0206	6.374e-34	133.0	COG1862@1|root,COG1862@2|Bacteria,2JGA9@204428|Chlamydiae	204428|Chlamydiae	U	The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF- YajC-YidC subcomplex facilitates these functions	yajC	-	-	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	YajC
DYD1_k127_2813579_1	1444711.CCJF01000004_gene1849	2.989e-43	164.0	COG0326@1|root,COG0326@2|Bacteria,2JFDI@204428|Chlamydiae	204428|Chlamydiae	O	chaperone protein htpG	htpG	-	-	ko:K04079	ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418	-	-	-	ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147	-	-	-	HATPase_c_3,HSP90
DYD1_k127_2837846_3	316055.RPE_1511	3.879e-49	177.0	COG0615@1|root,COG2870@1|root,COG0615@2|Bacteria,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,2TRCN@28211|Alphaproteobacteria,3JTVF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose	-	-	-	-	-	-	-	-	-	-	-	-	CTP_transf_like,PfkB
DYD1_k127_2837846_0	1380394.JADL01000001_gene2745	1.481e-147	473.0	COG0451@1|root,COG0451@2|Bacteria,1QUEV@1224|Proteobacteria,2TW46@28211|Alphaproteobacteria,2JQV7@204441|Rhodospirillales	204441|Rhodospirillales	M	Male sterility protein	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD1_k127_2837846_1	331869.BAL199_07303	1.033e-142	459.0	COG0451@1|root,COG0451@2|Bacteria,1PB4Y@1224|Proteobacteria,2TTV7@28211|Alphaproteobacteria,4BQC1@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	M	3-beta hydroxysteroid dehydrogenase/isomerase family	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD1_k127_2837846_2	1321778.HMPREF1982_00182	2.953e-80	274.0	COG0176@1|root,COG0176@2|Bacteria,1TP4Q@1239|Firmicutes	1239|Firmicutes	H	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	-	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD1_k127_2845453_1	331113.SNE_A12270	8.945e-103	342.0	COG1078@1|root,COG1078@2|Bacteria,2JHB7@204428|Chlamydiae	204428|Chlamydiae	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	ko:K06885	-	-	-	-	ko00000	-	-	-	HD
DYD1_k127_2845453_0	1444712.BN1013_00874	2.066e-167	534.0	COG0516@1|root,COG0516@2|Bacteria,2JGRE@204428|Chlamydiae	204428|Chlamydiae	C	IMP dehydrogenase / GMP reductase domain	guaB	-	1.1.1.205	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R08240	RC00143,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	IMPDH
DYD1_k127_2845453_2	1437425.CSEC_1691	5.84e-49	186.0	COG0463@1|root,COG0463@2|Bacteria,2JFTY@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	waaE	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_2845453_3	765952.PUV_27030	7.452e-18	84.0	COG0463@1|root,COG0463@2|Bacteria,2JFTY@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	waaE	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_2845453_4	45351.EDO41242	7.367e-15	87.0	KOG0033@1|root,KOG0033@2759|Eukaryota,38FV7@33154|Opisthokonta,3BF3D@33208|Metazoa	33208|Metazoa	T	calmodulin-dependent protein kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	Pkinase
DYD1_k127_285813_1	1056820.KB900632_gene2135	5.967e-35	135.0	COG0847@1|root,COG0847@2|Bacteria,1P2A7@1224|Proteobacteria,1SSAX@1236|Gammaproteobacteria,2PQGP@256005|Alteromonadales genera incertae sedis	1236|Gammaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_285813_0	1123261.AXDW01000008_gene957	5.501e-88	312.0	2CG4Y@1|root,2Z9HK@2|Bacteria,1R40S@1224|Proteobacteria,1S1GZ@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_285813_3	1121935.AQXX01000127_gene1209	3.138e-08	66.0	COG0847@1|root,COG0847@2|Bacteria,1P2A7@1224|Proteobacteria,1SSAX@1236|Gammaproteobacteria	1236|Gammaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_285813_2	865937.Gilli_1379	9.243e-16	79.0	28J7B@1|root,2Z92R@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2871027_1	298654.FraEuI1c_1004	2.342e-07	62.0	COG0272@1|root,COG0272@2|Bacteria,2GJUY@201174|Actinobacteria,4ES5B@85013|Frankiales	201174|Actinobacteria	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016874,GO:0016886,GO:0030312,GO:0033554,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2
DYD1_k127_2871027_0	331113.SNE_A09810	1.647e-141	459.0	COG0531@1|root,COG0531@2|Bacteria,2JFCI@204428|Chlamydiae	204428|Chlamydiae	E	Amino acid permease	xasA	-	-	ko:K20265	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3	-	-	AA_permease_2
DYD1_k127_2890221_2	1444712.BN1013_01975	5.65e-06	57.0	2DMSJ@1|root,32TEA@2|Bacteria,2JGUB@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2890221_1	443152.MDG893_02905	2.2e-10	73.0	COG2706@1|root,COG2931@1|root,COG2706@2|Bacteria,COG2931@2|Bacteria,1R0AU@1224|Proteobacteria,1S2TT@1236|Gammaproteobacteria	1236|Gammaproteobacteria	Q	calcium- and calmodulin-responsive adenylate cyclase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2890221_0	1306947.ARQD01000001_gene899	2.322e-81	282.0	COG0457@1|root,COG0457@2|Bacteria	1306947.ARQD01000001_gene899|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2890221_3	331113.SNE_A22770	0.0001517	53.0	COG1215@1|root,COG1215@2|Bacteria,2JH6V@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_2900868_2	331113.SNE_A15260	5.169e-65	235.0	COG1413@1|root,COG1413@2|Bacteria,2JFPT@204428|Chlamydiae	204428|Chlamydiae	C	lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	HEAT_2
DYD1_k127_2900868_4	1444711.CCJF01000004_gene2216	2.931e-45	166.0	COG0537@1|root,COG0537@2|Bacteria,2JG6G@204428|Chlamydiae	204428|Chlamydiae	FG	catalytic activity	CP_0266	-	-	-	-	-	-	-	-	-	-	-	HIT
DYD1_k127_2900868_1	331113.SNE_A15280	8.317e-116	379.0	COG4286@1|root,COG4286@2|Bacteria,2JFGF@204428|Chlamydiae	204428|Chlamydiae	S	conserved protein related to MYG1 family	CP_0265	-	-	-	-	-	-	-	-	-	-	-	UPF0160
DYD1_k127_2900868_3	118163.Ple7327_2411	1.402e-59	209.0	COG1881@1|root,COG1881@2|Bacteria,1G5SZ@1117|Cyanobacteria,3VN4P@52604|Pleurocapsales	1117|Cyanobacteria	G	Raf kinase inhibitor-like protein, YbhB YbcL family	-	-	-	ko:K06910	-	-	-	-	ko00000	-	-	-	PBP
DYD1_k127_2900868_0	716544.wcw_0569	2.024e-134	440.0	COG1611@1|root,COG1611@2|Bacteria,2JFEZ@204428|Chlamydiae	204428|Chlamydiae	S	Belongs to the LOG family	-	-	3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240	-	R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	-
DYD1_k127_2951463_1	1121937.AUHJ01000011_gene2889	6.894e-27	117.0	COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,1RNGN@1236|Gammaproteobacteria,464U6@72275|Alteromonadaceae	1236|Gammaproteobacteria	G	COG2133 Glucose sorbosone dehydrogenases	-	-	-	ko:K21430	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,GSDH
DYD1_k127_2951463_0	331113.SNE_A14690	2.458e-148	475.0	COG0180@1|root,COG0180@2|Bacteria,2JFCD@204428|Chlamydiae	204428|Chlamydiae	J	Tryptophanyl-tRNA synthetase	trpS	-	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1b
DYD1_k127_2960215_1	716544.wcw_1230	8.929e-135	441.0	COG0621@1|root,COG0621@2|Bacteria,2JFUS@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the methylthiolation of N6- threonylcarbamoyladenosine (t(6)A), leading to the formation of 2- methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine	mtaB	-	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
DYD1_k127_2960215_0	1444711.CCJF01000005_gene1285	1.204e-148	482.0	COG2262@1|root,COG2262@2|Bacteria,2JFSR@204428|Chlamydiae	204428|Chlamydiae	S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis	hflX	-	-	ko:K03665	-	-	-	-	ko00000,ko03009	-	-	-	GTP-bdg_M,GTP-bdg_N,MMR_HSR1
DYD1_k127_2960215_2	765952.PUV_14920	7.411e-77	265.0	COG1235@1|root,COG1235@2|Bacteria,2JFXZ@204428|Chlamydiae	204428|Chlamydiae	S	Metallo-beta-lactamase superfamily	phnP	-	3.1.4.55	ko:K06167	ko00440,map00440	-	R10205	RC00296	ko00000,ko00001,ko01000	-	-	-	Lactamase_B_2
DYD1_k127_2960215_6	765952.PUV_14540	1.246e-38	155.0	COG0665@1|root,COG0665@2|Bacteria,2JG6M@204428|Chlamydiae	204428|Chlamydiae	E	Oxidoreductase	CP_0822	-	-	-	-	-	-	-	-	-	-	-	DAO
DYD1_k127_2960215_4	331113.SNE_A07060	3.214e-66	235.0	28JQF@1|root,2Z9GB@2|Bacteria,2JFW5@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_2960215_3	673862.BABL1_734	3.316e-76	266.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,42S93@68525|delta/epsilon subdivisions,2X5GZ@28221|Deltaproteobacteria	28221|Deltaproteobacteria	V	ABC transporter	-	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
DYD1_k127_2960215_5	673862.BABL1_44	6.908e-55	202.0	COG1682@1|root,COG1682@2|Bacteria,1QXTH@1224|Proteobacteria,42XN1@68525|delta/epsilon subdivisions,2WSPR@28221|Deltaproteobacteria	28221|Deltaproteobacteria	U	Transport permease protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
DYD1_k127_30387_0	331113.SNE_A22140	8.902e-46	169.0	COG0558@1|root,COG0558@2|Bacteria,2JG6R@204428|Chlamydiae	204428|Chlamydiae	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pgsA_1	-	2.7.8.5	ko:K00995	ko00564,ko01100,map00564,map01100	-	R01801	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
DYD1_k127_30387_1	1173028.ANKO01000052_gene1653	7.962e-29	127.0	COG0457@1|root,COG0457@2|Bacteria,1GAAM@1117|Cyanobacteria,1HDEW@1150|Oscillatoriales	1117|Cyanobacteria	S	Sulfotransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_1
DYD1_k127_30387_2	1173028.ANKO01000052_gene1653	1.16e-22	100.0	COG0457@1|root,COG0457@2|Bacteria,1GAAM@1117|Cyanobacteria,1HDEW@1150|Oscillatoriales	1117|Cyanobacteria	S	Sulfotransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_1
DYD1_k127_3040829_0	331113.SNE_A06420	1.468e-107	359.0	COG0659@1|root,COG0659@2|Bacteria,2JFQW@204428|Chlamydiae	204428|Chlamydiae	P	Sulfate transporter family	ychM	-	-	ko:K03321	-	-	-	-	ko00000,ko02000	2.A.53.3	-	-	STAS,Sulfate_transp
DYD1_k127_3040829_1	748449.Halha_0209	5.919e-56	203.0	COG0563@1|root,COG0563@2|Bacteria,1TP27@1239|Firmicutes,247YN@186801|Clostridia,3WAJC@53433|Halanaerobiales	186801|Clostridia	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism	adk	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	iHN637.CLJU_RS20110	ADK,ADK_lid
DYD1_k127_3040829_4	264462.Bd0909	7.464e-26	112.0	COG1764@1|root,COG1764@2|Bacteria,1RJIP@1224|Proteobacteria	1224|Proteobacteria	O	redox protein regulator of disulfide bond formation	-	-	-	-	-	-	-	-	-	-	-	-	OsmC
DYD1_k127_3040829_2	331113.SNE_A12040	3.703e-33	140.0	COG0666@1|root,COG2940@1|root,COG0666@2|Bacteria,COG2940@2|Bacteria,2JG8R@204428|Chlamydiae	204428|Chlamydiae	S	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	set	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
DYD1_k127_3040829_3	1229831.M832_06660	6.958e-30	126.0	COG2940@1|root,COG2940@2|Bacteria,2JG8R@204428|Chlamydiae	204428|Chlamydiae	S	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	set	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
DYD1_k127_3045932_2	331113.SNE_A18000	1.216e-93	317.0	COG0501@1|root,COG0501@2|Bacteria,2JFUN@204428|Chlamydiae	204428|Chlamydiae	O	Peptidase family M48	-	-	-	ko:K03799	-	M00743	-	-	ko00000,ko00002,ko01000,ko01002	-	-	-	Peptidase_M48
DYD1_k127_3045932_4	716544.wcw_0837	1.722e-10	64.0	2DSAT@1|root,33F9Y@2|Bacteria,2JGI6@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3045932_0	765952.PUV_25990	3.079e-131	432.0	COG0624@1|root,COG0624@2|Bacteria,2JFTI@204428|Chlamydiae	204428|Chlamydiae	E	Peptidase dimerisation domain	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
DYD1_k127_3045932_5	1444711.CCJF01000004_gene2416	7.97e-08	65.0	COG1196@1|root,COG1196@2|Bacteria,2JGWU@204428|Chlamydiae	204428|Chlamydiae	D	nuclear chromosome segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3045932_1	1237149.C900_03538	1.642e-123	406.0	COG0451@1|root,COG0451@2|Bacteria,4NI6B@976|Bacteroidetes,47UHB@768503|Cytophagia	976|Bacteroidetes	GM	RmlD substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD1_k127_3045932_3	643867.Ftrac_2079	1.738e-92	318.0	COG0451@1|root,COG2217@1|root,COG0451@2|Bacteria,COG2217@2|Bacteria	2|Bacteria	P	Heavy metal translocating P-type atpase	-	-	2.3.1.94,3.6.3.3,3.6.3.5,5.1.3.2	ko:K01534,ko:K01784,ko:K10817,ko:K12443,ko:K15672	ko00052,ko00520,ko00522,ko01051,ko01052,ko01100,ko01130,map00052,map00520,map00522,map01051,map01052,map01100,map01130	M00361,M00362,M00632,M00774	R00291,R00918,R02984	RC00004,RC00289,RC02825,RC02826,RC02828,RC02829,RC02830,RC02831	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	3.A.3.6	-	-	Acyl_transf_1,Epimerase,HMA,KAsynt_C_assoc,KR,Ketoacyl-synt_C,PP-binding,PS-DH,VKOR,ketoacyl-synt
DYD1_k127_3071159_3	1408422.JHYF01000002_gene2590	3.499e-27	112.0	COG1561@1|root,COG1561@2|Bacteria,1TQHJ@1239|Firmicutes,24824@186801|Clostridia,36ED0@31979|Clostridiaceae	186801|Clostridia	S	tigr00255	yicC	-	-	-	-	-	-	-	-	-	-	-	DUF1732,YicC_N
DYD1_k127_3071159_1	1444711.CCJF01000005_gene1764	2.003e-63	223.0	COG0194@1|root,COG0194@2|Bacteria,2JG3V@204428|Chlamydiae	204428|Chlamydiae	F	Essential for recycling GMP and indirectly, cGMP	gmk	-	2.7.4.8	ko:K00942	ko00230,ko01100,map00230,map01100	M00050	R00332,R02090	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_kin
DYD1_k127_3071159_0	765952.PUV_18630	2.151e-264	831.0	COG0073@1|root,COG0143@1|root,COG0073@2|Bacteria,COG0143@2|Bacteria,2JFFM@204428|Chlamydiae	204428|Chlamydiae	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	metG	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1g,tRNA_bind
DYD1_k127_3071159_2	264201.pc0689	2.23e-40	151.0	COG0507@1|root,COG0507@2|Bacteria,2JFJU@204428|Chlamydiae	204428|Chlamydiae	L	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity	-	-	3.1.11.5	ko:K03581	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	AAA_30,HHH_4,HHH_5,UvrD_C_2
DYD1_k127_3090683_8	1469948.JPNB01000002_gene4067	4.345e-08	61.0	COG2931@1|root,COG2931@2|Bacteria,1TSGB@1239|Firmicutes,247TS@186801|Clostridia,36F14@31979|Clostridiaceae	186801|Clostridia	Q	PFAM Collagen triple helix repeat	-	-	-	-	-	-	-	-	-	-	-	-	Collagen
DYD1_k127_3090683_3	331113.SNE_A22770	1.195e-60	220.0	COG1215@1|root,COG1215@2|Bacteria,2JH6V@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_3090683_4	331113.SNE_A02170	1.463e-55	203.0	COG0632@1|root,COG0632@2|Bacteria,2JG4N@204428|Chlamydiae	204428|Chlamydiae	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	ruvA	-	3.6.4.12	ko:K03550	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HHH_5,RuvA_C,RuvA_N
DYD1_k127_3090683_5	1444711.CCJF01000005_gene328	2.251e-54	195.0	COG0817@1|root,COG0817@2|Bacteria,2JG3D@204428|Chlamydiae	204428|Chlamydiae	L	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	ruvC	-	3.1.22.4	ko:K01159	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvC
DYD1_k127_3090683_1	716544.wcw_1790	1.666e-109	364.0	COG0859@1|root,COG0859@2|Bacteria,2JFNJ@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyltransferase family 9 (heptosyltransferase)	rfaF	-	-	ko:K02843	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
DYD1_k127_3090683_2	331113.SNE_A02200	5.394e-75	273.0	COG0859@1|root,COG0859@2|Bacteria	2|Bacteria	M	ADP-heptose-lipopolysaccharide heptosyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_9,TPR_2
DYD1_k127_3090683_7	765952.PUV_25530	7.717e-33	145.0	COG4284@1|root,COG4284@2|Bacteria,2JFER@204428|Chlamydiae	204428|Chlamydiae	G	UDP-N-acetylglucosamine pyrophosphorylase	CP_1013	-	2.7.7.23,2.7.7.83	ko:K00972	ko00520,ko01100,ko01130,map00520,map01100,map01130	M00361,M00362	R00416	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPGP
DYD1_k127_3090683_0	331113.SNE_A02230	2.065e-121	397.0	COG0240@1|root,COG0240@2|Bacteria,2JFRP@204428|Chlamydiae	204428|Chlamydiae	I	Glycerol-3-phosphate dehydrogenase	gpsA	-	1.1.1.94	ko:K00057	ko00564,ko01110,map00564,map01110	-	R00842,R00844	RC00029	ko00000,ko00001,ko01000	-	-	-	NAD_Gly3P_dh_C,NAD_Gly3P_dh_N
DYD1_k127_3090683_6	331113.SNE_A02240	3.255e-33	134.0	COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,2JFGW@204428|Chlamydiae	204428|Chlamydiae	H	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	nnrD	-	4.2.1.136,5.1.99.6	ko:K17758,ko:K17759	-	-	-	-	ko00000,ko01000	-	-	-	Carb_kinase,YjeF_N
DYD1_k127_31018_1	331113.SNE_A18970	3.519e-24	111.0	COG1714@1|root,COG1714@2|Bacteria	2|Bacteria	S	RDD family	-	-	-	-	-	-	-	-	-	-	-	-	DUF4339,MerR_1,RDD
DYD1_k127_31018_0	240292.Ava_4664	0.0	1035.0	COG0045@1|root,COG1042@1|root,COG1670@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,COG1670@2|Bacteria,1G2D3@1117|Cyanobacteria,1HIIK@1161|Nostocales	1117|Cyanobacteria	CJ	TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain	-	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
DYD1_k127_3108558_4	634500.EbC_10020	3.707e-38	145.0	COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,1RPC3@1236|Gammaproteobacteria,3X684@551|Erwinia	1236|Gammaproteobacteria	C	Belongs to the heme-copper respiratory oxidase family	cyoB	GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009055,GO:0009060,GO:0009319,GO:0009486,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015453,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0016491,GO:0019646,GO:0020037,GO:0022804,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0043167,GO:0043169,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0048038,GO:0048039,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0070069,GO:0071944,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901363,GO:1902494,GO:1902600	1.10.3.10	ko:K02298	ko00190,ko01100,map00190,map01100	M00417	R11335	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.5	-	-	COX1
DYD1_k127_3108558_3	10228.TriadP35138	5.094e-68	236.0	COG1845@1|root,2S4Q5@2759|Eukaryota,3A7PT@33154|Opisthokonta,3BT3C@33208|Metazoa	33208|Metazoa	C	Cytochrome c oxidase subunit	-	-	-	-	-	-	-	-	-	-	-	-	COX3
DYD1_k127_3108558_5	331113.SNE_A16300	1.136e-30	124.0	COG3125@1|root,COG3125@2|Bacteria,2JGFM@204428|Chlamydiae	204428|Chlamydiae	C	Prokaryotic Cytochrome C oxidase subunit IV	cyoD	-	-	ko:K02300	ko00190,ko01100,map00190,map01100	M00417	-	-	ko00000,ko00001,ko00002	3.D.4.5	-	-	COX4_pro
DYD1_k127_3108558_6	7719.XP_009857954.1	1.638e-29	131.0	COG5599@1|root,KOG4228@2759|Eukaryota,38C1K@33154|Opisthokonta,3BJP8@33208|Metazoa,3CVMT@33213|Bilateria,487DP@7711|Chordata	33208|Metazoa	T	positive regulation of oligodendrocyte differentiation	-	-	3.1.3.48	ko:K18032	-	-	-	-	ko00000,ko01000,ko01009	-	-	-	Y_phosphatase
DYD1_k127_3108558_0	331113.SNE_A03720	1.151e-201	641.0	COG0473@1|root,COG0473@2|Bacteria,2JFP7@204428|Chlamydiae	204428|Chlamydiae	C	Isocitrate/isopropylmalate dehydrogenase	icd	-	1.1.1.42	ko:K00031	ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146	M00009,M00010,M00173,M00740	R00267,R00268,R01899	RC00001,RC00084,RC00114,RC00626,RC02801	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
DYD1_k127_3108558_2	716544.wcw_1729	9.251e-110	363.0	COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,2JFVE@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the SIS family. GutQ KpsF subfamily	kpsF	-	5.3.1.13	ko:K06041	ko00540,ko01100,map00540,map01100	M00063	R01530	RC00541	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CBS,SIS
DYD1_k127_3108558_1	391625.PPSIR1_30010	4.462e-139	454.0	COG1055@1|root,COG1055@2|Bacteria,1MUH8@1224|Proteobacteria,42KZP@68525|delta/epsilon subdivisions,2WKSV@28221|Deltaproteobacteria	28221|Deltaproteobacteria	P	Na H antiporter	-	-	-	-	-	-	-	-	-	-	-	-	CitMHS
DYD1_k127_3108558_7	331113.SNE_A23370	3.39e-23	113.0	COG3468@1|root,COG3468@2|Bacteria,2JHAK@204428|Chlamydiae	204428|Chlamydiae	MU	outer membrane autotransporter barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3125563_0	716544.wcw_0742	1.576e-78	271.0	COG1090@1|root,COG1090@2|Bacteria,2JFV6@204428|Chlamydiae	204428|Chlamydiae	S	Domain of unknown function (DUF1731)	-	-	-	ko:K07071	-	-	-	-	ko00000	-	-	-	DUF1731,Epimerase
DYD1_k127_3125563_4	349521.HCH_02916	2.035e-12	75.0	2A39Z@1|root,30RRY@2|Bacteria,1PAPY@1224|Proteobacteria,1SWCC@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	Yip1 domain	-	-	-	-	-	-	-	-	-	-	-	-	Yip1
DYD1_k127_3125563_3	331113.SNE_A11400	1.138e-28	124.0	2DNAV@1|root,32WHG@2|Bacteria	2|Bacteria	S	Yip1 domain	-	-	-	-	-	-	-	-	-	-	-	-	Yip1
DYD1_k127_3125563_2	331113.SNE_A11410	1.391e-36	145.0	2DR86@1|root,33AMR@2|Bacteria,2JHI9@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3125563_1	1437425.CSEC_0966	1.142e-38	156.0	2DUU3@1|root,33S9I@2|Bacteria,2JGYS@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3125563_5	1401065.HMPREF2130_04820	4.852e-07	53.0	COG0497@1|root,COG0497@2|Bacteria,1MUNP@1224|Proteobacteria,2VHHA@28216|Betaproteobacteria,3T2NZ@506|Alcaligenaceae	28216|Betaproteobacteria	L	May be involved in recombinational repair of damaged DNA	recN	-	-	ko:K03631	-	-	-	-	ko00000,ko03400	-	-	-	SMC_N
DYD1_k127_3140582_0	1444711.CCJF01000004_gene1955	2.061e-153	495.0	COG0124@1|root,COG0124@2|Bacteria,2JFJ0@204428|Chlamydiae	204428|Chlamydiae	J	histidyl-tRNA synthetase	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_His
DYD1_k127_3140582_2	331113.SNE_A21670	4.36e-15	79.0	COG0545@1|root,COG0545@2|Bacteria,2JFN0@204428|Chlamydiae	204428|Chlamydiae	M	Peptidyl-prolyl cis-trans	mip	-	5.2.1.8	ko:K01802	-	-	-	-	ko00000,ko01000	-	-	-	FKBP_C,FKBP_N
DYD1_k127_3140582_1	1444712.BN1013_00945	2.221e-61	215.0	COG0219@1|root,COG0219@2|Bacteria,2JG5G@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily	cspR	-	2.1.1.207	ko:K03216	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	SpoU_methylase
DYD1_k127_314671_1	1444711.CCJF01000005_gene1190	3.002e-163	527.0	COG2239@1|root,COG2239@2|Bacteria,2JFJ8@204428|Chlamydiae	204428|Chlamydiae	P	Acts as a magnesium transporter	-	-	-	ko:K06213	-	-	-	-	ko00000,ko02000	1.A.26.1	-	-	CBS,MgtE,MgtE_N
DYD1_k127_314671_0	264201.pc1116	2.008e-281	875.0	COG1217@1|root,COG1217@2|Bacteria,2JFS9@204428|Chlamydiae	204428|Chlamydiae	T	Elongation factor G C-terminus	typA	-	-	ko:K06207	-	-	-	-	ko00000	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2
DYD1_k127_3147250_1	1444711.CCJF01000004_gene2400	3.667e-26	118.0	COG0563@1|root,COG0563@2|Bacteria	2|Bacteria	F	adenylate kinase activity	adk	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ADK,ADK_lid
DYD1_k127_3147250_0	1123355.JHYO01000011_gene1454	1.184e-147	487.0	COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2UQAG@28211|Alphaproteobacteria,36XKR@31993|Methylocystaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	atm1	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
DYD1_k127_3147250_2	312284.A20C1_08233	3.266e-22	111.0	COG0160@1|root,COG0160@2|Bacteria,2GIS9@201174|Actinobacteria	201174|Actinobacteria	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	gabT	-	2.6.1.19	ko:K00823	ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120	M00027	R00908,R01648	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD1_k127_3147250_4	483218.BACPEC_03077	2.368e-20	108.0	COG0160@1|root,COG0160@2|Bacteria,1VS6F@1239|Firmicutes,24YI0@186801|Clostridia	186801|Clostridia	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.19	ko:K00823	ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120	M00027	R00908,R01648	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD1_k127_3147250_5	614083.AWQR01000022_gene81	1.131e-18	102.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2VKRZ@28216|Betaproteobacteria,4AAEX@80864|Comamonadaceae	28216|Betaproteobacteria	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.18	ko:K00822	ko00280,ko00410,ko00640,ko01100,map00280,map00410,map00640,map01100	-	R00907,R04187	RC00008,RC00062,RC00160	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
DYD1_k127_3147250_3	1316927.ATKI01000039_gene2388	1.197e-20	106.0	COG0160@1|root,COG0160@2|Bacteria,1MWY6@1224|Proteobacteria,1RQKU@1236|Gammaproteobacteria,1YT10@136843|Pseudomonas fluorescens group	1236|Gammaproteobacteria	E	Aminotransferase class-III	dat	-	2.6.1.76	ko:K00836	ko00260,ko01100,ko01120,ko01210,ko01230,map00260,map01100,map01120,map01210,map01230	M00033	R06977	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD1_k127_3168045_1	765952.PUV_06830	7.083e-97	325.0	COG0793@1|root,COG0793@2|Bacteria,2JFDY@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the peptidase S41A family	tsp	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ,PDZ_2,Peptidase_S41
DYD1_k127_3168045_2	82654.Pse7367_3539	3.463e-25	109.0	COG3654@1|root,COG3654@2|Bacteria,1G71M@1117|Cyanobacteria,1HBPW@1150|Oscillatoriales	1117|Cyanobacteria	S	PFAM Filamentation induced by cAMP death on curing-related	-	-	-	ko:K07341	-	-	-	-	ko00000,ko02048	-	-	-	Fic
DYD1_k127_3183414_2	264201.pc0815	1.408e-52	190.0	COG1136@1|root,COG1136@2|Bacteria,2JFYR@204428|Chlamydiae	204428|Chlamydiae	V	system ATP-binding protein LolD	lolD	-	-	ko:K09810	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.125	-	-	ABC_tran
DYD1_k127_3183414_0	331113.SNE_A09460	4.123e-118	395.0	COG4591@1|root,COG4591@2|Bacteria,2JHHC@204428|Chlamydiae	204428|Chlamydiae	M	FtsX-like permease family	-	-	-	ko:K09808	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.125	-	-	FtsX
DYD1_k127_3183414_3	331113.SNE_A09470	5.056e-18	85.0	COG0267@1|root,COG0267@2|Bacteria,2JGJK@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the bacterial ribosomal protein bL33 family	rpmG	-	-	ko:K02913	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L33
DYD1_k127_3183414_1	1437425.CSEC_0771	4.763e-108	359.0	COG0533@1|root,COG0533@2|Bacteria,2JFFE@204428|Chlamydiae	204428|Chlamydiae	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	tsaD	-	2.3.1.234	ko:K01409	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
DYD1_k127_3183414_4	169963.lmo1079	5.674e-05	51.0	COG4485@1|root,COG4485@2|Bacteria,1TPVY@1239|Firmicutes,4HD9X@91061|Bacilli,26MB6@186820|Listeriaceae	91061|Bacilli	S	Bacterial membrane protein YfhO	yfhO	-	-	-	-	-	-	-	-	-	-	-	YfhO
DYD1_k127_3189042_2	264201.pc0751	6.692e-49	191.0	2DE6Q@1|root,2ZKQS@2|Bacteria,2JHE7@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3189042_3	765952.PUV_23760	0.0002964	44.0	COG4043@1|root,COG4043@2|Bacteria	2|Bacteria	-	-	nudA	-	-	-	-	-	-	-	-	-	-	-	ASCH,NUDIX
DYD1_k127_3189042_1	1444711.CCJF01000005_gene901	2.095e-76	265.0	COG3108@1|root,COG3108@2|Bacteria,2JG29@204428|Chlamydiae	204428|Chlamydiae	S	Peptidase M15	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M15_3
DYD1_k127_3189042_0	1437425.CSEC_0145	1.061e-97	334.0	COG5000@1|root,COG5000@2|Bacteria,2JHI0@204428|Chlamydiae	204428|Chlamydiae	T	PAS domain	-	-	2.7.13.3	ko:K07710	ko02020,map02020	M00500	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA
DYD1_k127_3215646_0	331113.SNE_A11180	2.706e-37	143.0	COG0563@1|root,COG0563@2|Bacteria,2JH6Z@204428|Chlamydiae	204428|Chlamydiae	F	adenylate kinase	-	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ADK
DYD1_k127_3215646_1	1229831.M832_02340	6.976e-35	134.0	COG0633@1|root,COG0633@2|Bacteria,2JGF0@204428|Chlamydiae	204428|Chlamydiae	C	2Fe-2S iron-sulfur cluster binding domain	fdxC	-	-	-	-	-	-	-	-	-	-	-	Fer2
DYD1_k127_3215646_2	331113.SNE_A11160	3.043e-06	49.0	COG0316@1|root,COG0316@2|Bacteria,2JFY5@204428|Chlamydiae	204428|Chlamydiae	S	Domain of unknown function (DUF1858)	iscA	-	-	-	-	-	-	-	-	-	-	-	DUF1858,Fe-S_biosyn
DYD1_k127_322463_0	5932.XP_004023960.1	1.642e-96	326.0	COG0462@1|root,KOG1448@2759|Eukaryota,3ZAN6@5878|Ciliophora	5878|Ciliophora	EF	N-terminal domain of ribose phosphate pyrophosphokinase	-	-	2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyl_synth,Pribosyltran_N
DYD1_k127_322463_1	1519464.HY22_03040	1.131e-11	66.0	COG1051@1|root,COG1051@2|Bacteria	2|Bacteria	F	GDP-mannose mannosyl hydrolase activity	nudF1	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
DYD1_k127_3294434_2	264201.pc0259	4.856e-61	221.0	COG1108@1|root,COG1108@2|Bacteria,2JFM1@204428|Chlamydiae	204428|Chlamydiae	P	transport system membrane protein	ytgD	-	-	ko:K11709	ko02010,map02010	M00319	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.15	-	-	ABC-3
DYD1_k127_3294434_0	264201.pc0260	6.122e-138	448.0	COG0743@1|root,COG0743@2|Bacteria,2JFM0@204428|Chlamydiae	204428|Chlamydiae	I	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)	dxr	-	1.1.1.267	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05688	RC01452	ko00000,ko00001,ko00002,ko01000	-	-	-	DXPR_C,DXP_redisom_C,DXP_reductoisom
DYD1_k127_3294434_1	716544.wcw_0357	1.189e-63	221.0	COG0750@1|root,COG0750@2|Bacteria,2JFMQ@204428|Chlamydiae	204428|Chlamydiae	M	zinc metalloprotease	rseP	-	-	ko:K11749	ko02024,ko04112,map02024,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M50
DYD1_k127_3302983_7	926564.KI911625_gene4029	2.28e-19	97.0	COG0242@1|root,COG0242@2|Bacteria,2GNZ9@201174|Actinobacteria,4F4G9@85017|Promicromonosporaceae	201174|Actinobacteria	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	def	GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564	3.5.1.88	ko:K01462	-	-	-	-	ko00000,ko01000	-	-	-	Pep_deformylase
DYD1_k127_3302983_6	331113.SNE_A04440	4.352e-20	98.0	COG2518@1|root,COG2518@2|Bacteria	2|Bacteria	O	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	-	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	Methyltransf_25,Methyltransf_31,rRNA_methylase
DYD1_k127_3302983_1	765952.PUV_21400	2.886e-61	221.0	COG1073@1|root,COG1073@2|Bacteria	2|Bacteria	S	thiolester hydrolase activity	-	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	BAAT_C,Bile_Hydr_Trans
DYD1_k127_3302983_2	716544.wcw_0559	1.529e-58	211.0	COG1878@1|root,COG1878@2|Bacteria,2JGBB@204428|Chlamydiae	204428|Chlamydiae	K	Putative cyclase	-	-	3.5.1.9	ko:K07130	ko00380,ko00630,ko01100,map00380,map00630,map01100	M00038	R00988,R01959,R04911	RC00263,RC00323	ko00000,ko00001,ko00002,ko01000	-	-	-	Cyclase
DYD1_k127_3302983_3	1121285.AUFK01000018_gene636	4.013e-52	198.0	COG4188@1|root,COG4188@2|Bacteria,4NHAZ@976|Bacteroidetes,1I5YR@117743|Flavobacteriia,3ZT6Z@59732|Chryseobacterium	976|Bacteroidetes	S	Platelet-activating factor acetylhydrolase, isoform II	-	-	-	-	-	-	-	-	-	-	-	-	PAF-AH_p_II
DYD1_k127_3302983_5	709032.Sulku_0548	6.199e-34	135.0	COG3012@1|root,COG3012@2|Bacteria,1Q5V3@1224|Proteobacteria,42UFW@68525|delta/epsilon subdivisions,2YPTX@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	S	SEC-C motif	-	-	-	ko:K09858	-	-	-	-	ko00000	-	-	-	SEC-C
DYD1_k127_3302983_0	765952.PUV_04630	5.3e-127	418.0	COG1114@1|root,COG1114@2|Bacteria,2JGMS@204428|Chlamydiae	204428|Chlamydiae	E	Branched-chain amino acid transport protein	-	-	-	-	-	-	-	-	-	-	-	-	Branch_AA_trans
DYD1_k127_3302983_4	1047013.AQSP01000142_gene222	3.306e-41	158.0	COG1680@1|root,COG1680@2|Bacteria,2NNSA@2323|unclassified Bacteria	2|Bacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase,DUF3471
DYD1_k127_330937_2	1174504.AJTN02000248_gene3771	5.636e-40	155.0	COG0424@1|root,COG0424@2|Bacteria,1V6FH@1239|Firmicutes,4HIMK@91061|Bacilli,1ZGDP@1386|Bacillus	91061|Bacilli	D	septum formation protein Maf	maf	GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0030428,GO:0032506,GO:0044085,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0090529,GO:1902410,GO:1903047	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
DYD1_k127_330937_1	331113.SNE_A08970	2.051e-133	444.0	COG1413@1|root,COG1413@2|Bacteria,2JFT5@204428|Chlamydiae	204428|Chlamydiae	C	lyase activity	CP_0755	-	-	-	-	-	-	-	-	-	-	-	HEAT_2
DYD1_k127_330937_0	331113.SNE_A08960	8.485e-151	501.0	COG1452@1|root,COG1452@2|Bacteria,2JFGN@204428|Chlamydiae	204428|Chlamydiae	M	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane	CP_0756	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_330937_3	1242864.D187_005303	4.069e-28	116.0	COG1063@1|root,COG1063@2|Bacteria,1NXSN@1224|Proteobacteria,438FZ@68525|delta/epsilon subdivisions,2X3QX@28221|Deltaproteobacteria,2YWVR@29|Myxococcales	28221|Deltaproteobacteria	E	Glucose dehydrogenase C-terminus	gcd	-	-	-	-	-	-	-	-	-	-	-	ADH_N,Glu_dehyd_C
DYD1_k127_3314896_0	671143.DAMO_0963	3.453e-120	394.0	COG3696@1|root,COG3696@2|Bacteria,2NNKZ@2323|unclassified Bacteria	2|Bacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	cusA	-	-	ko:K07787,ko:K15726	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.2,2.A.6.1.4	-	iAF987.Gmet_1547	ACR_tran
DYD1_k127_3332231_0	765952.PUV_02450	5.567e-115	385.0	COG0553@1|root,COG0553@2|Bacteria,2JFHJ@204428|Chlamydiae	204428|Chlamydiae	L	swi snf helicase family	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,SNF2_N
DYD1_k127_3332231_3	338966.Ppro_1338	1.379e-26	114.0	COG0350@1|root,COG0350@2|Bacteria,1N2YQ@1224|Proteobacteria,42TN9@68525|delta/epsilon subdivisions,2WRG0@28221|Deltaproteobacteria,43VFA@69541|Desulfuromonadales	28221|Deltaproteobacteria	H	6-O-methylguanine DNA methyltransferase, DNA binding domain	ogt	-	2.1.1.63	ko:K00567	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_binding_1,Methyltransf_1N
DYD1_k127_3332231_1	765952.PUV_11720	1.489e-70	251.0	COG2849@1|root,COG2849@2|Bacteria,2JG13@204428|Chlamydiae	204428|Chlamydiae	S	repeat protein	CP_0153	-	-	-	-	-	-	-	-	-	-	-	MORN_2
DYD1_k127_3332231_2	1444712.BN1013_00929	8.396e-38	147.0	COG0072@1|root,COG0072@2|Bacteria,2JFCR@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	pheT	-	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	B3_4,B5,FDX-ACB,tRNA_bind
DYD1_k127_335236_0	264201.pc0728	3.441e-140	451.0	COG0542@1|root,COG0542@2|Bacteria,2JFW9@204428|Chlamydiae	204428|Chlamydiae	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD1_k127_335236_3	1444712.BN1013_01211	3.076e-42	159.0	COG2912@1|root,COG2912@2|Bacteria,2JFGS@204428|Chlamydiae	204428|Chlamydiae	S	Transglutaminase-like superfamily	CP_0628	-	-	-	-	-	-	-	-	-	-	-	TPR_8,Transglut_core2
DYD1_k127_335236_1	331113.SNE_A17720	1.65e-115	381.0	COG0457@1|root,COG2912@1|root,COG0457@2|Bacteria,COG2912@2|Bacteria,2JFGS@204428|Chlamydiae	204428|Chlamydiae	S	Transglutaminase-like superfamily	CP_0628	-	-	-	-	-	-	-	-	-	-	-	TPR_8,Transglut_core2
DYD1_k127_335236_6	148304.MAPG_09010T0	6.107e-06	54.0	COG0553@1|root,KOG0298@2759|Eukaryota,38QEB@33154|Opisthokonta,3NW30@4751|Fungi,3QPWM@4890|Ascomycota,218BP@147550|Sordariomycetes,41JUQ@639021|Magnaporthales	4751|Fungi	L	ATP-dependent DNA helicase	-	GO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0004386,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019787,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0036211,GO:0042623,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045003,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564	2.3.2.27	ko:K15710	-	-	-	-	ko00000,ko01000,ko04121	-	-	-	Helicase_C,SNF2_N,zf-C3HC4,zf-C3HC4_2,zf-C3HC4_3,zf-RING_2
DYD1_k127_335236_2	331113.SNE_A17880	1.216e-114	383.0	COG1640@1|root,COG1640@2|Bacteria,2JFE9@204428|Chlamydiae	204428|Chlamydiae	G	4-alpha-glucanotransferase	malQ	-	2.4.1.25	ko:K00705	ko00500,ko01100,map00500,map01100	-	R05196	RC00049	ko00000,ko00001,ko01000	-	GH77	-	Glyco_hydro_77
DYD1_k127_335236_4	156889.Mmc1_3670	2.438e-14	74.0	COG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2TRC8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	dus	-	-	ko:K05540	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
DYD1_k127_3372838_0	1444711.CCJF01000005_gene1664	2.319e-118	386.0	COG1092@1|root,COG1092@2|Bacteria,2JFKR@204428|Chlamydiae	204428|Chlamydiae	J	S-adenosylmethionine-dependent methyltransferase	-	-	2.1.1.191	ko:K06969	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_SAM
DYD1_k127_3372838_1	671143.DAMO_1059	3.933e-51	192.0	COG0451@1|root,COG0451@2|Bacteria	2|Bacteria	GM	ADP-glyceromanno-heptose 6-epimerase activity	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase,NAD_binding_10
DYD1_k127_3372838_3	211114.JOEF01000008_gene1320	2.734e-06	59.0	COG3568@1|root,COG3568@2|Bacteria,2GNC4@201174|Actinobacteria,4DYVI@85010|Pseudonocardiales	201174|Actinobacteria	S	Endonuclease/Exonuclease/phosphatase family	-	-	3.1.4.12,3.1.4.3	ko:K01114,ko:K01117	ko00562,ko00564,ko00565,ko00600,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map00600,map01100,map01110,map02024,map04919	-	R01312,R02027,R02052,R02541,R03332,R07381	RC00017,RC00425	ko00000,ko00001,ko01000,ko02042	-	-	-	Exo_endo_phos
DYD1_k127_3372838_2	673862.BABL1_731	2.775e-40	165.0	COG2723@1|root,COG2723@2|Bacteria,1MWG6@1224|Proteobacteria,42UR5@68525|delta/epsilon subdivisions,2WQET@28221|Deltaproteobacteria	28221|Deltaproteobacteria	G	Belongs to the glycosyl hydrolase 1 family	bglA	-	3.2.1.21	ko:K05350	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	-	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000	-	-	-	Glyco_hydro_1
DYD1_k127_3379883_1	331113.SNE_A06010	6.779e-61	213.0	COG0037@1|root,COG0037@2|Bacteria,2JFSJ@204428|Chlamydiae	204428|Chlamydiae	H	Belongs to the TtcA family	ttcA	-	-	-	-	-	-	-	-	-	-	-	ATP_bind_3
DYD1_k127_3379883_0	331113.SNE_A06000	9.314e-166	534.0	COG0591@1|root,COG0591@2|Bacteria,2JFMA@204428|Chlamydiae	204428|Chlamydiae	E	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	putP	-	-	ko:K11928	-	-	-	-	ko00000,ko02000	2.A.21.2	-	-	SSF
DYD1_k127_3391419_2	331113.SNE_A05090	5.213e-15	85.0	COG3468@1|root,COG3468@2|Bacteria	2|Bacteria	MU	cell adhesion	-	-	-	ko:K02024	-	-	-	-	ko00000,ko02000	1.B.3.1.1	-	-	Autotransporter,NIDO,OMP_b-brl,VPEP
DYD1_k127_3391419_1	331113.SNE_A08500	3.286e-27	124.0	COG3468@1|root,COG3468@2|Bacteria,2JGG3@204428|Chlamydiae	204428|Chlamydiae	MU	outer membrane autotransporter barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3391419_0	331113.SNE_A23420	4.447e-36	151.0	COG3468@1|root,COG3468@2|Bacteria,2JHAK@204428|Chlamydiae	204428|Chlamydiae	MU	outer membrane autotransporter barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3399670_0	765952.PUV_01320	1.742e-160	511.0	COG1186@1|root,COG1186@2|Bacteria,2JFVB@204428|Chlamydiae	204428|Chlamydiae	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	prfB	-	-	ko:K02836	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD1_k127_3399670_4	331113.SNE_A18770	7.892e-47	173.0	COG1670@1|root,COG1670@2|Bacteria,2JHHU@204428|Chlamydiae	204428|Chlamydiae	J	Acetyltransferase (GNAT) domain	-	-	-	ko:K03825	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1
DYD1_k127_3399670_3	1444711.CCJF01000005_gene964	7.372e-50	182.0	COG1670@1|root,COG1670@2|Bacteria,2JGRB@204428|Chlamydiae	204428|Chlamydiae	J	FR47-like protein	-	-	-	ko:K03825	-	-	-	-	ko00000,ko01000	-	-	-	-
DYD1_k127_3399670_5	378806.STAUR_6859	1.205e-31	132.0	COG1451@1|root,COG1451@2|Bacteria,1P1X1@1224|Proteobacteria,4314C@68525|delta/epsilon subdivisions,2WX53@28221|Deltaproteobacteria,2YY4V@29|Myxococcales	28221|Deltaproteobacteria	S	nucleotide metabolic process	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3399670_1	264201.pc1328	1.34e-98	327.0	COG0217@1|root,COG0217@2|Bacteria,2JFMK@204428|Chlamydiae	204428|Chlamydiae	K	Transcriptional Regulatory Protein	CP_0176	-	-	-	-	-	-	-	-	-	-	-	Transcrip_reg
DYD1_k127_3399670_2	716544.wcw_0398	1.804e-50	187.0	COG1025@1|root,COG1025@2|Bacteria,2JFKH@204428|Chlamydiae	204428|Chlamydiae	O	insulinase family	ide	-	3.4.24.56	ko:K01408	ko05010,map05010	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C,Peptidase_M16_M
DYD1_k127_3407197_1	331113.SNE_A19590	1.129e-18	89.0	COG0544@1|root,COG0544@2|Bacteria,2JG2G@204428|Chlamydiae	204428|Chlamydiae	D	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase	tig	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K03545	-	-	-	-	ko00000	-	-	-	Trigger_C,Trigger_N
DYD1_k127_3407197_0	331113.SNE_A19580	1.525e-229	731.0	COG0553@1|root,COG4715@1|root,COG0553@2|Bacteria,COG4715@2|Bacteria,2JFDP@204428|Chlamydiae	204428|Chlamydiae	KL	SNF2 family	CP_1020	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,SNF2_N,SNF2_assoc,SWIM
DYD1_k127_3413011_0	765952.PUV_10100	6.848e-175	563.0	COG0557@1|root,COG0557@2|Bacteria,2JFD4@204428|Chlamydiae	204428|Chlamydiae	J	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	rnr	-	-	ko:K12573	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	OB_RNB,RNB,S1
DYD1_k127_3413011_2	4950.XP_003680152.1	2.961e-54	196.0	COG2094@1|root,KOG4486@2759|Eukaryota,39RQW@33154|Opisthokonta	33154|Opisthokonta	L	DNA-7-methyladenine glycosylase activity	-	-	-	-	-	-	-	-	-	-	-	-	Pur_DNA_glyco
DYD1_k127_3413011_1	1229831.M832_00690	1.749e-54	198.0	COG2928@1|root,COG2928@2|Bacteria,2JFZV@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF502)	CP_0247	-	-	-	-	-	-	-	-	-	-	-	DUF502
DYD1_k127_3413011_3	716544.wcw_1044	6.963e-37	147.0	COG2928@1|root,COG2928@2|Bacteria,2JFZV@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF502)	CP_0247	-	-	-	-	-	-	-	-	-	-	-	DUF502
DYD1_k127_3413011_7	716544.wcw_1042	1.73e-17	87.0	COG2927@1|root,COG2927@2|Bacteria,2JH53@204428|Chlamydiae	204428|Chlamydiae	L	DNA polymerase III chi subunit, HolC	-	-	2.7.7.7	ko:K02339	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_chi
DYD1_k127_3413011_8	765952.PUV_10440	4.474e-09	59.0	28VZS@1|root,2ZI0Y@2|Bacteria,2JHGC@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3413011_5	331113.SNE_A09080	2.938e-21	94.0	2DNTM@1|root,32Z31@2|Bacteria,2JGEE@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3413011_4	765952.PUV_10420	1.86e-32	128.0	COG0319@1|root,COG0319@2|Bacteria,2JG8S@204428|Chlamydiae	204428|Chlamydiae	J	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	ybeY	-	-	ko:K07042	-	-	-	-	ko00000,ko03009	-	-	-	UPF0054
DYD1_k127_3413011_6	1444711.CCJF01000005_gene1255	1.316e-17	91.0	COG1253@1|root,COG1253@2|Bacteria,2JFV2@204428|Chlamydiae	204428|Chlamydiae	S	Domain protein	tlyC_2	-	-	-	-	-	-	-	-	-	-	-	CBS,CorC_HlyC,DUF21
DYD1_k127_3441_0	331113.SNE_A14700	2.33e-245	782.0	COG0457@1|root,COG0515@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,2JFQ8@204428|Chlamydiae	204428|Chlamydiae	F	Together with the serine threonine kinase Pkn1, may play a role in the specific interactions with host proteins during intracellular growth	pknD	-	2.7.11.1	ko:K08884,ko:K12132	-	-	-	-	ko00000,ko01000,ko01001	-	-	-	Pkinase
DYD1_k127_3453147_0	264201.pc1081	3.109e-92	316.0	COG0706@1|root,COG0706@2|Bacteria,2JFUV@204428|Chlamydiae	204428|Chlamydiae	U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins	yidC	-	-	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9	-	-	60KD_IMP
DYD1_k127_3453147_1	331113.SNE_A14320	1.349e-85	295.0	COG0457@1|root,COG0457@2|Bacteria,2JFDZ@204428|Chlamydiae	204428|Chlamydiae	S	Tetratricopeptide repeat	CP_0471	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_8
DYD1_k127_3454794_1	331113.SNE_B24090	8.352e-49	180.0	COG5340@1|root,COG5340@2|Bacteria	2|Bacteria	K	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_4
DYD1_k127_3454794_0	1444712.BN1013_02291	1.237e-141	453.0	COG0017@1|root,COG2606@1|root,COG0017@2|Bacteria,COG2606@2|Bacteria,2JGS0@204428|Chlamydiae	204428|Chlamydiae	J	Aminoacyl-tRNA editing domain	-	-	6.1.1.23	ko:K09759	ko00970,map00970	M00360	R03647,R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_2,tRNA_anti-codon,tRNA_edit
DYD1_k127_3455784_2	331113.SNE_A11980	9.913e-66	235.0	COG0169@1|root,COG0710@1|root,COG0169@2|Bacteria,COG0710@2|Bacteria,2JFIF@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	aroE	GO:0000166,GO:0003674,GO:0003824,GO:0003855,GO:0004764,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25,4.2.1.10	ko:K13832	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413,R03084	RC00206,RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_I,Shikimate_DH,Shikimate_dh_N
DYD1_k127_3455784_0	1437425.CSEC_0587	5.452e-216	683.0	COG1190@1|root,COG1190@2|Bacteria,2JFIC@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class-II aminoacyl-tRNA synthetase family	lysS	-	6.1.1.6	ko:K04567	ko00970,map00970	M00359,M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_2,tRNA_anti-codon
DYD1_k127_3455784_3	264201.pc1234	1.554e-05	50.0	28YEX@1|root,34BF2@2|Bacteria,2JH88@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3455784_1	1444711.CCJF01000005_gene1077	4.116e-107	353.0	COG0215@1|root,COG0215@2|Bacteria,2JFNB@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class-I aminoacyl-tRNA synthetase family	cysS	-	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_2,tRNA-synt_1e
DYD1_k127_3557741_2	331113.SNE_B24100	2.296e-26	113.0	COG2253@1|root,COG2253@2|Bacteria,2JGE7@204428|Chlamydiae	204428|Chlamydiae	S	Nucleotidyl transferase AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AbiEii
DYD1_k127_3557741_0	1528098.NOVO_01600	1.078e-73	263.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TQVP@28211|Alphaproteobacteria,47F3Y@766|Rickettsiales	766|Rickettsiales	EGP	Major facilitator	proP6	-	-	ko:K03762	-	-	-	-	ko00000,ko02000	2.A.1.6.4	-	-	MFS_1,Sugar_tr
DYD1_k127_3557741_1	716544.wcw_0685	8.399e-44	164.0	COG0465@1|root,COG0465@2|Bacteria,2JFFV@204428|Chlamydiae	204428|Chlamydiae	D	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,Peptidase_M41
DYD1_k127_3561072_0	1437425.CSEC_1480	7.243e-25	120.0	COG2911@1|root,COG2911@2|Bacteria	2|Bacteria	S	protein secretion	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3561072_1	1444711.CCJF01000005_gene560	6.319e-22	107.0	COG3210@1|root,COG3210@2|Bacteria,2JGA4@204428|Chlamydiae	204428|Chlamydiae	U	Inverse autotransporter, beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	IAT_beta
DYD1_k127_3561072_3	716544.wcw_0028	1.019e-10	75.0	COG0545@1|root,COG0545@2|Bacteria,2JH1W@204428|Chlamydiae	204428|Chlamydiae	O	FKBP-type peptidyl-prolyl cis-trans isomerase	-	-	-	-	-	-	-	-	-	-	-	-	FKBP_C
DYD1_k127_3561072_2	1444712.BN1013_02118	4.208e-14	86.0	2EU3I@1|root,33QAB@2|Bacteria,2JGRS@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3561711_3	331113.SNE_A18460	1.11e-59	215.0	COG1506@1|root,COG1506@2|Bacteria,2JHHT@204428|Chlamydiae	204428|Chlamydiae	E	peptidase	-	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	-
DYD1_k127_3561711_1	331113.SNE_A18470	2.256e-103	347.0	COG0763@1|root,COG0763@2|Bacteria,2JFD2@204428|Chlamydiae	204428|Chlamydiae	M	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxB	-	2.4.1.182	ko:K00748	ko00540,ko01100,map00540,map01100	M00060	R04606	RC00005,RC00059	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT19	-	LAB_N,LpxB
DYD1_k127_3561711_4	331113.SNE_A18520	1.268e-33	134.0	COG1399@1|root,COG1399@2|Bacteria,2JGEY@204428|Chlamydiae	204428|Chlamydiae	S	metal-binding, possibly nucleic acid-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3561711_2	331113.SNE_A18530	6.412e-85	293.0	COG0416@1|root,COG0416@2|Bacteria,2JFZ7@204428|Chlamydiae	204428|Chlamydiae	I	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA	plsX	-	2.3.1.15	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FA_synthesis
DYD1_k127_3561711_0	1444711.CCJF01000005_gene979	1.029e-242	758.0	COG1530@1|root,COG1530@2|Bacteria,2JFU4@204428|Chlamydiae	204428|Chlamydiae	J	ribonuclease G	rng	-	-	ko:K08301	-	-	-	-	ko00000,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
DYD1_k127_3561711_5	331113.SNE_A18550	6.387e-26	112.0	COG0204@1|root,COG0204@2|Bacteria,2JFD3@204428|Chlamydiae	204428|Chlamydiae	I	Acyltransferase	plsB	-	2.3.1.15	ko:K00630	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyltransferase
DYD1_k127_3567402_0	331113.SNE_A22850	1.083e-140	454.0	COG0022@1|root,COG0022@2|Bacteria,2JFIU@204428|Chlamydiae	2|Bacteria	C	Pyruvate dehydrogenase E1	acoB	-	1.2.4.1	ko:K00162,ko:K21417	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C
DYD1_k127_3567402_1	316058.RPB_3808	2.968e-97	329.0	COG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,2U6XP@28211|Alphaproteobacteria,3K406@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Dehydrogenase E1 component	-	-	1.2.4.1	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	E1_dh
DYD1_k127_3567402_2	1400524.KL370779_gene619	1.568e-36	149.0	COG0300@1|root,COG0300@2|Bacteria,1NYHT@1224|Proteobacteria,2UTXW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD1_k127_358812_1	1125725.HMPREF1325_1319	9.827e-14	78.0	COG0863@1|root,COG0863@2|Bacteria	2|Bacteria	L	N-4 methylation of cytosine	-	-	2.1.1.72	ko:K07319	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	N6_N4_Mtase,ParBc
DYD1_k127_358812_0	608538.HTH_0534	2.379e-18	94.0	COG0639@1|root,COG0639@2|Bacteria	2|Bacteria	T	phosphoprotein phosphatase activity	-	-	3.1.3.16	ko:K07313	-	-	-	-	ko00000,ko01000	-	-	-	Metallophos,Metallophos_2
DYD1_k127_3609141_0	264201.pc0313	6.911e-129	421.0	COG0768@1|root,COG0768@2|Bacteria,2JFH0@204428|Chlamydiae	204428|Chlamydiae	M	penicillin-binding protein	pbp3	-	3.4.16.4	ko:K03587	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011,ko03036	-	-	-	PBP_dimer,Transpeptidase
DYD1_k127_3609141_1	765952.PUV_19630	1.618e-81	280.0	COG0275@1|root,COG0275@2|Bacteria,2JFV8@204428|Chlamydiae	204428|Chlamydiae	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	rsmH	-	2.1.1.199	ko:K03438	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltransf_5
DYD1_k127_3609141_2	331113.SNE_A04940	3.611e-55	198.0	COG2001@1|root,COG2001@2|Bacteria	2|Bacteria	K	Belongs to the MraZ family	mraZ	GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141	-	ko:K03925	-	-	-	-	ko00000	-	-	-	MraZ
DYD1_k127_3641288_0	583355.Caka_2558	6.059e-204	644.0	COG0442@1|root,COG0442@2|Bacteria,46SE3@74201|Verrucomicrobia	74201|Verrucomicrobia	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro)	proS	-	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,ProRS-C_1,tRNA-synt_2b
DYD1_k127_3641288_2	331113.SNE_A04550	2.704e-66	233.0	COG0095@1|root,COG0095@2|Bacteria,2JG15@204428|Chlamydiae	204428|Chlamydiae	H	Biotin/lipoate A/B protein ligase family	lplA_1	-	6.3.1.20	ko:K03800	ko00785,ko01100,map00785,map01100	-	R07770,R07771,R11143	RC00043,RC00070,RC00090,RC00992,RC02896	ko00000,ko00001,ko01000	-	-	-	BPL_LplA_LipB
DYD1_k127_3641288_1	765952.PUV_04840	4.157e-77	259.0	COG0542@1|root,COG0542@2|Bacteria,2JFSM@204428|Chlamydiae	204428|Chlamydiae	O	ATP-dependent Clp protease ATP-binding subunit	clpC	-	-	ko:K03696	ko01100,map01100	-	-	-	ko00000,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N,UVR
DYD1_k127_3641545_6	765952.PUV_22230	2.986e-06	50.0	COG0760@1|root,COG0760@2|Bacteria,2JG1Y@204428|Chlamydiae	204428|Chlamydiae	O	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation	-	-	-	-	-	-	-	-	-	-	-	-	Rotamase_2,SurA_N_3
DYD1_k127_3641545_3	1444711.CCJF01000004_gene1966	6.317e-65	231.0	COG0030@1|root,COG0030@2|Bacteria,2JFY7@204428|Chlamydiae	204428|Chlamydiae	J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	ksgA	-	2.1.1.182	ko:K02528	-	-	R10716	RC00003,RC03257	ko00000,ko01000,ko03009	-	-	-	RrnaAD
DYD1_k127_3641545_1	1444711.CCJF01000004_gene1965	9.599e-93	317.0	COG1686@1|root,COG1686@2|Bacteria,2JFGM@204428|Chlamydiae	204428|Chlamydiae	M	D-alanyl-D-alanine carboxypeptidase	dacC	-	3.4.16.4	ko:K07258	ko00550,ko01100,map00550,map01100	-	-	-	ko00000,ko00001,ko01000,ko01002,ko01011	-	-	-	PBP5_C,Peptidase_S11
DYD1_k127_3641545_4	331113.SNE_A21510	2.696e-36	142.0	2E7DZ@1|root,331X1@2|Bacteria,2JGFH@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3641545_5	545694.TREPR_2226	3.433e-17	86.0	COG2172@1|root,COG2172@2|Bacteria,2J8RN@203691|Spirochaetes	203691|Spirochaetes	T	Histidine kinase-like ATPase domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c_2
DYD1_k127_3641545_2	331113.SNE_A21590	7.82e-66	235.0	COG1729@1|root,COG4105@1|root,COG1729@2|Bacteria,COG4105@2|Bacteria,2JG42@204428|Chlamydiae	204428|Chlamydiae	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_6
DYD1_k127_3641545_0	264201.pc0389	1.83e-114	379.0	COG0587@1|root,COG0587@2|Bacteria,2JFDD@204428|Chlamydiae	204428|Chlamydiae	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity)	dnaE	-	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP
DYD1_k127_3696311_2	1306947.ARQD01000001_gene898	3.475e-19	90.0	COG1215@1|root,COG1215@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_4,Glycos_transf_2
DYD1_k127_3696311_0	331113.SNE_A02330	1.356e-40	168.0	COG3307@1|root,COG3307@2|Bacteria	2|Bacteria	M	-O-antigen	-	-	-	ko:K02847	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01005,ko02000	9.B.67.4,9.B.67.5	-	-	Wzy_C
DYD1_k127_3696311_1	1444711.CCJF01000005_gene560	3.725e-20	104.0	COG3210@1|root,COG3210@2|Bacteria,2JGA4@204428|Chlamydiae	204428|Chlamydiae	U	Inverse autotransporter, beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	IAT_beta
DYD1_k127_371117_6	331113.SNE_A04420	2.339e-36	141.0	COG2271@1|root,COG2271@2|Bacteria	2|Bacteria	G	transmembrane transporter activity	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_371117_2	331113.SNE_A04410	8.471e-92	312.0	COG3608@1|root,COG3608@2|Bacteria	2|Bacteria	G	succinylglutamate desuccinylase aspartoacylase	-	-	-	ko:K06987	-	-	-	-	ko00000	-	-	-	AstE_AspA
DYD1_k127_371117_7	1229831.M832_07900	3.108e-08	58.0	COG0268@1|root,COG0268@2|Bacteria	2|Bacteria	J	rRNA binding	rpsT	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030234,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0042979,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0065003,GO:0065007,GO:0065009,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02968	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S20p
DYD1_k127_371117_8	264201.pc0130	4.623e-05	51.0	2EJ7W@1|root,33CZ2@2|Bacteria,2JGGT@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_371117_4	716544.wcw_1948	4.642e-40	159.0	COG4469@1|root,COG4469@2|Bacteria,2JG50@204428|Chlamydiae	204428|Chlamydiae	S	Competence protein CoiA-like family	-	-	-	ko:K06198	-	-	-	-	ko00000	-	-	-	CoiA
DYD1_k127_371117_0	331113.SNE_A23480	1.373e-294	910.0	COG0568@1|root,COG0568@2|Bacteria,2JFP5@204428|Chlamydiae	204428|Chlamydiae	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	sigA	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
DYD1_k127_371117_1	314282.PCNPT3_05960	3.351e-104	351.0	COG1448@1|root,COG1448@2|Bacteria,1MUT0@1224|Proteobacteria,1RN02@1236|Gammaproteobacteria,2QH4F@267894|Psychromonadaceae	1236|Gammaproteobacteria	E	Aminotransferase class I and II	aspC	GO:0003674,GO:0003824,GO:0004069,GO:0004838,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006558,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019438,GO:0019752,GO:0019842,GO:0030170,GO:0033585,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0070279,GO:0070547,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223	2.6.1.1,2.6.1.57	ko:K00813,ko:K00832	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	M00024,M00025,M00034,M00040	R00355,R00694,R00734,R00896,R01731,R02433,R02619,R05052,R07396,R10845	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	iPC815.YPO1410,iSFxv_1172.SFxv_1000	Aminotran_1_2
DYD1_k127_371117_3	331113.SNE_A00850	1.497e-68	245.0	COG1792@1|root,COG1792@2|Bacteria,2JG1B@204428|Chlamydiae	204428|Chlamydiae	M	rod shape-determining protein MreC	mreC	-	-	-	-	-	-	-	-	-	-	-	MreC
DYD1_k127_371117_5	765952.PUV_00330	2.371e-39	156.0	COG1887@1|root,COG1887@2|Bacteria,2JG2U@204428|Chlamydiae	204428|Chlamydiae	M	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyphos_transf
DYD1_k127_3787443_5	716544.wcw_0640	2.254e-27	118.0	2DZIQ@1|root,32VBQ@2|Bacteria,2JGAZ@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3787443_3	331113.SNE_A10970	3.9e-57	210.0	COG0561@1|root,COG0561@2|Bacteria,2JG2F@204428|Chlamydiae	204428|Chlamydiae	S	haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_3
DYD1_k127_3787443_8	331113.SNE_A10950	6.902e-12	70.0	COG3190@1|root,COG3190@2|Bacteria,2JGJY@204428|Chlamydiae	204428|Chlamydiae	N	Flagellar biosynthesis protein, FliO	-	-	-	ko:K02418	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliO
DYD1_k127_3787443_0	765952.PUV_12530	2.022e-151	489.0	COG0001@1|root,COG0001@2|Bacteria,2JFU8@204428|Chlamydiae	204428|Chlamydiae	H	Glutamate-1-semialdehyde	hemL	-	5.4.3.8	ko:K01845	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02272	RC00677	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
DYD1_k127_3787443_1	1444711.CCJF01000005_gene1304	2.578e-102	354.0	COG0729@1|root,COG0729@2|Bacteria,2JFF4@204428|Chlamydiae	204428|Chlamydiae	M	Surface antigen	-	-	-	ko:K07278	-	-	-	-	ko00000,ko02000	1.B.33.2.4	-	-	Bac_surface_Ag,POTRA
DYD1_k127_3787443_4	457398.HMPREF0326_05626	5.396e-33	149.0	COG2911@1|root,COG2911@2|Bacteria,1MUVD@1224|Proteobacteria,42PSZ@68525|delta/epsilon subdivisions,2WMBH@28221|Deltaproteobacteria,2M8PJ@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	TamB, inner membrane protein subunit of TAM complex	-	-	-	ko:K09800	-	-	-	-	ko00000,ko02000	-	-	-	TamB
DYD1_k127_3787443_7	331113.SNE_A10860	1.225e-19	94.0	COG0457@1|root,COG0457@2|Bacteria,2JGEB@204428|Chlamydiae	204428|Chlamydiae	S	Type III secretion	lcrH_2	-	-	-	-	-	-	-	-	-	-	-	TPR_3
DYD1_k127_3787443_2	331113.SNE_A10820	1.167e-96	323.0	COG0767@1|root,COG0767@2|Bacteria,2JFCS@204428|Chlamydiae	204428|Chlamydiae	Q	Permease MlaE	-	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE
DYD1_k127_3787443_6	331113.SNE_A10810	5.082e-27	113.0	COG1127@1|root,COG1127@2|Bacteria,2JFQY@204428|Chlamydiae	204428|Chlamydiae	Q	ABC transporter	mkl	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
DYD1_k127_3844072_1	760192.Halhy_3634	5.728e-214	694.0	COG0305@1|root,COG1372@1|root,COG0305@2|Bacteria,COG1372@2|Bacteria,4NF8P@976|Bacteroidetes,1IPIQ@117747|Sphingobacteriia	976|Bacteroidetes	L	Participates in initiation and elongation during chromosome replication	dnaB	-	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C
DYD1_k127_3844072_0	716544.wcw_1776	1.427e-253	795.0	COG0445@1|root,COG0445@2|Bacteria,2JFK6@204428|Chlamydiae	204428|Chlamydiae	D	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34	gidA	-	-	ko:K03495	-	-	R08701	RC00053,RC00209,RC00870	ko00000,ko03016,ko03036	-	-	-	GIDA,GIDA_assoc
DYD1_k127_3844072_2	867900.Celly_0422	2.103e-06	59.0	COG0642@1|root,COG0745@1|root,COG3292@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,4NDXU@976|Bacteroidetes,1HXUN@117743|Flavobacteriia,1F8T1@104264|Cellulophaga	976|Bacteroidetes	T	Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HTH_18,HisKA,Reg_prop,Response_reg,Y_Y_Y
DYD1_k127_3854876_1	1306947.ARQD01000001_gene898	1.415e-28	119.0	COG1215@1|root,COG1215@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_4,Glycos_transf_2
DYD1_k127_3854876_0	331113.SNE_A22770	6.8e-43	177.0	COG1215@1|root,COG1215@2|Bacteria,2JH6V@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_3854876_2	1306947.ARQD01000001_gene898	1.005e-25	113.0	COG1215@1|root,COG1215@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_4,Glycos_transf_2
DYD1_k127_3868204_0	331113.SNE_A03980	7.348e-99	332.0	COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,2JFG4@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	nadE	-	6.3.5.1	ko:K01950	ko00760,ko01100,map00760,map01100	M00115	R00257	RC00010,RC00100	ko00000,ko00001,ko00002,ko01000	-	-	-	CN_hydrolase,NAD_synthase
DYD1_k127_3868204_1	395961.Cyan7425_2889	1.161e-05	56.0	COG1232@1|root,COG1232@2|Bacteria	2|Bacteria	H	protoporphyrinogen oxidase activity	hemG	-	1.3.3.15,1.3.3.4	ko:K00231	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03222,R04178	RC00885	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase,Methyltransf_11,NAD_binding_8
DYD1_k127_3873312_0	331113.SNE_A05380	3.908e-220	699.0	COG2217@1|root,COG2217@2|Bacteria,2JFGU@204428|Chlamydiae	204428|Chlamydiae	P	E1-E2 ATPase	cadA	-	3.6.3.3,3.6.3.5	ko:K01534	-	-	-	-	ko00000,ko01000	3.A.3.6	-	-	E1-E2_ATPase,Hydrolase
DYD1_k127_3873312_1	331113.SNE_A05390	1.617e-75	260.0	COG1814@1|root,COG1814@2|Bacteria,2JFYP@204428|Chlamydiae	204428|Chlamydiae	S	VIT family	-	-	-	-	-	-	-	-	-	-	-	-	VIT1
DYD1_k127_3873312_3	765952.PUV_22400	8.16e-34	135.0	COG1362@1|root,COG1362@2|Bacteria,2JFF6@204428|Chlamydiae	204428|Chlamydiae	E	Aminopeptidase I zinc metalloprotease (M18)	apeB	-	3.4.11.21	ko:K01267	-	-	-	-	ko00000,ko01000,ko01002,ko04131	-	-	-	Peptidase_M18
DYD1_k127_3873312_2	264201.pc1490	1.305e-66	236.0	COG1362@1|root,COG1362@2|Bacteria,2JFF6@204428|Chlamydiae	204428|Chlamydiae	E	Aminopeptidase I zinc metalloprotease (M18)	apeB	-	3.4.11.21	ko:K01267	-	-	-	-	ko00000,ko01000,ko01002,ko04131	-	-	-	Peptidase_M18
DYD1_k127_3880527_1	929556.Solca_0595	2.4e-45	168.0	COG1131@1|root,COG1131@2|Bacteria,4NFWM@976|Bacteroidetes,1IQUT@117747|Sphingobacteriia	976|Bacteroidetes	V	ABC transporter	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
DYD1_k127_3880527_3	291112.PAU_02323	3.503e-16	88.0	2DBUF@1|root,2ZB5S@2|Bacteria,1NUFT@1224|Proteobacteria,1RYW0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	ko:K13409	ko02010,ko04626,map02010,map04626	M00339	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1.110	-	-	Asp_protease_2
DYD1_k127_3880527_2	1089550.ATTH01000001_gene2110	1.361e-22	107.0	COG3118@1|root,COG3118@2|Bacteria,4NQ5B@976|Bacteroidetes,1FJEP@1100069|Bacteroidetes Order II. Incertae sedis	976|Bacteroidetes	O	Thioredoxin	trxA	-	-	ko:K03671	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	Thioredoxin
DYD1_k127_3880527_0	1437425.CSEC_2056	3.128e-95	319.0	COG1171@1|root,COG1171@2|Bacteria,2JG95@204428|Chlamydiae	204428|Chlamydiae	E	Pyridoxal-phosphate dependent enzyme	-	-	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
DYD1_k127_391513_0	1444711.CCJF01000004_gene2315	0.0	1121.0	COG0525@1|root,COG0525@2|Bacteria,2JFDH@204428|Chlamydiae	204428|Chlamydiae	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner	valS	-	6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1
DYD1_k127_392783_2	1134474.O59_000792	2.356e-28	116.0	COG0745@1|root,COG0745@2|Bacteria,1MZAS@1224|Proteobacteria,1S9XI@1236|Gammaproteobacteria,1FHEP@10|Cellvibrio	1236|Gammaproteobacteria	T	cheY-homologous receiver domain	cheY-1	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD1_k127_392783_1	378806.STAUR_4471	2.291e-34	138.0	COG2230@1|root,COG2230@2|Bacteria,1QX5S@1224|Proteobacteria,42Y12@68525|delta/epsilon subdivisions,2WSZC@28221|Deltaproteobacteria,2YZY3@29|Myxococcales	28221|Deltaproteobacteria	M	cyclopropane-fatty-acyl-phospholipid synthase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
DYD1_k127_392783_4	891968.Anamo_1878	1.773e-09	70.0	COG0265@1|root,COG0457@1|root,COG0265@2|Bacteria,COG0457@2|Bacteria	2|Bacteria	S	peptidyl-tyrosine sulfation	-	-	3.4.21.107	ko:K04771,ko:K18546	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	Trypsin,Trypsin_2
DYD1_k127_392783_3	8496.XP_006266663.1	3.04e-25	120.0	KOG2458@1|root,KOG2458@2759|Eukaryota,38DMY@33154|Opisthokonta,3BC6Z@33208|Metazoa,3CV80@33213|Bilateria,4860D@7711|Chordata,48WF1@7742|Vertebrata	33208|Metazoa	S	glucosyltransferase activity	KDELC1	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046527,GO:0070013,GO:0071704,GO:1901135,GO:1903509	-	-	-	-	-	-	-	-	-	-	Filamin,Glyco_transf_90
DYD1_k127_392783_0	1285586.H131_21067	1.234e-53	200.0	COG0739@1|root,COG0739@2|Bacteria,1UX3M@1239|Firmicutes,4ICUN@91061|Bacilli,3IZYP@400634|Lysinibacillus	91061|Bacilli	M	Peptidase family M23	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
DYD1_k127_392783_5	985867.AEWF01000008_gene1031	0.0002033	46.0	COG0596@1|root,COG0596@2|Bacteria,1N49V@1224|Proteobacteria,2UTPS@28211|Alphaproteobacteria,47GEB@766|Rickettsiales	766|Rickettsiales	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3937406_0	765952.PUV_27520	2.743e-298	927.0	COG0441@1|root,COG0441@2|Bacteria,2JFEP@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)	thrS	-	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,TGS,ThiS,tRNA-synt_2b,tRNA_SAD
DYD1_k127_3937406_1	716544.wcw_0024	3.651e-118	384.0	COG1192@1|root,COG1192@2|Bacteria,2JFK5@204428|Chlamydiae	204428|Chlamydiae	D	Cellulose biosynthesis protein BcsQ	minD	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD1_k127_395055_0	716544.wcw_0234	1.358e-198	624.0	COG0013@1|root,COG0013@2|Bacteria,2JFU9@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	-	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
DYD1_k127_3967229_2	331113.SNE_A22680	1.627e-51	186.0	COG0210@1|root,COG0210@2|Bacteria,2JFDE@204428|Chlamydiae	204428|Chlamydiae	L	DNA helicase	pcrA	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
DYD1_k127_3967229_1	930171.Asphe3_18330	2.145e-74	259.0	COG2230@1|root,COG2230@2|Bacteria,2IAU4@201174|Actinobacteria,1WAFZ@1268|Micrococcaceae	201174|Actinobacteria	M	Mycolic acid cyclopropane synthetase	-	-	2.1.1.95	ko:K05928	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00112	R07236,R07504,R10491,R10492	RC00003,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	CMAS,Methyltransf_11
DYD1_k127_3967229_3	1500893.JQNB01000001_gene1169	1.271e-07	55.0	COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,1SGD7@1236|Gammaproteobacteria,1X8RN@135614|Xanthomonadales	135614|Xanthomonadales	S	Protein of unknown function (DUF1328)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1328
DYD1_k127_3967229_0	716544.wcw_0507	1.219e-87	297.0	COG2081@1|root,COG2081@2|Bacteria,2JFEJ@204428|Chlamydiae	204428|Chlamydiae	S	HI0933-like protein	-	-	-	ko:K07007	-	-	-	-	ko00000	-	-	-	HI0933_like
DYD1_k127_3976944_0	34349.G7E1F4	2.19e-29	129.0	KOG0610@1|root,KOG0610@2759|Eukaryota,38ERQ@33154|Opisthokonta,3NUP7@4751|Fungi,3UZ2T@5204|Basidiomycota,2YCY1@29000|Pucciniomycotina	4751|Fungi	T	Serine/Threonine protein kinases, catalytic domain	NRC2	GO:0000166,GO:0000749,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0005937,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010033,GO:0010876,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019236,GO:0019538,GO:0023052,GO:0030427,GO:0030554,GO:0031136,GO:0031137,GO:0031139,GO:0032368,GO:0032370,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0033036,GO:0034204,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042995,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043332,GO:0043412,GO:0043900,GO:0043902,GO:0044070,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044463,GO:0044464,GO:0045332,GO:0046777,GO:0046999,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051286,GO:0051716,GO:0061024,GO:0061091,GO:0061092,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0097035,GO:0097159,GO:0097367,GO:0120025,GO:0120038,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903793,GO:1905952,GO:1905954,GO:2000241,GO:2000243,GO:2001138,GO:2001140	-	ko:K08286	-	-	-	-	ko00000,ko01000	-	-	-	Pkinase
DYD1_k127_3976944_1	1122134.KB893652_gene2428	0.000215	44.0	2DR5Z@1|root,33ABB@2|Bacteria,1NIYJ@1224|Proteobacteria,1SGQ9@1236|Gammaproteobacteria,1XQB9@135619|Oceanospirillales	135619|Oceanospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_3977063_0	1122134.KB893652_gene2428	0.000215	44.0	2DR5Z@1|root,33ABB@2|Bacteria,1NIYJ@1224|Proteobacteria,1SGQ9@1236|Gammaproteobacteria,1XQB9@135619|Oceanospirillales	135619|Oceanospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4022364_0	331113.SNE_A01370	5.339e-175	554.0	COG1053@1|root,COG1053@2|Bacteria,2JFSU@204428|Chlamydiae	204428|Chlamydiae	C	succinate dehydrogenase	sdhA	-	1.3.5.1,1.3.5.4	ko:K00239	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
DYD1_k127_4022364_1	331113.SNE_A01380	5.117e-109	357.0	COG0479@1|root,COG0479@2|Bacteria,2JFQ7@204428|Chlamydiae	204428|Chlamydiae	C	succinate dehydrogenase	sdhB	-	1.3.5.1,1.3.5.4	ko:K00240	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_3,Fer4_10,Fer4_17,Fer4_8
DYD1_k127_4022364_2	331113.SNE_A01510	3.414e-75	259.0	COG0095@1|root,COG0095@2|Bacteria,2JG2Z@204428|Chlamydiae	204428|Chlamydiae	H	Lipoate-protein ligase	lplA_2	-	6.3.1.20	ko:K03800	ko00785,ko01100,map00785,map01100	-	R07770,R07771,R11143	RC00043,RC00070,RC00090,RC00992,RC02896	ko00000,ko00001,ko01000	-	-	-	-
DYD1_k127_4032896_1	331113.SNE_A08250	3.93e-32	126.0	COG0236@1|root,COG0236@2|Bacteria,2JG9N@204428|Chlamydiae	204428|Chlamydiae	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis	acpP	-	-	ko:K02078	-	-	-	-	ko00000,ko00001	-	-	-	PP-binding
DYD1_k127_4032896_0	1444712.BN1013_01710	5.476e-62	229.0	COG3850@1|root,COG3850@2|Bacteria	2|Bacteria	T	phosphorelay sensor kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	GAF,GAF_2,HAMP,HD,PAS_4,PAS_9,dCache_1
DYD1_k127_4035847_2	344747.PM8797T_22393	1.729e-17	94.0	COG0441@1|root,COG0441@2|Bacteria,2IXFR@203682|Planctomycetes	203682|Planctomycetes	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)	thrS	GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD
DYD1_k127_4035847_1	1444712.BN1013_01684	1.693e-50	182.0	COG0290@1|root,COG0290@2|Bacteria,2JG36@204428|Chlamydiae	204428|Chlamydiae	J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins	infC	-	-	ko:K02520	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	IF3_C,IF3_N
DYD1_k127_4044973_3	1443125.Z962_08160	1.642e-08	58.0	COG2155@1|root,COG2155@2|Bacteria,1VEQJ@1239|Firmicutes,24QKW@186801|Clostridia,36MUX@31979|Clostridiaceae	186801|Clostridia	S	Domain of unknown function (DUF378)	-	-	-	ko:K09779	-	-	-	-	ko00000	-	-	-	DUF378
DYD1_k127_4044973_1	331113.SNE_A06880	2.652e-117	385.0	COG0697@1|root,COG0697@2|Bacteria,2JFTJ@204428|Chlamydiae	204428|Chlamydiae	EG	Permeases of the drug metabolite transporter (DMT) superfamily	CP_1064	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD1_k127_4044973_2	1444711.CCJF01000005_gene1816	2.635e-56	203.0	COG1738@1|root,COG1738@2|Bacteria,2JG7K@204428|Chlamydiae	204428|Chlamydiae	S	Putative vitamin uptake transporter	CP_0548	-	-	ko:K09125	-	-	-	-	ko00000	-	-	-	Vut_1
DYD1_k127_4044973_0	331113.SNE_A06900	1.024e-192	606.0	COG0343@1|root,COG0343@2|Bacteria,2JFWK@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	tgt	-	2.4.2.29	ko:K00773	-	-	R03789,R10209	RC00063	ko00000,ko01000,ko03016	-	-	-	TGT
DYD1_k127_4046538_0	1444711.CCJF01000005_gene361	6.155e-31	123.0	COG0659@1|root,COG0659@2|Bacteria,2JFQW@204428|Chlamydiae	204428|Chlamydiae	P	Sulfate transporter family	ychM	-	-	ko:K03321	-	-	-	-	ko00000,ko02000	2.A.53.3	-	-	STAS,Sulfate_transp
DYD1_k127_4059354_3	331113.SNE_A01240	2.214e-22	103.0	COG2885@1|root,COG2885@2|Bacteria,2JG4H@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the ompA family	pal	-	-	ko:K03640	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	OmpA
DYD1_k127_4059354_0	1444711.CCJF01000005_gene213	3.608e-110	370.0	COG0823@1|root,COG0823@2|Bacteria,2JFJD@204428|Chlamydiae	204428|Chlamydiae	U	Involved in the TonB-independent uptake of proteins	tolB	-	-	ko:K03641	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	PD40
DYD1_k127_4059354_4	331113.SNE_A01260	1.907e-11	73.0	COG0810@1|root,COG0810@2|Bacteria,2JGFW@204428|Chlamydiae	204428|Chlamydiae	M	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	tolA	-	-	ko:K03646,ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1,2.C.1.2	-	-	-
DYD1_k127_4059354_2	331113.SNE_A01270	8.142e-28	118.0	COG0848@1|root,COG0848@2|Bacteria,2JGAW@204428|Chlamydiae	204428|Chlamydiae	U	Biopolymer transport protein ExbD/TolR	tolR	-	-	ko:K03559	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	ExbD
DYD1_k127_4059354_1	1444712.BN1013_00324	1.314e-36	141.0	COG0811@1|root,COG0811@2|Bacteria,2JFXS@204428|Chlamydiae	204428|Chlamydiae	U	MotA TolQ ExbB proton channel family protein	exbB	-	-	ko:K03562	ko01120,map01120	-	-	-	ko00000,ko02000	1.A.30.2.2	-	-	MotA_ExbB
DYD1_k127_4109880_0	331113.SNE_A06380	2.371e-73	261.0	COG4313@1|root,COG4313@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Phenol_MetA_deg
DYD1_k127_4112222_2	536232.CLM_1965	4.207e-08	64.0	COG0283@1|root,COG0283@2|Bacteria,1V3IA@1239|Firmicutes,24HEF@186801|Clostridia,36DDB@31979|Clostridiaceae	186801|Clostridia	F	Belongs to the cytidylate kinase family. Type 1 subfamily	cmk	-	2.7.4.25	ko:K00945	ko00240,ko01100,map00240,map01100	M00052	R00158,R00512,R01665	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Cytidylate_kin
DYD1_k127_4112222_0	331113.SNE_A21730	5.642e-53	197.0	COG0204@1|root,COG0204@2|Bacteria,2JG8Z@204428|Chlamydiae	204428|Chlamydiae	I	Acyltransferase	plsC	-	2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyltransferase
DYD1_k127_4112222_1	765952.PUV_25290	2.057e-32	128.0	COG3118@1|root,COG3118@2|Bacteria,2JG8T@204428|Chlamydiae	204428|Chlamydiae	O	Belongs to the thioredoxin family	trxA	-	-	ko:K03671	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	Thioredoxin
DYD1_k127_4112222_3	207559.Dde_3739	6.125e-05	48.0	2DNYP@1|root,32ZTI@2|Bacteria,1N747@1224|Proteobacteria,42XZ1@68525|delta/epsilon subdivisions,2WTGJ@28221|Deltaproteobacteria,2ME5V@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Protein of unknown function (DUF2905)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2905
DYD1_k127_4132786_2	1444711.CCJF01000005_gene1754	1.303e-15	77.0	COG0821@1|root,COG0821@2|Bacteria,2JFII@204428|Chlamydiae	204428|Chlamydiae	I	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate	ispG	-	1.17.7.1,1.17.7.3	ko:K03526	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R08689,R10859	RC01486	ko00000,ko00001,ko00002,ko01000	-	-	-	GcpE
DYD1_k127_4132786_0	765952.PUV_10060	0.0	1235.0	COG0495@1|root,COG0495@2|Bacteria,2JFVD@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class-I aminoacyl-tRNA synthetase family	leuS	-	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Anticodon_1,tRNA-synt_1,tRNA-synt_1_2,tRNA-synt_1g
DYD1_k127_4132786_1	331113.SNE_A12530	5.728e-83	289.0	COG1519@1|root,COG1519@2|Bacteria,2JFFN@204428|Chlamydiae	204428|Chlamydiae	M	Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of three 3-deoxy-D-manno-octulosonate (Kdo) residues from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide- 1,4'-bisphosphate precursor of lipid A. Thus generates the genus- specific LPS epitope of Chlamydia, composed of the trisaccharide alpha-Kdo-(2- 8)-alpha-Kdo-(2- 4)-alpha-Kdo	waaA	-	2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15	ko:K02527	ko00540,ko01100,map00540,map01100	M00060,M00080	R04658,R05074,R09763	RC00009,RC00077,RC00247	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT30	-	Glycos_transf_N
DYD1_k127_4147420_0	331113.SNE_A04190	1.893e-293	913.0	COG0021@1|root,COG0021@2|Bacteria,2JFFT@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	tkt	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C,Transketolase_N
DYD1_k127_4147420_2	765952.PUV_05950	1.539e-83	286.0	COG0407@1|root,COG0407@2|Bacteria,2JFYX@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III	hemE	-	4.1.1.37	ko:K01599	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03197,R04972	RC00872	ko00000,ko00001,ko00002,ko01000	-	-	-	URO-D
DYD1_k127_4147420_1	1229831.M832_06470	3.325e-116	388.0	COG0635@1|root,COG0635@2|Bacteria	2|Bacteria	H	coproporphyrinogen oxidase activity	hemN	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	1.3.98.3	ko:K02495	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R06895	RC00884	ko00000,ko00001,ko00002,ko01000	-	-	iECIAI39_1322.ECIAI39_3134,iZ_1308.Z5403	HemN_C,Radical_SAM
DYD1_k127_4147420_3	331113.SNE_A04230	9.463e-69	247.0	COG1232@1|root,COG1232@2|Bacteria,2JFUM@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX	hemG	-	1.3.3.15,1.3.3.4	ko:K00231	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03222,R04178	RC00885	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
DYD1_k127_4147540_3	716544.wcw_0501	2.598e-64	230.0	2CD1E@1|root,2ZB0F@2|Bacteria,2JFU1@204428|Chlamydiae	204428|Chlamydiae	S	Bacterial SH3 domain homologues	CP_0670	-	-	-	-	-	-	-	-	-	-	-	SH3_3
DYD1_k127_4147540_0	331113.SNE_A16480	7.389e-105	346.0	COG2833@1|root,COG2833@2|Bacteria,2JFXC@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF455)	-	-	-	-	-	-	-	-	-	-	-	-	DUF455
DYD1_k127_4147540_1	331113.SNE_A16520	1.164e-100	338.0	COG1322@1|root,COG1322@2|Bacteria,2JFJ6@204428|Chlamydiae	204428|Chlamydiae	S	DNA recombination protein RmuC homolog	rmuC	-	-	ko:K09760	-	-	-	-	ko00000	-	-	-	RmuC
DYD1_k127_4147540_2	331113.SNE_A16540	1.344e-90	306.0	COG1183@1|root,COG1183@2|Bacteria,2JFMU@204428|Chlamydiae	204428|Chlamydiae	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pssA	-	2.7.8.8	ko:K17103	ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110	M00093	R01800	RC00002,RC00017,RC02795	ko00000,ko00001,ko00002,ko01000	-	-	-	CDP-OH_P_transf
DYD1_k127_4152091_2	716544.wcw_1567	8.967e-61	214.0	COG0648@1|root,COG0648@2|Bacteria,2JFHU@204428|Chlamydiae	204428|Chlamydiae	L	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin	nfo	-	3.1.21.2	ko:K01151	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	AP_endonuc_2
DYD1_k127_4152091_0	313628.LNTAR_23369	1.502e-174	557.0	COG0017@1|root,COG0017@2|Bacteria	2|Bacteria	J	Asparaginyl-tRNA synthetase	asnS	GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.1.1.22	ko:K01893	ko00970,map00970	M00359,M00360	R03648	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	iSDY_1059.SDY_2327	tRNA-synt_2,tRNA_anti-codon
DYD1_k127_4152091_3	1444711.CCJF01000005_gene828	3.975e-60	221.0	COG0373@1|root,COG0373@2|Bacteria,2JFNX@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)	hemA	-	1.2.1.70	ko:K02492	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R04109	RC00055,RC00149	ko00000,ko00001,ko00002,ko01000	-	-	-	GlutR_N,Shikimate_DH
DYD1_k127_4152091_4	470.IX87_21610	0.0004557	49.0	COG2137@1|root,COG2137@2|Bacteria,1N6P6@1224|Proteobacteria,1SCMF@1236|Gammaproteobacteria,3NK97@468|Moraxellaceae	1236|Gammaproteobacteria	S	Regulatory protein recX	recX	-	-	ko:K03565	-	-	-	-	ko00000,ko03400	-	-	-	RecX
DYD1_k127_4152091_1	1444711.CCJF01000005_gene836	1.002e-101	338.0	COG0564@1|root,COG0564@2|Bacteria,2JFIY@204428|Chlamydiae	204428|Chlamydiae	J	Responsible for synthesis of pseudouridine from uracil	rluD	-	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD1_k127_4167676_0	331113.SNE_A14530	2.61e-27	117.0	2EAAF@1|root,334ES@2|Bacteria,2JGCU@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4171152_2	331113.SNE_A17250	8.837e-57	209.0	COG0707@1|root,COG0707@2|Bacteria,2JFEE@204428|Chlamydiae	204428|Chlamydiae	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	murG	-	2.4.1.227	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	-	R05032,R05662	RC00005,RC00049	ko00000,ko00001,ko01000,ko01011	-	GT28	-	Glyco_tran_28_C,Glyco_transf_28
DYD1_k127_4171152_0	1444712.BN1013_00909	6.008e-110	366.0	COG0772@1|root,COG0772@2|Bacteria,2JFCC@204428|Chlamydiae	204428|Chlamydiae	D	Belongs to the SEDS family	ftsW	-	-	ko:K03588	ko04112,map04112	-	-	-	ko00000,ko00001,ko02000,ko03036	2.A.103.1	-	-	FTSW_RODA_SPOVE
DYD1_k127_4171152_3	716544.wcw_1388	1.705e-31	132.0	COG1388@1|root,COG1388@2|Bacteria,2JG8Q@204428|Chlamydiae	204428|Chlamydiae	M	Lysin motif	nlpD	-	-	-	-	-	-	-	-	-	-	-	LysM
DYD1_k127_4171152_1	1444711.CCJF01000005_gene1053	8.52e-99	336.0	COG0771@1|root,COG0771@2|Bacteria,2JFMY@204428|Chlamydiae	204428|Chlamydiae	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	murD	-	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase_C,Mur_ligase_M
DYD1_k127_4177517_1	1121904.ARBP01000001_gene5485	2.382e-59	210.0	28HII@1|root,2Z7TZ@2|Bacteria,4NHR6@976|Bacteroidetes,47MJR@768503|Cytophagia	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4177517_2	1237149.C900_01784	1.575e-23	102.0	2EDEU@1|root,337B5@2|Bacteria,4NVH5@976|Bacteroidetes,47SHQ@768503|Cytophagia	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4177517_0	1237149.C900_01781	1.046e-88	296.0	COG1512@1|root,COG1512@2|Bacteria	2|Bacteria	S	TPM domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4181537_2	4096.XP_009763750.1	7.883e-25	118.0	COG2230@1|root,2QSMW@2759|Eukaryota,37NYG@33090|Viridiplantae,3GBIW@35493|Streptophyta,44I9S@71274|asterids	35493|Streptophyta	M	Flavin containing amine oxidoreductase	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	Amino_oxidase,CMAS,NAD_binding_8
DYD1_k127_4181537_0	794903.OPIT5_13610	5.358e-69	254.0	COG2831@1|root,COG2831@2|Bacteria	2|Bacteria	U	hemolysin activation secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	POTRA_2,ShlB
DYD1_k127_4181537_1	570967.JMLV01000006_gene340	2.346e-38	156.0	COG0697@1|root,COG0697@2|Bacteria,1MZXM@1224|Proteobacteria,2TSZM@28211|Alphaproteobacteria,2JS66@204441|Rhodospirillales	204441|Rhodospirillales	EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD1_k127_4181537_3	331113.SNE_A02450	6.875e-17	82.0	COG0300@1|root,COG1211@1|root,COG0300@2|Bacteria,COG1211@2|Bacteria,2JG5T@204428|Chlamydiae	2|Bacteria	I	Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)	ispD	GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567	1.1.1.405,2.7.7.40,2.7.7.60,4.6.1.12	ko:K00991,ko:K12506,ko:K21681	ko00040,ko00900,ko01100,ko01110,ko01130,map00040,map00900,map01100,map01110,map01130	M00096	R01525,R02921,R05633,R05637	RC00002,RC00089,RC01440	ko00000,ko00001,ko00002,ko01000	-	-	-	IspD,adh_short
DYD1_k127_4246599_8	3218.PP1S22_124V6.1	2.026e-14	78.0	COG0297@1|root,2QQTU@2759|Eukaryota,37R9T@33090|Viridiplantae,3GG40@35493|Streptophyta	35493|Streptophyta	O	Belongs to the glycosyltransferase 1 family. Bacterial plant glycogen synthase subfamily	-	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0006073,GO:0008150,GO:0008152,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009507,GO:0009536,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019252,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0071704,GO:1901576	2.4.1.21	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	M00565	R02421	RC00005	ko00000,ko00001,ko00002,ko01000,ko01003	-	GT5	-	Glyco_transf_5,Glycos_transf_1
DYD1_k127_4246599_4	716544.wcw_0815	4.324e-48	179.0	COG1825@1|root,COG1825@2|Bacteria,2JG0I@204428|Chlamydiae	204428|Chlamydiae	J	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	ctc	-	-	ko:K02897	ko03010,map03010	M00178	-	-	ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L25p,Ribosomal_TL5_C
DYD1_k127_4246599_3	331113.SNE_A18090	4.334e-54	196.0	COG0193@1|root,COG0193@2|Bacteria,2JG54@204428|Chlamydiae	204428|Chlamydiae	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis	pth	-	3.1.1.29	ko:K01056	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	Pept_tRNA_hydro
DYD1_k127_4246599_5	765952.PUV_15890	2.181e-45	167.0	COG0360@1|root,COG0360@2|Bacteria,2JG6K@204428|Chlamydiae	204428|Chlamydiae	J	Binds together with S18 to 16S ribosomal RNA	rpsF	-	-	ko:K02990	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S6
DYD1_k127_4246599_7	1437425.CSEC_1021	2.49e-22	100.0	COG0238@1|root,COG0238@2|Bacteria,2JGBA@204428|Chlamydiae	204428|Chlamydiae	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	rpsR	-	-	ko:K02963	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S18
DYD1_k127_4246599_6	264201.pc1590	6.766e-42	160.0	COG0359@1|root,COG0359@2|Bacteria,2JG41@204428|Chlamydiae	204428|Chlamydiae	J	binds to the 23S rRNA	rplI	-	-	ko:K02939	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L9_C,Ribosomal_L9_N
DYD1_k127_4246599_2	331113.SNE_A18050	4.206e-67	238.0	COG1947@1|root,COG1947@2|Bacteria,2JFYM@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol	ispE	-	2.7.1.148	ko:K00919	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05634	RC00002,RC01439	ko00000,ko00001,ko00002,ko01000	-	-	-	GHMP_kinases_N
DYD1_k127_4246599_0	765952.PUV_13600	2.075e-126	412.0	COG0451@1|root,COG0451@2|Bacteria,2JFMJ@204428|Chlamydiae	204428|Chlamydiae	GM	Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose	hldD	-	5.1.3.20	ko:K03274	ko00540,ko01100,map00540,map01100	M00064	R05176	RC01291	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase
DYD1_k127_4246599_1	706587.Desti_1537	3.334e-67	243.0	COG0615@1|root,COG2870@1|root,COG0615@2|Bacteria,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,42MBC@68525|delta/epsilon subdivisions,2WIKU@28221|Deltaproteobacteria,2MQGF@213462|Syntrophobacterales	28221|Deltaproteobacteria	H	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose	hldE	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509	2.7.1.167,2.7.7.70	ko:K03272	ko00540,ko01100,map00540,map01100	M00064	R05644,R05646	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	iAF987.Gmet_0922	CTP_transf_like,PfkB
DYD1_k127_4269264_3	331113.SNE_A10100	2.596e-22	105.0	COG3083@1|root,COG3083@2|Bacteria	2|Bacteria	S	sulfuric ester hydrolase activity	yejM	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K07014	-	-	-	-	ko00000	-	-	-	DUF3413,Sulfatase
DYD1_k127_4269264_1	264201.pc0329	7.198e-61	217.0	COG0637@1|root,COG0637@2|Bacteria,2JG4C@204428|Chlamydiae	204428|Chlamydiae	S	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
DYD1_k127_4269264_0	716544.wcw_0374	1.408e-80	276.0	COG0101@1|root,COG0101@2|Bacteria,2JFJC@204428|Chlamydiae	204428|Chlamydiae	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	truA1	-	5.4.99.12	ko:K06173	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	PseudoU_synth_1
DYD1_k127_4269264_2	3067.XP_002958218.1	1.31e-50	187.0	COG1211@1|root,2QUUE@2759|Eukaryota,37JBI@33090|Viridiplantae,34HD7@3041|Chlorophyta	3041|Chlorophyta	H	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	CMS	-	2.7.7.60	ko:K00991	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05633	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	IspD
DYD1_k127_4283804_4	96561.Dole_2486	1.542e-12	72.0	COG0176@1|root,COG0176@2|Bacteria,1MWQ8@1224|Proteobacteria,42M39@68525|delta/epsilon subdivisions,2WJEZ@28221|Deltaproteobacteria,2MI50@213118|Desulfobacterales	28221|Deltaproteobacteria	F	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	-	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD1_k127_4283804_0	1444711.CCJF01000005_gene259	2.186e-70	248.0	COG0564@1|root,COG0564@2|Bacteria,2JG28@204428|Chlamydiae	204428|Chlamydiae	J	RNA pseudouridylate synthase	-	-	5.4.99.23,5.4.99.28,5.4.99.29	ko:K06177,ko:K06180	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	PseudoU_synth_2
DYD1_k127_4283804_1	716544.wcw_1461	9.163e-39	148.0	COG1186@1|root,COG1186@2|Bacteria,2JH63@204428|Chlamydiae	204428|Chlamydiae	J	RF-1 domain	prfA3	-	-	-	-	-	-	-	-	-	-	-	RF-1
DYD1_k127_4283804_2	331113.SNE_A10380	2.481e-25	111.0	COG1661@1|root,COG1661@2|Bacteria	2|Bacteria	O	DNA-binding protein with PD1-like DNA-binding motif	-	-	-	ko:K06934	-	-	-	-	ko00000	-	-	-	DUF296
DYD1_k127_4283804_3	497964.CfE428DRAFT_6673	4.781e-20	94.0	COG0724@1|root,COG0724@2|Bacteria,46VMU@74201|Verrucomicrobia	74201|Verrucomicrobia	S	PFAM RNP-1 like RNA-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	RRM_1
DYD1_k127_4283804_5	716544.wcw_0197	2.913e-10	61.0	COG2050@1|root,COG2050@2|Bacteria,2JG6F@204428|Chlamydiae	204428|Chlamydiae	Q	protein, possibly involved in aromatic compounds catabolism	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD1_k127_4301066_2	765952.PUV_04690	0.0008989	42.0	COG0571@1|root,COG0571@2|Bacteria,2JFR9@204428|Chlamydiae	204428|Chlamydiae	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	rnc	-	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	-	-	-	Ribonucleas_3_3,dsrm
DYD1_k127_4301066_0	264201.pc0273	1.29e-192	610.0	COG1066@1|root,COG1066@2|Bacteria,2JFUU@204428|Chlamydiae	204428|Chlamydiae	L	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	radA	-	-	ko:K04485	-	-	-	-	ko00000,ko03400	-	-	-	AAA_25,ATPase,ChlI,Lon_C
DYD1_k127_4301066_1	716544.wcw_0250	3.311e-17	83.0	COG0181@1|root,COG1587@1|root,COG0181@2|Bacteria,COG1587@2|Bacteria,2JFY0@204428|Chlamydiae	204428|Chlamydiae	H	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps	hemC	-	2.5.1.61	ko:K01749	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00084	RC02317	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4,Porphobil_deam
DYD1_k127_4304905_0	1444711.CCJF01000004_gene2039	3.219e-142	456.0	COG1234@1|root,COG1234@2|Bacteria,2JFIS@204428|Chlamydiae	204428|Chlamydiae	J	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA	rnz	-	3.1.26.11	ko:K00784	ko03013,map03013	-	-	-	ko00000,ko00001,ko01000,ko03016	-	-	-	Lactamase_B,Lactamase_B_2
DYD1_k127_4304905_1	1437425.CSEC_0680	5.955e-76	269.0	COG0705@1|root,COG0705@2|Bacteria,2JFTB@204428|Chlamydiae	204428|Chlamydiae	S	Rhomboid family	glpG	-	-	ko:K02441	-	-	-	-	ko00000	-	-	-	Rhomboid,Rhomboid_N
DYD1_k127_4304905_2	1444711.CCJF01000004_gene2041	7.462e-29	117.0	COG0615@1|root,COG0615@2|Bacteria,2JG3S@204428|Chlamydiae	204428|Chlamydiae	IM	Cytidylyltransferase-like	hldC	-	-	-	-	-	-	-	-	-	-	-	CTP_transf_like
DYD1_k127_4331851_0	331113.SNE_A05030	3.717e-195	614.0	COG0362@1|root,COG0362@2|Bacteria,2JFPS@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH	gnd	-	1.1.1.343,1.1.1.44	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	M00004,M00006	R01528,R10221	RC00001,RC00539	ko00000,ko00001,ko00002,ko01000	-	-	-	6PGD,NAD_binding_2
DYD1_k127_4331851_1	331113.SNE_A05000	1.359e-54	199.0	COG0860@1|root,COG0860@2|Bacteria,2JG43@204428|Chlamydiae	204428|Chlamydiae	M	N-acetylmuramoyl-L-alanine amidase	amiA	-	3.5.1.28	ko:K01448	ko01503,map01503	M00727	R04112	RC00064,RC00141	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	-	-	-	Amidase_3
DYD1_k127_4331851_2	1122947.FR7_3216	3.674e-12	69.0	COG0769@1|root,COG0769@2|Bacteria,1TPQE@1239|Firmicutes,4H2VD@909932|Negativicutes	909932|Negativicutes	M	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan	murE	-	6.3.2.10,6.3.2.13	ko:K01928,ko:K15792	ko00300,ko00550,map00300,map00550	-	R02788,R04617	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
DYD1_k127_4338007_1	716544.wcw_0423	2.361e-48	178.0	COG0552@1|root,COG0552@2|Bacteria,2JFD8@204428|Chlamydiae	204428|Chlamydiae	D	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)	ftsY	-	-	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7	-	-	SRP54,SRP54_N
DYD1_k127_4338007_0	331113.SNE_A15010	3.553e-138	445.0	COG0176@1|root,COG0176@2|Bacteria,2JFM5@204428|Chlamydiae	204428|Chlamydiae	F	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD1_k127_4338007_3	1444711.CCJF01000004_gene2270	0.0003759	49.0	2EG4Z@1|root,339WW@2|Bacteria,2JGJF@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4338007_2	765952.PUV_23640	1.464e-24	111.0	2DMFE@1|root,32R57@2|Bacteria,2JG5R@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4342858_2	1437425.CSEC_2019	1.463e-252	788.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,2JGR0@204428|Chlamydiae	204428|Chlamydiae	H	Pyruvate phosphate dikinase, PEP/pyruvate binding domain	ppsA	-	2.7.9.1,2.7.9.2	ko:K01006,ko:K01007	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173,M00374	R00199,R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PEP-utilizers_C,PPDK_N
DYD1_k127_4342858_3	1396141.BATP01000059_gene2437	1.388e-106	355.0	COG1052@1|root,COG1052@2|Bacteria,46SGM@74201|Verrucomicrobia,2ITY0@203494|Verrucomicrobiae	203494|Verrucomicrobiae	CH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	2-Hacid_dh,2-Hacid_dh_C
DYD1_k127_4342858_1	237368.SCABRO_03039	1.094e-279	881.0	COG0188@1|root,COG0188@2|Bacteria,2IY0U@203682|Planctomycetes	203682|Planctomycetes	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrA	-	5.99.1.3	ko:K02469	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
DYD1_k127_4342858_0	1444711.CCJF01000005_gene1235	0.0	1187.0	COG0187@1|root,COG0187@2|Bacteria,2JFF2@204428|Chlamydiae	204428|Chlamydiae	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrB	-	5.99.1.3	ko:K02470	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
DYD1_k127_4342858_4	1444711.CCJF01000005_gene1234	1.232e-20	95.0	COG5512@1|root,COG5512@2|Bacteria,2JGEC@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF721)	-	-	-	-	-	-	-	-	-	-	-	-	DUF721
DYD1_k127_4370384_1	1444712.BN1013_00178	7.95e-140	458.0	COG0013@1|root,COG0013@2|Bacteria,2JFU9@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	-	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
DYD1_k127_4370384_0	331113.SNE_A04130	1.028e-170	553.0	COG1197@1|root,COG1197@2|Bacteria,2JFGI@204428|Chlamydiae	204428|Chlamydiae	L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site	mfd	-	-	ko:K03723	ko03420,map03420	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF
DYD1_k127_4384498_0	926550.CLDAP_10480	2.795e-130	420.0	COG0399@1|root,COG0399@2|Bacteria	2|Bacteria	E	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	rfbH	-	1.17.1.1,4.2.1.164	ko:K12452,ko:K13328	ko00520,ko00523,ko01130,map00520,map00523,map01130	M00802	R03391,R03392,R08930	RC00230,RC00704	ko00000,ko00001,ko00002,ko01000	-	-	-	DegT_DnrJ_EryC1
DYD1_k127_4384498_1	1121382.JQKG01000010_gene4636	6.159e-119	391.0	COG0451@1|root,COG0451@2|Bacteria	2|Bacteria	GM	ADP-glyceromanno-heptose 6-epimerase activity	yfnG	-	4.2.1.45	ko:K01709	ko00520,map00520	-	R02426	RC00402	ko00000,ko00001,ko01000	-	-	-	GDP_Man_Dehyd
DYD1_k127_4401788_0	4899.EPX71989	2.217e-09	63.0	KOG0590@1|root,KOG0590@2759|Eukaryota,39H3B@33154|Opisthokonta,3NVGV@4751|Fungi,3QJKZ@4890|Ascomycota,3MBSC@451866|Taphrinomycotina	4751|Fungi	D	HAL protein kinase	NPR1	GO:0000122,GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006808,GO:0006873,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009373,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019216,GO:0019219,GO:0019222,GO:0019236,GO:0019538,GO:0019725,GO:0022898,GO:0023052,GO:0030100,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032409,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0034762,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043901,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045806,GO:0045892,GO:0045934,GO:0045996,GO:0046019,GO:0046020,GO:0046890,GO:0046999,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055082,GO:0060255,GO:0060627,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:1905038,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141	-	-	-	-	-	-	-	-	-	-	Pkinase
DYD1_k127_4404749_0	264201.pc0749	2.38e-198	628.0	COG4789@1|root,COG4789@2|Bacteria,2JFH4@204428|Chlamydiae	204428|Chlamydiae	U	Type III secretion inner membrane protein SctV	sctV	-	-	ko:K03230	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	FHIPEP
DYD1_k127_4404749_1	1444711.CCJF01000005_gene1746	1.53e-102	345.0	COG1377@1|root,COG1377@2|Bacteria,2JFD1@204428|Chlamydiae	204428|Chlamydiae	U	Type III secretion	sctU	-	-	ko:K03229	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	Bac_export_2
DYD1_k127_4404749_4	676032.FN3523_1133	9.853e-07	51.0	COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,1RM8U@1236|Gammaproteobacteria,45ZWW@72273|Thiotrichales	72273|Thiotrichales	E	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	alr	-	5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	-	R00401	RC00285	ko00000,ko00001,ko01000,ko01011	-	-	-	Ala_racemase_C,Ala_racemase_N
DYD1_k127_4404749_3	1289135.A966_02073	3.438e-15	78.0	COG0787@1|root,COG0787@2|Bacteria,2J5JY@203691|Spirochaetes	203691|Spirochaetes	M	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	alr	-	5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	-	R00401	RC00285	ko00000,ko00001,ko01000,ko01011	-	-	-	Ala_racemase_C,Ala_racemase_N
DYD1_k127_4421816_0	316058.RPB_3802	3.183e-111	373.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TR1I@28211|Alphaproteobacteria,3JR67@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Acetolactate synthase	-	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
DYD1_k127_4421816_1	1380394.JADL01000001_gene2770	1.147e-81	276.0	COG0279@1|root,COG0279@2|Bacteria,1PW0E@1224|Proteobacteria,2U850@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	SIS domain	-	-	5.3.1.28	ko:K03271	ko00540,ko01100,map00540,map01100	M00064	R05645,R09768,R09769	RC00434	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	SIS_2
DYD1_k127_4421816_2	497964.CfE428DRAFT_2552	7.54e-52	189.0	COG0241@1|root,COG0241@2|Bacteria,46T3Q@74201|Verrucomicrobia	74201|Verrucomicrobia	E	hydrolase, HAD-superfamily, subfamily IIIA	-	-	3.1.3.82,3.1.3.83	ko:K03273	ko00540,ko01100,map00540,map01100	M00064	R05647,R09771	RC00017	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	HAD_2,Hydrolase_like
DYD1_k127_4421816_3	1321778.HMPREF1982_00182	9.793e-06	48.0	COG0176@1|root,COG0176@2|Bacteria,1TP4Q@1239|Firmicutes	1239|Firmicutes	H	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	-	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD1_k127_4426972_0	1353529.M899_1347	7.066e-59	226.0	COG0642@1|root,COG4251@1|root,COG5002@1|root,COG0642@2|Bacteria,COG2205@2|Bacteria,COG4251@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,42M0Y@68525|delta/epsilon subdivisions,2MTI7@213481|Bdellovibrionales,2WIR4@28221|Deltaproteobacteria	213481|Bdellovibrionales	T	Histidine kinase A domain protein	-	-	-	-	-	-	-	-	-	-	-	-	CHASE,HATPase_c,HisKA,PAS_3,Response_reg
DYD1_k127_4426972_1	716544.wcw_1137	1.116e-22	102.0	COG0745@1|root,COG0745@2|Bacteria,2JH9M@204428|Chlamydiae	204428|Chlamydiae	T	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
DYD1_k127_4426972_2	765913.ThidrDRAFT_1067	6.302e-12	78.0	COG0642@1|root,COG0784@1|root,COG3614@1|root,COG5002@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,COG3614@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1WVYT@135613|Chromatiales	135613|Chromatiales	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	-	-	-	-	-	-	-	-	-	CHASE,HATPase_c,HisKA,Hpt,PAS,PAS_9,Response_reg
DYD1_k127_4426972_3	1297570.MESS4_830024	1.077e-08	68.0	COG0457@1|root,COG0457@2|Bacteria,1MVMG@1224|Proteobacteria,2TSGE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	U	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	Sulfotransfer_3,TPR_1,TPR_10,TPR_11,TPR_12,TPR_16,TPR_2,TPR_6,TPR_8
DYD1_k127_4464758_6	1410650.JHWL01000023_gene2318	7.211e-06	52.0	COG0569@1|root,COG0569@2|Bacteria,1TPNS@1239|Firmicutes,24830@186801|Clostridia,4BW25@830|Butyrivibrio	186801|Clostridia	P	TrkA-N domain	trkA	-	-	ko:K03499	-	-	-	-	ko00000,ko02000	2.A.38.1,2.A.38.4	-	-	TrkA_C,TrkA_N
DYD1_k127_4464758_3	1444711.CCJF01000005_gene318	8.774e-147	482.0	COG0168@1|root,COG0168@2|Bacteria,2JFTF@204428|Chlamydiae	204428|Chlamydiae	P	Trk-type K transport systems, membrane components	-	-	-	ko:K03498	-	-	-	-	ko00000,ko02000	2.A.38.1,2.A.38.4	-	-	TrkH
DYD1_k127_4464758_4	264201.pc0027	2.284e-48	182.0	COG2264@1|root,COG2264@2|Bacteria,2JGAK@204428|Chlamydiae	204428|Chlamydiae	J	Ribosomal protein L11 methyltransferase (PrmA)	prmA	-	-	ko:K02687	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PrmA
DYD1_k127_4464758_1	716544.wcw_1849	3.464e-246	771.0	COG0459@1|root,COG0459@2|Bacteria,2JFPP@204428|Chlamydiae	204428|Chlamydiae	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL2	-	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD1_k127_4464758_5	264201.pc0031	4.244e-29	119.0	COG0234@1|root,COG0234@2|Bacteria,2JG9S@204428|Chlamydiae	204428|Chlamydiae	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	-	-	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
DYD1_k127_4464758_2	331113.SNE_A22610	7.245e-168	536.0	COG3876@1|root,COG3876@2|Bacteria,2JFQB@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF1343)	ybbC	-	-	-	-	-	-	-	-	-	-	-	DUF1343
DYD1_k127_4464758_0	331113.SNE_A22620	7.006e-288	900.0	COG0506@1|root,COG1012@1|root,COG0506@2|Bacteria,COG1012@2|Bacteria,2JFQE@204428|Chlamydiae	204428|Chlamydiae	CE	Belongs to the aldehyde dehydrogenase family	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh
DYD1_k127_4490555_0	331113.SNE_A01990	3.403e-121	398.0	COG1249@1|root,COG1249@2|Bacteria,2JFIX@204428|Chlamydiae	204428|Chlamydiae	C	The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity)	lpdA	-	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
DYD1_k127_4490555_2	716544.wcw_0104	1.119e-12	74.0	2E888@1|root,332MB@2|Bacteria,2JGF8@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4490555_1	765869.BDW_09435	8.676e-15	75.0	COG1055@1|root,COG1055@2|Bacteria,1N68M@1224|Proteobacteria,42PD9@68525|delta/epsilon subdivisions,2MTG9@213481|Bdellovibrionales,2WKRV@28221|Deltaproteobacteria	213481|Bdellovibrionales	P	Putative Na+/H+ antiporter	-	-	-	-	-	-	-	-	-	-	-	-	Na_H_antiport_3
DYD1_k127_4513871_0	1444711.CCJF01000005_gene766	6.095e-117	394.0	COG0659@1|root,COG0659@2|Bacteria,2JFMP@204428|Chlamydiae	204428|Chlamydiae	P	Sulfate permease family	-	-	-	-	-	-	-	-	-	-	-	-	STAS,Sulfate_transp
DYD1_k127_4516704_3	652103.Rpdx1_1421	2.204e-55	200.0	2F4HQ@1|root,33X7J@2|Bacteria	2|Bacteria	S	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
DYD1_k127_4516704_0	316055.RPE_1516	7.6e-159	507.0	COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,3JRQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily	rfbB	-	4.2.1.46,4.2.1.76,5.1.3.2	ko:K01710,ko:K01784,ko:K12450	ko00052,ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00052,map00520,map00521,map00523,map00525,map01055,map01100,map01130	M00361,M00362,M00632,M00793	R00291,R00293,R02984,R06513	RC00289,RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD1_k127_4516704_2	1380394.JADL01000001_gene2741	4.217e-66	236.0	COG0451@1|root,COG0451@2|Bacteria,1RC9U@1224|Proteobacteria,2UGSH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	GM	RmlD substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
DYD1_k127_4516704_1	1380394.JADL01000001_gene2742	2.328e-80	275.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,2JPVB@204441|Rhodospirillales	204441|Rhodospirillales	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	-	-	-	-	-	-	-	-	-	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD1_k127_4535086_6	716544.wcw_1580	1.727e-06	54.0	COG2604@1|root,COG2604@2|Bacteria,2JFK8@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function DUF115	-	-	-	-	-	-	-	-	-	-	-	-	MAF_flag10
DYD1_k127_4535086_5	765952.PUV_25720	2.72e-11	68.0	COG2849@1|root,COG2849@2|Bacteria,2JGQS@204428|Chlamydiae	204428|Chlamydiae	S	MORN repeat variant	-	-	-	-	-	-	-	-	-	-	-	-	MORN_2
DYD1_k127_4535086_1	331113.SNE_A19000	3.109e-33	143.0	COG2604@1|root,COG2604@2|Bacteria,2JFK8@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function DUF115	-	-	-	-	-	-	-	-	-	-	-	-	MAF_flag10
DYD1_k127_4535086_4	1121129.KB903367_gene2747	4.072e-13	74.0	COG4096@1|root,COG4096@2|Bacteria,4NNKI@976|Bacteroidetes,2G3EH@200643|Bacteroidia,22Y4B@171551|Porphyromonadaceae	976|Bacteroidetes	V	Type I restriction enzyme R protein N terminus (HSDR_N)	-	-	-	-	-	-	-	-	-	-	-	-	HSDR_N_2
DYD1_k127_4535086_0	716544.wcw_1585	2.286e-49	183.0	COG1544@1|root,COG1544@2|Bacteria,2JFY2@204428|Chlamydiae	204428|Chlamydiae	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase	hpf	-	-	ko:K05808	-	-	-	-	ko00000,ko03009	-	-	-	Ribosom_S30AE_C,Ribosomal_S30AE
DYD1_k127_4535086_2	331113.SNE_A19090	9.755e-19	93.0	COG1381@1|root,COG1381@2|Bacteria,2JG9R@204428|Chlamydiae	204428|Chlamydiae	L	Involved in DNA repair and RecF pathway recombination	recO	-	-	ko:K03584	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecO_C,RecO_N
DYD1_k127_4535086_3	1157490.EL26_03800	2.238e-18	87.0	COG1164@1|root,COG1164@2|Bacteria,1U8XY@1239|Firmicutes,4HEV8@91061|Bacilli	91061|Bacilli	E	Peptidase M3A and M3B thimet oligopeptidase F	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M2,Peptidase_M3
DYD1_k127_4546182_1	765952.PUV_12630	3.814e-87	300.0	COG0859@1|root,COG0859@2|Bacteria,2JFJF@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyltransferase family 9 (heptosyltransferase)	waaC	-	-	ko:K02841	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
DYD1_k127_4546182_0	331113.SNE_A08550	1.752e-118	395.0	COG3104@1|root,COG3104@2|Bacteria	2|Bacteria	E	oligopeptide transport	-	-	-	ko:K03305	-	-	-	-	ko00000	2.A.17	-	-	PTR2
DYD1_k127_4546182_2	1444712.BN1013_01688	7.171e-32	129.0	COG0564@1|root,COG0564@2|Bacteria,2JG7S@204428|Chlamydiae	204428|Chlamydiae	J	Pseudouridine synthase	rluC	-	5.4.99.24	ko:K06179	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2
DYD1_k127_4568876_3	264201.pc1082	4.332e-37	145.0	COG0593@1|root,COG0593@2|Bacteria,2JFG5@204428|Chlamydiae	204428|Chlamydiae	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	dnaA1	-	-	ko:K02313	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001,ko03032,ko03036	-	-	-	Bac_DnaA,Bac_DnaA_C,DnaA_N
DYD1_k127_4568876_4	529818.AMSG_07184T0	5.212e-21	107.0	KOG0598@1|root,KOG0598@2759|Eukaryota	2759|Eukaryota	H	protein serine/threonine kinase activity	-	-	2.7.11.1	ko:K08282,ko:K13303	ko04068,ko04151,map04068,map04151	-	-	-	ko00000,ko00001,ko01000,ko01001	-	-	-	Pkinase
DYD1_k127_4568876_1	331113.SNE_A14370	9.998e-74	251.0	28KCR@1|root,2Z9ZJ@2|Bacteria,2JFPG@204428|Chlamydiae	204428|Chlamydiae	S	Tir chaperone protein (CesT) family	CP_0368	-	-	-	-	-	-	-	-	-	-	-	CesT
DYD1_k127_4568876_0	264201.pc1106	6.976e-207	661.0	COG1523@1|root,COG1523@2|Bacteria,2JFKM@204428|Chlamydiae	204428|Chlamydiae	G	Belongs to the glycosyl hydrolase 13 family	glgX	-	3.2.1.68	ko:K01214	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R09995,R11261	-	ko00000,ko00001,ko00002,ko01000	-	CBM48,GH13	-	Alpha-amylase,CBM_48
DYD1_k127_4568876_2	331113.SNE_A14400	6.488e-39	154.0	2919I@1|root,2ZNWM@2|Bacteria,2JHFF@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4595876_3	243164.DET0206	3.337e-28	117.0	COG2605@1|root,COG2605@2|Bacteria,2G5TF@200795|Chloroflexi	200795|Chloroflexi	S	PFAM GHMP kinase	-	-	2.7.1.168	ko:K07031	ko00540,map00540	-	R09770	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	GHMP_kinases_C,GHMP_kinases_N
DYD1_k127_4595876_2	1485543.JMME01000001_gene1350	5.317e-44	168.0	COG1208@1|root,COG1208@2|Bacteria,1V69F@1239|Firmicutes,4H916@909932|Negativicutes	909932|Negativicutes	JM	Nucleotidyl transferase	-	-	-	-	-	-	-	-	-	-	-	-	NTP_transferase
DYD1_k127_4595876_0	192222.Cj1427c	7.459e-130	421.0	COG0451@1|root,COG0451@2|Bacteria,1PB4Y@1224|Proteobacteria,42QBV@68525|delta/epsilon subdivisions,2YNIP@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	M	NAD dependent epimerase dehydratase family	-	-	5.1.3.25	ko:K17947	ko00523,ko01130,map00523,map01130	-	R10279	RC00289	ko00000,ko00001,ko01000	-	-	-	Epimerase
DYD1_k127_4595876_1	258594.RPA3918	1.095e-59	216.0	COG0300@1|root,COG0300@2|Bacteria,1NYHT@1224|Proteobacteria,2UTXW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
DYD1_k127_4600936_2	331113.SNE_A14410	3.387e-26	113.0	COG1266@1|root,COG1266@2|Bacteria,2JGC1@204428|Chlamydiae	204428|Chlamydiae	S	CAAX protease self-immunity	-	-	-	ko:K07052	-	-	-	-	ko00000	-	-	-	Abi
DYD1_k127_4600936_1	331113.SNE_A14430	1.258e-62	225.0	COG0631@1|root,COG0631@2|Bacteria,2JG4D@204428|Chlamydiae	204428|Chlamydiae	T	Serine threonine protein phosphatase	prpC	-	3.1.3.16	ko:K01090,ko:K20074	-	-	-	-	ko00000,ko01000,ko01009	-	-	-	PP2C_2
DYD1_k127_4600936_0	331113.SNE_A14440	5.404e-113	376.0	COG1104@1|root,COG1104@2|Bacteria,2JFR6@204428|Chlamydiae	204428|Chlamydiae	E	Aminotransferase class-V	nifS	-	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
DYD1_k127_4602970_1	264201.pc0443	1.322e-82	279.0	COG0740@1|root,COG0740@2|Bacteria,2JFZF@204428|Chlamydiae	204428|Chlamydiae	O	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	clpP1	-	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	CLP_protease
DYD1_k127_4602970_2	1121904.ARBP01000007_gene3021	6.895e-53	195.0	COG0253@1|root,COG0253@2|Bacteria,4NF26@976|Bacteroidetes,47KR3@768503|Cytophagia	976|Bacteroidetes	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	dapF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000	-	-	-	DAP_epimerase
DYD1_k127_4602970_0	264201.pc1486	8.055e-134	432.0	COG0686@1|root,COG0686@2|Bacteria,2JFCH@204428|Chlamydiae	204428|Chlamydiae	C	Alanine dehydrogenase/PNT, N-terminal domain	ald	-	1.4.1.1	ko:K00259	ko00250,ko00430,ko01100,map00250,map00430,map01100	-	R00396	RC00008	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
DYD1_k127_4619279_0	468059.AUHA01000002_gene1245	8.958e-154	497.0	COG0702@1|root,COG0702@2|Bacteria,4NEJF@976|Bacteroidetes,1IQ03@117747|Sphingobacteriia	976|Bacteroidetes	GM	Protein of unknown function (DUF2867)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2867,Epimerase,NAD_binding_10
DYD1_k127_4619279_1	331113.SNE_A00390	1.933e-124	411.0	2BADF@1|root,323TX@2|Bacteria,2JG8B@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4645558_0	1282362.AEAC466_21250	5.545e-39	167.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,2KI7D@204458|Caulobacterales	204458|Caulobacterales	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	ESPR,Haemagg_act
DYD1_k127_4655603_0	497965.Cyan7822_2527	3.433e-73	275.0	COG0745@1|root,COG4251@1|root,COG0745@2|Bacteria,COG4251@2|Bacteria,1GHFQ@1117|Cyanobacteria,3KKTE@43988|Cyanothece	1117|Cyanobacteria	T	histidine kinase A domain protein	-	-	-	-	-	-	-	-	-	-	-	-	GAF,HAMP,HATPase_c,HisKA,PAS_2,PAS_3,PAS_9,PHY,Response_reg,dCache_1
DYD1_k127_4663652_4	264201.pc1983	1.13e-31	128.0	COG0176@1|root,COG0176@2|Bacteria,2JG51@204428|Chlamydiae	204428|Chlamydiae	H	Transaldolase/Fructose-6-phosphate aldolase	-	-	2.2.1.2	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA
DYD1_k127_4663652_3	1123514.KB905899_gene1037	3.928e-36	145.0	COG2095@1|root,COG2095@2|Bacteria,1MX5T@1224|Proteobacteria,1RPZ3@1236|Gammaproteobacteria,462GE@72273|Thiotrichales	72273|Thiotrichales	U	MarC family integral membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	MarC
DYD1_k127_4663652_2	331113.SNE_A11040	4.731e-48	175.0	COG0229@1|root,COG0229@2|Bacteria,2JGD0@204428|Chlamydiae	204428|Chlamydiae	C	SelR domain	msrB	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
DYD1_k127_4663652_5	1444711.CCJF01000004_gene2326	1.255e-09	63.0	28QB9@1|root,2ZCTV@2|Bacteria,2JHFB@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4663652_0	331113.SNE_A10010	4.951e-88	303.0	COG3468@1|root,COG3468@2|Bacteria	2|Bacteria	MU	cell adhesion	-	-	-	ko:K02024	-	-	-	-	ko00000,ko02000	1.B.3.1.1	-	-	Autotransporter,NIDO,OMP_b-brl,VPEP
DYD1_k127_4663652_1	1047013.AQSP01000142_gene222	3.798e-52	194.0	COG1680@1|root,COG1680@2|Bacteria,2NNSA@2323|unclassified Bacteria	2|Bacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase,DUF3471
DYD1_k127_4679032_0	1437425.CSEC_1523	2.538e-70	242.0	COG0605@1|root,COG0605@2|Bacteria,2JG4M@204428|Chlamydiae	204428|Chlamydiae	C	Iron/manganese superoxide dismutases, C-terminal domain	chrC	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C
DYD1_k127_4679032_1	529709.PYCH_18500	4.572e-69	245.0	COG0009@1|root,arCOG01952@2157|Archaea,2XVGC@28890|Euryarchaeota,243AA@183968|Thermococci	183968|Thermococci	J	required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine	-	GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360	2.7.7.87	ko:K07566	-	-	R10463	RC00745	ko00000,ko01000,ko03009,ko03016	-	-	-	SUA5,Sua5_yciO_yrdC
DYD1_k127_4679032_2	666684.AfiDRAFT_1773	2.786e-08	55.0	COG1657@1|root,COG1657@2|Bacteria,1MUIP@1224|Proteobacteria,2TRF3@28211|Alphaproteobacteria,3JRDS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Squalene-hopene cyclase C-terminal domain	shc	-	4.2.1.129,5.4.99.17	ko:K06045	ko00909,ko01110,map00909,map01110	-	R07322,R07323	RC01850,RC01851	ko00000,ko00001,ko01000	-	-	-	SQHop_cyclase_C,SQHop_cyclase_N
DYD1_k127_4685056_1	1313421.JHBV01000033_gene2348	1.017e-36	150.0	COG1577@1|root,COG1577@2|Bacteria,4NDYJ@976|Bacteroidetes	976|Bacteroidetes	I	mevalonate kinase	mvaK	-	2.7.1.36	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	M00095	R02245	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	GHMP_kinases_C,GHMP_kinases_N
DYD1_k127_4685056_0	1122179.KB890436_gene1281	6.236e-45	169.0	COG3963@1|root,COG3963@2|Bacteria,4NPMV@976|Bacteroidetes,1IYWA@117747|Sphingobacteriia	976|Bacteroidetes	I	Ribosomal RNA adenine dimethylase	-	-	-	-	-	-	-	-	-	-	-	-	MTS,Methyltransf_25,RrnaAD
DYD1_k127_4685056_2	1313421.JHBV01000008_gene4392	3.775e-07	54.0	COG0457@1|root,COG0457@2|Bacteria,4P298@976|Bacteroidetes,1J19F@117747|Sphingobacteriia	976|Bacteroidetes	S	WD40-like Beta Propeller Repeat	-	-	-	-	-	-	-	-	-	-	-	-	PD40,TPR_19
DYD1_k127_4688102_0	331113.SNE_A19420	2.358e-114	381.0	2CCDD@1|root,2Z99Z@2|Bacteria,2JFXI@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4688102_3	745411.B3C1_04575	5.61e-94	326.0	COG2939@1|root,COG2939@2|Bacteria,1MW05@1224|Proteobacteria,1RQJY@1236|Gammaproteobacteria,1J58C@118884|unclassified Gammaproteobacteria	1236|Gammaproteobacteria	E	COG2939 Carboxypeptidase C (cathepsin A)	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S10
DYD1_k127_4688102_4	926560.KE387027_gene540	1.935e-84	298.0	COG2939@1|root,COG2939@2|Bacteria,1WJMU@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	E	Serine carboxypeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S10
DYD1_k127_4688102_5	2325.TKV_c08560	6.355e-37	147.0	COG0289@1|root,COG0289@2|Bacteria,1TR9D@1239|Firmicutes,248FY@186801|Clostridia,42FCF@68295|Thermoanaerobacterales	186801|Clostridia	E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate	dapB	-	1.17.1.8	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R04198,R04199	RC00478	ko00000,ko00001,ko00002,ko01000	-	-	iHN637.CLJU_RS17035	DapB_C,DapB_N
DYD1_k127_4688102_1	1444712.BN1013_01450	5.523e-109	359.0	COG2877@1|root,COG2877@2|Bacteria,2JFD5@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the KdsA family	kdsA	-	2.5.1.55	ko:K01627	ko00540,ko01100,map00540,map01100	M00063	R03254	RC00435	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	DAHP_synth_1
DYD1_k127_4688102_7	331113.SNE_A19450	2.488e-05	55.0	2EJY2@1|root,32RJ1@2|Bacteria,2JG98@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4688102_2	1444711.CCJF01000005_gene845	2.878e-104	343.0	COG1137@1|root,COG1137@2|Bacteria,2JFFD@204428|Chlamydiae	204428|Chlamydiae	S	ABC transporter	lptB	-	-	ko:K06861	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	1.B.42.1	-	-	ABC_tran
DYD1_k127_4688102_6	69042.WH5701_06631	3.215e-23	100.0	COG1373@1|root,COG1373@2|Bacteria,1GRNG@1117|Cyanobacteria,1H2G8@1129|Synechococcus	1117|Cyanobacteria	S	Domain of unknown function (DUF4143)	-	-	-	-	-	-	-	-	-	-	-	-	AAA_14,DUF4143
DYD1_k127_4704112_6	765952.PUV_13140	1.942e-08	56.0	COG0120@1|root,COG0120@2|Bacteria,2JG19@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate	rpiA	-	5.3.1.6	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167,M00580	R01056	RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	Rib_5-P_isom_A
DYD1_k127_4704112_7	32507.XP_006782115.1	1.209e-06	58.0	KOG2177@1|root,KOG2177@2759|Eukaryota,38F8S@33154|Opisthokonta,3BIN3@33208|Metazoa,3D3GF@33213|Bilateria,48C0K@7711|Chordata,48YGC@7742|Vertebrata,49VS8@7898|Actinopterygii	33208|Metazoa	O	Tripartite motif containing 105	-	-	2.3.2.27	ko:K12034	-	-	-	-	ko00000,ko01000,ko04121	-	-	-	PRY,SPRY,zf-C3HC4,zf-C3HC4_4,zf-RING_UBOX
DYD1_k127_4704112_4	331113.SNE_A07890	2.944e-29	120.0	COG1925@1|root,COG1925@2|Bacteria,2JGB0@204428|Chlamydiae	204428|Chlamydiae	G	PTS HPr component phosphorylation site	-	-	-	ko:K11189	-	-	-	-	ko00000,ko02000	4.A.2.1	-	-	PTS-HPr
DYD1_k127_4704112_1	1444711.CCJF01000005_gene1113	1.102e-196	631.0	COG1164@1|root,COG1164@2|Bacteria,2JFQ1@204428|Chlamydiae	204428|Chlamydiae	E	oligoendopeptidase F	pepF	-	-	ko:K08602	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3,Peptidase_M3_N
DYD1_k127_4704112_2	331113.SNE_A07860	1.081e-37	143.0	COG0234@1|root,COG0234@2|Bacteria,2JG6X@204428|Chlamydiae	204428|Chlamydiae	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	-	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
DYD1_k127_4704112_0	331113.SNE_A07850	8.298e-250	780.0	COG0459@1|root,COG0459@2|Bacteria,2JFDX@204428|Chlamydiae	204428|Chlamydiae	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	GO:0005575,GO:0005576,GO:0005623,GO:0008150,GO:0009966,GO:0009967,GO:0009986,GO:0010646,GO:0010647,GO:0018995,GO:0020003,GO:0023051,GO:0023056,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0065007,GO:0065010,GO:1901222,GO:1901224,GO:1902531,GO:1902533,GO:2000535	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
DYD1_k127_4704112_5	766499.C357_04802	5.508e-20	98.0	COG1238@1|root,COG1238@2|Bacteria,1MWED@1224|Proteobacteria,2U78A@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	DedA family	dedA	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD1_k127_4704112_3	1444711.CCJF01000005_gene737	6.986e-32	130.0	COG0791@1|root,COG0791@2|Bacteria,2JGVF@204428|Chlamydiae	204428|Chlamydiae	M	NlpC/P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60
DYD1_k127_4726449_2	331113.SNE_A05140	6.997e-119	394.0	COG1108@1|root,COG1321@1|root,COG1108@2|Bacteria,COG1321@2|Bacteria,2JFJ5@204428|Chlamydiae	204428|Chlamydiae	P	transport system membrane protein	ytgC	-	-	ko:K11708	ko02010,map02010	M00319	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.15	-	-	ABC-3,Fe_dep_repr_C
DYD1_k127_4726449_3	765952.PUV_02120	1.222e-93	313.0	COG1121@1|root,COG1121@2|Bacteria,2JFS6@204428|Chlamydiae	204428|Chlamydiae	P	Part of an ATP-driven transport system CPn0346 CPn0347 CPn0348 CPn0349 for a metal. Probably responsible for energy coupling to the transport system	CP_0412	-	-	ko:K11710	ko02010,map02010	M00319	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.15	-	-	ABC_tran
DYD1_k127_4726449_4	716544.wcw_1673	3.793e-92	314.0	COG0803@1|root,COG0803@2|Bacteria,2JFSX@204428|Chlamydiae	204428|Chlamydiae	P	Belongs to the bacterial solute-binding protein 9 family	troA	-	-	ko:K11707	ko02010,map02010	M00319	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.15	-	-	ZnuA
DYD1_k127_4726449_5	331113.SNE_A05070	1.859e-62	219.0	2CDV0@1|root,3071V@2|Bacteria,2JG2K@204428|Chlamydiae	204428|Chlamydiae	-	-	CP_0409	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4726449_1	244582.JQAK01000001_gene1694	2.583e-201	639.0	COG3202@1|root,COG3202@2|Bacteria,1MVS9@1224|Proteobacteria,2TSSJ@28211|Alphaproteobacteria,47EX6@766|Rickettsiales	766|Rickettsiales	C	Provides the rickettsial cell with host ATP in exchange for rickettsial ADP. This is an obligate exchange system. This energy acquiring activity is an important component of rickettsial parasitism	tlc1	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0008150,GO:0015711,GO:0015748,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0042221,GO:0042493,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051503,GO:0071702,GO:0071705,GO:0071944,GO:1901264	-	ko:K03301	-	-	-	-	ko00000	2.A.12	-	-	TLC
DYD1_k127_4726449_0	1437425.CSEC_1854	3.222e-209	657.0	COG0481@1|root,COG0481@2|Bacteria,2JFFF@204428|Chlamydiae	204428|Chlamydiae	J	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	lepA	-	-	ko:K03596	ko05134,map05134	-	-	-	ko00000,ko00001	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C
DYD1_k127_4738572_1	765952.PUV_00070	2.173e-115	385.0	COG0468@1|root,COG0468@2|Bacteria,2JFVU@204428|Chlamydiae	204428|Chlamydiae	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	recA	-	-	ko:K03553	ko03440,map03440	M00729	-	-	ko00000,ko00001,ko00002,ko03400	-	-	-	RecA
DYD1_k127_4738572_2	331113.SNE_A00740	3.013e-105	350.0	COG0837@1|root,COG0837@2|Bacteria,2JH4J@204428|Chlamydiae	204428|Chlamydiae	H	Glucokinase	glk	-	2.7.1.2	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucokinase
DYD1_k127_4738572_0	331113.SNE_A17870	3.06e-233	734.0	COG1452@1|root,COG1452@2|Bacteria,2JGPM@204428|Chlamydiae	2|Bacteria	M	Glycosyl hydrolase family 63 C-terminal domain	-	-	-	ko:K22110	-	-	-	-	ko00000,ko02000	1.B.35.1,1.B.35.2	-	-	Glyco_hydro_63
DYD1_k127_4796258_3	1444711.CCJF01000004_gene1941	6.942e-18	92.0	COG0553@1|root,COG0553@2|Bacteria,2JFHJ@204428|Chlamydiae	204428|Chlamydiae	L	swi snf helicase family	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,SNF2_N
DYD1_k127_4796258_1	1444711.CCJF01000004_gene1943	1.08e-118	390.0	COG1054@1|root,COG1054@2|Bacteria,2JFNW@204428|Chlamydiae	204428|Chlamydiae	S	Belongs to the UPF0176 family	yceA	-	-	ko:K07146	-	-	-	-	ko00000	-	-	-	Rhodanese,Rhodanese_C
DYD1_k127_4796258_2	716544.wcw_1570	2.102e-84	284.0	COG0522@1|root,COG0522@2|Bacteria,2JFKA@204428|Chlamydiae	204428|Chlamydiae	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	rpsD	-	-	ko:K02986	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S4,S4
DYD1_k127_4796258_0	762903.Pedsa_1933	2.167e-154	501.0	COG0531@1|root,COG0531@2|Bacteria,4NDU2@976|Bacteroidetes,1IPK3@117747|Sphingobacteriia	976|Bacteroidetes	E	amino acid	-	-	-	ko:K03294	-	-	-	-	ko00000	2.A.3.2	-	-	AA_permease_2
DYD1_k127_4817997_0	1444711.CCJF01000004_gene2142	3.399e-53	195.0	COG1794@1|root,COG1794@2|Bacteria	2|Bacteria	M	racemase activity, acting on amino acids and derivatives	racX	-	5.1.1.13	ko:K01779	ko00250,ko01054,map00250,map01054	-	R00491	RC00302	ko00000,ko00001,ko01000	-	-	-	Asp_Glu_race
DYD1_k127_4817997_3	1243664.CAVL020000035_gene2736	2.294e-18	98.0	COG3104@1|root,COG3104@2|Bacteria,1TP81@1239|Firmicutes,4HAF2@91061|Bacilli,1ZAVZ@1386|Bacillus	91061|Bacilli	E	amino acid peptide transporter	-	-	-	ko:K03305	-	-	-	-	ko00000	2.A.17	-	-	PTR2
DYD1_k127_4817997_1	765952.PUV_17460	3.031e-34	142.0	COG2197@1|root,COG2197@2|Bacteria,2JH8F@204428|Chlamydiae	204428|Chlamydiae	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
DYD1_k127_4822297_0	700598.Niako_2458	8.05e-18	83.0	2E328@1|root,32Y2G@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4822297_1	1403948.Q618_VCMC00003G0435	3.364e-05	46.0	COG0306@1|root,COG0306@2|Bacteria,2GJHK@201174|Actinobacteria,4D4KA@85005|Actinomycetales	201174|Actinobacteria	P	phosphate transporter	pitH	-	-	ko:K03306	-	-	-	-	ko00000	2.A.20	-	-	PHO4
DYD1_k127_4822314_1	331113.SNE_A17150	3.531e-34	134.0	COG1366@1|root,COG1366@2|Bacteria,2JG89@204428|Chlamydiae	204428|Chlamydiae	T	STAS domain	-	-	-	ko:K06378	-	-	-	-	ko00000	-	-	-	STAS
DYD1_k127_4822314_0	264201.pc1243	1.453e-116	384.0	COG0324@1|root,COG0324@2|Bacteria,2JFKY@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)	miaA	-	2.5.1.75	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	-	R01122	RC02820	ko00000,ko00001,ko01000,ko01006,ko03016	-	-	-	IPPT,PPV_E1_C
DYD1_k127_4822314_3	335543.Sfum_2433	4.347e-05	55.0	COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,42RS1@68525|delta/epsilon subdivisions,2WNR1@28221|Deltaproteobacteria,2MQVG@213462|Syntrophobacterales	28221|Deltaproteobacteria	P	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	-	-	-	-	-	-	-	-	-	-	-	-	Na_H_Exchanger,TrkA_N
DYD1_k127_4822314_2	573063.Metin_0013	8.86e-25	115.0	COG0530@1|root,arCOG02881@2157|Archaea,2XVHN@28890|Euryarchaeota,23QPK@183939|Methanococci	183939|Methanococci	P	PFAM Sodium calcium exchanger membrane region	-	GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0008150,GO:0008273,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015085,GO:0015267,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0019725,GO:0022803,GO:0022804,GO:0022821,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030955,GO:0031224,GO:0031226,GO:0031402,GO:0031420,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071804,GO:0071805,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516	-	ko:K07301	-	-	-	-	ko00000,ko02000	2.A.19.5	-	-	Na_Ca_ex
DYD1_k127_4833132_5	331113.SNE_A12600	4.374e-50	182.0	COG0691@1|root,COG0691@2|Bacteria,2JG73@204428|Chlamydiae	204428|Chlamydiae	J	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene	smpB	-	-	ko:K03664	-	-	-	-	ko00000	-	-	-	SmpB
DYD1_k127_4833132_6	765952.PUV_11210	1.503e-25	112.0	COG1495@1|root,COG1495@2|Bacteria	2|Bacteria	O	protein disulfide oxidoreductase activity	lidJ	-	-	ko:K03611	-	-	-	-	ko00000,ko03110	5.A.2.1	-	-	DsbB
DYD1_k127_4833132_1	331113.SNE_A12610	1.164e-133	437.0	COG0592@1|root,COG0592@2|Bacteria,2JFQ0@204428|Chlamydiae	204428|Chlamydiae	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	dnaN	-	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3
DYD1_k127_4833132_2	331113.SNE_A12620	1.495e-81	283.0	COG1195@1|root,COG1195@2|Bacteria,2JG0T@204428|Chlamydiae	204428|Chlamydiae	L	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	recF	-	-	ko:K03629	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	SMC_N
DYD1_k127_4833132_0	1444711.CCJF01000004_gene2420	3.571e-211	670.0	COG0166@1|root,COG0166@2|Bacteria,2JFI4@204428|Chlamydiae	204428|Chlamydiae	F	glucose-6-phosphate isomerase	pgi	-	5.3.1.9	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	M00001,M00004,M00114	R02739,R02740,R03321	RC00376,RC00563	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGI
DYD1_k127_4833132_8	331113.SNE_A12710	9.102e-18	93.0	2ED9E@1|root,3375V@2|Bacteria,2JGFV@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4833132_3	331113.SNE_A12720	5.774e-55	199.0	COG0220@1|root,COG0220@2|Bacteria,2JG2D@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA	trmB	-	2.1.1.33	ko:K03439	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Methyltransf_4
DYD1_k127_4833132_4	331113.SNE_A12730	6.326e-52	190.0	COG0811@1|root,COG0811@2|Bacteria	2|Bacteria	U	bacteriocin transport	-	-	-	ko:K03561	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	MotA_ExbB
DYD1_k127_4833132_7	331113.SNE_A12740	1.194e-22	103.0	COG0848@1|root,COG0848@2|Bacteria	2|Bacteria	U	biopolymer transport protein	-	-	-	ko:K03559	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	ExbD
DYD1_k127_4833132_9	765952.PUV_09470	1.599e-12	67.0	COG1961@1|root,COG1961@2|Bacteria	2|Bacteria	L	recombinase activity	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
DYD1_k127_4833132_10	4565.Traes_1DL_50C4F942D.1	0.0007542	50.0	COG0631@1|root,KOG0698@2759|Eukaryota,37N6C@33090|Viridiplantae,3GBMH@35493|Streptophyta,3KUTD@4447|Liliopsida,3I91Q@38820|Poales	35493|Streptophyta	T	Serine/threonine phosphatases, family 2C, catalytic domain	-	-	3.1.3.16	ko:K17506	-	-	-	-	ko00000,ko01000,ko01009	-	-	-	PP2C
DYD1_k127_4910771_1	1499968.TCA2_5936	1.496e-21	101.0	COG3230@1|root,COG3230@2|Bacteria,1VVFM@1239|Firmicutes,4HW5B@91061|Bacilli,26XWT@186822|Paenibacillaceae	91061|Bacilli	P	Heme oxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Heme_oxygenase
DYD1_k127_4910771_2	1444712.BN1013_00365	6.863e-18	94.0	COG0454@1|root,COG1051@1|root,COG0456@2|Bacteria,COG1051@2|Bacteria	2|Bacteria	F	GDP-mannose mannosyl hydrolase activity	FNV0100	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD1_k127_4910771_0	419610.Mext_1482	8.797e-30	130.0	COG1051@1|root,COG1051@2|Bacteria,1N1W3@1224|Proteobacteria,2UAMY@28211|Alphaproteobacteria,1JUSI@119045|Methylobacteriaceae	28211|Alphaproteobacteria	F	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD1_k127_4911172_1	179408.Osc7112_3686	2.203e-60	218.0	COG1192@1|root,COG1192@2|Bacteria,1G3X7@1117|Cyanobacteria,1H7FD@1150|Oscillatoriales	1117|Cyanobacteria	D	Anion-transporting ATPase	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
DYD1_k127_4911172_2	932678.THERU_01990	7.311e-30	121.0	2DN43@1|root,32VED@2|Bacteria,2G54E@200783|Aquificae	200783|Aquificae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4911172_0	436114.SYO3AOP1_1344	1.983e-145	473.0	COG2217@1|root,COG2217@2|Bacteria,2G4GR@200783|Aquificae	2|Bacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.4	ko:K01533,ko:K12950	-	-	R00086	RC00002	ko00000,ko01000	3.A.3.32,3.A.3.5	-	-	E1-E2_ATPase,Hydrolase
DYD1_k127_4943103_0	716544.wcw_1228	1.06e-43	163.0	COG0272@1|root,COG0272@2|Bacteria,2JFKS@204428|Chlamydiae	204428|Chlamydiae	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	-	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5
DYD1_k127_4943103_1	331113.SNE_A02840	8.68e-22	110.0	COG3468@1|root,COG3468@2|Bacteria,2JHAK@204428|Chlamydiae	204428|Chlamydiae	MU	outer membrane autotransporter barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_4943103_2	1444711.CCJF01000005_gene1797	2.539e-18	95.0	298R7@1|root,2ZVVI@2|Bacteria,2JHEH@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_495322_5	1437425.CSEC_1875	4.65e-35	137.0	COG0593@1|root,COG0593@2|Bacteria,2JFNG@204428|Chlamydiae	204428|Chlamydiae	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	dnaA2	-	-	ko:K02313	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001,ko03032,ko03036	-	-	-	Bac_DnaA,Bac_DnaA_C,DnaA_N
DYD1_k127_495322_1	86106.I862_06075	2.176e-101	339.0	COG0330@1|root,COG0330@2|Bacteria,1MUM8@1224|Proteobacteria,2TRUY@28211|Alphaproteobacteria,47F2C@766|Rickettsiales	766|Rickettsiales	O	COG0330 Membrane protease subunits, stomatin prohibitin homologs	hflC1	-	-	-	-	-	-	-	-	-	-	-	Band_7,Band_7_C
DYD1_k127_495322_7	716544.wcw_0274	5.357e-14	79.0	COG1040@1|root,COG1040@2|Bacteria,2JGGZ@204428|Chlamydiae	204428|Chlamydiae	S	competence protein	-	-	-	-	-	-	-	-	-	-	-	-	Pribosyltran
DYD1_k127_495322_2	331113.SNE_A04800	9.49e-61	240.0	28JF8@1|root,2Z997@2|Bacteria,2JFNE@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_495322_4	1150474.JQJI01000004_gene394	4.264e-40	151.0	COG0509@1|root,COG0509@2|Bacteria,2GD57@200918|Thermotogae	200918|Thermotogae	E	The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein	gcvH	-	-	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	M00532	R01221	RC00022,RC02834	ko00000,ko00001,ko00002	-	-	-	GCV_H
DYD1_k127_495322_3	1444712.BN1013_00158	1.101e-60	216.0	2BM0T@1|root,32FHQ@2|Bacteria,2JG26@204428|Chlamydiae	204428|Chlamydiae	S	Carbohydrate family 9 binding domain-like	-	-	-	-	-	-	-	-	-	-	-	-	CBM9_1
DYD1_k127_495322_0	331113.SNE_A04650	4.726e-106	368.0	28JYE@1|root,2Z9NP@2|Bacteria,2JFF3@204428|Chlamydiae	204428|Chlamydiae	-	-	CP_0319	-	-	-	-	-	-	-	-	-	-	-	SurA_N_3
DYD1_k127_495322_9	94624.Bpet4198	1.158e-05	48.0	COG0667@1|root,COG0667@2|Bacteria,1MVEH@1224|Proteobacteria,2VH1Q@28216|Betaproteobacteria,3T37I@506|Alcaligenaceae	28216|Betaproteobacteria	C	oxidoreductases (related to aryl-alcohol dehydrogenases)	yakC	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD1_k127_4973079_2	1268237.G114_15511	2.882e-19	89.0	COG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,1RP5M@1236|Gammaproteobacteria,1Y3DN@135624|Aeromonadales	135624|Aeromonadales	V	Multidrug resistance protein MdtK	-	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD1_k127_4973079_3	1444712.BN1013_01887	2.533e-07	60.0	COG1215@1|root,COG1215@2|Bacteria,2JFJB@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_4973079_0	1209989.TepiRe1_0703	1.746e-177	567.0	COG0423@1|root,COG0423@2|Bacteria,1TP94@1239|Firmicutes,248FB@186801|Clostridia,42F4M@68295|Thermoanaerobacterales	186801|Clostridia	J	Catalyzes the attachment of glycine to tRNA(Gly)	glyQS	GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101	6.1.1.14	ko:K01880	ko00970,map00970	M00359,M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	HGTP_anticodon,tRNA-synt_2b
DYD1_k127_4973079_1	1444712.BN1013_01886	5.309e-23	104.0	COG3011@1|root,COG3011@2|Bacteria,2JG92@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function, DUF393	-	-	-	-	-	-	-	-	-	-	-	-	DUF393
DYD1_k127_5001265_1	331113.SNE_A05780	2.339e-180	580.0	COG1109@1|root,COG1109@2|Bacteria,2JFUP@204428|Chlamydiae	204428|Chlamydiae	G	Phosphoglucomutase phosphomannomutase	pgcA	-	5.4.2.8	ko:K01840	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	M00114	R01818	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
DYD1_k127_5001265_2	1094980.Mpsy_2921	1.597e-58	207.0	COG0225@1|root,arCOG02816@2157|Archaea,2XWKA@28890|Euryarchaeota,2N9M6@224756|Methanomicrobia	224756|Methanomicrobia	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	-	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
DYD1_k127_5001265_0	765952.PUV_24140	1.7e-196	629.0	COG1480@1|root,COG1480@2|Bacteria,2JFF5@204428|Chlamydiae	204428|Chlamydiae	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	yqfF	-	-	ko:K07037	-	-	-	-	ko00000	-	-	-	7TM-7TMR_HD,7TMR-HDED,HD
DYD1_k127_5050754_2	702450.CUW_1593	4.013e-13	72.0	COG1216@1|root,COG1216@2|Bacteria,1VATJ@1239|Firmicutes,3VUWM@526524|Erysipelotrichia	526524|Erysipelotrichia	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_506050_0	1392490.JHZX01000001_gene3060	0.0002878	53.0	COG0457@1|root,COG3920@1|root,COG0457@2|Bacteria,COG3920@2|Bacteria,4NINT@976|Bacteroidetes,1HWYS@117743|Flavobacteriia	976|Bacteroidetes	T	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA_2,TPR_12,TPR_8,Y_Y_Y
DYD1_k127_5063471_4	331113.SNE_A17600	4.497e-18	89.0	COG0196@1|root,COG0196@2|Bacteria,2JFXU@204428|Chlamydiae	204428|Chlamydiae	H	riboflavin biosynthesis protein	ribF	-	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_syn,Flavokinase
DYD1_k127_5063471_2	331113.SNE_A17590	2.095e-78	269.0	COG0130@1|root,COG0130@2|Bacteria,2JFXN@204428|Chlamydiae	204428|Chlamydiae	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	truB	-	5.4.99.25	ko:K03177	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	TruB_C_2,TruB_N
DYD1_k127_5063471_3	500633.CLOHIR_01222	1.53e-18	90.0	COG0858@1|root,COG0858@2|Bacteria,1VA0P@1239|Firmicutes,24MPB@186801|Clostridia,25RK5@186804|Peptostreptococcaceae	186801|Clostridia	J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA	rbfA	-	-	ko:K02834	-	-	-	-	ko00000,ko03009	-	-	-	RBFA
DYD1_k127_5063471_0	716544.wcw_0858	5.616e-254	805.0	COG0532@1|root,COG0810@1|root,COG0532@2|Bacteria,COG0810@2|Bacteria,2JFVG@204428|Chlamydiae	204428|Chlamydiae	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,IF-2,IF2_N
DYD1_k127_5063471_1	264201.pc0762	1.213e-163	524.0	COG0195@1|root,COG0195@2|Bacteria,2JFHD@204428|Chlamydiae	204428|Chlamydiae	K	Participates in both transcription termination and antitermination	nusA	-	-	ko:K02600	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	HHH_5,KH_5,NusA_N,S1
DYD1_k127_5105767_0	1121289.JHVL01000027_gene225	1.306e-204	662.0	COG0249@1|root,COG0249@2|Bacteria,1TPRJ@1239|Firmicutes,248GI@186801|Clostridia,36DR6@31979|Clostridiaceae	186801|Clostridia	L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	mutS	-	-	ko:K03555	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
DYD1_k127_5131815_4	7213.XP_004533635.1	1.512e-16	93.0	KOG0660@1|root,KOG0660@2759|Eukaryota,38BZX@33154|Opisthokonta,3B9J2@33208|Metazoa,3CRHP@33213|Bilateria,41UW5@6656|Arthropoda,3SH36@50557|Insecta,455HA@7147|Diptera	33208|Metazoa	T	MAP kinase activity. It is involved in the biological process described with protein phosphorylation	MAPK14	GO:0000003,GO:0000075,GO:0000077,GO:0000165,GO:0000166,GO:0000187,GO:0000302,GO:0000303,GO:0000305,GO:0000902,GO:0000922,GO:0001501,GO:0001502,GO:0001525,GO:0001558,GO:0001568,GO:0001756,GO:0001775,GO:0001817,GO:0001819,GO:0001890,GO:0001932,GO:0001934,GO:0001944,GO:0002062,GO:0002225,GO:0002237,GO:0002251,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002385,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002683,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002718,GO:0002720,GO:0002739,GO:0002741,GO:0002759,GO:0002760,GO:0002784,GO:0002791,GO:0002793,GO:0002831,GO:0002832,GO:0002833,GO:0002920,GO:0002921,GO:0002922,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0004708,GO:0004712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006629,GO:0006631,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006935,GO:0006936,GO:0006939,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0006974,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007178,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007507,GO:0007517,GO:0007519,GO:0007564,GO:0007568,GO:0007569,GO:0007610,GO:0008022,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008285,GO:0008340,GO:0008348,GO:0008361,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009612,GO:0009615,GO:0009617,GO:0009620,GO:0009628,GO:0009636,GO:0009653,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010212,GO:0010243,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010758,GO:0010759,GO:0010769,GO:0010827,GO:0010828,GO:0010830,GO:0010831,GO:0010883,GO:0010941,GO:0010952,GO:0010975,GO:0012501,GO:0012505,GO:0014706,GO:0014835,GO:0015630,GO:0016043,GO:0016192,GO:0016202,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0016909,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019395,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030097,GO:0030099,GO:0030111,GO:0030141,GO:0030154,GO:0030162,GO:0030178,GO:0030258,GO:0030278,GO:0030316,GO:0030334,GO:0030335,GO:0030534,GO:0030554,GO:0031098,GO:0031099,GO:0031279,GO:0031281,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031344,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031410,GO:0031570,GO:0031647,GO:0031663,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032101,GO:0032102,GO:0032103,GO:0032147,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032495,GO:0032496,GO:0032501,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032655,GO:0032735,GO:0032787,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0033157,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0034284,GO:0034440,GO:0034599,GO:0034612,GO:0034614,GO:0034644,GO:0034762,GO:0034764,GO:0034774,GO:0035094,GO:0035095,GO:0035239,GO:0035282,GO:0035295,GO:0035556,GO:0035639,GO:0035924,GO:0035994,GO:0036094,GO:0036211,GO:0036230,GO:0038001,GO:0038066,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040016,GO:0040017,GO:0042060,GO:0042119,GO:0042127,GO:0042221,GO:0042246,GO:0042306,GO:0042307,GO:0042325,GO:0042327,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042692,GO:0042742,GO:0042770,GO:0043009,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043403,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0043900,GO:0043901,GO:0043902,GO:0044093,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045445,GO:0045595,GO:0045597,GO:0045598,GO:0045600,GO:0045637,GO:0045639,GO:0045646,GO:0045648,GO:0045661,GO:0045663,GO:0045664,GO:0045786,GO:0045793,GO:0045843,GO:0045844,GO:0045859,GO:0045860,GO:0045862,GO:0045893,GO:0045926,GO:0045927,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046324,GO:0046326,GO:0046620,GO:0046621,GO:0046622,GO:0046677,GO:0046685,GO:0046686,GO:0046777,GO:0046822,GO:0046824,GO:0046903,GO:0048010,GO:0048070,GO:0048079,GO:0048082,GO:0048255,GO:0048273,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048608,GO:0048634,GO:0048635,GO:0048636,GO:0048638,GO:0048639,GO:0048640,GO:0048646,GO:0048670,GO:0048696,GO:0048699,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050727,GO:0050767,GO:0050770,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0050920,GO:0050921,GO:0051019,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051090,GO:0051091,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051216,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051272,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051403,GO:0051525,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051960,GO:0052547,GO:0055021,GO:0055022,GO:0055023,GO:0055024,GO:0055025,GO:0055026,GO:0055114,GO:0060043,GO:0060044,GO:0060045,GO:0060142,GO:0060143,GO:0060205,GO:0060255,GO:0060284,GO:0060341,GO:0060420,GO:0060421,GO:0060429,GO:0060537,GO:0060538,GO:0060548,GO:0060828,GO:0061013,GO:0061053,GO:0061061,GO:0061117,GO:0061387,GO:0061448,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070391,GO:0070555,GO:0070848,GO:0070887,GO:0070935,GO:0071214,GO:0071216,GO:0071219,GO:0071222,GO:0071223,GO:0071241,GO:0071243,GO:0071248,GO:0071276,GO:0071310,GO:0071345,GO:0071347,GO:0071356,GO:0071363,GO:0071396,GO:0071478,GO:0071479,GO:0071482,GO:0071622,GO:0071675,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0072358,GO:0072359,GO:0072593,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090087,GO:0090090,GO:0090316,GO:0090335,GO:0090336,GO:0090398,GO:0090400,GO:0093002,GO:0097159,GO:0097367,GO:0097708,GO:0098542,GO:0098586,GO:0098743,GO:0099503,GO:0101002,GO:0104004,GO:0120035,GO:0140096,GO:1900015,GO:1900150,GO:1900180,GO:1900182,GO:1900407,GO:1900424,GO:1900426,GO:1901214,GO:1901215,GO:1901244,GO:1901265,GO:1901363,GO:1901564,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1901739,GO:1901741,GO:1901796,GO:1901861,GO:1901862,GO:1901863,GO:1902097,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1902680,GO:1902882,GO:1903311,GO:1903312,GO:1903506,GO:1903508,GO:1903530,GO:1903532,GO:1903706,GO:1903708,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904813,GO:1904951,GO:1905048,GO:1905050,GO:1905521,GO:1905523,GO:1905952,GO:2000026,GO:2000112,GO:2000145,GO:2000147,GO:2000377,GO:2000379,GO:2001141,GO:2001182,GO:2001184	2.7.11.24	ko:K04441	ko01522,ko04010,ko04011,ko04013,ko04015,ko04068,ko04071,ko04139,ko04212,ko04218,ko04261,ko04370,ko04380,ko04550,ko04611,ko04620,ko04621,ko04622,ko04624,ko04657,ko04658,ko04659,ko04660,ko04664,ko04668,ko04670,ko04714,ko04722,ko04723,ko04728,ko04750,ko04912,ko04914,ko04917,ko04926,ko04933,ko05014,ko05120,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05164,ko05167,ko05169,ko05205,ko05418,map01522,map04010,map04011,map04013,map04015,map04068,map04071,map04139,map04212,map04218,map04261,map04370,map04380,map04550,map04611,map04620,map04621,map04622,map04624,map04657,map04658,map04659,map04660,map04664,map04668,map04670,map04714,map04722,map04723,map04728,map04750,map04912,map04914,map04917,map04926,map04933,map05014,map05120,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05164,map05167,map05169,map05205,map05418	M00689	-	-	ko00000,ko00001,ko00002,ko01000,ko01001	-	-	-	Pkinase
DYD1_k127_5131815_3	331113.SNE_A14880	5.332e-57	201.0	COG0636@1|root,COG0636@2|Bacteria,2JG1V@204428|Chlamydiae	204428|Chlamydiae	C	ATP synthase, subunit	atpK	-	-	ko:K02124	ko00190,ko01100,map00190,map01100	M00159	-	-	ko00000,ko00001,ko00002	3.A.2.2,3.A.2.3	-	-	ATP-synt_C
DYD1_k127_5131815_0	331113.SNE_A14890	1.364e-177	576.0	COG1269@1|root,COG1269@2|Bacteria,2JFCG@204428|Chlamydiae	204428|Chlamydiae	C	ATP synthase, subunit I	atpI	-	-	ko:K02123	ko00190,ko01100,map00190,map01100	M00159	-	-	ko00000,ko00001,ko00002	3.A.2.2,3.A.2.3	-	-	V_ATPase_I
DYD1_k127_5131815_2	331113.SNE_A14900	7.298e-59	210.0	COG1394@1|root,COG1394@2|Bacteria,2JG3P@204428|Chlamydiae	204428|Chlamydiae	C	Produces ATP from ADP in the presence of a proton gradient across the membrane	atpD	-	-	ko:K02120	ko00190,ko01100,map00190,map01100	M00159	-	-	ko00000,ko00001,ko00002	3.A.2.2,3.A.2.3	-	-	ATP-synt_D
DYD1_k127_5131815_1	1437425.CSEC_1136	1.149e-123	398.0	COG1156@1|root,COG1156@2|Bacteria,2JFMM@204428|Chlamydiae	204428|Chlamydiae	F	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit	atpB	-	-	ko:K02118	ko00190,ko01100,map00190,map01100	M00159	-	-	ko00000,ko00001,ko00002	3.A.2.2,3.A.2.3	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD1_k127_5150601_2	331113.SNE_A20940	8.752e-19	96.0	COG3210@1|root,COG3210@2|Bacteria,2JGX3@204428|Chlamydiae	204428|Chlamydiae	U	Parallel beta-helix repeats	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5150601_0	331113.SNE_A03430	3.734e-104	358.0	COG2831@1|root,COG2831@2|Bacteria	2|Bacteria	U	hemolysin activation secretion protein	-	-	-	-	-	-	-	-	-	-	-	-	POTRA,POTRA_2,ShlB
DYD1_k127_5150601_1	373994.Riv7116_3645	5.698e-33	139.0	COG0697@1|root,COG0697@2|Bacteria,1G4FV@1117|Cyanobacteria	1117|Cyanobacteria	EG	integral membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	EamA
DYD1_k127_5155680_5	716544.wcw_0324	2.522e-30	126.0	COG1075@1|root,COG1075@2|Bacteria,2JGD8@204428|Chlamydiae	204428|Chlamydiae	S	Lipase (class 2)	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD1_k127_5155680_1	331113.SNE_A10750	9.925e-66	233.0	COG5373@1|root,COG5373@2|Bacteria	2|Bacteria	KLT	membrane	-	-	-	-	-	-	-	-	-	-	-	-	DUF2339
DYD1_k127_5155680_3	264201.pc0766	2.072e-54	209.0	COG4166@1|root,COG4166@2|Bacteria,2JFKE@204428|Chlamydiae	204428|Chlamydiae	E	transmembrane transport	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5155680_0	331113.SNE_A10700	9.291e-110	374.0	COG4166@1|root,COG4166@2|Bacteria,2JFE2@204428|Chlamydiae	204428|Chlamydiae	E	peptide ABC transporter, periplasmic	oppA_2	-	-	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	SBP_bac_5
DYD1_k127_5155680_7	706587.Desti_2706	0.0005772	48.0	COG1950@1|root,COG1950@2|Bacteria,1N1DF@1224|Proteobacteria,42TT1@68525|delta/epsilon subdivisions,2WQT0@28221|Deltaproteobacteria	28221|Deltaproteobacteria	S	PFAM Membrane protein of	-	-	-	ko:K08972	-	-	-	-	ko00000	-	-	-	Phage_holin_4_2
DYD1_k127_5155680_6	331113.SNE_A12100	1.433e-05	52.0	COG1950@1|root,COG1950@2|Bacteria,2JGJZ@204428|Chlamydiae	204428|Chlamydiae	S	Mycobacterial 4 TMS phage holin, superfamily IV	-	-	-	ko:K08972	-	-	-	-	ko00000	-	-	-	Phage_holin_4_2
DYD1_k127_5155680_2	765952.PUV_17670	2.948e-57	209.0	COG3271@1|root,COG3271@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C39_2
DYD1_k127_5155680_4	331113.SNE_A11440	4.848e-40	157.0	COG0477@1|root,COG2814@2|Bacteria,2JGQX@204428|Chlamydiae	204428|Chlamydiae	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_5181711_1	331113.SNE_A22770	1.144e-107	368.0	COG1215@1|root,COG1215@2|Bacteria,2JH6V@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
DYD1_k127_5181711_0	716544.wcw_1370	1.622e-243	780.0	COG0204@1|root,COG0236@1|root,COG0318@1|root,COG0204@2|Bacteria,COG0236@2|Bacteria,COG0318@2|Bacteria,2JFJE@204428|Chlamydiae	204428|Chlamydiae	IQ	AMP-binding enzyme	aas	-	6.2.1.20	ko:K01909	ko00071,map00071	-	R01406	RC00014,RC00039	ko00000,ko00001,ko01000	-	-	-	AMP-binding,Acyltransferase,PP-binding
DYD1_k127_5181711_2	1444712.BN1013_01178	5.621e-90	301.0	COG0215@1|root,COG0215@2|Bacteria,2JFNB@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class-I aminoacyl-tRNA synthetase family	cysS	-	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_2,tRNA-synt_1e
DYD1_k127_518553_2	331113.SNE_A08750	4.63e-23	100.0	COG0438@1|root,COG0438@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	rfaG	-	-	ko:K02844	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT4	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
DYD1_k127_518553_0	331113.SNE_A08740	5.431e-148	480.0	COG1560@1|root,COG1560@2|Bacteria,2JH1S@204428|Chlamydiae	204428|Chlamydiae	M	Bacterial lipid A biosynthesis acyltransferase	CP_0676	-	2.3.1.241	ko:K02517	ko00540,ko01100,map00540,map01100	M00060	R05146	RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Lip_A_acyltrans
DYD1_k127_518553_1	331113.SNE_A08730	7.122e-50	186.0	COG1385@1|root,COG1385@2|Bacteria,2JG7Y@204428|Chlamydiae	204428|Chlamydiae	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	rsmE	-	2.1.1.193	ko:K09761	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_RNA
DYD1_k127_518553_4	246194.CHY_1144	4.719e-07	53.0	COG0469@1|root,COG0469@2|Bacteria,1TPGG@1239|Firmicutes,2489V@186801|Clostridia,42F1S@68295|Thermoanaerobacterales	186801|Clostridia	G	Belongs to the pyruvate kinase family	pyk	-	2.7.1.40	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	M00001,M00002,M00049,M00050	R00200,R00430,R01138,R01858,R02320	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	PEP-utilizers,PK,PK_C
DYD1_k127_5259877_2	264201.pc1226	1.869e-177	564.0	COG0621@1|root,COG0621@2|Bacteria,2JFRX@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12	rimO	-	2.8.4.4	ko:K14441	-	-	R10652	RC00003,RC03217	ko00000,ko01000,ko03009	-	-	-	Radical_SAM,UPF0004
DYD1_k127_5259877_11	485913.Krac_7286	3.344e-13	72.0	COG0477@1|root,COG2814@2|Bacteria	2|Bacteria	EGP	Major facilitator Superfamily	ywtG	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
DYD1_k127_5259877_5	406552.NJ7G_0084	2.324e-100	339.0	arCOG02685@1|root,arCOG02685@2157|Archaea,2XV10@28890|Euryarchaeota,23SHT@183963|Halobacteria	183963|Halobacteria	G	COG0477 Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
DYD1_k127_5259877_1	331113.SNE_A11650	1.084e-178	564.0	COG1830@1|root,COG1830@2|Bacteria,2JFHK@204428|Chlamydiae	204428|Chlamydiae	G	Fructose-bisphosphate aldolase class	fbaB	-	4.1.2.13	ko:K11645	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	DeoC
DYD1_k127_5259877_3	765952.PUV_11060	2.291e-148	483.0	COG0557@1|root,COG0557@2|Bacteria	2|Bacteria	K	exoribonuclease II activity	rnb	-	3.1.13.1	ko:K01147,ko:K12573	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	OB_RNB,RNB,S1
DYD1_k127_5259877_9	716544.wcw_1086	1.305e-39	164.0	COG2982@1|root,COG2982@2|Bacteria,2JFZM@204428|Chlamydiae	204428|Chlamydiae	M	Protein involved in outer membrane biogenesis	CP_0578	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5259877_8	331113.SNE_A11670	6.25e-52	189.0	COG0494@1|root,COG0494@2|Bacteria,2JGDU@204428|Chlamydiae	204428|Chlamydiae	L	NUDIX domain	-	-	3.6.1.13	ko:K01515	ko00230,map00230	-	R01054	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX
DYD1_k127_5259877_0	331113.SNE_A13270	2.348e-190	611.0	COG0449@1|root,COG0449@2|Bacteria,2JFJR@204428|Chlamydiae	204428|Chlamydiae	M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	glmS	-	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	-	R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002	-	-	-	GATase_6,SIS
DYD1_k127_5259877_7	1444711.CCJF01000005_gene1269	1.842e-79	272.0	COG0500@1|root,COG2226@2|Bacteria,2JHHE@204428|Chlamydiae	204428|Chlamydiae	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
DYD1_k127_5259877_12	882083.SacmaDRAFT_2681	0.0001544	55.0	COG0707@1|root,COG0707@2|Bacteria,2GREI@201174|Actinobacteria,4E1WX@85010|Pseudonocardiales	201174|Actinobacteria	M	Monogalactosyldiacylglycerol (MGDG) synthase	-	-	-	-	-	-	-	-	-	-	-	-	DUF1298,Glyco_tran_28_C,Glyco_trans_1_4,MGDG_synth,WES_acyltransf
DYD1_k127_5259877_6	331113.SNE_A13250	5.46e-89	303.0	COG2239@1|root,COG2239@2|Bacteria,2JG1N@204428|Chlamydiae	204428|Chlamydiae	P	Divalent cation transporter	-	-	-	ko:K06213	-	-	-	-	ko00000,ko02000	1.A.26.1	-	-	CBS,MgtE
DYD1_k127_5259877_4	716544.wcw_1263	1.787e-144	471.0	COG0531@1|root,COG0531@2|Bacteria,2JFCI@204428|Chlamydiae	204428|Chlamydiae	E	Amino acid permease	-	-	-	ko:K20265	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3	-	-	AA_permease_2
DYD1_k127_5263125_7	264201.pc0660	1.502e-21	99.0	COG1561@1|root,COG1561@2|Bacteria,2JG0Y@204428|Chlamydiae	204428|Chlamydiae	S	Domain of unknown function (DUF1732)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1732,YicC_N
DYD1_k127_5263125_6	331113.SNE_A10630	1.696e-23	105.0	COG2389@1|root,COG2389@2|Bacteria	2|Bacteria	S	metal-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2227
DYD1_k127_5263125_3	264201.pc0658	1.539e-69	242.0	COG0164@1|root,COG0164@2|Bacteria,2JFYJ@204428|Chlamydiae	204428|Chlamydiae	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhB	-	3.1.26.4	ko:K03470	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_HII
DYD1_k127_5263125_4	331113.SNE_A07600	5.254e-41	156.0	COG0335@1|root,COG0335@2|Bacteria,2JG56@204428|Chlamydiae	204428|Chlamydiae	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	rplS	-	-	ko:K02884	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L19
DYD1_k127_5263125_2	716544.wcw_0699	1.543e-93	312.0	COG0336@1|root,COG0336@2|Bacteria,2JFXJ@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the RNA methyltransferase TrmD family	trmD	-	2.1.1.228	ko:K00554	-	-	R00597	RC00003,RC00334	ko00000,ko01000,ko03016	-	-	-	tRNA_m1G_MT
DYD1_k127_5263125_5	264201.pc0655	7.377e-25	106.0	COG0228@1|root,COG0228@2|Bacteria,2JGCH@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the bacterial ribosomal protein bS16 family	rpsP	-	-	ko:K02959	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S16
DYD1_k127_5263125_1	1444711.CCJF01000005_gene1770	1.902e-177	567.0	COG0541@1|root,COG0541@2|Bacteria,2JFVZ@204428|Chlamydiae	204428|Chlamydiae	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY	ffh	-	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9	-	-	SRP54,SRP54_N,SRP_SPB
DYD1_k127_5263125_0	523845.AQXV01000019_gene364	6.264e-200	641.0	COG0474@1|root,arCOG01578@2157|Archaea,2XT4B@28890|Euryarchaeota,23QDK@183939|Methanococci	183939|Methanococci	P	TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.8	ko:K01537	-	-	-	-	ko00000,ko01000	3.A.3.2	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3
DYD1_k127_526704_2	331113.SNE_A14530	1.517e-22	99.0	2EAAF@1|root,334ES@2|Bacteria,2JGCU@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_526704_1	1007103.AFHW01000087_gene6313	1.252e-75	271.0	COG4403@1|root,COG4403@2|Bacteria,1V13V@1239|Firmicutes,4HFSX@91061|Bacilli,26TU0@186822|Paenibacillaceae	91061|Bacilli	V	Lanthionine synthetase C-like protein	spaC1	-	-	ko:K20484	ko02020,ko02024,map02020,map02024	-	-	-	ko00000,ko00001	-	-	-	LANC_like
DYD1_k127_526704_0	765952.PUV_03460	5.129e-210	687.0	2C4IS@1|root,2Z81U@2|Bacteria	2|Bacteria	S	Lantibiotic dehydratase, C terminus	spaB	-	-	ko:K20483	ko02020,ko02024,map02020,map02024	-	-	-	ko00000,ko00001	-	-	-	Lant_dehydr_C,Lant_dehydr_N
DYD1_k127_5288865_2	765952.PUV_25140	1.21e-17	83.0	COG3328@1|root,COG3328@2|Bacteria,2JGVA@204428|Chlamydiae	204428|Chlamydiae	L	Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	Transposase_mut
DYD1_k127_5288865_0	331113.SNE_B25180	8.452e-226	721.0	COG0457@1|root,COG0457@2|Bacteria	331113.SNE_B25180|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5288865_3	331113.SNE_A04470	1.108e-08	57.0	2EJ2Y@1|root,33CU5@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5298384_0	331113.SNE_A16910	5.15e-120	399.0	COG3491@1|root,COG3491@2|Bacteria,2JGE3@204428|Chlamydiae	204428|Chlamydiae	C	Belongs to the iron ascorbate-dependent oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy,DIOX_N
DYD1_k127_5302721_12	1444711.CCJF01000005_gene646	2.182e-57	206.0	COG1317@1|root,COG1317@2|Bacteria,2JG0V@204428|Chlamydiae	204428|Chlamydiae	NU	Type III	yscL	-	-	ko:K03223	ko03070,map03070	M00332,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	FliH
DYD1_k127_5302721_8	331113.SNE_A02900	4.592e-83	283.0	COG4790@1|root,COG4790@2|Bacteria,2JHI6@204428|Chlamydiae	204428|Chlamydiae	U	Type III secretion inner membrane protein SctR	sctR	-	-	ko:K03226	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	FliP
DYD1_k127_5302721_16	331113.SNE_A02890	3.399e-26	110.0	COG4794@1|root,COG4794@2|Bacteria,2JGCB@204428|Chlamydiae	204428|Chlamydiae	U	type III secretion inner membrane protein SctS	sctS	-	-	ko:K03227	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	Bac_export_3
DYD1_k127_5302721_11	331113.SNE_A02880	3.17e-72	253.0	COG4791@1|root,COG4791@2|Bacteria,2JFXE@204428|Chlamydiae	204428|Chlamydiae	U	type III secretion inner membrane protein SctT	sctT	-	-	ko:K03228	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	Bac_export_1
DYD1_k127_5302721_17	331113.SNE_A16530	3.709e-23	111.0	COG0457@1|root,COG0457@2|Bacteria	331113.SNE_A16530|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5302721_13	331113.SNE_A01680	1.089e-40	160.0	COG0494@1|root,COG0494@2|Bacteria,2JH2H@204428|Chlamydiae	204428|Chlamydiae	L	nUDIX hydrolase	-	-	3.6.1.13	ko:K01515	ko00230,map00230	-	R01054	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX
DYD1_k127_5302721_10	1437425.CSEC_2079	2.31e-75	265.0	COG0337@1|root,COG0337@2|Bacteria,2JFXP@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)	aroB	-	4.2.3.4	ko:K01735	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03083	RC00847	ko00000,ko00001,ko00002,ko01000	-	-	-	DHQ_synthase
DYD1_k127_5302721_2	331113.SNE_A11890	3.601e-158	509.0	COG0128@1|root,COG0128@2|Bacteria,2JG7W@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	aroA	-	2.5.1.19	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03460	RC00350	ko00000,ko00001,ko00002,ko01000	-	-	-	EPSP_synthase
DYD1_k127_5302721_15	331113.SNE_A11880	4.536e-29	123.0	COG0703@1|root,COG0703@2|Bacteria,2JGHA@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate	aroK	-	2.7.1.71	ko:K00891	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	SKI
DYD1_k127_5302721_1	331113.SNE_A11870	8.96e-163	519.0	COG0082@1|root,COG0082@2|Bacteria,2JFU7@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system	aroC	-	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000	-	-	-	Chorismate_synt
DYD1_k127_5302721_3	331113.SNE_A02680	6.323e-137	446.0	COG0520@1|root,COG0520@2|Bacteria,2JFTA@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine	sufS	-	2.8.1.7,4.4.1.16	ko:K11717	ko00450,ko01100,map00450,map01100	-	R03599,R11528	RC00961,RC01789,RC02313	ko00000,ko00001,ko01000	-	-	-	Aminotran_5
DYD1_k127_5302721_9	1444711.CCJF01000005_gene632	3.083e-78	274.0	COG0719@1|root,COG0719@2|Bacteria,2JFQN@204428|Chlamydiae	204428|Chlamydiae	O	Uncharacterized protein family (UPF0051)	sufD	-	-	ko:K09015	-	-	-	-	ko00000	-	-	-	UPF0051
DYD1_k127_5302721_5	264201.pc0190	1.84e-98	326.0	COG0396@1|root,COG0396@2|Bacteria,2JFF7@204428|Chlamydiae	204428|Chlamydiae	O	ABC transporter	sufC	-	-	ko:K09013	-	-	-	-	ko00000,ko02000	-	-	-	ABC_tran
DYD1_k127_5302721_0	82654.Pse7367_1934	1.972e-229	717.0	COG0719@1|root,COG0719@2|Bacteria,1G0TH@1117|Cyanobacteria,1H8CG@1150|Oscillatoriales	1117|Cyanobacteria	O	COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component	sufB	-	-	ko:K09014	-	-	-	-	ko00000	-	-	-	UPF0051
DYD1_k127_5302721_18	1158294.JOMI01000001_gene1499	5.472e-17	87.0	29F7N@1|root,3025B@2|Bacteria,4NNR8@976|Bacteroidetes,2G2G7@200643|Bacteroidia	976|Bacteroidetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	NfeD
DYD1_k127_5302721_4	439235.Dalk_5076	7.418e-137	449.0	COG2268@1|root,COG2268@2|Bacteria,1P50K@1224|Proteobacteria,42PJG@68525|delta/epsilon subdivisions,2WQ9J@28221|Deltaproteobacteria,2MMDR@213118|Desulfobacterales	28221|Deltaproteobacteria	S	Flotillin	-	-	-	ko:K07192	ko04910,map04910	-	-	-	ko00000,ko00001,ko03036,ko04131,ko04147	-	-	-	Band_7,Flot
DYD1_k127_5302721_6	264201.pc1833	1.306e-92	312.0	COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,2JFD0@204428|Chlamydiae	204428|Chlamydiae	L	ATP dependent DNA ligase C terminal region	-	-	6.5.1.1	ko:K01971	ko03450,map03450	-	R00381	RC00005	ko00000,ko00001,ko01000,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,LigD_N
DYD1_k127_5302721_7	1444711.CCJF01000005_gene196	1.182e-87	299.0	COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,2JFD0@204428|Chlamydiae	204428|Chlamydiae	L	ATP dependent DNA ligase C terminal region	-	-	6.5.1.1	ko:K01971	ko03450,map03450	-	R00381	RC00005	ko00000,ko00001,ko01000,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,LigD_N
DYD1_k127_5302721_14	331113.SNE_A02590	2.355e-35	137.0	COG1088@1|root,COG1088@2|Bacteria,2JGKV@204428|Chlamydiae	204428|Chlamydiae	M	Male sterility protein	rfbB	-	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD1_k127_5329196_5	1437425.CSEC_1444	2.618e-05	48.0	COG1887@1|root,COG1887@2|Bacteria,2JG2U@204428|Chlamydiae	204428|Chlamydiae	M	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyphos_transf
DYD1_k127_5329196_3	716544.wcw_1056	3.017e-78	274.0	COG0010@1|root,COG0010@2|Bacteria,2JG0D@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the conversion of N-formimidoyl-L-glutamate to L-glutamate and formamide	hutG	-	3.5.3.8	ko:K01479	ko00340,ko01100,map00340,map01100	M00045	R02285	RC00221,RC00681	ko00000,ko00001,ko00002,ko01000	-	-	-	Arginase
DYD1_k127_5329196_1	1124780.ANNU01000044_gene537	2.419e-132	433.0	COG1228@1|root,COG1228@2|Bacteria,4NE6C@976|Bacteroidetes,47K5F@768503|Cytophagia	976|Bacteroidetes	Q	PFAM Amidohydrolase family	hutI	-	3.5.2.7	ko:K01468	ko00340,ko01100,map00340,map01100	M00045	R02288	RC00683	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
DYD1_k127_5329196_0	926569.ANT_31720	2.495e-227	717.0	COG2987@1|root,COG2987@2|Bacteria,2G5PQ@200795|Chloroflexi	200795|Chloroflexi	E	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate	hutU	-	4.2.1.49	ko:K01712	ko00340,ko01100,map00340,map01100	M00045	R02914	RC00804	ko00000,ko00001,ko00002,ko01000	-	-	-	Urocanase,Urocanase_C,Urocanase_N
DYD1_k127_5329196_4	1163617.SCD_n02056	5.961e-67	235.0	COG1187@1|root,COG1187@2|Bacteria,1MXQE@1224|Proteobacteria,2VI7P@28216|Betaproteobacteria	28216|Betaproteobacteria	J	Belongs to the pseudouridine synthase RsuA family	rluF	-	5.4.99.21	ko:K06182	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
DYD1_k127_5329196_2	459495.SPLC1_S411010	1.165e-95	329.0	COG0534@1|root,COG0534@2|Bacteria,1G2M4@1117|Cyanobacteria,1H8IY@1150|Oscillatoriales	1117|Cyanobacteria	V	Mate efflux family protein	-	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD1_k127_5365975_3	264201.pc0981	6.001e-15	75.0	COG0534@1|root,COG0534@2|Bacteria,2JFXX@204428|Chlamydiae	204428|Chlamydiae	V	MatE	-	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD1_k127_5365975_1	331113.SNE_A09680	3.659e-103	344.0	COG2220@1|root,COG2220@2|Bacteria,2JG2E@204428|Chlamydiae	204428|Chlamydiae	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
DYD1_k127_5365975_2	264201.pc1113	9.651e-41	158.0	COG0500@1|root,COG0500@2|Bacteria,2JGA0@204428|Chlamydiae	204428|Chlamydiae	Q	Histone methylation protein DOT1	-	-	-	-	-	-	-	-	-	-	-	-	DOT1,Methyltransf_31
DYD1_k127_5365975_0	331113.SNE_A09710	2.125e-119	389.0	COG0821@1|root,COG0821@2|Bacteria,2JFII@204428|Chlamydiae	204428|Chlamydiae	I	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate	ispG	-	1.17.7.1,1.17.7.3	ko:K03526	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R08689,R10859	RC01486	ko00000,ko00001,ko00002,ko01000	-	-	-	GcpE
DYD1_k127_5369511_0	1173029.JH980292_gene2472	6.136e-153	499.0	COG0542@1|root,COG0542@2|Bacteria,1G0H1@1117|Cyanobacteria,1H96W@1150|Oscillatoriales	1117|Cyanobacteria	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB2	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
DYD1_k127_5369511_5	1444711.CCJF01000005_gene1759	1.415e-29	119.0	COG0227@1|root,COG0227@2|Bacteria,2JGBN@204428|Chlamydiae	204428|Chlamydiae	J	Ribosomal L28 family	rpmB	-	-	ko:K02902	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L28
DYD1_k127_5369511_3	1444711.CCJF01000004_gene2452	4.397e-62	226.0	COG1502@1|root,COG1502@2|Bacteria,2JG2C@204428|Chlamydiae	204428|Chlamydiae	I	Phospholipase D family protein	CP_0428	-	-	-	-	-	-	-	-	-	-	-	PLDc_2
DYD1_k127_5369511_6	716544.wcw_0324	1.697e-29	130.0	COG1075@1|root,COG1075@2|Bacteria,2JGD8@204428|Chlamydiae	204428|Chlamydiae	S	Lipase (class 2)	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD1_k127_5369511_4	331113.SNE_A17910	2.94e-56	202.0	COG2095@1|root,COG2095@2|Bacteria,2JG4G@204428|Chlamydiae	204428|Chlamydiae	U	UPF0056 inner membrane protein	-	-	-	ko:K05595	-	-	-	-	ko00000,ko02000	2.A.95.1	-	-	MarC
DYD1_k127_5369511_2	331113.SNE_A17920	2.618e-63	224.0	COG0101@1|root,COG0101@2|Bacteria,2JG1S@204428|Chlamydiae	204428|Chlamydiae	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	truA2	-	5.4.99.12	ko:K06173	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	PseudoU_synth_1
DYD1_k127_5369511_1	331113.SNE_A17930	3.171e-129	418.0	COG0024@1|root,COG0024@2|Bacteria,2JFE5@204428|Chlamydiae	204428|Chlamydiae	E	Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed	map	-	3.4.11.18	ko:K01265	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M24,SEC-C
DYD1_k127_5413643_3	4113.PGSC0003DMT400043948	0.0005888	47.0	KOG0800@1|root,KOG0800@2759|Eukaryota,37JHM@33090|Viridiplantae,3GIAS@35493|Streptophyta,44JDG@71274|asterids	35493|Streptophyta	O	RING-type zinc-finger	-	GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575	2.3.2.27	ko:K19041	-	-	-	-	ko00000,ko01000,ko04121	-	-	-	zf-RING_2
DYD1_k127_5413643_0	591158.SSMG_04325	1.052e-210	677.0	COG0296@1|root,COG0296@2|Bacteria,2GJ5C@201174|Actinobacteria	201174|Actinobacteria	G	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position	glgB	-	2.4.1.18	ko:K00700	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02110	-	ko00000,ko00001,ko00002,ko01000,ko04147	-	CBM48,GH13	-	Alpha-amylase,Alpha-amylase_C,CBM_48
DYD1_k127_5413643_1	716544.wcw_1229	4.816e-60	219.0	2C1EI@1|root,31PGH@2|Bacteria,2JG5Y@204428|Chlamydiae	204428|Chlamydiae	-	-	CP_0278	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5413643_2	765952.PUV_16690	3.192e-50	182.0	COG0621@1|root,COG0621@2|Bacteria,2JFUS@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the methylthiolation of N6- threonylcarbamoyladenosine (t(6)A), leading to the formation of 2- methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine	mtaB	-	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
DYD1_k127_5510491_9	420247.Msm_1289	1.049e-08	63.0	COG2246@1|root,arCOG02228@2157|Archaea,2Y20I@28890|Euryarchaeota,23PR3@183925|Methanobacteria	183925|Methanobacteria	S	PFAM GtrA-like protein	-	-	-	-	-	-	-	-	-	-	-	-	GtrA
DYD1_k127_5510491_1	1150621.SMUL_1619	1.374e-57	207.0	COG0586@1|root,COG0586@2|Bacteria,1MX4M@1224|Proteobacteria,42RMJ@68525|delta/epsilon subdivisions,2YMZV@29547|Epsilonproteobacteria	29547|Epsilonproteobacteria	S	PFAM SNARE associated Golgi protein	dedA	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
DYD1_k127_5510491_6	1444711.CCJF01000005_gene1803	1.417e-26	109.0	COG2824@1|root,COG2824@2|Bacteria,2JGJ2@204428|Chlamydiae	204428|Chlamydiae	P	PhnA domain	phnA	-	-	ko:K06193	ko01120,map01120	-	-	-	ko00000	-	-	-	PhnA,PhnA_Zn_Ribbon
DYD1_k127_5510491_3	234267.Acid_3421	3.677e-43	175.0	COG0791@1|root,COG0791@2|Bacteria,3Y5IG@57723|Acidobacteria	57723|Acidobacteria	M	NlpC/P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60,SPOR
DYD1_k127_5510491_2	1410617.JHXH01000006_gene225	4.255e-47	187.0	COG2843@1|root,COG2843@2|Bacteria,1V20N@1239|Firmicutes,24AI2@186801|Clostridia,3WIG8@541000|Ruminococcaceae	186801|Clostridia	M	D-alanyl-D-alanine carboxypeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M15_4
DYD1_k127_5510491_5	331113.SNE_A16070	8.332e-30	119.0	28X72@1|root,2ZJ5D@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5510491_0	479432.Sros_7423	2.714e-133	431.0	COG0596@1|root,COG0596@2|Bacteria,2I99I@201174|Actinobacteria,4EFS4@85012|Streptosporangiales	201174|Actinobacteria	S	Alpha/beta hydrolase family	dhaA	GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006805,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009987,GO:0016020,GO:0016787,GO:0016824,GO:0018786,GO:0019120,GO:0030312,GO:0042178,GO:0042197,GO:0042206,GO:0042221,GO:0044237,GO:0044248,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:1901575	3.8.1.5	ko:K01563	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05284,R05367,R05368,R05369,R05370,R07669,R07670	RC01317,RC01340,RC01341,RC02013	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
DYD1_k127_5510491_7	1347392.CCEZ01000014_gene2738	3.711e-21	98.0	COG1028@1|root,COG1028@2|Bacteria,1TP76@1239|Firmicutes,247PV@186801|Clostridia,36WMY@31979|Clostridiaceae	186801|Clostridia	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100,1.1.1.6	ko:K00059,ko:K22251	ko00061,ko00333,ko00561,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00561,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R01034,R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD1_k127_5524599_1	331113.SNE_B24500	2.87e-48	177.0	COG1538@1|root,COG1538@2|Bacteria,2JGB1@204428|Chlamydiae	204428|Chlamydiae	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD1_k127_5524599_2	6412.HelroP170916	8.061e-15	87.0	2FER8@1|root,2TG2D@2759|Eukaryota,3AU87@33154|Opisthokonta,3C3WC@33208|Metazoa	33208|Metazoa	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5524599_0	45351.EDO35312	7.319e-99	335.0	28KU8@1|root,2QTAG@2759|Eukaryota,39UXQ@33154|Opisthokonta,3BUEB@33208|Metazoa	33208|Metazoa	S	STELLO glycosyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	STELLO
DYD1_k127_5543177_6	1444711.CCJF01000005_gene210	1.867e-16	83.0	COG0811@1|root,COG0811@2|Bacteria,2JFXS@204428|Chlamydiae	204428|Chlamydiae	U	MotA TolQ ExbB proton channel family protein	exbB	-	-	ko:K03562	ko01120,map01120	-	-	-	ko00000,ko02000	1.A.30.2.2	-	-	MotA_ExbB
DYD1_k127_5543177_3	331113.SNE_A01680	2.153e-66	237.0	COG0494@1|root,COG0494@2|Bacteria,2JH2H@204428|Chlamydiae	204428|Chlamydiae	L	nUDIX hydrolase	-	-	3.6.1.13	ko:K01515	ko00230,map00230	-	R01054	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX
DYD1_k127_5543177_4	251229.Chro_1455	1.373e-49	186.0	COG0596@1|root,COG0596@2|Bacteria,1GQ24@1117|Cyanobacteria	1117|Cyanobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
DYD1_k127_5543177_1	716544.wcw_0109	4.819e-96	320.0	COG0084@1|root,COG0084@2|Bacteria,2JFVX@204428|Chlamydiae	204428|Chlamydiae	L	TatD related DNase	yabD	-	-	ko:K03424	-	-	-	-	ko00000,ko01000	-	-	-	TatD_DNase
DYD1_k127_5543177_2	716544.wcw_1784	1.887e-75	262.0	COG2009@1|root,COG2009@2|Bacteria,2JFCP@204428|Chlamydiae	204428|Chlamydiae	C	succinate dehydrogenase	sdhC	-	-	ko:K00241	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002	-	-	-	-
DYD1_k127_5543177_0	1444711.CCJF01000005_gene205	4.052e-140	447.0	COG1053@1|root,COG1053@2|Bacteria,2JFSU@204428|Chlamydiae	204428|Chlamydiae	C	succinate dehydrogenase	sdhA	-	1.3.5.1,1.3.5.4	ko:K00239	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
DYD1_k127_5615457_1	765952.PUV_22230	3.378e-58	213.0	COG0760@1|root,COG0760@2|Bacteria,2JG1Y@204428|Chlamydiae	204428|Chlamydiae	O	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation	-	-	-	-	-	-	-	-	-	-	-	-	Rotamase_2,SurA_N_3
DYD1_k127_5615457_0	1444711.CCJF01000004_gene1968	1.13e-113	379.0	COG0144@1|root,COG0144@2|Bacteria,2JFP8@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family	rsmB	-	-	-	-	-	-	-	-	-	-	-	Methyltr_RsmB-F
DYD1_k127_5615457_2	1123368.AUIS01000010_gene2379	5.577e-12	72.0	COG2259@1|root,COG2259@2|Bacteria,1MZVP@1224|Proteobacteria,1S8UI@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	membrane	yqjF	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD1_k127_5616825_5	1444712.BN1013_01644	1.454e-53	190.0	COG4974@1|root,COG4974@2|Bacteria,2JFEU@204428|Chlamydiae	204428|Chlamydiae	D	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids	xerC	-	-	ko:K03733	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD1_k127_5616825_7	331113.SNE_A23420	5.601e-36	151.0	COG3468@1|root,COG3468@2|Bacteria,2JHAK@204428|Chlamydiae	204428|Chlamydiae	MU	outer membrane autotransporter barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5616825_1	1408444.JHYC01000008_gene1383	2.261e-138	453.0	COG0531@1|root,COG0531@2|Bacteria,1MUP1@1224|Proteobacteria,1RR0V@1236|Gammaproteobacteria,1JCZU@118969|Legionellales	118969|Legionellales	E	Amino acid permease	-	-	-	ko:K20265	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3	-	-	AA_permease_2
DYD1_k127_5616825_6	158190.SpiGrapes_2109	5.249e-52	193.0	COG1464@1|root,COG1464@2|Bacteria,2J5VI@203691|Spirochaetes	203691|Spirochaetes	M	Belongs to the nlpA lipoprotein family	blpG	-	-	ko:K02073	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	Lipoprotein_9
DYD1_k127_5616825_4	1444711.CCJF01000004_gene2034	3.015e-69	241.0	COG2011@1|root,COG2011@2|Bacteria,2JGUP@204428|Chlamydiae	204428|Chlamydiae	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02072	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	BPD_transp_1
DYD1_k127_5616825_2	574087.Acear_2067	3.743e-94	320.0	COG1135@1|root,COG1135@2|Bacteria,1TPPN@1239|Firmicutes,248PZ@186801|Clostridia,3WA8U@53433|Halanaerobiales	186801|Clostridia	P	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system	metN	-	-	ko:K02071	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	ABC_tran,NIL
DYD1_k127_5616825_8	5888.CAK55755	2.137e-34	145.0	KOG0616@1|root,KOG0616@2759|Eukaryota,3ZB17@5878|Ciliophora	5878|Ciliophora	T	Protein kinase domain	-	-	2.7.11.11	ko:K04345	ko01522,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05146,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05414,map01522,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05146,map05165,map05166,map05169,map05200,map05203,map05205,map05414	M00695	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036	-	-	-	Pkinase
DYD1_k127_5616825_3	331113.SNE_A20410	5.677e-83	283.0	COG1579@1|root,COG1579@2|Bacteria,2JFRJ@204428|Chlamydiae	204428|Chlamydiae	S	C4-type zinc ribbon domain	CP_0228	-	-	ko:K07164	-	-	-	-	ko00000	-	-	-	zf-RING_7
DYD1_k127_5616825_0	331113.SNE_A20270	1.387e-212	672.0	COG0112@1|root,COG0112@2|Bacteria,2JFEM@204428|Chlamydiae	204428|Chlamydiae	E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	glyA	-	2.1.2.1	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	M00140,M00141,M00346,M00532	R00945,R09099	RC00022,RC00112,RC01583,RC02958	ko00000,ko00001,ko00002,ko01000	-	-	-	SHMT
DYD1_k127_562589_1	3218.PP1S54_268V6.1	3.541e-07	63.0	COG2304@1|root,2QSCC@2759|Eukaryota,37KTA@33090|Viridiplantae,3G7B2@35493|Streptophyta	35493|Streptophyta	S	Inter-alpha-trypsin inhibitor heavy	-	-	-	-	-	-	-	-	-	-	-	-	VWA_3
DYD1_k127_562589_0	331113.SNE_A01150	8.239e-88	319.0	COG0457@1|root,COG0457@2|Bacteria	331113.SNE_A01150|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5674319_1	1444712.BN1013_01834	1.445e-68	244.0	COG0682@1|root,COG0682@2|Bacteria,2JFY9@204428|Chlamydiae	204428|Chlamydiae	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	lgt	-	-	-	-	-	-	-	-	-	-	-	LGT
DYD1_k127_5674319_2	765952.PUV_20180	1.051e-39	151.0	COG1576@1|root,COG1576@2|Bacteria,2JGAT@204428|Chlamydiae	204428|Chlamydiae	J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA	rlmH	-	2.1.1.177	ko:K00783	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	SPOUT_MTase
DYD1_k127_5674319_3	331113.SNE_A08420	2.024e-35	140.0	2BVXU@1|root,32V9S@2|Bacteria,2JGBD@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5674319_0	331113.SNE_A08410	5.818e-125	409.0	COG4956@1|root,COG4956@2|Bacteria,2JFPK@204428|Chlamydiae	204428|Chlamydiae	S	TRAM domain	-	-	-	-	-	-	-	-	-	-	-	-	TRAM
DYD1_k127_5674319_4	1444711.CCJF01000005_gene1345	5.539e-07	52.0	COG0736@1|root,COG0736@2|Bacteria,2JGAG@204428|Chlamydiae	204428|Chlamydiae	I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein	acpS	-	2.7.8.7	ko:K00997	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
DYD1_k127_5706590_2	9785.ENSLAFP00000028694	1.463e-08	66.0	COG4886@1|root,KOG4641@2759|Eukaryota,38CVU@33154|Opisthokonta,3B9XR@33208|Metazoa,3D07I@33213|Bilateria,487KK@7711|Chordata,4910F@7742|Vertebrata,3JFS0@40674|Mammalia,351SE@311790|Afrotheria	33208|Metazoa	T	Toll-like receptor 7	TLR7	GO:0000139,GO:0000323,GO:0001774,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0002218,GO:0002221,GO:0002224,GO:0002252,GO:0002253,GO:0002274,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007249,GO:0007252,GO:0008144,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009612,GO:0009615,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016310,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023052,GO:0023056,GO:0030139,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031349,GO:0031399,GO:0031410,GO:0031982,GO:0031984,GO:0032009,GO:0032101,GO:0032103,GO:0032268,GO:0032479,GO:0032481,GO:0032642,GO:0032647,GO:0032648,GO:0032649,GO:0032675,GO:0032677,GO:0032722,GO:0032727,GO:0032728,GO:0032729,GO:0032755,GO:0032757,GO:0032991,GO:0034154,GO:0034162,GO:0035197,GO:0035556,GO:0036019,GO:0036020,GO:0036211,GO:0042035,GO:0042108,GO:0042116,GO:0042175,GO:0042325,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045072,GO:0045078,GO:0045088,GO:0045089,GO:0045321,GO:0045335,GO:0045354,GO:0045356,GO:0045357,GO:0045359,GO:0045414,GO:0045416,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050727,GO:0050729,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061900,GO:0061980,GO:0065007,GO:0071214,GO:0071260,GO:0071496,GO:0071704,GO:0071944,GO:0080090,GO:0080134,GO:0097159,GO:0097708,GO:0098542,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0104004,GO:1901222,GO:1901224,GO:1901363,GO:1901564,GO:1902531,GO:1902533	-	ko:K05404	ko04620,ko05162,ko05164,map04620,map05162,map05164	-	-	-	ko00000,ko00001	-	-	-	LRR_1,LRR_5,LRR_8,TIR
DYD1_k127_5706590_1	1144275.COCOR_06542	4.281e-63	234.0	COG0624@1|root,COG0624@2|Bacteria,1MW20@1224|Proteobacteria,42N09@68525|delta/epsilon subdivisions,2WIRX@28221|Deltaproteobacteria,2YUYT@29|Myxococcales	28221|Deltaproteobacteria	E	Peptidase dimerisation domain	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
DYD1_k127_5706590_0	2880.D7FSC6	1.355e-94	321.0	COG3239@1|root,2QQNB@2759|Eukaryota	2759|Eukaryota	I	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	FAD2	GO:0000003,GO:0002376,GO:0003674,GO:0003824,GO:0004497,GO:0004768,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016215,GO:0016491,GO:0016705,GO:0016709,GO:0016717,GO:0016720,GO:0019752,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0040002,GO:0040012,GO:0040017,GO:0042175,GO:0042335,GO:0042389,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045485,GO:0046394,GO:0048518,GO:0048856,GO:0050183,GO:0050789,GO:0050896,GO:0055114,GO:0065007,GO:0071704,GO:0072330,GO:0098827,GO:1901576	1.14.18.4,1.14.19.16,1.14.19.22,1.14.19.25,1.14.19.33,1.14.19.34,1.14.19.35,1.14.19.36,1.14.19.6	ko:K10256,ko:K10257,ko:K21704,ko:K21710,ko:K21736	ko01040,ko01212,map01040,map01212	-	R11043,R11044	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	DUF3474,FA_desaturase
DYD1_k127_5715530_5	444158.MmarC6_1662	1.226e-13	74.0	arCOG04882@1|root,arCOG04882@2157|Archaea,2Y4S5@28890|Euryarchaeota	28890|Euryarchaeota	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5715530_3	351160.RCIX1527	1.152e-20	93.0	COG1476@1|root,arCOG01864@2157|Archaea,2Y089@28890|Euryarchaeota,2NA1I@224756|Methanomicrobia	224756|Methanomicrobia	K	Helix-turn-helix XRE-family like proteins	-	-	-	ko:K07729	-	-	-	-	ko00000,ko03000	-	-	-	HTH_3
DYD1_k127_5715530_2	1122165.AUHS01000006_gene579	1.786e-55	196.0	COG4954@1|root,COG4954@2|Bacteria,1N0G8@1224|Proteobacteria,1SAFD@1236|Gammaproteobacteria,1JDP2@118969|Legionellales	118969|Legionellales	S	Protein of unknown function (DUF2000)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2000
DYD1_k127_5715530_0	649747.HMPREF0083_02396	2.904e-79	269.0	COG1802@1|root,COG1802@2|Bacteria,1V3VV@1239|Firmicutes,4HI43@91061|Bacilli,27691@186822|Paenibacillaceae	91061|Bacilli	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
DYD1_k127_5715530_1	331113.SNE_A20610	5.215e-61	219.0	COG0789@1|root,COG0789@2|Bacteria	2|Bacteria	K	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding	tipA	-	-	ko:K21744	-	-	-	-	ko00000,ko03000	-	-	-	MerR_1,TipAS
DYD1_k127_5715530_4	765952.PUV_21700	8.87e-14	73.0	COG2334@1|root,COG2334@2|Bacteria,2JG0B@204428|Chlamydiae	204428|Chlamydiae	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
DYD1_k127_5715530_6	264201.pc1205	1.164e-06	51.0	2CIK1@1|root,33PF6@2|Bacteria,2JGY5@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_2
DYD1_k127_5726225_7	643562.Daes_0075	3.159e-65	228.0	COG2605@1|root,COG2605@2|Bacteria,1QW1A@1224|Proteobacteria,42N0X@68525|delta/epsilon subdivisions,2WJYP@28221|Deltaproteobacteria,2MBCG@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	GHMP kinases C terminal	-	-	2.7.1.168	ko:K07031	ko00540,map00540	-	R09770	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	GHMP_kinases_C,GHMP_kinases_N
DYD1_k127_5726225_1	41431.PCC8801_2379	1.882e-173	552.0	COG4976@1|root,COG4976@2|Bacteria,1G3BU@1117|Cyanobacteria,3KHKZ@43988|Cyanothece	1117|Cyanobacteria	S	C-methyltransferase C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_13,Methyltransf_14,Methyltransf_23
DYD1_k127_5726225_3	391612.CY0110_27844	1.016e-128	417.0	COG0451@1|root,COG0451@2|Bacteria,1G40V@1117|Cyanobacteria,3KH4W@43988|Cyanothece	1117|Cyanobacteria	GM	RmlD substrate binding domain	-	-	1.1.1.271	ko:K02377	ko00051,ko00520,ko01100,map00051,map00520,map01100	-	R05692	RC01014	ko00000,ko00001,ko01000	-	-	-	Epimerase
DYD1_k127_5726225_4	123214.PERMA_2004	6.913e-98	330.0	COG0662@1|root,COG0836@1|root,COG0662@2|Bacteria,COG0836@2|Bacteria,2G3NN@200783|Aquificae	200783|Aquificae	M	mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase	-	-	2.7.7.13,5.3.1.8	ko:K16011	ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025	M00114,M00362	R00885,R01819	RC00002,RC00376	ko00000,ko00001,ko00002,ko01000	-	-	-	MannoseP_isomer,NTP_transferase
DYD1_k127_5726225_2	868864.Dester_1365	1.104e-140	456.0	COG0438@1|root,COG0438@2|Bacteria,2G3UV@200783|Aquificae	200783|Aquificae	M	Glycosyltransferase Family 4	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD1_k127_5726225_6	515635.Dtur_0347	4.962e-79	275.0	COG0438@1|root,COG0438@2|Bacteria	2|Bacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD1_k127_5726225_0	331113.SNE_A22780	0.0	1102.0	COG0550@1|root,COG0550@2|Bacteria,2JFEK@204428|Chlamydiae	204428|Chlamydiae	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	topA	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	SWIB,Topoisom_bac,Toprim,zf-C4_Topoisom
DYD1_k127_5726225_9	331113.SNE_A22740	1.068e-32	137.0	2AUH6@1|root,31K5F@2|Bacteria,2JG8C@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5726225_5	1382359.JIAL01000001_gene1114	4.41e-82	282.0	2C1VH@1|root,2Z7Z3@2|Bacteria,3Y4CU@57723|Acidobacteria,2JJ58@204432|Acidobacteriia	204432|Acidobacteriia	S	3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase	-	-	-	-	-	-	-	-	-	-	-	-	Kdo_hydroxy
DYD1_k127_5726225_8	765952.PUV_24250	1.8e-60	224.0	COG1508@1|root,COG1508@2|Bacteria,2JFWF@204428|Chlamydiae	204428|Chlamydiae	K	RNA polymerase	rpoN	-	-	ko:K03092	ko02020,ko05111,map02020,map05111	-	-	-	ko00000,ko00001,ko03021	-	-	-	Sigma54_AID,Sigma54_CBD,Sigma54_DBD
DYD1_k127_5726225_10	331113.SNE_A05850	1.472e-08	59.0	COG0859@1|root,COG0859@2|Bacteria	2|Bacteria	M	ADP-heptose-lipopolysaccharide heptosyltransferase activity	-	-	-	ko:K02843,ko:K02849	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
DYD1_k127_5742652_0	331113.SNE_A01000	2.97e-189	602.0	COG2804@1|root,COG2804@2|Bacteria,2JFKZ@204428|Chlamydiae	204428|Chlamydiae	NU	General secretion pathway protein E	gspE	-	-	ko:K02454	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSE,T2SSE_N
DYD1_k127_5742652_1	331113.SNE_A01010	1.564e-84	294.0	COG1459@1|root,COG1459@2|Bacteria,2JFUD@204428|Chlamydiae	204428|Chlamydiae	U	General secretion pathway protein F	gspF	-	-	ko:K02455,ko:K02653	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	T2SSF
DYD1_k127_5742652_2	1444711.CCJF01000005_gene539	2.064e-15	80.0	COG4968@1|root,COG4968@2|Bacteria,2JH2P@204428|Chlamydiae	204428|Chlamydiae	NU	Prepilin-type N-terminal cleavage methylation domain	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5780824_0	716544.wcw_1572	2.405e-137	447.0	COG2204@1|root,COG2204@2|Bacteria,2JFQI@204428|Chlamydiae	204428|Chlamydiae	T	Sigma-54 dependent response regulator	atoC	-	-	ko:K07714	ko02020,map02020	M00500	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD1_k127_5780824_2	1121106.JQKB01000028_gene4239	1.465e-07	53.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,2JQ69@204441|Rhodospirillales	204441|Rhodospirillales	T	COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	flbD	-	-	-	-	-	-	-	-	-	-	-	HTH_8,Response_reg,Sigma54_activat
DYD1_k127_5780824_1	331113.SNE_A18980	8.837e-93	320.0	COG2604@1|root,COG2604@2|Bacteria,2JFK8@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function DUF115	-	-	-	-	-	-	-	-	-	-	-	-	MAF_flag10
DYD1_k127_5821784_1	1414720.CBYM010000031_gene2024	2.748e-27	116.0	COG1211@1|root,COG1211@2|Bacteria,1V3M7@1239|Firmicutes,248E6@186801|Clostridia,36G3D@31979|Clostridiaceae	186801|Clostridia	I	Catalyzes the transfer of the cytidylyl group of CTP to D-ribitol 5-phosphate	-	-	2.7.7.40,2.7.7.60	ko:K00991,ko:K21030	ko00040,ko00900,ko01100,ko01110,ko01130,map00040,map00900,map01100,map01110,map01130	M00096	R02921,R05633	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	IspD,adh_short
DYD1_k127_5821784_2	400682.PAC_15720573	4.381e-27	128.0	KOG0583@1|root,KOG0583@2759|Eukaryota,39IX8@33154|Opisthokonta,3BHY0@33208|Metazoa	33208|Metazoa	T	protein serine/threonine kinase activity	-	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564	2.7.11.1	ko:K08811	-	-	-	-	ko00000,ko01000,ko01001,ko03036	-	-	-	Pkinase
DYD1_k127_5821784_0	6669.EFX74573	1.802e-33	137.0	KOG0598@1|root,KOG0598@2759|Eukaryota,38BVS@33154|Opisthokonta,3B9HI@33208|Metazoa,3CTQR@33213|Bilateria,41UHG@6656|Arthropoda	33208|Metazoa	T	Serine/Threonine protein kinases, catalytic domain	SGK1	GO:0000226,GO:0000902,GO:0001558,GO:0002028,GO:0002119,GO:0002164,GO:0003008,GO:0003013,GO:0003014,GO:0003096,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0005246,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006873,GO:0006875,GO:0006883,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007019,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007492,GO:0007498,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007616,GO:0007632,GO:0008015,GO:0008092,GO:0008150,GO:0008152,GO:0008217,GO:0008289,GO:0008306,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009888,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010639,GO:0010646,GO:0010648,GO:0010720,GO:0010765,GO:0010769,GO:0010770,GO:0010941,GO:0010959,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0015459,GO:0015672,GO:0016020,GO:0016043,GO:0016247,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0017080,GO:0017081,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022411,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023057,GO:0030001,GO:0030003,GO:0030004,GO:0030030,GO:0030154,GO:0030182,GO:0030307,GO:0030334,GO:0031109,GO:0031110,GO:0031111,GO:0031113,GO:0031115,GO:0031175,GO:0031323,GO:0031326,GO:0031333,GO:0031344,GO:0031346,GO:0031410,GO:0031960,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032271,GO:0032272,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032886,GO:0032984,GO:0032989,GO:0032990,GO:0033043,GO:0033554,GO:0033993,GO:0034220,GO:0035091,GO:0035556,GO:0036211,GO:0040008,GO:0040012,GO:0042127,GO:0042175,GO:0042221,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043269,GO:0043270,GO:0043401,GO:0043402,GO:0043412,GO:0043423,GO:0043434,GO:0043624,GO:0043933,GO:0044057,GO:0044058,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045927,GO:0048037,GO:0048156,GO:0048382,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051090,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051261,GO:0051270,GO:0051384,GO:0051493,GO:0051494,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0055037,GO:0055065,GO:0055067,GO:0055078,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0060284,GO:0060341,GO:0060453,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070293,GO:0070294,GO:0070507,GO:0070887,GO:0071310,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097435,GO:0097458,GO:0097708,GO:0098771,GO:0098772,GO:0098827,GO:0099106,GO:0120025,GO:0120035,GO:0120036,GO:0120039,GO:0140096,GO:1900006,GO:1901099,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901981,GO:1902903,GO:1902904,GO:1903506,GO:1903827,GO:1904375,GO:1904508,GO:1905475,GO:2000026,GO:2000112,GO:2000145,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237,GO:2001239,GO:2001240	2.7.11.1	ko:K13302,ko:K13303,ko:K13304	ko04068,ko04150,ko04151,ko04960,map04068,map04150,map04151,map04960	-	-	-	ko00000,ko00001,ko01000,ko01001	-	-	-	PX,Pkinase,Pkinase_C
DYD1_k127_5894888_0	1444711.CCJF01000005_gene268	9.731e-85	286.0	COG1088@1|root,COG1088@2|Bacteria,2JGKV@204428|Chlamydiae	204428|Chlamydiae	M	Male sterility protein	rfbB	-	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD1_k127_5894888_3	1444711.CCJF01000005_gene269	4.494e-51	194.0	COG1091@1|root,COG1091@2|Bacteria,2JG0H@204428|Chlamydiae	204428|Chlamydiae	M	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose	rfbD	-	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	RmlD_sub_bind
DYD1_k127_5894888_1	264201.pc0124	7.115e-61	214.0	COG1898@1|root,COG1898@2|Bacteria,2JG3J@204428|Chlamydiae	204428|Chlamydiae	M	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose	-	-	5.1.3.13	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R06514	RC01531	ko00000,ko00001,ko00002,ko01000	-	-	-	dTDP_sugar_isom
DYD1_k127_5894888_2	331113.SNE_A02560	1.895e-55	199.0	COG1496@1|root,COG1496@2|Bacteria,2JG1Z@204428|Chlamydiae	204428|Chlamydiae	S	Multi-copper polyphenol oxidoreductase laccase	-	-	-	ko:K05810	-	-	-	-	ko00000,ko01000	-	-	-	Cu-oxidase_4
DYD1_k127_5917282_1	290397.Adeh_0863	1.457e-45	177.0	COG0624@1|root,COG0624@2|Bacteria,1MW20@1224|Proteobacteria,42N09@68525|delta/epsilon subdivisions,2WIRX@28221|Deltaproteobacteria	28221|Deltaproteobacteria	E	Peptidase dimerisation domain	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
DYD1_k127_5967884_3	1005048.CFU_1424	1.369e-11	66.0	COG0717@1|root,COG0717@2|Bacteria,1MV2J@1224|Proteobacteria,2VIJ0@28216|Betaproteobacteria,4728N@75682|Oxalobacteraceae	28216|Betaproteobacteria	F	Belongs to the dCTP deaminase family	dcd	-	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	dUTPase
DYD1_k127_5967884_0	1444711.CCJF01000005_gene1198	1.613e-137	444.0	COG2255@1|root,COG2255@2|Bacteria,2JFCF@204428|Chlamydiae	204428|Chlamydiae	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing	ruvB	-	3.6.4.12	ko:K03551	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvB_C,RuvB_N
DYD1_k127_5967884_1	331113.SNE_A14520	7.421e-98	334.0	COG2385@1|root,COG2385@2|Bacteria,2JG2X@204428|Chlamydiae	204428|Chlamydiae	D	Stage II sporulation protein	-	-	-	ko:K06381	-	-	-	-	ko00000	-	-	-	SpoIID
DYD1_k127_5967884_2	331113.SNE_A08610	3.977e-50	184.0	COG1694@1|root,COG3956@2|Bacteria,2JG6Q@204428|Chlamydiae	204428|Chlamydiae	S	MazG nucleotide pyrophosphohydrolase domain	-	-	-	ko:K02499	-	-	-	-	ko00000,ko03036	-	-	-	MazG
DYD1_k127_5981947_0	331113.SNE_A13180	1.728e-95	327.0	COG0389@1|root,COG0389@2|Bacteria,2JFG8@204428|Chlamydiae	204428|Chlamydiae	L	Domain of unknown function (DUF4113)	umuC	-	-	ko:K03502	-	-	-	-	ko00000,ko03400	-	-	-	DUF4113,IMS,IMS_C
DYD1_k127_5981947_1	269084.syc0007_d	8.5e-47	171.0	COG1974@1|root,COG1974@2|Bacteria,1G6T1@1117|Cyanobacteria,1H08K@1129|Synechococcus	1117|Cyanobacteria	L	Belongs to the peptidase S24 family	umuD	-	-	ko:K03503	-	-	-	-	ko00000,ko01000,ko01002,ko03400	-	-	-	Peptidase_S24
DYD1_k127_5988425_0	331113.SNE_A01190	6.06e-77	269.0	COG0457@1|root,COG0457@2|Bacteria,2JFXG@204428|Chlamydiae	204428|Chlamydiae	S	Tetratricopeptide repeat	CP_0145	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5988425_1	1123228.AUIH01000092_gene552	2.754e-26	124.0	COG3291@1|root,COG5184@1|root,COG3291@2|Bacteria,COG5184@2|Bacteria,1RA9Y@1224|Proteobacteria,1T5TQ@1236|Gammaproteobacteria,1XNA1@135619|Oceanospirillales	135619|Oceanospirillales	G	regulator of chromosome condensation, RCC1	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_5988425_3	1444712.BN1013_01974	1.27e-16	89.0	COG3637@1|root,COG3637@2|Bacteria	2|Bacteria	M	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety	-	-	-	ko:K03286,ko:K07275	-	-	-	-	ko00000,ko02000	1.B.6	-	-	OMP_b-brl,PagL
DYD1_k127_5988425_4	1352941.M877_26660	2.471e-05	55.0	COG3568@1|root,COG3568@2|Bacteria	2|Bacteria	N	Endonuclease Exonuclease Phosphatase	-	-	-	-	-	-	-	-	-	-	-	-	Exo_endo_phos
DYD1_k127_5988429_1	716544.wcw_0665	1.378e-05	50.0	COG1396@1|root,COG1396@2|Bacteria	2|Bacteria	K	sequence-specific DNA binding	-	-	-	-	-	-	-	-	-	-	-	-	HTH_19,HTH_3
DYD1_k127_5988429_0	1437425.CSEC_2283	5.044e-121	424.0	COG3209@1|root,COG3409@1|root,COG3209@2|Bacteria,COG3409@2|Bacteria	2|Bacteria	M	Peptidoglycan-binding domain 1 protein	cwlK	-	-	ko:K17733	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	PG_binding_1,Peptidase_M15_4,RHS_repeat
DYD1_k127_5998153_4	716544.wcw_1226	3.117e-29	118.0	COG0621@1|root,COG0621@2|Bacteria,2JFWW@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	miaB	-	2.8.4.3	ko:K06168	-	-	R10645,R10646,R10647	RC00003,RC00980,RC03221,RC03222	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,TRAM,UPF0004
DYD1_k127_5998153_1	264201.pc1757	6.064e-53	190.0	COG0102@1|root,COG0102@2|Bacteria,2JGX6@204428|Chlamydiae	204428|Chlamydiae	J	Ribosomal protein L13	-	-	-	ko:K02871	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L13
DYD1_k127_5998153_2	765952.PUV_08110	2.634e-47	173.0	COG0103@1|root,COG0103@2|Bacteria,2JG8N@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the universal ribosomal protein uS9 family	rpsI	-	-	ko:K02996	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S9
DYD1_k127_5998153_3	331635.G5S_0391	6.662e-46	170.0	COG1607@1|root,COG1607@2|Bacteria	2|Bacteria	I	acyl-coa hydrolase	yciA	-	-	-	-	-	-	-	-	-	-	-	4HBT
DYD1_k127_5998153_0	716544.wcw_0678	1.632e-158	514.0	COG2317@1|root,COG2317@2|Bacteria,2JFNU@204428|Chlamydiae	204428|Chlamydiae	E	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues	-	-	3.4.17.19	ko:K01299	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M32
DYD1_k127_5998153_5	331113.SNE_A17130	9.095e-22	106.0	29XK7@1|root,30JBA@2|Bacteria,2JG3A@204428|Chlamydiae	331113.SNE_A17130|-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6019082_1	1124780.ANNU01000044_gene487	1.603e-75	262.0	COG1063@1|root,COG1063@2|Bacteria,4P3W3@976|Bacteroidetes	976|Bacteroidetes	E	Glucose dehydrogenase C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,Glu_dehyd_C
DYD1_k127_6019082_0	331113.SNE_A17730	4.096e-211	666.0	COG2303@1|root,COG2303@2|Bacteria,2JGPG@204428|Chlamydiae	204428|Chlamydiae	E	GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
DYD1_k127_6019082_3	101852.XP_008086004.1	4.577e-05	51.0	KOG0800@1|root,KOG0800@2759|Eukaryota,39XDN@33154|Opisthokonta,3P1WN@4751|Fungi,3QPWY@4890|Ascomycota,20ZNP@147548|Leotiomycetes	4751|Fungi	O	Zinc finger, C3HC4 type (RING finger)	-	GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0019787,GO:0019789,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0051603,GO:0061630,GO:0061659,GO:0061665,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575	2.3.2.27	ko:K10631	-	-	-	-	ko00000,ko01000,ko03036,ko04121	-	-	-	zf-C3HC4_3,zf-RING_2
DYD1_k127_6019082_5	1151122.AQYD01000004_gene2872	0.0001185	49.0	2DRD4@1|root,33B9X@2|Bacteria,2GTDE@201174|Actinobacteria	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6019082_2	331113.SNE_A08930	1.238e-42	162.0	COG0242@1|root,COG0242@2|Bacteria,2JG53@204428|Chlamydiae	204428|Chlamydiae	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	def	-	3.5.1.88	ko:K01462	-	-	-	-	ko00000,ko01000	-	-	-	Pep_deformylase
DYD1_k127_6019082_4	331113.SNE_A08920	5.159e-05	46.0	COG1314@1|root,COG1314@2|Bacteria,2JGDG@204428|Chlamydiae	204428|Chlamydiae	U	Preprotein translocase SecG subunit	secG	-	-	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecG
DYD1_k127_6040980_6	331113.SNE_A02330	2.116e-44	179.0	COG3307@1|root,COG3307@2|Bacteria	2|Bacteria	M	-O-antigen	-	-	-	ko:K02847	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01005,ko02000	9.B.67.4,9.B.67.5	-	-	Wzy_C
DYD1_k127_6040980_2	331113.SNE_A14190	3.708e-69	243.0	COG0500@1|root,COG2226@2|Bacteria,2JG4F@204428|Chlamydiae	204428|Chlamydiae	H	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)	menG	-	2.1.1.163,2.1.1.201	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116,M00117	R04990,R04993,R06859,R08774,R09736	RC00003,RC01253,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	Ubie_methyltran
DYD1_k127_6040980_4	3659.XP_004138153.1	5.744e-56	207.0	COG0147@1|root,KOG1223@2759|Eukaryota,37NZG@33090|Viridiplantae,3G9ZX@35493|Streptophyta,4JKGM@91835|fabids	35493|Streptophyta	E	Isochorismate synthase	ICS	GO:0002376,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008483,GO:0008909,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009396,GO:0009409,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009627,GO:0009628,GO:0009696,GO:0009697,GO:0009814,GO:0009987,GO:0010118,GO:0010817,GO:0016020,GO:0016053,GO:0016740,GO:0016769,GO:0016853,GO:0016866,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0018958,GO:0019438,GO:0019752,GO:0019867,GO:0031090,GO:0031347,GO:0031348,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032787,GO:0034641,GO:0042180,GO:0042181,GO:0042372,GO:0042374,GO:0042398,GO:0042445,GO:0042446,GO:0042537,GO:0042558,GO:0042559,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046189,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0048519,GO:0048583,GO:0048585,GO:0050486,GO:0050789,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0065007,GO:0065008,GO:0071704,GO:0072330,GO:0080134,GO:0098542,GO:0098588,GO:0098805,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663	5.4.4.2	ko:K02552,ko:K15040	ko00130,ko01053,ko01100,ko01110,ko01130,ko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05166,map00130,map01053,map01100,map01110,map01130,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05166	M00116	R01717	RC00588	ko00000,ko00001,ko00002,ko01000,ko02000,ko03029	1.B.8.1	-	-	Chorismate_bind,Porin_3
DYD1_k127_6040980_1	331113.SNE_A14210	1.616e-108	369.0	COG1165@1|root,COG1165@2|Bacteria,2JG2A@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)	menD	-	2.2.1.9	ko:K02551	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R08165	RC02186	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_N
DYD1_k127_6040980_7	595494.Tola_0432	3.64e-36	145.0	COG0596@1|root,COG0596@2|Bacteria,1R3WK@1224|Proteobacteria,1RQHH@1236|Gammaproteobacteria,1Y6P0@135624|Aeromonadales	135624|Aeromonadales	H	Serine aminopeptidase, S33	-	-	4.2.99.20	ko:K08680	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R08166	RC02148,RC02475	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_1
DYD1_k127_6040980_0	324925.Ppha_2433	2.139e-142	458.0	COG0447@1|root,COG0447@2|Bacteria,1FDH0@1090|Chlorobi	1090|Chlorobi	H	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)	menB	-	4.1.3.36	ko:K01661	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R07263	RC01923	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
DYD1_k127_6040980_5	1227500.C494_17278	7.063e-45	174.0	COG1575@1|root,arCOG00480@2157|Archaea,2XT1M@28890|Euryarchaeota,23TNU@183963|Halobacteria	183963|Halobacteria	H	Belongs to the MenA family. Type 1 subfamily	menA	-	2.5.1.74	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R05617,R06858,R10757	RC02935,RC02936,RC03264	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	UbiA
DYD1_k127_6040980_8	1028806.GGE_0957	6.721e-31	133.0	COG1441@1|root,COG1441@2|Bacteria,1MV33@1224|Proteobacteria,1RRC0@1236|Gammaproteobacteria,1Y77Z@135625|Pasteurellales	135625|Pasteurellales	H	Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB)	menC	-	4.2.1.113	ko:K02549	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R04031	RC01053	ko00000,ko00001,ko00002,ko01000	-	-	-	MR_MLE_C
DYD1_k127_6040980_3	519989.ECTPHS_00030	2.395e-61	225.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,1RMQ4@1236|Gammaproteobacteria,1WWI2@135613|Chromatiales	135613|Chromatiales	IQ	PFAM AMP-dependent synthetase and ligase	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
DYD1_k127_6050015_0	331113.SNE_A09800	4.132e-155	499.0	COG2256@1|root,COG2256@2|Bacteria,2JFSV@204428|Chlamydiae	204428|Chlamydiae	L	MgsA AAA+ ATPase C terminal	rarA	-	-	ko:K07478	-	-	-	-	ko00000	-	-	-	AAA,AAA_assoc_2,MgsA_C,RuvB_N
DYD1_k127_6050015_1	1293047.CBMA010000010_gene450	7.392e-73	251.0	COG0778@1|root,arCOG00288@2157|Archaea,2XTDP@28890|Euryarchaeota,23STU@183963|Halobacteria	183963|Halobacteria	C	COG0778 Nitroreductase	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
DYD1_k127_6050015_2	679926.Mpet_2335	1.518e-17	83.0	COG0531@1|root,arCOG00009@2157|Archaea,2XUU6@28890|Euryarchaeota,2NAJQ@224756|Methanomicrobia	224756|Methanomicrobia	E	PFAM amino acid permease-associated region	-	-	-	ko:K20265	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3	-	-	AA_permease_2
DYD1_k127_6093184_3	331113.SNE_A01160	1.062e-39	161.0	COG5599@1|root,COG5599@2|Bacteria	2|Bacteria	T	protein tyrosine phosphatase activity	yopH	GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0016020,GO:0019867,GO:0030100,GO:0030312,GO:0030313,GO:0031975,GO:0032879,GO:0044462,GO:0044464,GO:0045806,GO:0048519,GO:0048523,GO:0050764,GO:0050765,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0060627,GO:0065007,GO:0071944	-	ko:K04055,ko:K13740	ko05100,ko05132,map05100,map05132	-	-	-	ko00000,ko00001,ko02044	3.A.6.1	-	-	SicP-binding,Y_phosphatase,YopE,YopE_N,YopH_N
DYD1_k127_6093184_4	765952.PUV_14160	6.229e-26	113.0	COG2259@1|root,COG2259@2|Bacteria,2JGCM@204428|Chlamydiae	204428|Chlamydiae	S	DoxX-like family	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
DYD1_k127_6093184_0	1444711.CCJF01000004_gene2460	2.95e-138	448.0	COG0820@1|root,COG0820@2|Bacteria,2JFG3@204428|Chlamydiae	204428|Chlamydiae	J	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	rlmN2	-	2.1.1.192	ko:K06941	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Radical_SAM
DYD1_k127_6093184_2	264201.pc1597	1.415e-53	196.0	COG0558@1|root,COG0558@2|Bacteria,2JFZD@204428|Chlamydiae	204428|Chlamydiae	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pgsA	-	2.7.8.5	ko:K00995	ko00564,ko01100,map00564,map01100	-	R01801	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
DYD1_k127_6093184_1	1444711.CCJF01000004_gene2371	2.895e-119	397.0	COG0297@1|root,COG0297@2|Bacteria,2JFIT@204428|Chlamydiae	204428|Chlamydiae	F	Synthesizes alpha-1,4-glucan chains using ADP-glucose	glgA	-	2.4.1.21	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	M00565	R02421	RC00005	ko00000,ko00001,ko00002,ko01000,ko01003	-	GT5	-	Glyco_transf_5,Glycos_transf_1
DYD1_k127_6121944_0	1121028.ARQE01000003_gene854	1.124e-65	243.0	COG0366@1|root,COG0366@2|Bacteria,1RB8E@1224|Proteobacteria	1224|Proteobacteria	G	trehalose synthase	treS	-	-	-	-	-	-	-	-	-	-	-	Alpha-amylase
DYD1_k127_6121944_1	331113.SNE_A05850	8.664e-44	170.0	COG0859@1|root,COG0859@2|Bacteria	2|Bacteria	M	ADP-heptose-lipopolysaccharide heptosyltransferase activity	-	-	-	ko:K02843,ko:K02849	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
DYD1_k127_6141888_3	331113.SNE_A08240	1.593e-09	59.0	COG1028@1|root,COG1028@2|Bacteria,2JFE8@204428|Chlamydiae	204428|Chlamydiae	IQ	Catalyzes the NADPH-dependent reduction of beta- ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis	fabG	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
DYD1_k127_6141888_1	765952.PUV_09880	1.678e-90	308.0	COG0331@1|root,COG0331@2|Bacteria,2JFRU@204428|Chlamydiae	204428|Chlamydiae	I	malonyl CoA-acyl carrier protein transacylase	fabD	-	2.3.1.39	ko:K00645	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	M00082	R01626,R11671	RC00004,RC00039,RC02727	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyl_transf_1
DYD1_k127_6141888_0	331113.SNE_A08220	8.94e-137	442.0	COG0332@1|root,COG0332@2|Bacteria,2JFVI@204428|Chlamydiae	204428|Chlamydiae	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids	fabH	-	2.3.1.180	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00082,M00083	R10707	RC00004,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACP_syn_III,ACP_syn_III_C
DYD1_k127_6141888_2	331113.SNE_A08180	7.528e-65	227.0	COG0353@1|root,COG0353@2|Bacteria,2JG40@204428|Chlamydiae	204428|Chlamydiae	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	recR	-	-	ko:K06187	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecR,Toprim_4
DYD1_k127_6141888_4	1444711.CCJF01000005_gene1326	0.000946	44.0	COG4775@1|root,COG4775@2|Bacteria,2JFDS@204428|Chlamydiae	204428|Chlamydiae	M	membrane	yaeT	-	-	ko:K07277	-	-	-	-	ko00000,ko02000,ko03029	1.B.33	-	-	Bac_surface_Ag,POTRA
DYD1_k127_6160844_2	561229.Dd1591_4242	6.028e-22	96.0	COG3645@1|root,COG3645@2|Bacteria,1MVMT@1224|Proteobacteria,1RYM2@1236|Gammaproteobacteria	1236|Gammaproteobacteria	S	DNA-damage-inducible protein d	-	-	-	ko:K14623	-	-	-	-	ko00000,ko03400	-	-	-	Bro-N
DYD1_k127_6160844_1	661367.LLO_2141	2.624e-54	205.0	COG1266@1|root,COG1266@2|Bacteria,1N3G9@1224|Proteobacteria,1T6YX@1236|Gammaproteobacteria,1JEJ0@118969|Legionellales	118969|Legionellales	K	CAAX protease self-immunity	-	-	-	-	-	-	-	-	-	-	-	-	Abi,cNMP_binding
DYD1_k127_6160844_0	1444711.CCJF01000004_gene2188	8.69e-87	298.0	COG1538@1|root,COG1538@2|Bacteria,2JFMS@204428|Chlamydiae	204428|Chlamydiae	MU	Outer membrane efflux protein	-	-	-	ko:K18139	ko01501,ko02024,map01501,map02024	M00642,M00643,M00647,M00718,M00768,M00822	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	1.B.17,2.A.6.2	-	-	OEP
DYD1_k127_6191369_2	716544.wcw_1797	5.679e-77	269.0	COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,2JFGW@204428|Chlamydiae	204428|Chlamydiae	H	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	nnrD	-	4.2.1.136,5.1.99.6	ko:K17758,ko:K17759	-	-	-	-	ko00000,ko01000	-	-	-	Carb_kinase,YjeF_N
DYD1_k127_6191369_1	765952.PUV_01380	2.834e-122	400.0	COG0451@1|root,COG0451@2|Bacteria,2JFQM@204428|Chlamydiae	204428|Chlamydiae	M	Polysaccharide biosynthesis protein	gAE4	-	5.1.3.6	ko:K08679	ko00520,ko01100,map00520,map01100	-	R01385	RC00289	ko00000,ko00001,ko01000	-	-	-	Epimerase,GDP_Man_Dehyd
DYD1_k127_6191369_0	264201.pc0186	5.673e-127	415.0	COG1596@1|root,COG1596@2|Bacteria,2JFRQ@204428|Chlamydiae	204428|Chlamydiae	M	Polysaccharide biosynthesis/export protein	wza	-	-	ko:K01991	ko02026,map02026	-	-	-	ko00000,ko00001,ko02000	1.B.18	-	-	Poly_export,SLBB
DYD1_k127_6191369_3	331113.SNE_A02320	3.492e-41	169.0	COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,2JFS4@204428|Chlamydiae	204428|Chlamydiae	DM	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)	wzc	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6197856_6	1162668.LFE_0989	2.774e-51	184.0	COG0114@1|root,COG0114@2|Bacteria,3J0FU@40117|Nitrospirae	40117|Nitrospirae	C	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate	fumC	-	4.2.1.2	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	M00009,M00011,M00173,M00376	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	FumaraseC_C,Lyase_1
DYD1_k127_6197856_8	716544.wcw_1861	1.325e-42	159.0	2CTCU@1|root,32ST6@2|Bacteria,2JGAE@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6197856_0	626522.GCWU000325_01158	9.938e-171	545.0	COG0148@1|root,COG0148@2|Bacteria,4NF5M@976|Bacteroidetes,2FMNI@200643|Bacteroidia,1WCXB@1283313|Alloprevotella	976|Bacteroidetes	H	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis	eno	-	4.2.1.11	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	M00001,M00002,M00003,M00346,M00394	R00658	RC00349	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	-	-	-	Enolase_C,Enolase_N
DYD1_k127_6197856_2	331113.SNE_A22470	1.65e-80	277.0	COG1162@1|root,COG1162@2|Bacteria,2JFKQ@204428|Chlamydiae	204428|Chlamydiae	S	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit	rsgA	-	3.1.3.100	ko:K06949	ko00730,ko01100,map00730,map01100	-	R00615,R02135	RC00002,RC00017	ko00000,ko00001,ko01000,ko03009	-	-	-	RsgA_GTPase,RsgA_N
DYD1_k127_6197856_7	331113.SNE_A22460	5.265e-51	190.0	COG0566@1|root,COG0566@2|Bacteria,2JG2I@204428|Chlamydiae	204428|Chlamydiae	J	SpoU rRNA Methylase family	ysgA	-	-	ko:K03437	-	-	-	-	ko00000,ko03016	-	-	-	SpoU_methylase
DYD1_k127_6197856_5	204536.SULAZ_0882	2.208e-53	208.0	COG0204@1|root,COG1022@1|root,COG0204@2|Bacteria,COG1022@2|Bacteria,2G3NC@200783|Aquificae	200783|Aquificae	I	PFAM AMP-dependent synthetase and ligase	fadD	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C,Acyltransferase,PP-binding
DYD1_k127_6197856_10	1341181.FLJC2902T_06350	2.172e-12	72.0	COG0824@1|root,COG0824@2|Bacteria,4NQGW@976|Bacteroidetes,1I2UT@117743|Flavobacteriia,2NW1F@237|Flavobacterium	976|Bacteroidetes	S	thioesterase	ybgC	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT,4HBT_2
DYD1_k127_6197856_3	1122165.AUHS01000010_gene847	1.634e-74	264.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RW1Q@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	acyl-CoA dehydrogenase	atuD	-	-	ko:K11731	ko00281,map00281	-	R08089	RC01893	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
DYD1_k127_6197856_9	378806.STAUR_5619	3.459e-14	74.0	COG0236@1|root,COG0236@2|Bacteria,1MZ4P@1224|Proteobacteria,42V9M@68525|delta/epsilon subdivisions,2WRDW@28221|Deltaproteobacteria,2YVWU@29|Myxococcales	28221|Deltaproteobacteria	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis	acpP	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	ko:K02078	-	-	-	-	ko00000,ko00001	-	-	-	PP-binding
DYD1_k127_6197856_4	331113.SNE_A22420	7.41e-70	257.0	COG2208@1|root,COG2208@2|Bacteria,2JGDN@204428|Chlamydiae	204428|Chlamydiae	KT	Stage II sporulation protein E (SpoIIE)	rbsU	-	3.1.3.3	ko:K07315	-	-	-	-	ko00000,ko01000,ko03021	-	-	-	Response_reg,SpoIIE
DYD1_k127_6197856_1	331113.SNE_A22370	4.411e-118	392.0	COG0617@1|root,COG0617@2|Bacteria,2JFKF@204428|Chlamydiae	204428|Chlamydiae	H	polymerase	pcnB_1	-	2.7.7.19	ko:K00970	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PolyA_pol,PolyA_pol_RNAbd,tRNA_NucTran2_2
DYD1_k127_6204504_2	1437425.CSEC_1816	3.055e-55	203.0	28N6X@1|root,2ZBBQ@2|Bacteria,2JFR2@204428|Chlamydiae	204428|Chlamydiae	S	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
DYD1_k127_6204504_0	331113.SNE_A15330	4.4e-121	400.0	2DM90@1|root,327AV@2|Bacteria,2JGUS@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF1207)	CP_0263	-	-	-	-	-	-	-	-	-	-	-	DUF1207
DYD1_k127_6204504_1	1380391.JIAS01000020_gene1409	2.337e-73	259.0	COG2355@1|root,COG2355@2|Bacteria,1MWEW@1224|Proteobacteria,2TR5C@28211|Alphaproteobacteria,2JTAI@204441|Rhodospirillales	204441|Rhodospirillales	E	Membrane dipeptidase (Peptidase family M19)	-	-	3.4.13.19	ko:K01273	-	-	-	-	ko00000,ko00537,ko01000,ko01002,ko04147	-	-	-	Peptidase_M19
DYD1_k127_6208812_0	331113.SNE_A20060	2.328e-116	389.0	COG0515@1|root,COG2208@1|root,COG0515@2|Bacteria,COG2208@2|Bacteria,2JFS0@204428|Chlamydiae	204428|Chlamydiae	KLT	Serine threonine protein kinase	pkn5	-	-	-	-	-	-	-	-	-	-	-	Pkinase,SpoIIE
DYD1_k127_6208812_1	331113.SNE_A20110	9.255e-50	186.0	COG1450@1|root,COG4796@1|root,COG1450@2|Bacteria,COG4796@2|Bacteria,2JFMB@204428|Chlamydiae	204428|Chlamydiae	NU	Bacterial type II and III secretion system protein	sctC	-	-	ko:K03219	ko03070,map03070	M00332,M00542	-	-	ko00000,ko00001,ko00002,ko02044	3.A.6.1,3.A.6.3	-	-	Secretin,Secretin_N
DYD1_k127_6216937_2	1444711.CCJF01000005_gene1379	6.665e-58	203.0	COG1154@1|root,COG1154@2|Bacteria,2JFSC@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)	dxs	-	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000	-	-	-	DXP_synthase_N,Transket_pyr,Transketolase_C
DYD1_k127_6216937_3	264202.CF0697	2.806e-08	58.0	COG1722@1|root,COG1722@2|Bacteria	2|Bacteria	L	exodeoxyribonuclease VII activity	xseB	-	3.1.11.6	ko:K03602	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_S
DYD1_k127_6216937_0	331113.SNE_A08900	6.792e-126	415.0	COG1570@1|root,COG1570@2|Bacteria,2JFHH@204428|Chlamydiae	204428|Chlamydiae	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	xseA	-	3.1.11.6	ko:K03601	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_L,tRNA_anti_2
DYD1_k127_6216937_1	331113.SNE_A08910	6.109e-65	228.0	COG0149@1|root,COG0149@2|Bacteria,2JFXW@204428|Chlamydiae	204428|Chlamydiae	F	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	tpiA	-	5.3.1.1	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01015	RC00423	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	TIM
DYD1_k127_6232508_12	716544.wcw_1478	2.152e-45	172.0	2A361@1|root,30RME@2|Bacteria,2JG3F@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6232508_2	1444711.CCJF01000004_gene2009	1.803e-143	463.0	COG0057@1|root,COG0057@2|Bacteria,2JFDU@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the oxidative phosphorylation of glyceraldehyde 3-phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG	gap	GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
DYD1_k127_6232508_13	264201.pc0434	5.867e-43	161.0	COG0203@1|root,COG0203@2|Bacteria,2JG4B@204428|Chlamydiae	204428|Chlamydiae	J	Ribosomal protein L17	rplQ	-	-	ko:K02879	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L17
DYD1_k127_6232508_1	331113.SNE_A21070	3.981e-163	520.0	COG0202@1|root,COG0202@2|Bacteria,2JFH2@204428|Chlamydiae	204428|Chlamydiae	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoA	-	2.7.7.6	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
DYD1_k127_6232508_10	1444712.BN1013_00994	3.184e-50	181.0	COG0100@1|root,COG0100@2|Bacteria,2JG17@204428|Chlamydiae	204428|Chlamydiae	J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	rpsK	-	-	ko:K02948	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S11
DYD1_k127_6232508_9	716544.wcw_1483	2.665e-54	193.0	COG0099@1|root,COG0099@2|Bacteria,2JG65@204428|Chlamydiae	204428|Chlamydiae	J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	rpsM	-	-	ko:K02952	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S13
DYD1_k127_6232508_0	331113.SNE_A21100	1.096e-210	662.0	COG0201@1|root,COG0201@2|Bacteria,2JFDR@204428|Chlamydiae	204428|Chlamydiae	U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently	secY	-	-	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5	-	-	SecY
DYD1_k127_6232508_14	331113.SNE_A21110	1.009e-38	149.0	COG0200@1|root,COG0200@2|Bacteria,2JG4Z@204428|Chlamydiae	204428|Chlamydiae	J	binds to the 23S rRNA	rplO	-	-	ko:K02876	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27A
DYD1_k127_6232508_5	331113.SNE_A21120	2.192e-68	235.0	COG0098@1|root,COG0098@2|Bacteria,2JG03@204428|Chlamydiae	204428|Chlamydiae	J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body	rpsE	-	-	ko:K02988	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S5,Ribosomal_S5_C
DYD1_k127_6232508_15	331113.SNE_A21130	5.818e-31	125.0	COG0256@1|root,COG0256@2|Bacteria,2JG9M@204428|Chlamydiae	204428|Chlamydiae	J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	rplR	-	-	ko:K02881	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L18p
DYD1_k127_6232508_8	331113.SNE_A21140	6.494e-55	198.0	COG0097@1|root,COG0097@2|Bacteria,2JG2H@204428|Chlamydiae	204428|Chlamydiae	J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center	rplF	-	-	ko:K02933	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L6
DYD1_k127_6232508_11	331113.SNE_A21150	4.966e-47	172.0	COG0096@1|root,COG0096@2|Bacteria,2JG30@204428|Chlamydiae	204428|Chlamydiae	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	rpsH	-	-	ko:K02994	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S8
DYD1_k127_6232508_4	765952.PUV_22890	5.947e-69	237.0	COG0094@1|root,COG0094@2|Bacteria,2JFGC@204428|Chlamydiae	204428|Chlamydiae	J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits	rplE	-	-	ko:K02931	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L5,Ribosomal_L5_C
DYD1_k127_6232508_17	1444712.BN1013_00985	9.719e-23	100.0	COG0198@1|root,COG0198@2|Bacteria,2JGBU@204428|Chlamydiae	204428|Chlamydiae	J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	rplX	-	-	ko:K02895	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	ribosomal_L24
DYD1_k127_6232508_6	331113.SNE_A21180	4.315e-62	214.0	COG0093@1|root,COG0093@2|Bacteria,2JG1Q@204428|Chlamydiae	204428|Chlamydiae	J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome	rplN	-	-	ko:K02874	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L14
DYD1_k127_6232508_16	643648.Slip_2228	1.559e-24	104.0	COG0186@1|root,COG0186@2|Bacteria,1V9YC@1239|Firmicutes,24MSW@186801|Clostridia,42K48@68298|Syntrophomonadaceae	186801|Clostridia	J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA	rpsQ	-	-	ko:K02961	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S17
DYD1_k127_6232508_19	331113.SNE_A21200	7.591e-08	57.0	COG0255@1|root,COG0255@2|Bacteria,2JGHR@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the universal ribosomal protein uL29 family	rpmC	-	-	ko:K02904	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L29
DYD1_k127_6232508_7	1444712.BN1013_00981	1.578e-60	211.0	COG0197@1|root,COG0197@2|Bacteria,2JFZ1@204428|Chlamydiae	204428|Chlamydiae	J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs	rplP	-	-	ko:K02878	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L16
DYD1_k127_6232508_3	1437425.CSEC_0220	1.479e-99	329.0	COG0092@1|root,COG0092@2|Bacteria,2JFW3@204428|Chlamydiae	204428|Chlamydiae	J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation	rpsC	-	-	ko:K02982	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	KH_2,Ribosomal_S3_C
DYD1_k127_6232508_18	765952.PUV_22960	3.181e-12	67.0	COG0091@1|root,COG0091@2|Bacteria,2JG6V@204428|Chlamydiae	204428|Chlamydiae	J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	rplV	-	-	ko:K02890	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L22
DYD1_k127_6273217_3	264201.pc0137	2.998e-95	319.0	COG0264@1|root,COG0264@2|Bacteria,2JFNI@204428|Chlamydiae	204428|Chlamydiae	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	tsf	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K02357	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EF_TS
DYD1_k127_6273217_2	1444711.CCJF01000005_gene253	1.081e-118	387.0	COG0052@1|root,COG0052@2|Bacteria,2JFQ4@204428|Chlamydiae	204428|Chlamydiae	J	Belongs to the universal ribosomal protein uS2 family	rpsB	-	-	ko:K02967	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S2
DYD1_k127_6273217_0	1444711.CCJF01000005_gene255	7.122e-206	668.0	COG0768@1|root,COG0768@2|Bacteria,2JFNP@204428|Chlamydiae	204428|Chlamydiae	M	penicillin-binding protein	pbp2	-	-	-	-	-	-	-	-	-	-	-	PBP_dimer,Transpeptidase
DYD1_k127_6273217_4	1444712.BN1013_00253	3.207e-27	116.0	COG0768@1|root,COG0768@2|Bacteria,2JFNP@204428|Chlamydiae	204428|Chlamydiae	M	penicillin-binding protein	pbp2	-	-	-	-	-	-	-	-	-	-	-	PBP_dimer,Transpeptidase
DYD1_k127_6273217_1	596151.DesfrDRAFT_2342	2.904e-146	467.0	COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,42MI8@68525|delta/epsilon subdivisions,2WJDT@28221|Deltaproteobacteria,2M8B0@213115|Desulfovibrionales	28221|Deltaproteobacteria	M	PFAM NAD-dependent epimerase dehydratase	uxs	-	4.1.1.35	ko:K08678	ko00520,ko01100,map00520,map01100	M00361	R01384	RC00508	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
DYD1_k127_6279690_2	880072.Desac_1403	6.656e-76	271.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,42NJG@68525|delta/epsilon subdivisions,2WJ8R@28221|Deltaproteobacteria,2MR7H@213462|Syntrophobacterales	28221|Deltaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K07799	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
DYD1_k127_6279690_1	331113.SNE_A11240	1.832e-91	319.0	COG1538@1|root,COG1538@2|Bacteria,2JG63@204428|Chlamydiae	204428|Chlamydiae	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
DYD1_k127_6279690_0	386456.JQKN01000007_gene3251	1.942e-147	479.0	arCOG02685@1|root,arCOG02685@2157|Archaea,2XV10@28890|Euryarchaeota	28890|Euryarchaeota	G	COG0477 Permeases of the major facilitator superfamily	csbC	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
DYD1_k127_6300813_2	1382306.JNIM01000001_gene876	2.063e-34	135.0	COG0384@1|root,COG0384@2|Bacteria,2G7RE@200795|Chloroflexi	200795|Chloroflexi	S	Phenazine biosynthesis-like protein	-	-	-	-	-	-	-	-	-	-	-	-	PhzC-PhzF
DYD1_k127_6300813_0	1313421.JHBV01000005_gene4520	2.843e-172	548.0	COG3825@1|root,COG3825@2|Bacteria,4NING@976|Bacteroidetes	976|Bacteroidetes	S	VWA domain containing CoxE-like protein	-	-	-	ko:K09989	-	-	-	-	ko00000	-	-	-	VWA_CoxE
DYD1_k127_6300813_1	313606.M23134_02114	3.381e-67	231.0	COG0714@1|root,COG0714@2|Bacteria,4NIHM@976|Bacteroidetes,47P4K@768503|Cytophagia	976|Bacteroidetes	O	AAA domain (dynein-related subfamily)	-	-	-	-	-	-	-	-	-	-	-	-	AAA,AAA_5
DYD1_k127_6330903_0	744980.TRICHSKD4_4228	2.658e-122	402.0	COG3177@1|root,COG3177@2|Bacteria,1MV69@1224|Proteobacteria,2TT3J@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Filamentation induced by cAMP protein fic	-	-	-	-	-	-	-	-	-	-	-	-	DUF4172,Fic
DYD1_k127_634316_1	1444711.CCJF01000005_gene1429	4.891e-147	477.0	COG0488@1|root,COG0488@2|Bacteria,2JFI6@204428|Chlamydiae	204428|Chlamydiae	S	ABC transporter C-terminal domain	-	-	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_CTD,ABC_tran_Xtn
DYD1_k127_634316_0	765952.PUV_07810	1.457e-152	489.0	COG0012@1|root,COG0012@2|Bacteria,2JFRS@204428|Chlamydiae	204428|Chlamydiae	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner	ychF	-	-	ko:K06942	-	-	-	-	ko00000,ko03009	-	-	-	MMR_HSR1,YchF-GTPase_C
DYD1_k127_634316_2	1238182.C882_1834	1.563e-14	77.0	COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,2TRP4@28211|Alphaproteobacteria,2JQ8K@204441|Rhodospirillales	204441|Rhodospirillales	O	HflC and HflK could regulate a protease	hflC	-	-	ko:K04087	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Band_7
DYD1_k127_6358577_0	264462.Bd1393	1.353e-12	79.0	COG4123@1|root,COG4123@2|Bacteria,1NS68@1224|Proteobacteria,42YVC@68525|delta/epsilon subdivisions,2MTQU@213481|Bdellovibrionales,2WTSQ@28221|Deltaproteobacteria	213481|Bdellovibrionales	S	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6358577_1	1201290.M902_0831	1.636e-12	79.0	COG2242@1|root,COG2242@2|Bacteria	2|Bacteria	H	protein methyltransferase activity	-	-	2.1.1.303,2.1.1.319	ko:K11434,ko:K20421	ko01059,ko01130,ko04068,ko04922,map01059,map01130,map04068,map04922	M00830	R10963,R11216,R11217,R11219	RC00003,RC00392,RC02120,RC03388,RC03390	ko00000,ko00001,ko00002,ko01000,ko03036	-	-	-	DOT1,Methyltransf_11,Methyltransf_25
DYD1_k127_6381637_1	1437425.CSEC_2016	1.972e-41	156.0	COG3449@1|root,COG3449@2|Bacteria	2|Bacteria	K	DNA topoisomerase (ATP-hydrolyzing) inhibitor activity	-	-	-	ko:K13652	-	-	-	-	ko00000,ko03000	-	-	-	GyrI-like,HTH_18,SOUL
DYD1_k127_6381637_0	765952.PUV_24000	1.19e-80	276.0	COG1741@1|root,COG1741@2|Bacteria	2|Bacteria	O	Belongs to the pirin family	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin
DYD1_k127_640453_3	889378.Spiaf_1632	1.446e-17	83.0	COG0126@1|root,COG0126@2|Bacteria,2J68Y@203691|Spirochaetes	203691|Spirochaetes	F	Belongs to the phosphoglycerate kinase family	pgk	-	2.7.2.3,5.3.1.1	ko:K00927,ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01015,R01512	RC00002,RC00043,RC00423	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
DYD1_k127_640453_1	1444712.BN1013_00543	1.361e-32	133.0	2E6KG@1|root,33176@2|Bacteria,2JGF9@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_640453_0	331113.SNE_A22090	1.09e-101	336.0	COG2176@1|root,COG3530@1|root,COG2176@2|Bacteria,COG3530@2|Bacteria	2|Bacteria	L	Putative quorum-sensing-regulated virulence factor	ypeB	-	2.7.7.7	ko:K02342,ko:K03763,ko:K09954,ko:K10857	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	QSregVF_b,RNase_T
DYD1_k127_640453_2	331113.SNE_A22080	1.949e-27	115.0	COG0218@1|root,COG0218@2|Bacteria,2JG1C@204428|Chlamydiae	204428|Chlamydiae	D	Necessary for normal cell division and for the maintenance of normal septation	engB	-	-	ko:K03978	-	-	-	-	ko00000,ko03036	-	-	-	MMR_HSR1
DYD1_k127_6409807_0	765952.PUV_03040	0.0	1122.0	COG0466@1|root,COG0466@2|Bacteria,2JFEC@204428|Chlamydiae	204428|Chlamydiae	O	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner	lon	-	3.4.21.53	ko:K01338	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	AAA,LON_substr_bdg,Lon_C
DYD1_k127_6409807_1	1444711.CCJF01000005_gene1417	1.263e-29	122.0	2BVXR@1|root,32IG2@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
DYD1_k127_6411026_4	289376.THEYE_A0933	5.998e-48	178.0	COG0329@1|root,COG0329@2|Bacteria,3J0CF@40117|Nitrospirae	40117|Nitrospirae	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	dapA	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
DYD1_k127_6411026_6	553174.HMPREF0659_A6007	2.788e-05	56.0	COG2259@1|root,COG2259@2|Bacteria,4NK73@976|Bacteroidetes,2FVCZ@200643|Bacteroidia	976|Bacteroidetes	S	Doxx family	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6411026_2	765952.PUV_00440	1.878e-78	272.0	COG5459@1|root,COG5459@2|Bacteria,2JG3Q@204428|Chlamydiae	204428|Chlamydiae	J	Mitochondrial small ribosomal subunit Rsm22	-	-	-	-	-	-	-	-	-	-	-	-	Rsm22
DYD1_k127_6411026_0	331113.SNE_A00610	1.828e-101	344.0	COG0477@1|root,COG2814@2|Bacteria,2JG4R@204428|Chlamydiae	2|Bacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K08151,ko:K08153	-	M00668,M00717	-	-	ko00000,ko00002,ko01504,ko02000	2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75,2.A.1.2.8	-	-	MFS_1,Sugar_tr
DYD1_k127_6411026_1	1444711.CCJF01000005_gene400	1.165e-85	290.0	COG0692@1|root,COG0692@2|Bacteria,2JFZR@204428|Chlamydiae	204428|Chlamydiae	L	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine	ung	-	3.2.2.27	ko:K03648	ko03410,ko05340,map03410,map05340	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
DYD1_k127_6411026_5	1444712.BN1013_00391	7.657e-29	118.0	2E89V@1|root,332NQ@2|Bacteria,2JGEW@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6411026_3	1444711.CCJF01000005_gene184	1.294e-60	215.0	COG1472@1|root,COG1472@2|Bacteria,2JG4V@204428|Chlamydiae	204428|Chlamydiae	G	Glycosyl hydrolase family 3 N terminal domain	ybbD	-	3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyco_hydro_3
DYD1_k127_642501_0	56110.Oscil6304_0605	7.877e-116	394.0	COG5421@1|root,COG5421@2|Bacteria,1G02P@1117|Cyanobacteria,1HDCY@1150|Oscillatoriales	1117|Cyanobacteria	L	Domain of unknown function (DUF4277)	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DUF4277
DYD1_k127_642501_1	1122165.AUHS01000028_gene1770	2.344e-28	114.0	COG5433@1|root,COG5433@2|Bacteria,1MXB5@1224|Proteobacteria,1RSAV@1236|Gammaproteobacteria,1JFCN@118969|Legionellales	118969|Legionellales	L	DDE_Tnp_1-associated	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_1,DDE_Tnp_1_assoc
DYD1_k127_6439000_0	331113.SNE_A02940	3.616e-88	301.0	COG1216@1|root,COG1216@2|Bacteria,2JFZ9@204428|Chlamydiae	204428|Chlamydiae	S	Glycosyltransferase like family 2	-	-	-	ko:K07011	-	-	-	-	ko00000	-	-	-	Glycos_transf_2
DYD1_k127_6448734_1	331113.SNE_A18870	5.924e-30	120.0	COG5531@1|root,COG5531@2|Bacteria,2JGCA@204428|Chlamydiae	204428|Chlamydiae	B	SWI complex, BAF60b domains	-	-	-	-	-	-	-	-	-	-	-	-	SWIB
DYD1_k127_6448734_0	331113.SNE_A18850	1.575e-122	408.0	COG4284@1|root,COG4284@2|Bacteria,2JFIR@204428|Chlamydiae	204428|Chlamydiae	G	UTP--glucose-1-phosphate uridylyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	UDPGP
DYD1_k127_6483698_4	331113.SNE_A06810	4.514e-21	97.0	COG0534@1|root,COG0534@2|Bacteria,2JFHM@204428|Chlamydiae	204428|Chlamydiae	V	MatE	-	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
DYD1_k127_6483698_1	331113.SNE_A09660	4.856e-157	508.0	COG0205@1|root,COG0205@2|Bacteria,2JFH8@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions	pfk	-	2.7.1.90	ko:K00895	ko00010,ko00030,ko00051,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map01100,map01110,map01120,map01130	-	R00764,R02073	RC00017	ko00000,ko00001,ko01000	-	-	-	PFK
DYD1_k127_6483698_0	1437425.CSEC_0827	1.337e-247	773.0	COG0504@1|root,COG0504@2|Bacteria,2JFCN@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates	pyrG	-	6.3.4.2	ko:K01937	ko00240,ko01100,map00240,map01100	M00052	R00571,R00573	RC00010,RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_synth_N,GATase
DYD1_k127_6483698_3	448385.sce4544	2.309e-21	99.0	COG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,42UC6@68525|delta/epsilon subdivisions,2WPDD@28221|Deltaproteobacteria,2YVEN@29|Myxococcales	28221|Deltaproteobacteria	J	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA	-	-	-	ko:K07447	-	-	-	-	ko00000,ko01000	-	-	-	RuvX
DYD1_k127_6483698_2	765952.PUV_16310	5.615e-97	322.0	COG0364@1|root,COG0364@2|Bacteria,2JFEN@204428|Chlamydiae	204428|Chlamydiae	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	zwf	-	1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	G6PD_C,G6PD_N
DYD1_k127_6499845_1	765952.PUV_09000	1.467e-97	327.0	COG4974@1|root,COG4974@2|Bacteria,2JFCQ@204428|Chlamydiae	204428|Chlamydiae	D	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids	xerD	-	-	ko:K04763	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
DYD1_k127_6499845_0	331113.SNE_A11220	2.739e-309	977.0	COG0841@1|root,COG0841@2|Bacteria,2JFXK@204428|Chlamydiae	204428|Chlamydiae	V	AcrB/AcrD/AcrF family	mdtB	-	-	ko:K03296,ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD1_k127_6502970_0	1380394.JADL01000001_gene2744	5.471e-146	472.0	COG0615@1|root,COG2870@1|root,COG0615@2|Bacteria,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,2TRCN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose	-	-	-	-	-	-	-	-	-	-	-	-	CTP_transf_like,PfkB
DYD1_k127_6502970_1	187303.BN69_2082	4.961e-124	405.0	COG0673@1|root,COG0673@2|Bacteria	2|Bacteria	S	inositol 2-dehydrogenase activity	-	-	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
DYD1_k127_6502970_2	316055.RPE_1513	4.044e-92	310.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,3JTIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	-	-	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
DYD1_k127_653744_3	653733.Selin_1194	7.551e-42	168.0	COG0503@1|root,COG0503@2|Bacteria	2|Bacteria	F	purine ribonucleoside salvage	apt	-	2.4.2.7	ko:K00759	ko00230,ko01100,map00230,map01100	-	R00190,R01229,R04378	RC00063	ko00000,ko00001,ko01000,ko04147	-	-	-	Pribosyltran
DYD1_k127_653744_1	1173028.ANKO01000193_gene5880	4.414e-132	437.0	COG2303@1|root,COG2303@2|Bacteria,1G3V7@1117|Cyanobacteria,1H9T9@1150|Oscillatoriales	1117|Cyanobacteria	E	GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N,NAD_binding_8
DYD1_k127_653744_5	388467.A19Y_2874	0.0003061	48.0	2DJZT@1|root,32UE2@2|Bacteria,1G8K4@1117|Cyanobacteria,1HCD2@1150|Oscillatoriales	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_653744_0	706587.Desti_3611	1.51e-134	451.0	COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,42MEI@68525|delta/epsilon subdivisions,2WJEG@28221|Deltaproteobacteria,2MRZC@213462|Syntrophobacterales	28221|Deltaproteobacteria	E	TIGRFAM asparagine synthase (glutamine-hydrolyzing)	-	-	6.3.5.4	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	-	R00578	RC00010	ko00000,ko00001,ko01000,ko01002	-	-	-	Asn_synthase,GATase_7
DYD1_k127_653744_4	7897.ENSLACP00000004354	2.031e-21	104.0	COG1028@1|root,KOG1205@2759|Eukaryota,38GKD@33154|Opisthokonta,3BD72@33208|Metazoa,3CUAY@33213|Bilateria,480F1@7711|Chordata,499GG@7742|Vertebrata	33208|Metazoa	Q	NADP-retinol dehydrogenase activity	RDH8	GO:0001523,GO:0001750,GO:0003008,GO:0003674,GO:0003824,GO:0004033,GO:0004745,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005929,GO:0006066,GO:0006629,GO:0006694,GO:0006720,GO:0006721,GO:0007600,GO:0007601,GO:0008106,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009987,GO:0010817,GO:0016020,GO:0016021,GO:0016101,GO:0016491,GO:0016614,GO:0016616,GO:0031224,GO:0031226,GO:0032501,GO:0034308,GO:0034754,GO:0042445,GO:0042572,GO:0042995,GO:0043005,GO:0043226,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044425,GO:0044441,GO:0044459,GO:0044463,GO:0044464,GO:0050877,GO:0050953,GO:0052650,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120038,GO:1901360,GO:1901362,GO:1901576,GO:1901615	-	ko:K11150	ko00830,ko01100,map00830,map01100	-	R08379	RC00649	ko00000,ko00001,ko01000	-	-	-	adh_short
DYD1_k127_653744_2	1265756.AWZW01000008_gene1121	1.842e-43	176.0	COG1232@1|root,COG1232@2|Bacteria,1MX35@1224|Proteobacteria,2TU7I@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	amine oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase,NAD_binding_8
DYD1_k127_6578136_3	331113.SNE_A00890	9.362e-08	55.0	COG1887@1|root,COG1887@2|Bacteria,2JG2U@204428|Chlamydiae	204428|Chlamydiae	M	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	Glyphos_transf
DYD1_k127_6578136_0	1444711.CCJF01000005_gene524	5.415e-98	330.0	COG1194@1|root,COG1194@2|Bacteria,2JFTR@204428|Chlamydiae	204428|Chlamydiae	L	A G-specific adenine glycosylase	mutY	-	-	ko:K03575	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HhH-GPD,NUDIX_4
DYD1_k127_6578136_1	1123487.KB892857_gene2357	3.057e-54	205.0	COG0438@1|root,COG0438@2|Bacteria,1MU9C@1224|Proteobacteria,2VIBU@28216|Betaproteobacteria,2KWP5@206389|Rhodocyclales	206389|Rhodocyclales	M	Glycosyltransferase Family 4	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
DYD1_k127_6582392_1	331113.SNE_A18550	6.763e-84	283.0	COG0204@1|root,COG0204@2|Bacteria,2JFD3@204428|Chlamydiae	204428|Chlamydiae	I	Acyltransferase	plsB	-	2.3.1.15	ko:K00630	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyltransferase
DYD1_k127_6582392_0	765952.PUV_02500	6.144e-167	551.0	COG1025@1|root,COG1025@2|Bacteria,2JFKH@204428|Chlamydiae	204428|Chlamydiae	O	insulinase family	ide	-	3.4.24.56	ko:K01408	ko05010,map05010	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C,Peptidase_M16_M
DYD1_k127_6664531_1	1444711.CCJF01000005_gene765	4.814e-166	533.0	COG1160@1|root,COG1160@2|Bacteria,2JFJG@204428|Chlamydiae	204428|Chlamydiae	S	GTPase that plays an essential role in the late steps of ribosome biogenesis	der	-	-	ko:K03977	-	-	-	-	ko00000,ko03009	-	-	-	KH_dom-like,MMR_HSR1
DYD1_k127_6664531_0	1444712.BN1013_01380	0.0	1058.0	COG0553@1|root,COG0553@2|Bacteria,2JFGJ@204428|Chlamydiae	204428|Chlamydiae	KL	SNF2 family N-terminal domain	CP_1034	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,SNF2_N,SWIM
DYD1_k127_6709348_4	1408444.JHYC01000027_gene465	2.688e-11	73.0	COG1073@1|root,COG1073@2|Bacteria,1RIWI@1224|Proteobacteria,1S0GF@1236|Gammaproteobacteria,1JCUV@118969|Legionellales	118969|Legionellales	S	Serine aminopeptidase, S33	mhpC	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	Hydrolase_4
DYD1_k127_6709348_3	756272.Plabr_2565	1.116e-35	145.0	COG0500@1|root,COG2226@2|Bacteria	2|Bacteria	Q	methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
DYD1_k127_6709348_2	1444712.BN1013_01102	1.16e-66	233.0	COG2148@1|root,COG2148@2|Bacteria,2JFX4@204428|Chlamydiae	204428|Chlamydiae	M	Bacterial sugar transferase	wcaJ	-	-	-	-	-	-	-	-	-	-	-	Bac_transf
DYD1_k127_6709348_1	264201.pc0550	4.94e-99	336.0	COG0845@1|root,COG0845@2|Bacteria,2JFGK@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	HlyD_D23
DYD1_k127_6709348_0	1288494.EBAPG3_390	3.6e-104	350.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2VHFI@28216|Betaproteobacteria,37207@32003|Nitrosomonadales	28216|Betaproteobacteria	U	AcrB/AcrD/AcrF family	acrD	-	-	ko:K03296,ko:K18138	ko01501,ko01503,map01501,map01503	M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2	-	-	ACR_tran
DYD1_k127_6725767_4	716544.wcw_1732	0.0003134	46.0	COG1663@1|root,COG1663@2|Bacteria,2JFZS@204428|Chlamydiae	204428|Chlamydiae	F	Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA)	lpxK	-	2.7.1.130	ko:K00912	ko00540,ko01100,map00540,map01100	M00060	R04657	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxK
DYD1_k127_6725767_1	331113.SNE_A03690	2.212e-139	453.0	COG0508@1|root,COG0508@2|Bacteria,2JGNQ@204428|Chlamydiae	204428|Chlamydiae	C	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	bfmBB	-	2.3.1.61	ko:K00658	ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R02570,R02571,R08549	RC00004,RC02727,RC02833	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
DYD1_k127_6725767_3	765952.PUV_06100	2.385e-56	203.0	COG0288@1|root,COG0288@2|Bacteria,2JGJ5@204428|Chlamydiae	204428|Chlamydiae	P	Reversible hydration of carbon dioxide	cynT	-	4.2.1.1	ko:K01673	ko00910,map00910	-	R00132,R10092	RC02807	ko00000,ko00001,ko01000	-	-	-	Pro_CA
DYD1_k127_6725767_2	331113.SNE_A16330	2.484e-109	361.0	COG1622@1|root,COG1622@2|Bacteria,2JFR4@204428|Chlamydiae	204428|Chlamydiae	C	COX Aromatic Rich Motif	cyoA	-	1.10.3.10	ko:K02297	ko00190,ko01100,map00190,map01100	M00417	R11335	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.5	-	-	COX2,COX_ARM
DYD1_k127_6725767_0	331113.SNE_A16320	1.807e-299	925.0	COG0843@1|root,COG0843@2|Bacteria,2JFT7@204428|Chlamydiae	204428|Chlamydiae	C	Cytochrome C and Quinol oxidase polypeptide I	cyoB	-	1.10.3.10	ko:K02298	ko00190,ko01100,map00190,map01100	M00417	R11335	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.5	-	-	COX1
DYD1_k127_6737862_0	331113.SNE_A22620	9.573e-184	583.0	COG0506@1|root,COG1012@1|root,COG0506@2|Bacteria,COG1012@2|Bacteria,2JFQE@204428|Chlamydiae	204428|Chlamydiae	CE	Belongs to the aldehyde dehydrogenase family	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh
DYD1_k127_6737862_3	394221.Mmar10_0362	4.473e-23	106.0	COG0406@1|root,COG0406@2|Bacteria,1RHAT@1224|Proteobacteria,2UAQT@28211|Alphaproteobacteria,43XPM@69657|Hyphomonadaceae	28211|Alphaproteobacteria	G	Phosphoglycerate mutase family protein	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD1_k127_6737862_2	648757.Rvan_2970	5.993e-79	271.0	COG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,2TUQM@28211|Alphaproteobacteria,3N8R9@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	M	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	kdsB	-	2.7.7.38	ko:K00979	ko00540,ko01100,map00540,map01100	M00063	R03351,R11396	RC00152,RC00910	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CTP_transf_3
DYD1_k127_6737862_1	331636.G5O_1037	1.066e-157	513.0	COG0210@1|root,COG0210@2|Bacteria,2JFDE@204428|Chlamydiae	204428|Chlamydiae	L	DNA helicase	pcrA	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
DYD1_k127_6747550_7	287.DR97_1722	9.822e-05	47.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,1RSAX@1236|Gammaproteobacteria,1YHVZ@136841|Pseudomonas aeruginosa group	1236|Gammaproteobacteria	U	adhes_NPXG filamentous hemagglutinin family N-terminal domain protein	Z012_01725	GO:0005575,GO:0005576	-	-	-	-	-	-	-	-	-	-	ESPR,Glug,Haemagg_act
DYD1_k127_6747550_6	1116369.KB890024_gene3391	3.363e-51	207.0	COG3210@1|root,COG4625@1|root,COG3210@2|Bacteria,COG4625@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,43IXV@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	O	TIGRFAM outer membrane autotransporter barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
DYD1_k127_6747550_4	331113.SNE_A21880	7.372e-59	207.0	29TPM@1|root,30EXK@2|Bacteria,2JG4I@204428|Chlamydiae	204428|Chlamydiae	S	Belongs to the EUO family	euo	-	-	-	-	-	-	-	-	-	-	-	HTH_17
DYD1_k127_6747550_1	331113.SNE_A21890	3.637e-238	753.0	COG0793@1|root,COG0793@2|Bacteria,2JFNQ@204428|Chlamydiae	204428|Chlamydiae	M	Belongs to the peptidase S41A family	-	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ,Peptidase_S41
DYD1_k127_6747550_0	1444712.BN1013_00519	1.772e-260	809.0	COG0008@1|root,COG0008@2|Bacteria,2JFU2@204428|Chlamydiae	204428|Chlamydiae	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
DYD1_k127_6747550_2	765952.PUV_01610	6.57e-97	328.0	COG0369@1|root,COG0369@2|Bacteria,2JFKP@204428|Chlamydiae	204428|Chlamydiae	P	sulfite reductase	cysJ	-	1.8.1.2	ko:K00380	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_1,NAD_binding_1
DYD1_k127_6747550_3	765952.PUV_01590	1.442e-67	235.0	COG0245@1|root,COG0245@2|Bacteria,2JG09@204428|Chlamydiae	204428|Chlamydiae	I	Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP)	ispF	-	4.6.1.12	ko:K01770	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05637	RC00002,RC01440	ko00000,ko00001,ko00002,ko01000	-	-	-	YgbB
DYD1_k127_6747550_5	331113.SNE_A21990	5.179e-55	203.0	COG0027@1|root,COG0027@2|Bacteria,2JG5J@204428|Chlamydiae	204428|Chlamydiae	F	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6747618_1	383372.Rcas_1169	5.639e-21	94.0	COG4113@1|root,COG4113@2|Bacteria,2G8Z6@200795|Chloroflexi	200795|Chloroflexi	S	Large family of predicted nucleotide-binding domains	-	-	-	-	-	-	-	-	-	-	-	-	PIN
DYD1_k127_6747618_0	868864.Dester_0328	1.511e-31	134.0	COG0797@1|root,COG3087@1|root,COG0797@2|Bacteria,COG3087@2|Bacteria,2G44W@200783|Aquificae	200783|Aquificae	M	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	rlpA	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1,SPOR
DYD1_k127_6747618_3	7091.BGIBMGA010238-TA	1.897e-07	53.0	COG0637@1|root,KOG2914@2759|Eukaryota,38XCG@33154|Opisthokonta,3BH1Y@33208|Metazoa,3CZHT@33213|Bilateria,41YP7@6656|Arthropoda,3SM0F@50557|Insecta,4484H@7088|Lepidoptera	33208|Metazoa	S	Haloacid dehalogenase-like hydrolase	HDHD1	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009116,GO:0009163,GO:0009611,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042060,GO:0042578,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046134,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	3.1.3.96	ko:K17623	-	-	R11180	RC00017	ko00000,ko01000,ko01009	-	-	-	HAD_2
DYD1_k127_678429_0	331113.SNE_A20010	2.985e-225	704.0	COG1157@1|root,COG1157@2|Bacteria,2JFQR@204428|Chlamydiae	204428|Chlamydiae	NU	Type III	sctN	-	3.6.3.14	ko:K03224	ko03070,map03070	M00332,M00542,M00660	-	-	ko00000,ko00001,ko00002,ko01000,ko02044	3.A.6.1,3.A.6.3	-	-	ATP-synt_ab,ATP-synt_ab_N
DYD1_k127_678429_2	331113.SNE_A20020	6.061e-34	138.0	2FDSZ@1|root,31B3S@2|Bacteria,2JG7N@204428|Chlamydiae	204428|Chlamydiae	S	YscO-like protein	-	-	-	-	-	-	-	-	-	-	-	-	YscO-like
DYD1_k127_678429_1	331113.SNE_A20050	2.575e-58	216.0	COG1886@1|root,COG1886@2|Bacteria,2JG37@204428|Chlamydiae	204428|Chlamydiae	N	Type III flagellar switch regulator (C-ring) FliN C-term	-	-	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
DYD1_k127_678429_4	765952.PUV_05700	7.4e-11	65.0	COG0515@1|root,COG2208@1|root,COG0515@2|Bacteria,COG2208@2|Bacteria,2JH07@204428|Chlamydiae	204428|Chlamydiae	KLT	Serine threonine-protein kinase	CP_0043	-	-	-	-	-	-	-	-	-	-	-	Pkinase,SpoIIE
DYD1_k127_6797259_0	331113.SNE_A05300	1.009e-108	362.0	COG0334@1|root,COG0334@2|Bacteria,2JFWZ@204428|Chlamydiae	204428|Chlamydiae	C	Belongs to the Glu Leu Phe Val dehydrogenases family	ldh	-	1.4.1.9	ko:K00263	ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130	-	R01088,R01434,R02196	RC00006,RC00036	ko00000,ko00001,ko01000	-	-	-	ELFV_dehydrog,ELFV_dehydrog_N
DYD1_k127_6797259_1	1444711.CCJF01000005_gene686	4.031e-101	334.0	28M7J@1|root,2ZAKZ@2|Bacteria,2JFRK@204428|Chlamydiae	204428|Chlamydiae	S	Protein of unknown function (DUF2709)	CP_0089	-	-	-	-	-	-	-	-	-	-	-	DUF2709
DYD1_k127_6797259_2	1444712.BN1013_00014	5.956e-27	115.0	COG0802@1|root,COG0802@2|Bacteria,2JG7U@204428|Chlamydiae	204428|Chlamydiae	S	Threonylcarbamoyl adenosine biosynthesis protein TsaE	tsaE	-	-	ko:K06925	-	-	-	-	ko00000,ko03016	-	-	-	TsaE
DYD1_k127_6797259_3	331113.SNE_A22080	2.421e-11	65.0	COG0218@1|root,COG0218@2|Bacteria,2JG1C@204428|Chlamydiae	204428|Chlamydiae	D	Necessary for normal cell division and for the maintenance of normal septation	engB	-	-	ko:K03978	-	-	-	-	ko00000,ko03036	-	-	-	MMR_HSR1
DYD1_k127_6813881_1	264201.pc2013	9.512e-66	231.0	2CK4I@1|root,2ZBXP@2|Bacteria,2JFZG@204428|Chlamydiae	204428|Chlamydiae	S	Virulence plasmid protein pGP6-D-related protein	CP_1067	-	-	-	-	-	-	-	-	-	-	-	UPF0137
DYD1_k127_6813881_0	716544.wcw_0022	1.137e-138	454.0	COG0015@1|root,COG0015@2|Bacteria,2JFME@204428|Chlamydiae	204428|Chlamydiae	F	Adenylosuccinate lyase C-terminus	purB	-	4.3.2.2	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04559	RC00379,RC00444,RC00445	ko00000,ko00001,ko00002,ko01000	-	-	-	ADSL_C,Lyase_1
DYD1_k127_6813881_2	1279038.KB907347_gene3177	1.191e-05	54.0	2BHW6@1|root,32C03@2|Bacteria,1Q61N@1224|Proteobacteria,2VCAC@28211|Alphaproteobacteria,2JYAC@204441|Rhodospirillales	204441|Rhodospirillales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6871449_0	1499680.CCFE01000033_gene3959	9.109e-87	295.0	COG0471@1|root,COG0471@2|Bacteria,1TSGE@1239|Firmicutes,4HDE4@91061|Bacilli,1ZC2I@1386|Bacillus	91061|Bacilli	P	Sodium:sulfate symporter transmembrane region	yflS	-	-	ko:K03319	-	-	-	-	ko00000	2.A.47	-	-	Na_sulph_symp
DYD1_k127_6871449_2	331113.SNE_A13570	1.96e-29	128.0	2DMAR@1|root,333GQ@2|Bacteria,2JHA0@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6871449_1	88036.EFJ18204	7.555e-69	246.0	COG0667@1|root,2S0PI@2759|Eukaryota,37UGN@33090|Viridiplantae,3GP0T@35493|Streptophyta	35493|Streptophyta	C	Aldo/keto reductase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
DYD1_k127_687314_0	1280949.HAD_09775	1.525e-107	360.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTI9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	alcohol dehydrogenase	-	-	1.1.1.1	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N_2
DYD1_k127_689489_1	1444711.CCJF01000004_gene1960	1.512e-131	428.0	COG0587@1|root,COG0587@2|Bacteria,2JFDD@204428|Chlamydiae	204428|Chlamydiae	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity)	dnaE	-	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP
DYD1_k127_689489_0	297246.lpp2623	3.026e-195	617.0	COG2271@1|root,COG2271@2|Bacteria,1MX4V@1224|Proteobacteria,1RMB3@1236|Gammaproteobacteria,1JDWR@118969|Legionellales	118969|Legionellales	G	Major Facilitator Superfamily	uhpC	-	-	ko:K07783	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.1.4.4,2.A.1.4.6	-	-	MFS_1
DYD1_k127_6927486_1	1306947.ARQD01000001_gene982	1.66e-43	165.0	COG0492@1|root,COG0492@2|Bacteria,2NNS7@2323|unclassified Bacteria	2|Bacteria	O	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family	trxB	GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748	1.8.1.9,4.3.1.9	ko:K00384,ko:K03671,ko:K22345	ko00030,ko00450,ko04621,ko05418,map00030,map00450,map04621,map05418	-	R01544,R02016,R03596,R09372	RC00013,RC00544,RC02518,RC02873	ko00000,ko00001,ko01000,ko03110	-	-	iNJ661.Rv3913,iPC815.YPO1374	Pyr_redox_2
DYD1_k127_6927486_0	331113.SNE_A10100	9.556e-110	377.0	COG3083@1|root,COG3083@2|Bacteria	2|Bacteria	S	sulfuric ester hydrolase activity	yejM	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K07014	-	-	-	-	ko00000	-	-	-	DUF3413,Sulfatase
DYD1_k127_6933897_3	331113.SNE_A22050	1.232e-06	50.0	COG0334@1|root,COG0334@2|Bacteria,2JFWZ@204428|Chlamydiae	204428|Chlamydiae	C	Belongs to the Glu Leu Phe Val dehydrogenases family	ldh	-	1.4.1.9	ko:K00263	ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130	-	R01088,R01434,R02196	RC00006,RC00036	ko00000,ko00001,ko01000	-	-	-	ELFV_dehydrog,ELFV_dehydrog_N
DYD1_k127_6933897_0	331113.SNE_A22030	4.559e-232	731.0	COG0018@1|root,COG0018@2|Bacteria,2JFGE@204428|Chlamydiae	204428|Chlamydiae	J	Arginyl-tRNA synthetase	argS	-	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d
DYD1_k127_6933897_1	1444711.CCJF01000005_gene679	3.117e-112	372.0	COG1509@1|root,COG1509@2|Bacteria,2JFD7@204428|Chlamydiae	204428|Chlamydiae	C	4Fe-4S single cluster domain	kamA	-	5.4.3.2	ko:K01843	ko00310,map00310	-	R00461	RC00303	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Fer4_14,Radical_SAM
DYD1_k127_6933897_2	331113.SNE_A22000	3.679e-38	145.0	COG0766@1|root,COG0766@2|Bacteria,2JFIG@204428|Chlamydiae	204428|Chlamydiae	M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine	murA	-	2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R00660	RC00350	ko00000,ko00001,ko01000,ko01011	-	-	-	EPSP_synthase
DYD1_k127_694650_2	765952.PUV_15200	2.032e-70	239.0	COG0346@1|root,COG0346@2|Bacteria,2JGH2@204428|Chlamydiae	204428|Chlamydiae	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
DYD1_k127_694650_0	765952.PUV_15190	5.786e-77	258.0	COG1673@1|root,COG1673@2|Bacteria,2JH4W@204428|Chlamydiae	204428|Chlamydiae	S	EVE domain	-	-	-	-	-	-	-	-	-	-	-	-	EVE
DYD1_k127_694650_1	765952.PUV_15180	1.36e-72	248.0	COG1846@1|root,COG1846@2|Bacteria,2JH1B@204428|Chlamydiae	204428|Chlamydiae	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR
DYD1_k127_694650_4	86106.I862_01755	1.205e-42	160.0	COG0454@1|root,COG0456@2|Bacteria	2|Bacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,NUDIX
DYD1_k127_694650_3	1437425.CSEC_1415	3.137e-44	162.0	COG1619@1|root,COG1619@2|Bacteria	2|Bacteria	V	carboxypeptidase activity	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S66
DYD1_k127_6955230_10	765952.PUV_18820	3.755e-10	63.0	COG0216@1|root,COG0216@2|Bacteria,2JFRI@204428|Chlamydiae	204428|Chlamydiae	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	prfA	-	-	ko:K02835	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
DYD1_k127_6955230_6	716544.wcw_0694	3.675e-25	108.0	COG0254@1|root,COG0254@2|Bacteria,2JG9J@204428|Chlamydiae	204428|Chlamydiae	J	Ribosomal protein L31	rpmE2	-	-	ko:K02909	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L31
DYD1_k127_6955230_7	1437425.CSEC_0511	4.961e-25	114.0	COG0705@1|root,COG0705@2|Bacteria,2JG8J@204428|Chlamydiae	204428|Chlamydiae	S	Rhomboid family	-	-	-	-	-	-	-	-	-	-	-	-	Rhomboid
DYD1_k127_6955230_8	227086.JGI_V11_87202	8.826e-18	91.0	2E2B0@1|root,2S9J2@2759|Eukaryota	2759|Eukaryota	S	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
DYD1_k127_6955230_3	264201.pc1784	2.913e-49	184.0	COG1442@1|root,COG1442@2|Bacteria,2JG80@204428|Chlamydiae	204428|Chlamydiae	M	glycosyl transferase family 8	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_8
DYD1_k127_6955230_9	1444711.CCJF01000005_gene1776	8.867e-15	78.0	COG0590@1|root,COG0590@2|Bacteria,2JGFE@204428|Chlamydiae	204428|Chlamydiae	FJ	tRNA wobble adenosine to inosine editing	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6955230_2	1444712.BN1013_01577	2.642e-60	211.0	COG0590@1|root,COG0590@2|Bacteria,2JFZJ@204428|Chlamydiae	204428|Chlamydiae	FJ	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)	tadA	-	3.5.4.33	ko:K11991	-	-	R10223	RC00477	ko00000,ko01000,ko03016	-	-	-	MafB19-deam
DYD1_k127_6955230_5	1444711.CCJF01000005_gene1778	1.485e-40	157.0	2F34V@1|root,33TPV@2|Bacteria,2JGZC@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_6955230_4	331113.SNE_A07500	2.681e-43	159.0	COG0184@1|root,COG0184@2|Bacteria,2JG4W@204428|Chlamydiae	204428|Chlamydiae	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA	rpsO	-	-	ko:K02956	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S15
DYD1_k127_6955230_0	1444711.CCJF01000005_gene1781	8.121e-316	979.0	COG1185@1|root,COG1185@2|Bacteria,2JFFK@204428|Chlamydiae	204428|Chlamydiae	J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction	pnp	-	2.7.7.8	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	M00394	R00437,R00438,R00439,R00440	RC02795	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	-	-	-	KH_1,PNPase,RNase_PH,RNase_PH_C,S1
DYD1_k127_6955230_1	765952.PUV_24770	1.484e-130	422.0	COG0017@1|root,COG2606@1|root,COG0017@2|Bacteria,COG2606@2|Bacteria,2JGS0@204428|Chlamydiae	204428|Chlamydiae	J	Aminoacyl-tRNA editing domain	-	-	6.1.1.23	ko:K09759	ko00970,map00970	M00360	R03647,R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_2,tRNA_anti-codon,tRNA_edit
DYD1_k127_6972711_2	1437425.CSEC_1546	3.356e-49	187.0	arCOG09486@1|root,32W31@2|Bacteria,2JGX5@204428|Chlamydiae	204428|Chlamydiae	M	Glycosyl transferase family 11	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_11
DYD1_k127_6972711_0	331113.SNE_A08660	0.0	2137.0	COG0178@1|root,COG0178@2|Bacteria,2JFSD@204428|Chlamydiae	204428|Chlamydiae	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	uvrA	-	-	ko:K03701	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	ABC_tran
DYD1_k127_6972711_1	1444711.CCJF01000004_gene2330	2.758e-195	621.0	COG0469@1|root,COG0469@2|Bacteria,2JFJH@204428|Chlamydiae	204428|Chlamydiae	G	Pyruvate kinase, barrel domain	pyk	-	2.7.1.40	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	M00001,M00002,M00049,M00050	R00200,R00430,R01138,R01858,R02320	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	PK,PK_C
DYD1_k127_6978098_1	903818.KI912268_gene1971	1.937e-26	112.0	COG3943@1|root,COG3943@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Virulence_RhuM
DYD1_k127_6978098_0	1444711.CCJF01000005_gene923	1.534e-97	325.0	COG0596@1|root,COG0596@2|Bacteria	2|Bacteria	S	hydrolase activity, acting on ester bonds	-	-	3.1.1.85	ko:K02170	ko00780,ko01100,map00780,map01100	M00572	R09725	RC00460,RC00461	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_1,Abhydrolase_6
DYD1_k127_717530_1	7739.XP_002589377.1	1.056e-22	108.0	COG4886@1|root,KOG0619@2759|Eukaryota,38E6Q@33154|Opisthokonta,3BE4G@33208|Metazoa,3D0J2@33213|Bilateria,483Q5@7711|Chordata	33154|Opisthokonta	KLT	maintenance of epithelial cell apical/basal polarity	-	-	-	-	-	-	-	-	-	-	-	-	Death,LRR_4,LRR_8,Pkinase,Pkinase_Tyr,TIR_2
DYD1_k127_717530_0	331113.SNE_A07200	2.095e-193	616.0	COG0272@1|root,COG0272@2|Bacteria,2JFKS@204428|Chlamydiae	204428|Chlamydiae	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	-	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5
DYD1_k127_73575_0	1158292.JPOE01000002_gene2649	5.406e-162	519.0	COG0675@1|root,COG0675@2|Bacteria,1MUU0@1224|Proteobacteria,2VJG9@28216|Betaproteobacteria,1KN7Z@119065|unclassified Burkholderiales	28216|Betaproteobacteria	L	Helix-turn-helix domain	-	-	-	ko:K07496	-	-	-	-	ko00000	-	-	-	HTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
DYD1_k127_73575_1	1122619.KB892295_gene2054	2.703e-42	156.0	COG1943@1|root,COG1943@2|Bacteria,1RDD7@1224|Proteobacteria,2VS0W@28216|Betaproteobacteria	28216|Betaproteobacteria	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
DYD1_k127_7608_0	264201.pc0640	6.427e-267	837.0	COG0465@1|root,COG0465@2|Bacteria,2JFFV@204428|Chlamydiae	204428|Chlamydiae	D	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,Peptidase_M41
DYD1_k127_785236_0	331113.SNE_A05370	0.0	1082.0	COG2902@1|root,COG2902@2|Bacteria,2JFGR@204428|Chlamydiae	204428|Chlamydiae	C	Bacterial NAD-glutamate dehydrogenase	gdhB	-	1.4.1.2	ko:K15371	ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100	-	R00243	RC00006,RC02799	ko00000,ko00001,ko01000	-	-	-	Bac_GDH,ELFV_dehydrog
DYD1_k127_785236_3	756067.MicvaDRAFT_1856	0.0002033	49.0	2DRAG@1|root,33AYH@2|Bacteria,1GFJT@1117|Cyanobacteria	1117|Cyanobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_785236_2	331113.SNE_A06950	6.486e-05	56.0	COG0457@1|root,COG0457@2|Bacteria	331113.SNE_A06950|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_785236_1	331113.SNE_B25180	1.22e-58	226.0	COG0457@1|root,COG0457@2|Bacteria	331113.SNE_B25180|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_795317_0	264201.pc1877	4.13e-87	293.0	COG0528@1|root,COG0528@2|Bacteria,2JFZI@204428|Chlamydiae	204428|Chlamydiae	F	Catalyzes the reversible phosphorylation of UMP to UDP	pyrH	-	2.7.4.22	ko:K09903	ko00240,ko01100,map00240,map01100	-	R00158	RC00002	ko00000,ko00001,ko01000	-	-	-	AA_kinase
DYD1_k127_795317_1	1444711.CCJF01000005_gene248	1.88e-57	205.0	COG0233@1|root,COG0233@2|Bacteria,2JFYW@204428|Chlamydiae	204428|Chlamydiae	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	frr	-	-	ko:K02838	-	-	-	-	ko00000,ko03012	-	-	-	RRF
DYD1_k127_804099_0	331113.SNE_A07690	1.054e-173	557.0	COG0507@1|root,COG0507@2|Bacteria,2JFJU@204428|Chlamydiae	204428|Chlamydiae	L	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity	-	-	3.1.11.5	ko:K03581	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	AAA_30,HHH_4,HHH_5,UvrD_C_2
DYD1_k127_804099_1	1437425.CSEC_0908	1.297e-19	89.0	COG1961@1|root,COG1961@2|Bacteria,2JGRW@204428|Chlamydiae	204428|Chlamydiae	L	Resolvase, N terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Resolvase,Zn_ribbon_recom
DYD1_k127_811437_1	331113.SNE_A06750	6.882e-81	274.0	COG0664@1|root,COG1252@1|root,COG0664@2|Bacteria,COG1252@2|Bacteria,2JFCT@204428|Chlamydiae	2|Bacteria	C	Pyridine nucleotide-disulphide oxidoreductase	ndh	-	1.6.99.3	ko:K03885,ko:K10716	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000,ko02000	1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6	-	-	Abhydrolase_6,CBS,Ion_trans,Pyr_redox_2,cNMP_binding
DYD1_k127_811437_0	331113.SNE_A22950	1.625e-129	425.0	COG0814@1|root,COG0814@2|Bacteria,2JFWY@204428|Chlamydiae	204428|Chlamydiae	E	Tryptophan/tyrosine permease family	-	-	-	ko:K03834	-	-	-	-	ko00000,ko02000	2.A.42.1.1	-	-	Trp_Tyr_perm
DYD1_k127_811437_2	331113.SNE_A22980	2.1e-22	99.0	COG0814@1|root,COG0814@2|Bacteria,2JFFY@204428|Chlamydiae	204428|Chlamydiae	E	Tryptophan/tyrosine permease family	tyrP_1	-	-	ko:K03834	-	-	-	-	ko00000,ko02000	2.A.42.1.1	-	-	Trp_Tyr_perm
DYD1_k127_833033_2	548479.HMPREF0573_11807	3.201e-13	75.0	COG0624@1|root,COG0624@2|Bacteria,2GM84@201174|Actinobacteria,4D34Y@85005|Actinomycetales	201174|Actinobacteria	E	Peptidase dimerization domain protein	argE	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
DYD1_k127_833033_1	768670.Calni_1985	1.707e-16	84.0	COG4866@1|root,COG4866@2|Bacteria,2GF8M@200930|Deferribacteres	200930|Deferribacteres	S	Uncharacterised conserved protein (DUF2156)	-	-	-	ko:K01163	-	-	-	-	ko00000	-	-	-	DUF2156
DYD1_k127_833033_0	639282.DEFDS_0806	2.675e-37	145.0	COG4866@1|root,COG4866@2|Bacteria,2GF8M@200930|Deferribacteres	200930|Deferribacteres	S	Uncharacterised conserved protein (DUF2156)	-	-	-	ko:K01163	-	-	-	-	ko00000	-	-	-	DUF2156
DYD1_k127_906891_1	331113.SNE_A15950	7.239e-149	492.0	COG0681@1|root,COG0681@2|Bacteria,2JFVN@204428|Chlamydiae	204428|Chlamydiae	U	Belongs to the peptidase S26 family	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24
DYD1_k127_906891_2	756272.Plabr_4457	1.969e-67	238.0	COG0451@1|root,COG0451@2|Bacteria,2IZ4B@203682|Planctomycetes	203682|Planctomycetes	GM	Vitamin K epoxide reductase family	-	-	-	-	-	-	-	-	-	-	-	-	VKOR
DYD1_k127_906891_4	344747.PM8797T_22873	5.139e-13	73.0	2E8F6@1|root,332TI@2|Bacteria,2J0NF@203682|Planctomycetes	203682|Planctomycetes	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SPW
DYD1_k127_906891_3	215803.DB30_8770	6.832e-51	186.0	COG0406@1|root,COG0406@2|Bacteria,1RCJE@1224|Proteobacteria,42W6J@68525|delta/epsilon subdivisions,2WSAJ@28221|Deltaproteobacteria,2YZEF@29|Myxococcales	28221|Deltaproteobacteria	G	Phosphoglycerate mutase family	-	-	-	-	-	-	-	-	-	-	-	-	His_Phos_1
DYD1_k127_906891_0	331113.SNE_A16000	0.0	1142.0	COG0060@1|root,COG0060@2|Bacteria,2JFQJ@204428|Chlamydiae	204428|Chlamydiae	J	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)	ileS	-	6.1.1.5	ko:K01870	ko00970,map00970	M00359,M00360	R03656	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1
DYD1_k127_923013_2	488538.SAR116_1163	5.274e-26	114.0	COG1268@1|root,COG1268@2|Bacteria,1RH78@1224|Proteobacteria,2U9DN@28211|Alphaproteobacteria,4BR35@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	S	BioY family	bioY	-	-	ko:K03523	ko02010,map02010	M00581,M00582	-	-	ko00000,ko00001,ko00002,ko02000	2.A.88.1,2.A.88.2	-	-	BioY
DYD1_k127_923013_3	1121104.AQXH01000001_gene2038	8.764e-11	71.0	COG0463@1|root,COG0463@2|Bacteria	2|Bacteria	M	Glycosyl transferase, family 2	-	-	-	ko:K20444	-	-	-	-	ko00000,ko01000,ko01005,ko02000	4.D.1.3	GT2,GT4	-	Glycos_transf_2
DYD1_k127_923013_1	765952.PUV_13500	1.251e-30	125.0	COG1051@1|root,COG1051@2|Bacteria,2JHHF@204428|Chlamydiae	204428|Chlamydiae	F	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
DYD1_k127_923013_0	331113.SNE_A17070	1.127e-38	146.0	COG0304@1|root,COG0304@2|Bacteria,2JFJJ@204428|Chlamydiae	204428|Chlamydiae	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	fabF	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
DYD1_k127_932583_0	331113.SNE_A05620	5.832e-176	561.0	COG1252@1|root,COG1252@2|Bacteria,2JFCT@204428|Chlamydiae	204428|Chlamydiae	C	Pyridine nucleotide-disulphide oxidoreductase	ndh	-	1.6.99.3	ko:K03885	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
DYD1_k127_932583_2	1444712.BN1013_01669	6.693e-59	214.0	2A26P@1|root,30QHA@2|Bacteria,2JG3I@204428|Chlamydiae	204428|Chlamydiae	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SMI1_KNR4
DYD1_k127_932583_1	716544.wcw_1427	1.503e-133	432.0	COG1493@1|root,COG1493@2|Bacteria,2JFSZ@204428|Chlamydiae	204428|Chlamydiae	H	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr)	hprK	-	-	ko:K06023	-	-	-	-	ko00000,ko01000	-	-	-	Hpr_kinase_C,Hpr_kinase_N
DYD1_k127_975937_1	331113.SNE_A07810	7.579e-66	241.0	2BYJ1@1|root,32YU2@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
DYD1_k127_975937_4	1201293.AKXQ01000001_gene2158	9.283e-21	93.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,1SCA7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	K	Cold shock	cspG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0044424,GO:0044444,GO:0044464,GO:0050896	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
DYD1_k127_975937_0	1123368.AUIS01000009_gene2470	3.719e-125	413.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,1RMEN@1236|Gammaproteobacteria	1236|Gammaproteobacteria	U	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	gltP	-	-	ko:K03309	-	-	-	-	ko00000	2.A.23	-	-	SDF
DYD1_k127_975937_3	713587.THITH_15400	1.063e-29	123.0	COG1430@1|root,COG1430@2|Bacteria,1MZBJ@1224|Proteobacteria,1SDVD@1236|Gammaproteobacteria,1WZPY@135613|Chromatiales	135613|Chromatiales	S	Uncharacterized ACR, COG1430	-	-	-	ko:K09005	-	-	-	-	ko00000	-	-	-	DUF192
DYD1_k127_975937_2	1122164.JHWF01000012_gene2670	2.797e-35	145.0	COG4313@1|root,COG4313@2|Bacteria,1N5CH@1224|Proteobacteria,1SFFE@1236|Gammaproteobacteria,1JC64@118969|Legionellales	118969|Legionellales	C	Protein involved in meta-pathway of phenol degradation	-	-	-	-	-	-	-	-	-	-	-	-	-
## 1389 queries scanned
## Total time (seconds): 10.45548939704895
## Rate: 132.85 q/s